Pregenerated sensors for ATP6V1E1 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000019210Ensembl transcript IDs: ENSMUST00000019354.11, ENSMUST00000203783.3
Found 39 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR TCA 90 bp | AGGCCGTGCAGCACATCTGACCCTCCCGTCCTGCTGCAAACCCAGTaGACAGCTGTGGCCTCAGATGAGCTGGGGCTGGGTTCTTGCCCA | + |
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Preference number: 1 (lower is better) Translates to: RPCSTSDPPVLLQTQ*TAVASDELGLGSCP Trigger: TGGGCAAGAACCCAGCCCCAGCTCATCTGAGGCCACAGCTGTTCACTGGGTTTGCAGCAGGACGGGAGGGTCAGATGTGCTGCACGGCCT 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000019354.11 ENSMUST00000203783.3 |
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| 3UTR TCA 90 bp | AGGACAGGGAAAGAATGGGTCCTGGGTGAGGCCGTGCAGCACATCTaGCCCTCCCGTCCTGCTGCAAACCCAGTGAACAGCTGTGGCCTC | + |
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Preference number: 1 (lower is better) Translates to: RTGKEWVLGEAVQHI*PSRPAANPVNSCGL Trigger: GAGGCCACAGCTGTTCACTGGGTTTGCAGCAGGACGGGAGGGTCAGATGTGCTGCACGGCCTCACCCAGGACCCATTCTTTCCCTGTCCT 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000019354.11 ENSMUST00000203783.3 |
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| 3UTR CCA 90 bp | GCACATCTGACCCTCCCGTCCTGCTGCAAACCCAGTGAACAGCTGTaGCCTCAGATGAGCTGGGGCTGGGTTCTTGCCCACACCAAGTGG | + |
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Preference number: 1 (lower is better) Translates to: AHLTLPSCCKPSEQL*PQMSWGWVLAHTKW Trigger: CCACTTGGTGTGGGCAAGAACCCAGCCCCAGCTCATCTGAGGCCACAGCTGTTCACTGGGTTTGCAGCAGGACGGGAGGGTCAGATGTGC 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000019354.11 ENSMUST00000203783.3 |
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| 3UTR TCA 90 bp | ACTCACTCTAGACTAGAGCAGGACAGGGAAAGAATGGGTCCTGGGTaGGGCCGTGCAGCACATCTGACCCTCCCGTCCTGCTGCAAACCC | + |
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Preference number: 1 (lower is better) Translates to: THSRLEQDRERMGPG*GRAAHLTLPSCCKP Trigger: GGGTTTGCAGCAGGACGGGAGGGTCAGATGTGCTGCACGGCCTCACCCAGGACCCATTCTTTCCCTGTCCTGCTCTAGTCTAGAGTGAGT 59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000019354.11 ENSMUST00000203783.3 |
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| 3UTR TCA 90 bp | CTAGACCTAAACAGTAACAGCGAAGGTAGTGTTCCTGGAGGAATGTaGGTCCCACATGCACTTTATGCCCAAAGAGCAGGGACAGCATGC | + |
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Preference number: 1 (lower is better) Translates to: LDLNSNSEGSVPGGM*VPHALYAQRAGTAC Trigger: GCATGCTGTCCCTGCTCTTTGGGCATAAAGTGCATGTGGGACTCACATTCCTCCAGGAACACTACCTTCGCTGTTACTGTTTAGGTCTAG 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000019354.11 ENSMUST00000203783.3 |
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| 3UTR TCA 90 bp | GCTGTTGACACTGAGCCGAGGGCATTAGCTGTAGAGGGTGTCCACTaGTTACCAGTATTAGAACAGAAAGAGGAAGCCACACAGATAATC | + |
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Preference number: 1 (lower is better) Translates to: AVDTEPRALAVEGVH*LPVLEQKEEATQII Trigger: GATTATCTGTGTGGCTTCCTCTTTCTGTTCTAATACTGGTAATCAGTGGACACCCTCTACAGCTAATGCCCTCGGCTCAGTGTCAACAGC 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000019354.11 ENSMUST00000203783.3 |
