Pregenerated sensors for ATP6V1C1 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000022295Ensembl transcript IDs: ENSMUST00000022904.8, ENSMUST00000226533.2, ENSMUST00000228820.2
Found 59 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR TCA 90 bp | AGGCTTCGCGTTAGCAAACTTCCCGCGTTCTTTCGCTCTAAATTCTaGAGATTCCCTTTCAGGTTATTGTATGCAGACGCCCGAGACTTT | + |
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Preference number: 1 (lower is better) Translates to: RLRVSKLPAFFRSKF*RFPFRLLYADARDF Trigger: AAAGTCTCGGGCGTCTGCATACAATAACCTGAAAGGGAATCTTCAGAATTTAGAGCGAAAGAACGCGGGAAGTTTGCTAACGCGAAGCCT 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000226533.2 |
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| 3UTR GCA 90 bp | ACATTGCTTGACCTTGGTACTACCATTTCTGCGAGCGTTTCATACTaGTTAATCCAGTCATTGTGGTTCAGCTTGGGAACTACCACCAGC | + |
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Preference number: 1 (lower is better) Translates to: TLLDLGTTISASVSY*LIQSLWFSLGTTTS Trigger: GCTGGTGGTAGTTCCCAAGCTGAACCACAATGACTGGATTAAGCAGTATGAAACGCTCGCAGAAATGGTAGTACCAAGGTCAAGCAATGT 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000226533.2 |
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| 3UTR CAA 90 bp | TCTGCGAGCGTTTCATACTGCTTAATCCAGTCATTGTGGTTCAGCTaGGGAACTACCACCAGCAATGTGACAAGATACTCCGAATCAAGA | + |
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Preference number: 2 (lower is better) Translates to: SASVSYCLIQSLWFS*GTTTSNVTRYSESR Trigger: TCTTGATTCGGAGTATCTTGTCACATTGCTGGTGGTAGTTCCCAAGCTGAACCACAATGACTGGATTAAGCAGTATGAAACGCTCGCAGA 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000226533.2 |
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| 3UTR-3UTR TCA 90 bp | TCAACAGTTATGTCTACTAATACAGTGAATGAAATGGTATGCTTAGACCATTCCGAGATATGGACCACATaGGAAATTCATCTAGGGGAA | + |
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Preference number: 2 (lower is better) Translates to: STVMSTNTVNEMVCLDHSEIWTT*EIHLGE Trigger: TTCCCCTAGATGAATTTCTCATGTGGTCCATATCTC...GGAATGGTCTAAGCATACCATTTCATTCACTGTATTAGTAGACATAACTGTTGA 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000022904.8 |
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| 3UTR-3UTR CAA 90 bp | AAGTCACACACAGCACAGTGGGCACAGGTTCTTTTATTCTGTCCTGTGGGGTCAAGTTATGAGAGTTACTaGTGTGAGCAACACCAACAC | + |
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Preference number: 3 (lower is better) Translates to: KSHTAQWAQVLLFCPVGSSYESY*CEQHQH Trigger: GTGTTGGTGTTGCTCACACAAGTAACTCTCATAACT...TGACCCCACAGGACAGAATAAAAGAACCTGTGCCCACTGTGCTGTGTGTGACTT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000022904.8 |
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| 3UTR GCA 72 bp | GACCTTGGTACTACCATTTCTGCGAGCGTTTCATACTaGTTAATCCAGTCATTGTGGTTCAGCTTGGGAACT | + |
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Preference number: 3 (lower is better) Translates to: DLGTTISASVSY*LIQSLWFSLGT Trigger: AGTTCCCAAGCTGAACCACAATGACTGGATTAAGCAGTATGAAACGCTCGCAGAAATGGTAGTACCAAGGTC 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000226533.2 |
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| 3UTR-3UTR CAA 90 bp | CACCAGCAATGTGACAAGATACTCCGAATCAAGAACAAAGTCATCTTTCTTCACTTCCCTTTCAGGTTATaGTATGCAGACGCCCGAGAC | + |
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Preference number: 3 (lower is better) Translates to: HQQCDKILRIKNKVIFLHFPFRL*YADARD Trigger: GTCTCGGGCGTCTGCATACAATAACCTGAAAGGGAA...GTGAAGAAAGATGACTTTGTTCTTGATTCGGAGTATCTTGTCACATTGCTGGTG 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000226533.2 |