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| 3UTR-3UTR GCA 90 bp | TATGCCCAAAGAGCAGGGACAGCATGCACAACTCACTCTAGACTAGAGCAGGACCTGGGGCTGGGTTCTTaGCCACACCAAGTGGCCCTG | + |
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Preference number: 2 (lower is better) Translates to: YAQRAGTACTTHSRLEQDLGLGS*PHQVAL Trigger: CAGGGCCACTTGGTGTGGGCAAGAACCCAGCCCCAG...GTCCTGCTCTAGTCTAGAGTGAGTTGTGCATGCTGTCCCTGCTCTTTGGGCATA 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000019354.11 ENSMUST00000203783.3 |
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| 3UTR-3UTR CCA 90 bp | CAAAGAGCAGGGACAGCATGCACAACTCACTCTAGACTAGAGCAGGACAGGGAATGGCCTCAGATGAGCTaGGGCTGGGTTCTTGCCCAC | + |
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Preference number: 2 (lower is better) Translates to: QRAGTACTTHSRLEQDREWPQMS*GWVLAH Trigger: GTGGGCAAGAACCCAGCCCCAGCTCATCTGAGGCCA...TTCCCTGTCCTGCTCTAGTCTAGAGTGAGTTGTGCATGCTGTCCCTGCTCTTTG 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000019354.11 ENSMUST00000203783.3 |
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| 3UTR-3UTR CCA 90 bp | TATGCCCAAAGAGCAGGGACAGCATGCACAACTCACTCTAGACTAGAGCAGGACCCCAGTGAACAGCTGTaGCCTCAGATGAGCTGGGGC | + |
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Preference number: 2 (lower is better) Translates to: YAQRAGTACTTHSRLEQDPSEQL*PQMSWG Trigger: GCCCCAGCTCATCTGAGGCCACAGCTGTTCACTGGG...GTCCTGCTCTAGTCTAGAGTGAGTTGTGCATGCTGTCCCTGCTCTTTGGGCATA 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000019354.11 ENSMUST00000203783.3 |
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| 3UTR-3UTR TCA 90 bp | GCACTTTATGCCCAAAGAGCAGGGACAGCATGCACAACTCACTCTAGACTAGAGAGAATGGGTCCTGGGTaGGGCCGTGCAGCACATCTG | + |
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Preference number: 2 (lower is better) Translates to: ALYAQRAGTACTTHSRLERMGPG*GRAAHL Trigger: CAGATGTGCTGCACGGCCTCACCCAGGACCCATTCT...CTCTAGTCTAGAGTGAGTTGTGCATGCTGTCCCTGCTCTTTGGGCATAAAGTGC 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000019354.11 ENSMUST00000203783.3 |
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| 3UTR-3UTR TCA 90 bp | CAAAGAGCAGGGACAGCATGCACAACTCACTCTAGACTAGAGCAGGACAGGGAACTGCTGCAAACCCAGTaGACAGCTGTGGCCTCAGAT | + |
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Preference number: 2 (lower is better) Translates to: QRAGTACTTHSRLEQDRELLQTQ*TAVASD Trigger: ATCTGAGGCCACAGCTGTTCACTGGGTTTGCAGCAG...TTCCCTGTCCTGCTCTAGTCTAGAGTGAGTTGTGCATGCTGTCCCTGCTCTTTG 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000019354.11 ENSMUST00000203783.3 |
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| 3UTR-3UTR GCA 90 bp | TTCCTGGAGGAATGTGAGTCCCACATGCACTTTATGCCCAAAGAGCAGGGACAGGCCACACAGATAATCTaGTTCTCCAGGAGAACAGCC | + |
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Preference number: 2 (lower is better) Translates to: FLEECESHMHFMPKEQGQATQII*FSRRTA Trigger: GGCTGTTCTCCTGGAGAAGCAGATTATCTGTGTGGC...CTGTCCCTGCTCTTTGGGCATAAAGTGCATGTGGGACTCACATTCCTCCAGGAA 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000019354.11 ENSMUST00000203783.3 |
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| 3UTR-3UTR GCA 90 bp | GCACTTTATGCCCAAAGAGCAGGGACAGCATGCACAACTCACTCTAGACTAGAGGCCACACAGATAATCTaGTTCTCCAGGAGAACAGCC | + |
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Preference number: 2 (lower is better) Translates to: ALYAQRAGTACTTHSRLEATQII*FSRRTA Trigger: GGCTGTTCTCCTGGAGAAGCAGATTATCTGTGTGGC...CTCTAGTCTAGAGTGAGTTGTGCATGCTGTCCCTGCTCTTTGGGCATAAAGTGC 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000019354.11 ENSMUST00000203783.3 |
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| 3UTR-3UTR TCA 90 bp | ATTTACAGAGAAGGAAGACTAGACCTAAACAGTAACAGCGAAGGTAGTGTTCCTAGAATGGGTCCTGGGTaGGGCCGTGCAGCACATCTG | + |
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Preference number: 2 (lower is better) Translates to: IYREGRLDLNSNSEGSVPRMGPG*GRAAHL Trigger: CAGATGTGCTGCACGGCCTCACCCAGGACCCATTCT...AGGAACACTACCTTCGCTGTTACTGTTTAGGTCTAGTCTTCCTTCTCTGTAAAT 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000019354.11 ENSMUST00000203783.3 |
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| 3UTR-3UTR GCA 90 bp | ATTTACAGAGAAGGAAGACTAGACCTAAACAGTAACAGCGAAGGTAGTGTTCCTAATGTGAGTCCCACATaGACTTTATGCCCAAAGAGC | + |
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Preference number: 2 (lower is better) Translates to: IYREGRLDLNSNSEGSVPNVSPT*TLCPKS Trigger: GCTCTTTGGGCATAAAGTGCATGTGGGACTCACATT...AGGAACACTACCTTCGCTGTTACTGTTTAGGTCTAGTCTTCCTTCTCTGTAAAT 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000019354.11 ENSMUST00000203783.3 |
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| 3UTR TCA 72 bp | AGACTAGAGCAGGACAGGGAAAGAATGGGTCCTGGGTaGGGCCGTGCAGCACATCTGACCCTCCCGTCCTGC | + |
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Preference number: 3 (lower is better) Translates to: RLEQDRERMGPG*GRAAHLTLPSC Trigger: GCAGGACGGGAGGGTCAGATGTGCTGCACGGCCTCACCCAGGACCCATTCTTTCCCTGTCCTGCTCTAGTCT 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000019354.11 ENSMUST00000203783.3 |
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| 3UTR CCA 72 bp | TGCAAACCCAGTGAACAGCTGTGGCCTCAGATGAGCTaGGGCTGGGTTCTTGCCCACACCAAGTGGCCCTGC | + |
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Preference number: 3 (lower is better) Translates to: CKPSEQLWPQMS*GWVLAHTKWPC Trigger: GCAGGGCCACTTGGTGTGGGCAAGAACCCAGCCCCAGCTCATCTGAGGCCACAGCTGTTCACTGGGTTTGCA 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000019354.11 ENSMUST00000203783.3 |
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| 3UTR TCA 72 bp | AAAGAATGGGTCCTGGGTGAGGCCGTGCAGCACATCTaGCCCTCCCGTCCTGCTGCAAACCCAGTGAACAGC | + |
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Preference number: 3 (lower is better) Translates to: KEWVLGEAVQHI*PSRPAANPVNS Trigger: GCTGTTCACTGGGTTTGCAGCAGGACGGGAGGGTCAGATGTGCTGCACGGCCTCACCCAGGACCCATTCTTT 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000019354.11 ENSMUST00000203783.3 |
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| 3UTR GCA 72 bp | TGTTCCTGGAGGAATGTGAGTCCCACATGCACTTTATaGCCAAAGAGCAGGGACAGCATGCACAACTCACTC | + |
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Preference number: 3 (lower is better) Translates to: CSWRNVSPTCTL*PKSRDSMHNSL Trigger: GAGTGAGTTGTGCATGCTGTCCCTGCTCTTTGGGCATAAAGTGCATGTGGGACTCACATTCCTCCAGGAACA 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000019354.11 ENSMUST00000203783.3 |
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| 3UTR TCA 72 bp | AACAGTAACAGCGAAGGTAGTGTTCCTGGAGGAATGTaGGTCCCACATGCACTTTATGCCCAAAGAGCAGGG | + |