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| 3UTR TCA 72 bp | CATTGTGGTTCAGCTTGGGAACTACCACCAGCAATGTaGCAAGATACTCCGAATCAAGAACAAAGTCATCTT | + |
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Preference number: 3 (lower is better) Translates to: HCGSAWELPPAM*QDTPNQEQSHL Trigger: AAGATGACTTTGTTCTTGATTCGGAGTATCTTGTCACATTGCTGGTGGTAGTTCCCAAGCTGAACCACAATG 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000226533.2 |
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| CDS-3UTR TCA 90 bp | GAAGCAGCCCAGGAGGCGGCGGCCCCTGGAGCCTCTCAAGTCACACACAGCACAGACTTCTTATTCGGCTaGAGGAGCATTGCTTGGAAG | + |
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Preference number: 4 (lower is better) Translates to: EAAQEAAAPGASQVTHSTDFLFG*RSIAWK Trigger: CTTCCAAGCAATGCTCCTTCAGCCGAATAAGAAGTC...TGTGCTGTGTGTGACTTGAGAGGCTCCAGGGGCCGCCGCCTCCTGGGCTGCTTC 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000022904.8 |
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| CDS-3UTR CCA 90 bp | CCCAGGAGGCGGCGGCCCCTGGAGCCTCTCAAGTCACACACAGCACAGTGGGCATCCTCCTCGTTATACTaGAAGTCACGAACTATGAAC | + |
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Preference number: 4 (lower is better) Translates to: PRRRRPLEPLKSHTAQWASSSLY*KSRTMN Trigger: GTTCATAGTTCGTGACTTCCAGTATAACGAGGAGGA...TGCCCACTGTGCTGTGTGTGACTTGAGAGGCTCCAGGGGCCGCCGCCTCCTGGG 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000022904.8 |
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| CDS-3UTR GCA 90 bp | GCGGCGGCCCCTGGAGCCTCTCAAGTCACACACAGCACAGTGGGCACAGGTTCTGCGAGCGTTTCATACTaGTTAATCCAGTCATTGTGG | + |
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Preference number: 4 (lower is better) Translates to: AAAPGASQVTHSTVGTGSASVSY*LIQSLW Trigger: CCACAATGACTGGATTAAGCAGTATGAAACGCTCGC...AGAACCTGTGCCCACTGTGCTGTGTGTGACTTGAGAGGCTCCAGGGGCCGCCGC 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000022904.8 |
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| CDS-3UTR TCA 90 bp | GGCGGCCCCTGGAGCCTCTCAAGTCACACACAGCACAGTGGGCACAGGTTCTTTGCCAGCAAGTTCTCCTaGACTTTATCTTTGCTGTCC | + |
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Preference number: 4 (lower is better) Translates to: GGPWSLSSHTQHSGHRFFASKFS*TLSLLS Trigger: GGACAGCAAAGATAAAGTTCAGGAGAACTTGCTGGC...AAAGAACCTGTGCCCACTGTGCTGTGTGTGACTTGAGAGGCTCCAGGGGCCGCC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000022904.8 |
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| CDS-3UTR TCA 90 bp | CAAGTCACACACAGCACAGTGGGCACAGGTTCTTTTATTCTGTCCTGTGGGGTCCCATGGGAGCGTCAATaGTGGCAGCCGCACTGCTGT | + |
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Preference number: 4 (lower is better) Translates to: QVTHSTVGTGSFILSCGVPWERQ*WQPHCC Trigger: ACAGCAGTGCGGCTGCCATCATTGACGCTCCCATGG...GACCCCACAGGACAGAATAAAAGAACCTGTGCCCACTGTGCTGTGTGTGACTTG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000022904.8 |
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| CDS-3UTR CCA 90 bp | CGGCGGCCCCTGGAGCCTCTCAAGTCACACACAGCACAGTGGGCACAGGTTCTTTCTGAGTCACTCCCTTaGCAATTATTTCAGAAATAT | + |
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Preference number: 4 (lower is better) Translates to: RRPLEPLKSHTAQWAQVLSESLP*QLFQKY Trigger: ATATTTCTGAAATAATTGCCAAGGGAGTGACTCAGA...AAGAACCTGTGCCCACTGTGCTGTGTGTGACTTGAGAGGCTCCAGGGGCCGCCG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000022904.8 |
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| 3UTR CAA 72 bp | GGAGCAAGCAGAGGGCGTGAGAGTTATGAGAGTTACTaGTGTGAGCAACACCAACACAAGGCCAGGATTGAC | + |
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Preference number: 4 (lower is better) Translates to: GASRGRESYESY*CEQHQHKARID Trigger: GTCAATCCTGGCCTTGTGTTGGTGTTGCTCACACAAGTAACTCTCATAACTCTCACGCCCTCTGCTTGCTCC 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000022904.8 |
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| CDS-3UTR TCA 90 bp | TCTCAAGTCACACACAGCACAGTGGGCACAGGTTCTTTTATTCTGTCCTGTGGGTTCTCCCATGTTTGCTaGCAGGTTTTCTCCCCAGGA | + |
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Preference number: 4 (lower is better) Translates to: SQVTHSTVGTGSFILSCGFSHVC*QVFSPG Trigger: TCCTGGGGAGAAAACCTGTCAGCAAACATGGGAGAA...CCCACAGGACAGAATAAAAGAACCTGTGCCCACTGTGCTGTGTGTGACTTGAGA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000022904.8 |
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| CDS-3UTR GCA 90 bp | ACGATTTCCGCCAGGCTTCGCGTTAGCAAACTTCCCGCGTTCTTTCGCTCTAAACCAAGACATCCAACGTaGCAACCTTTAGGTCAGGAA | + |
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Preference number: 4 (lower is better) Translates to: TISARLRVSKLPAFFRSKPRHPT*QPLGQE Trigger: TTCCTGACCTAAAGGTTGGCACGTTGGATGTCTTGG...TTTAGAGCGAAAGAACGCGGGAAGTTTGCTAACGCGAAGCCTGGCGGAAATCGT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000226533.2 |
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| CDS-3UTR TCA 90 bp | CCGCCAGGCTTCGCGTTAGCAAACTTCCCGCGTTCTTTCGCTCTAAATTCTGAATTAGGTCAGGAATGTTaGACTTGGAAGAGACGGCAA | + |
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Preference number: 4 (lower is better) Translates to: PPGFALANFPRSFALNSELGQEC*TWKRRQ Trigger: TTGCCGTCTCTTCCAAGTTCAACATTCCTGACCTAA...TTCAGAATTTAGAGCGAAAGAACGCGGGAAGTTTGCTAACGCGAAGCCTGGCGG 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000226533.2 |
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| CDS-3UTR TCA 90 bp | CTCTCAAGTCACACACAGCACAGTGGGCACAGGTTCTTTTATTCTGTCCTGTGGAGGTCATTATCGATCTaGGTCACTCCCTTGGCAATT | + |
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Preference number: 4 (lower is better) Translates to: LSSHTQHSGHRFFYSVLWRSLSI*VTPLAI Trigger: AATTGCCAAGGGAGTGACTCAGATCGATAATGACCT...CCACAGGACAGAATAAAAGAACCTGTGCCCACTGTGCTGTGTGTGACTTGAGAG 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000022904.8 |
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| CDS-3UTR GCA 90 bp | GACCCAAATTTGGCACAACTAAATCCTATGCGAGTCAGACAGGAGTGCTCAGAGCCAAGACATCCAACGTaGCAACCTTTAGGTCAGGAA | + |
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Preference number: 4 (lower is better) Translates to: DPNLAQLNPMRVRQECSEPRHPT*QPLGQE Trigger: TTCCTGACCTAAAGGTTGGCACGTTGGATGTCTTGG...CTCTGAGCACTCCTGTCTGACTCGCATAGGATTTAGTTGTGCCAAATTTGGGTC 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000022904.8 |
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| CDS-3UTR GCA 90 bp | CTGGAGCCTCTCAAGTCACACACAGCACAGTGGGCACAGGTTCTTTTATTCTGTCCTGAACTTTATCTTTaGTGTCCTCCAGCACATCAG | + |
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Preference number: 4 (lower is better) Translates to: LEPLKSHTAQWAQVLLFCPELYL*CPPAHQ Trigger: CTGATGTGCTGGAGGACAGCAAAGATAAAGTTCAGG...ACAGAATAAAAGAACCTGTGCCCACTGTGCTGTGTGTGACTTGAGAGGCTCCAG 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000022904.8 |
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| CDS-3UTR GCA 90 bp | AAGTCACACACAGCACAGTGGGCACAGGTTCTTTTATTCTGTCCTGTGGGGTCAACAAGTGGTCCAAACTaGTTCTTCTTGTCAGTAGAC | + |
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Preference number: 4 (lower is better) Translates to: KSHTAQWAQVLLFCPVGSTSGPN*FFLSVD Trigger: GTCTACTGACAAGAAGAAGCAGTTTGGACCACTTGT...TGACCCCACAGGACAGAATAAAAGAACCTGTGCCCACTGTGCTGTGTGTGACTT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000022904.8 |