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Preference number: 3 (lower is better) Translates to: NSNSEGSVPGGM*VPHALYAQRAG Trigger: CCCTGCTCTTTGGGCATAAAGTGCATGTGGGACTCACATTCCTCCAGGAACACTACCTTCGCTGTTACTGTT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000019354.11 ENSMUST00000203783.3 |
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| 3UTR GCA 72 bp | GTATTAGAACAGAAAGAGGAAGCCACACAGATAATCTaGTTCTCCAGGAGAACAGCCGTGGGGGAACTGCTC | + |
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Preference number: 3 (lower is better) Translates to: VLEQKEEATQII*FSRRTAVGELL Trigger: GAGCAGTTCCCCCACGGCTGTTCTCCTGGAGAAGCAGATTATCTGTGTGGCTTCCTCTTTCTGTTCTAATAC 50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000019354.11 ENSMUST00000203783.3 |
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| 3UTR TCA 72 bp | ACTGAGCCGAGGGCATTAGCTGTAGAGGGTGTCCACTaGTTACCAGTATTAGAACAGAAAGAGGAAGCCACA | + |
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Preference number: 3 (lower is better) Translates to: TEPRALAVEGVH*LPVLEQKEEAT Trigger: TGTGGCTTCCTCTTTCTGTTCTAATACTGGTAATCAGTGGACACCCTCTACAGCTAATGCCCTCGGCTCAGT 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000019354.11 ENSMUST00000203783.3 |
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| CDS-3UTR TCA 90 bp | GCACTTTATGCCCAAAGAGCAGGGACAGCATGCACAACTCACTCTAGACTAGAGAGCTGGTACAAGCCCTaGAGGACCAGCCCATCCAGC | + |
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Preference number: 4 (lower is better) Translates to: ALYAQRAGTACTTHSRLESWYKP*RTSPSS Trigger: GCTGGATGGGCTGGTCCTTCAGGGCTTGTACCAGCT...CTCTAGTCTAGAGTGAGTTGTGCATGCTGTCCCTGCTCTTTGGGCATAAAGTGC 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000019354.11 |
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| CDS-3UTR GCA 90 bp | AATGGGTCCTGGGTGAGGCCGTGCAGCACATCTGACCCTCCCGTCCTGCTGCAAACCTTACTGAGTCTCTaGTTTGCCTCATTTAGCAGA | + |
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Preference number: 4 (lower is better) Translates to: NGSWVRPCSTSDPPVLLQTLLSL*FASFSR Trigger: TCTGCTAAATGAGGCAAAGCAGAGACTCAGTAAGGT...TTGCAGCAGGACGGGAGGGTCAGATGTGCTGCACGGCCTCACCCAGGACCCATT 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000019354.11 ENSMUST00000203783.3 |
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| CDS-3UTR GCA 90 bp | AATGGGTCCTGGGTGAGGCCGTGCAGCACATCTGACCCTCCCGTCCTGCTGCAAATCATGTGCTTAATCTaGTTCTGTACATCTGCATCG | + |
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Preference number: 4 (lower is better) Translates to: NGSWVRPCSTSDPPVLLQIMCLI*FCTSAS Trigger: CGATGCAGATGTACAGAAGCAGATTAAGCACATGAT...TTGCAGCAGGACGGGAGGGTCAGATGTGCTGCACGGCCTCACCCAGGACCCATT 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000019354.11 |
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| CDS-3UTR GCA 90 bp | ACAGAAAGAGGAAGCCACACAGATAATCTGCTTCTCCAGGAGAACAGCCGTGGGACTTCTGGCATCATCTaGTGGGCTATCAGGTCCAGC | + |
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Preference number: 4 (lower is better) Translates to: TERGSHTDNLLLQENSRGTSGII*WAIRSS Trigger: GCTGGACCTGATAGCCCAGCAGATGATGCCAGAAGT...CCCACGGCTGTTCTCCTGGAGAAGCAGATTATCTGTGTGGCTTCCTCTTTCTGT 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000019354.11 |