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| CDS-3UTR GCA 90 bp | AAGATAGTCAGAGCATTCCAAAAGCACACACCTGAACGTTGTCACATAGCACTACGGCTGAAGGAGCATTaGTTGGAAGTTCACCGGCAA | + |
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Preference number: 4 (lower is better) Translates to: KIVRAFQKHTPERCHIALRLKEH*LEVHRQ Trigger: TTGCCGGTGAACTTCCAAGCAATGCTCCTTCAGCCG...TAGTGCTATGTGACAACGTTCAGGTGTGTGCTTTTGGAATGCTCTGACTATCTT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000022904.8 |
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| CDS-3UTR CCA 90 bp | AAGTCACACACAGCACAGTGGGCACAGGTTCTTTTATTCTGTCCTGTGGGGTCATTAATCCAGTCATTGTaGTTCAGCTTGGGAACTACC | + |
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Preference number: 4 (lower is better) Translates to: KSHTAQWAQVLLFCPVGSLIQSL*FSLGTT Trigger: GGTAGTTCCCAAGCTGAACCACAATGACTGGATTAA...TGACCCCACAGGACAGAATAAAAGAACCTGTGCCCACTGTGCTGTGTGTGACTT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000022904.8 |
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| CDS-3UTR GCA 90 bp | CCCAAATTTGGCACAACTAAATCCTATGCGAGTCAGACAGGAGTGCTCAGAGCTCACACCTTCTACAAATaGATCCAGTTTAGCCAGTTC | + |
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Preference number: 4 (lower is better) Translates to: PKFGTTKSYASQTGVLRAHTFYK*IQFSQF Trigger: GAACTGGCTAAACTGGATGCATTTGTAGAAGGTGTG...AGCTCTGAGCACTCCTGTCTGACTCGCATAGGATTTAGTTGTGCCAAATTTGGG 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000022904.8 |
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| CDS-3UTR GCA 90 bp | CCCAAATTTGGCACAACTAAATCCTATGCGAGTCAGACAGGAGTGCTCAGAGCTTGGTACTACCATTTCTaGGAGCGTTTCATACTGCTT | + |
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Preference number: 4 (lower is better) Translates to: PKFGTTKSYASQTGVLRAWYYHF*ERFILL Trigger: AAGCAGTATGAAACGCTCGCAGAAATGGTAGTACCA...AGCTCTGAGCACTCCTGTCTGACTCGCATAGGATTTAGTTGTGCCAAATTTGGG 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000022904.8 |
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| CDS-3UTR CCA 90 bp | CTCTCAAGTCACACACAGCACAGTGGGCACAGGTTCTTTTATTCTGTCCTGTGGCAGAGACTGCTTGATTaGATATTTAGCCATATCCCA | + |
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Preference number: 4 (lower is better) Translates to: LSSHTQHSGHRFFYSVLWQRLLD*IFSHIP Trigger: TGGGATATGGCTAAATATCCAATCAAGCAGTCTCTG...CCACAGGACAGAATAAAAGAACCTGTGCCCACTGTGCTGTGTGTGACTTGAGAG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000022904.8 |
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| 3UTR CAA 72 bp | ATTTCTGCGAGCGTTTCATACTGCTTAATCCAGTCATaGTGGTTCAGCTTGGGAACTACCACCAGCAATGTG | + |
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Preference number: 4 (lower is better) Translates to: ISASVSYCLIQS*WFSLGTTTSNV Trigger: CACATTGCTGGTGGTAGTTCCCAAGCTGAACCACAATGACTGGATTAAGCAGTATGAAACGCTCGCAGAAAT 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000226533.2 |
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| CDS-3UTR CCA 90 bp | CCAAATTTGGCACAACTAAATCCTATGCGAGTCAGACAGGAGTGCTCAGAGCTCGATTATTGTTCTTGGTaGTCGCTGCATGTAGTTTCT | + |
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Preference number: 4 (lower is better) Translates to: PNLAQLNPMRVRQECSELDYCSW*SLHVVS Trigger: AGAAACTACATGCAGCGACCACCAAGAACAATAATC...GAGCTCTGAGCACTCCTGTCTGACTCGCATAGGATTTAGTTGTGCCAAATTTGG 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000022904.8 |
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| CDS-3UTR CCA 90 bp | AAGATAGTCAGAGCATTCCAAAAGCACACACCTGAACGTTGTCACATAGCACTACATTGTGGTTCAGCTTaGGAACTACCACCAGCAATG | + |
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Preference number: 4 (lower is better) Translates to: KIVRAFQKHTPERCHIALHCGSA*ELPPAM Trigger: CATTGCTGGTGGTAGTTCCCAAGCTGAACCACAATG...TAGTGCTATGTGACAACGTTCAGGTGTGTGCTTTTGGAATGCTCTGACTATCTT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000022904.8 |
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| 3UTR CAA 72 bp | GTTTCATACTGCTTAATCCAGTCATTGTGGTTCAGCTaGGGAACTACCACCAGCAATGTGACAAGATACTCC | + |
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Preference number: 4 (lower is better) Translates to: VSYCLIQSLWFS*GTTTSNVTRYS Trigger: GGAGTATCTTGTCACATTGCTGGTGGTAGTTCCCAAGCTGAACCACAATGACTGGATTAAGCAGTATGAAAC 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000226533.2 |
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| CDS-3UTR TCA 90 bp | AAGATAGTCAGAGCATTCCAAAAGCACACACCTGAACGTTGTCACATAGCACTATTAGGTCAGGAATGTTaGACTTGGAAGAGACGGCAA | + |
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Preference number: 4 (lower is better) Translates to: KIVRAFQKHTPERCHIALLGQEC*TWKRRQ Trigger: TTGCCGTCTCTTCCAAGTTCAACATTCCTGACCTAA...TAGTGCTATGTGACAACGTTCAGGTGTGTGCTTTTGGAATGCTCTGACTATCTT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000022904.8 |
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| CDS-3UTR TCA 90 bp | AGCAATGTGACAAGATACTCCGAATCAAGAACAAAGTCATCTTTCTTCACGATTTTCTCCCATGTTTGCTaGCAGGTTTTCTCCCCAGGA | + |
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Preference number: 4 (lower is better) Translates to: SNVTRYSESRTKSSFFTIFSHVC*QVFSPG Trigger: TCCTGGGGAGAAAACCTGTCAGCAAACATGGGAGAA...AATCGTGAAGAAAGATGACTTTGTTCTTGATTCGGAGTATCTTGTCACATTGCT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000226533.2 |
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| CDS-3UTR GCA 90 bp | TACCATTTCTGCGAGCGTTTCATACTGCTTAATCCAGTCATTGTGGTTCAGCTTCACACCTTCTACAAATaGATCCAGTTTAGCCAGTTC | + |
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Preference number: 4 (lower is better) Translates to: YHFCERFILLNPVIVVQLHTFYK*IQFSQF Trigger: GAACTGGCTAAACTGGATGCATTTGTAGAAGGTGTG...AAGCTGAACCACAATGACTGGATTAAGCAGTATGAAACGCTCGCAGAAATGGTA 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000226533.2 |
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| CDS-3UTR GCA 90 bp | CCCAAATTTGGCACAACTAAATCCTATGCGAGTCAGACAGGAGTGCTCAGAGCTTCTGAAATCATCAACTaGTTTTCTAAACAAGGTGAC | + |
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Preference number: 4 (lower is better) Translates to: PKFGTTKSYASQTGVLRASEIIN*FSKQGD Trigger: GTCACCTTGTTTAGAAAAGCAGTTGATGATTTCAGA...AGCTCTGAGCACTCCTGTCTGACTCGCATAGGATTTAGTTGTGCCAAATTTGGG 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000022904.8 |
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| CDS-3UTR CCA 90 bp | CAGCTTGGGAACTACCACCAGCAATGTGACAAGATACTCCGAATCAAGAACAAAGATTATTGTTCTTGGTaGTCGCTGCATGTAGTTTCT | + |
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Preference number: 4 (lower is better) Translates to: QLGNYHQQCDKILRIKNKDYCSW*SLHVVS Trigger: AGAAACTACATGCAGCGACCACCAAGAACAATAATC...TTTGTTCTTGATTCGGAGTATCTTGTCACATTGCTGGTGGTAGTTCCCAAGCTG 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000226533.2 |
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| CDS-3UTR TCA 90 bp | TCAACAGTTATGTCTACTAATACAGTGAATGAAATGGTATGCTTAGACCATTCCGGAAGTCACGAACTATaGACTTGTTTTCTCTGGCTT | + |