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| CDS-3UTR GCA 90 bp | TTCTTGCCCACACCAAGTGGCCCTGCTGTTGACACTGAGCCGAGGGCATTAGCTGGAAATCTTGTTTTCTaGAACGCACGATCATTCGAG | + |
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Preference number: 4 (lower is better) Translates to: FLPTPSGPAVDTEPRALAGNLVF*NARSFE Trigger: CTCGAATGATCGTGCGTTGCAGAAAACAAGATTTCC...AGCTAATGCCCTCGGCTCAGTGTCAACAGCAGGGCCACTTGGTGTGGGCAAGAA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000019354.11 |
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| CDS-3UTR CCA 90 bp | AGAGGGTGTCCACTGATTACCAGTATTAGAACAGAAAGAGGAAGCCACACAGATGGCTCCACGGACTTCTaGCATCATCAGCCCATCCAG | + |
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Preference number: 4 (lower is better) Translates to: RGCPLITSIRTERGSHTDGSTDF*HHQPIQ Trigger: CTGGATGGGCTGATGATGCCAGAAGTCCGTGGAGCC...ATCTGTGTGGCTTCCTCTTTCTGTTCTAATACTGGTAATCAGTGGACACCCTCT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000203783.3 |
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| CDS-3UTR GCA 90 bp | ACAGAAAGAGGAAGCCACACAGATAATCTGCTTCTCCAGGAGAACAGCCGTGGGTTCAGTCTTTGCGTTTaGACAAGGCGACCTTTCTCA | + |
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Preference number: 4 (lower is better) Translates to: TERGSHTDNLLLQENSRGFSLCV*TRRPFS Trigger: TGAGAAAGGTCGCCTTGTGCAAACGCAAAGACTGAA...CCCACGGCTGTTCTCCTGGAGAAGCAGATTATCTGTGTGGCTTCCTCTTTCTGT 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000019354.11 ENSMUST00000203783.3 |
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| CDS-3UTR GCA 90 bp | TATGCCCAAAGAGCAGGGACAGCATGCACAACTCACTCTAGACTAGAGCAGGACTTCAGTCTTTGCGTTTaGACAAGGCGACCTTTCTCA | + |
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Preference number: 4 (lower is better) Translates to: YAQRAGTACTTHSRLEQDFSLCV*TRRPFS Trigger: TGAGAAAGGTCGCCTTGTGCAAACGCAAAGACTGAA...GTCCTGCTCTAGTCTAGAGTGAGTTGTGCATGCTGTCCCTGCTCTTTGGGCATA 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000019354.11 ENSMUST00000203783.3 |
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| CDS-3UTR GCA 90 bp | GCACTTTATGCCCAAAGAGCAGGGACAGCATGCACAACTCACTCTAGACTAGAGACCTTACTGAGTCTCTaGTTTGCCTCATTTAGCAGA | + |
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Preference number: 4 (lower is better) Translates to: ALYAQRAGTACTTHSRLETLLSL*FASFSR Trigger: TCTGCTAAATGAGGCAAAGCAGAGACTCAGTAAGGT...CTCTAGTCTAGAGTGAGTTGTGCATGCTGTCCCTGCTCTTTGGGCATAAAGTGC 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000019354.11 ENSMUST00000203783.3 |
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| CDS-3UTR TCA 90 bp | GTAACAGCGAAGGTAGTGTTCCTGGAGGAATGTGAGTCCCACATGCACTTTATGACTTTGAGCCTTGCTTaGTTCATCAAGTTGGACATC | + |
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Preference number: 4 (lower is better) Translates to: VTAKVVFLEECESHMHFMTLSLA*FIKLDI Trigger: GATGTCCAACTTGATGAATCAAGCAAGGCTCAAAGT...CATAAAGTGCATGTGGGACTCACATTCCTCCAGGAACACTACCTTCGCTGTTAC 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000019354.11 ENSMUST00000203783.3 |
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| CDS-3UTR TCA 90 bp | ATTTACAGAGAAGGAAGACTAGACCTAAACAGTAACAGCGAAGGTAGTGTTCCTACTTTGAGCCTTGCTTaGTTCATCAAGTTGGACATC | + |