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Preference number: 4 (lower is better) Translates to: STVMSTNTVNEMVCLDHSGSHEL*TCFLWL Trigger: AAGCCAGAGAAAACAAGTTCATAGTTCGTGACTTCC...GGAATGGTCTAAGCATACCATTTCATTCACTGTATTAGTAGACATAACTGTTGA 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000022904.8 |
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| CDS-3UTR CAA 90 bp | CCCAGGAGGCGGCGGCCCCTGGAGCCTCTCAAGTCACACACAGCACAGTGGGCATCAGGAATGTTGAACTaGGAAGAGACGGCAAGATTA | + |
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Preference number: 5 (lower is better) Translates to: PRRRRPLEPLKSHTAQWASGMLN*EETARL Trigger: TAATCTTGCCGTCTCTTCCAAGTTCAACATTCCTGA...TGCCCACTGTGCTGTGTGTGACTTGAGAGGCTCCAGGGGCCGCCGCCTCCTGGG 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000022904.8 |
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| CDS-3UTR CAA 90 bp | CCCAGGAGGCGGCGGCCCCTGGAGCCTCTCAAGTCACACACAGCACAGTGGGCATCACGAACTATGAACTaGTTTTCTCTGGCTTTGTGT | + |
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Preference number: 5 (lower is better) Translates to: PRRRRPLEPLKSHTAQWASRTMN*FSLALC Trigger: ACACAAAGCCAGAGAAAACAAGTTCATAGTTCGTGA...TGCCCACTGTGCTGTGTGTGACTTGAGAGGCTCCAGGGGCCGCCGCCTCCTGGG 57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000022904.8 |
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| CDS-3UTR CAA 90 bp | GGCGGCCCCTGGAGCCTCTCAAGTCACACACAGCACAGTGGGCACAGGTTCTTTGAACATTGCTTGACCTaGGTACTACCATTTCTGCGA | + |
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Preference number: 5 (lower is better) Translates to: GGPWSLSSHTQHSGHRFFEHCLT*VLPFLR Trigger: TCGCAGAAATGGTAGTACCAAGGTCAAGCAATGTTC...AAAGAACCTGTGCCCACTGTGCTGTGTGTGACTTGAGAGGCTCCAGGGGCCGCC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000022904.8 |
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| CDS-3UTR CAA 90 bp | GGCGGCCCCTGGAGCCTCTCAAGTCACACACAGCACAGTGGGCACAGGTTCTTTCTGAAAGAACATTGCTaGACCTTGGTACTACCATTT | + |
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Preference number: 5 (lower is better) Translates to: GGPWSLSSHTQHSGHRFFLKEHC*TLVLPF Trigger: AAATGGTAGTACCAAGGTCAAGCAATGTTCTTTCAG...AAAGAACCTGTGCCCACTGTGCTGTGTGTGACTTGAGAGGCTCCAGGGGCCGCC 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000022904.8 |
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| CDS-3UTR CAA 90 bp | GACCCAAATTTGGCACAACTAAATCCTATGCGAGTCAGACAGGAGTGCTCAGAGTTCCCTTTCAGGTTATaGTATGCAGACGCCCGAGAC | + |
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Preference number: 5 (lower is better) Translates to: DPNLAQLNPMRVRQECSEFPFRL*YADARD Trigger: GTCTCGGGCGTCTGCATACAATAACCTGAAAGGGAA...CTCTGAGCACTCCTGTCTGACTCGCATAGGATTTAGTTGTGCCAAATTTGGGTC 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000022904.8 |
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| CDS TCA 90 bp | TTATTGTTCTTGGTGGTCGCTGCATGTAGTTTCTCCCATGTTTGCTaGCAGGTTTTCTCCCCAGGAGCAGATATGAGCCAGAACTCAGTC | + |
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Preference number: 5 (lower is better) Translates to: LLFLVVAACSFSHVC*QVFSPGADMSQNSV Trigger: GACTGAGTTCTGGCTCATATCTGCTCCTGGGGAGAAAACCTGTCAGCAAACATGGGAGAAACTACATGCAGCGACCACCAAGAACAATAA 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000022904.8 ENSMUST00000226533.2 ENSMUST00000228820.2 |
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| CDS-3UTR CAA 90 bp | AAGTCACACACAGCACAGTGGGCACAGGTTCTTTTATTCTGTCCTGTGGGGTCATCCTCTGAAAGAACATaGCTTGACCTTGGTACTACC | + |
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Preference number: 5 (lower is better) Translates to: KSHTAQWAQVLLFCPVGSSSERT*LDLGTT Trigger: GGTAGTACCAAGGTCAAGCAATGTTCTTTCAGAGGA...TGACCCCACAGGACAGAATAAAAGAACCTGTGCCCACTGTGCTGTGTGTGACTT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000022904.8 |
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| CDS-3UTR CAA 90 bp | TTTCCGCCAGGCTTCGCGTTAGCAAACTTCCCGCGTTCTTTCGCTCTAAATTCTTCAGGAATGTTGAACTaGGAAGAGACGGCAAGATTA | + |
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Preference number: 5 (lower is better) Translates to: FPPGFALANFPRSFALNSSGMLN*EETARL Trigger: TAATCTTGCCGTCTCTTCCAAGTTCAACATTCCTGA...AGAATTTAGAGCGAAAGAACGCGGGAAGTTTGCTAACGCGAAGCCTGGCGGAAA 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000226533.2 |
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| CDS-3UTR CAA 90 bp | CCCAAATTTGGCACAACTAAATCCTATGCGAGTCAGACAGGAGTGCTCAGAGCTTTGTTTTCTCTGGCTTaGTGTCTGAAATCATCAACT | + |
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Preference number: 5 (lower is better) Translates to: PKFGTTKSYASQTGVLRALFSLA*CLKSST Trigger: AGTTGATGATTTCAGACACAAAGCCAGAGAAAACAA...AGCTCTGAGCACTCCTGTCTGACTCGCATAGGATTTAGTTGTGCCAAATTTGGG 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000022904.8 |
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| CDS GCA 90 bp | CTGCTTCTTCTTGTCAGTAGACAGCCTGGTCATTTCTTCTTTATCTaGTTTCATCTCCTCCTCGTTATACTGGAAGTCACGAACTATGAA | + |
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Preference number: 5 (lower is better) Translates to: LLLLVSRQPGHFFFI*FHLLLVILEVTNYE Trigger: TTCATAGTTCGTGACTTCCAGTATAACGAGGAGGAGATGAAAGCAGATAAAGAAGAAATGACCAGGCTGTCTACTGACAAGAAGAAGCAG 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000022904.8 |
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| CDS TCA 72 bp | TCAGGTTTAGGCCAGGGATATCCATGGGAGCGTCAATaGTGGCAGCCGCACTGCTGTCCAGATGCTTGTACA | + |
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Preference number: 6 (lower is better) Translates to: SGLGQGYPWERQ*WQPHCCPDACT Trigger: TGTACAAGCATCTGGACAGCAGTGCGGCTGCCATCATTGACGCTCCCATGGATATCCCTGGCCTAAACCTGA 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000022904.8 |
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| CDS TCA 72 bp | TCTGAGTCACTCCCTCCGCTGGCCAGCAAGTTCTCCTaGACTTTATCTTTGCTGTCCTCCAGCACATCAGCC | + |
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Preference number: 6 (lower is better) Translates to: SESLPPLASKFS*TLSLLSSSTSA Trigger: GGCTGATGTGCTGGAGGACAGCAAAGATAAAGTTCAGGAGAACTTGCTGGCCAGCGGAGGGAGTGACTCAGA 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000226533.2 |
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| CDS TCA 72 bp | TTGGTGGTCGCTGCATGTAGTTTCTCCCATGTTTGCTaGCAGGTTTTCTCCCCAGGAGCAGATATGAGCCAG | + |
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Preference number: 6 (lower is better) Translates to: LVVAACSFSHVC*QVFSPGADMSQ Trigger: CTGGCTCATATCTGCTCCTGGGGAGAAAACCTGTCAGCAAACATGGGAGAAACTACATGCAGCGACCACCAA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000022904.8 ENSMUST00000226533.2 ENSMUST00000228820.2 |
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| CDS TCA 72 bp | GTAACCAAGTCAACTCCGCTGGCCAGCAAGTTCTCCTaGACTTTATCTTTGCTGTCCTCCAGCACATCAGCC | + |
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Preference number: 6 (lower is better) Translates to: VTKSTPLASKFS*TLSLLSSSTSA Trigger: GGCTGATGTGCTGGAGGACAGCAAAGATAAAGTTCAGGAGAACTTGCTGGCCAGCGGAGTTGACTTGGTTAC 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000022904.8 |
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| CDS CCA 72 bp | CGCCTCACTGAAATTCACTTTAAGCCACCGCACAAGTaGTCCAAACTGCTTCTTCTTGTCAGTAGACAGCCT | + |