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Preference number: 4 (lower is better) Translates to: IYREGRLDLNSNSEGSVPTLSLA*FIKLDI Trigger: GATGTCCAACTTGATGAATCAAGCAAGGCTCAAAGT...AGGAACACTACCTTCGCTGTTACTGTTTAGGTCTAGTCTTCCTTCTCTGTAAAT 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000019354.11 ENSMUST00000203783.3 |
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| CDS-3UTR CAA 90 bp | GAGGAAGCCACACAGATAATCTGCTTCTCCAGGAGAACAGCCGTGGGGGAACTGCTTCAGTCTTTGCGTTaGCACAAGGCGACCTTTCTC | + |
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Preference number: 5 (lower is better) Translates to: EEATQIICFSRRTAVGELLQSLR*HKATFL Trigger: GAGAAAGGTCGCCTTGTGCAAACGCAAAGACTGAAG...CAGTTCCCCCACGGCTGTTCTCCTGGAGAAGCAGATTATCTGTGTGGCTTCCTC 53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000019354.11 ENSMUST00000203783.3 |
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| CDS-3UTR CAA 90 bp | GCACTTTATGCCCAAAGAGCAGGGACAGCATGCACAACTCACTCTAGACTAGAGCTTCAGTCTTTGCGTTaGCACAAGGCGACCTTTCTC | + |
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Preference number: 5 (lower is better) Translates to: ALYAQRAGTACTTHSRLELQSLR*HKATFL Trigger: GAGAAAGGTCGCCTTGTGCAAACGCAAAGACTGAAG...CTCTAGTCTAGAGTGAGTTGTGCATGCTGTCCCTGCTCTTTGGGCATAAAGTGC 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000019354.11 ENSMUST00000203783.3 |
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| CDS-3UTR CAA 90 bp | TTACCAGTATTAGAACAGAAAGAGGAAGCCACACAGATAATCTGCTTCTCCAGGCATAGGGATTGCTTTTaGTACTGCGGCCTTCACCAA | + |
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Preference number: 5 (lower is better) Translates to: LPVLEQKEEATQIICFSRHRDCF*YCGLHQ Trigger: TTGGTGAAGGCCGCAGTACAAAAAGCAATCCCTATG...CCTGGAGAAGCAGATTATCTGTGTGGCTTCCTCTTTCTGTTCTAATACTGGTAA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000019354.11 |
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| CDS-3UTR CAA 90 bp | TTACCAGTATTAGAACAGAAAGAGGAAGCCACACAGATAATCTGCTTCTCCAGGGACTTTGAGCCTTGCTaGATTCATCAAGTTGGACAT | + |
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Preference number: 5 (lower is better) Translates to: LPVLEQKEEATQIICFSRDFEPC*IHQVGH Trigger: ATGTCCAACTTGATGAATCAAGCAAGGCTCAAAGTC...CCTGGAGAAGCAGATTATCTGTGTGGCTTCCTCTTTCTGTTCTAATACTGGTAA 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000019354.11 ENSMUST00000203783.3 |
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| CDS-3UTR CAA 90 bp | ATTTACAGAGAAGGAAGACTAGACCTAAACAGTAACAGCGAAGGTAGTGTTCCTGACTTTGAGCCTTGCTaGATTCATCAAGTTGGACAT | + |
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Preference number: 5 (lower is better) Translates to: IYREGRLDLNSNSEGSVPDFEPC*IHQVGH Trigger: ATGTCCAACTTGATGAATCAAGCAAGGCTCAAAGTC...AGGAACACTACCTTCGCTGTTACTGTTTAGGTCTAGTCTTCCTTCTCTGTAAAT 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000019354.11 ENSMUST00000203783.3 |
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| CDS CAA 72 bp | TGCTTTTTGTACTGCGGCCTTCACCAAAGGGAAATCTaGTTTTCTGCAACGCACGATCATTCGAGGCTCCAG | + |
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Preference number: 6 (lower is better) Translates to: CFLYCGLHQREI*FSATHDHSRLQ Trigger: CTGGAGCCTCGAATGATCGTGCGTTGCAGAAAACAAGATTTCCCTTTGGTGAAGGCCGCAGTACAAAAAGCA 49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000019354.11 |
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