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Preference number: 6 (lower is better) Translates to: RLTEIHFKPPHK*SKLLLLVSRQP Trigger: AGGCTGTCTACTGACAAGAAGAAGCAGTTTGGACCACTTGTGCGGTGGCTTAAAGTGAATTTCAGTGAGGCG 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000022904.8 |
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| CDS GCA 72 bp | GTACTGAGCCACTTTCTTGACCACACCTTCTACAAATaGATCCAGTTTAGCCAGTTCATCCGACAAGCCAAC | + |
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Preference number: 6 (lower is better) Translates to: VLSHFLDHTFYK*IQFSQFIRQAN Trigger: GTTGGCTTGTCGGATGAACTGGCTAAACTGGATGCATTTGTAGAAGGTGTGGTCAAGAAAGTGGCTCAGTAC 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000022904.8 ENSMUST00000226533.2 |
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| CDS TCA 72 bp | AGACATCCAACGTGCCAACCTTTAGGTCAGGAATGTTaGACTTGGAAGAGACGGCAAGATTATTGTTCTTGG | + |
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Preference number: 6 (lower is better) Translates to: RHPTCQPLGQEC*TWKRRQDYCSW Trigger: CCAAGAACAATAATCTTGCCGTCTCTTCCAAGTTCAACATTCCTGACCTAAAGGTTGGCACGTTGGATGTCT 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000022904.8 ENSMUST00000226533.2 |
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| CDS GCA 72 bp | CTTGTCAGTAGACAGCCTGGTCATTTCTTCTTTATCTaGTTTCATCTCCTCCTCGTTATACTGGAAGTCACG | + |
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Preference number: 6 (lower is better) Translates to: LVSRQPGHFFFI*FHLLLVILEVT Trigger: CGTGACTTCCAGTATAACGAGGAGGAGATGAAAGCAGATAAAGAAGAAATGACCAGGCTGTCTACTGACAAG 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000022904.8 |
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| CDS GCA 72 bp | AAATTCACTTTAAGCCACCGCACAAGTGGTCCAAACTaGTTCTTCTTGTCAGTAGACAGCCTGGTCATTTCT | + |
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Preference number: 6 (lower is better) Translates to: KFTLSHRTSGPN*FFLSVDSLVIS Trigger: AGAAATGACCAGGCTGTCTACTGACAAGAAGAAGCAGTTTGGACCACTTGTGCGGTGGCTTAAAGTGAATTT 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000022904.8 |
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| CDS CAA 72 bp | ATGTTGAACTTGGAAGAGACGGCAAGATTATTGTTCTaGGTGGTCGCTGCATGTAGTTTCTCCCATGTTTGC | + |
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Preference number: 6 (lower is better) Translates to: MLNLEETARLLF*VVAACSFSHVC Trigger: GCAAACATGGGAGAAACTACATGCAGCGACCACCAAGAACAATAATCTTGCCGTCTCTTCCAAGTTCAACAT 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000022904.8 ENSMUST00000226533.2 |
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| CDS CAA 72 bp | TCAGGAATGTTGAACTTGGAAGAGACGGCAAGATTATaGTTCTTGGTGGTCGCTGCATGTAGTTTCTCCCAT | + |
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Preference number: 6 (lower is better) Translates to: SGMLNLEETARL*FLVVAACSFSH Trigger: ATGGGAGAAACTACATGCAGCGACCACCAAGAACAATAATCTTGCCGTCTCTTCCAAGTTCAACATTCCTGA 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000022904.8 ENSMUST00000226533.2 |
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| CDS CAA 72 bp | TTAAGCCACCGCACAAGTGGTCCAAACTGCTTCTTCTaGTCAGTAGACAGCCTGGTCATTTCTTCTTTATCT | + |
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Preference number: 6 (lower is better) Translates to: LSHRTSGPNCFF*SVDSLVISSLS Trigger: AGATAAAGAAGAAATGACCAGGCTGTCTACTGACAAGAAGAAGCAGTTTGGACCACTTGTGCGGTGGCTTAA 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000022904.8 |
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