Pregenerated sensors for ATP6V1B2 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000006273Ensembl transcript IDs: ENSMUST00000006435.8
Found 53 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR TCA 90 bp | AGGCGTGCCACCACTGCAGGAGAACGCAGGCTGTGCAATGTTACCTaGTTCTCTGTGGGCCTCAGAGAAAGTCGCCACGCAGGAATTCCC | + |
|
Preference number: 1 (lower is better) Translates to: RRATTAGERRLCNVT*FSVGLRESRHAGIP Trigger: GGGAATTCCTGCGTGGCGACTTTCTCTGAGGCCCACAGAGAATCAGGTAACATTGCACAGCCTGCGTTCTCCTGCAGTGGTGGCACGCCT 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000006435.8 |
||
| 3UTR CCA 90 bp | ACTACCCCCTCAGAGAAAAACAACTGGAAGGTGGAATGCACAGAGTaGGGAGTCATGGCTGCACCTGAGAACACACAGCGCAGAGACCCA | + |
|
Preference number: 1 (lower is better) Translates to: TTPSEKNNWKVECTE*GVMAAPENTQRRDP Trigger: TGGGTCTCTGCGCTGTGTGTTCTCAGGTGCAGCCATGACTCCCCACTCTGTGCATTCCACCTTCCAGTTGTTTTTCTCTGAGGGGGTAGT 54% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000006435.8 |
||
| 3UTR CCA 90 bp | CAGAGAAAAACAACTGGAAGGTGGAATGCACAGAGTGGGGAGTCATaGCTGCACCTGAGAACACACAGCGCAGAGACCCAAACAGCAGAC | + |
|
Preference number: 1 (lower is better) Translates to: QRKTTGRWNAQSGES*LHLRTHSAETQTAD Trigger: GTCTGCTGTTTGGGTCTCTGCGCTGTGTGTTCTCAGGTGCAGCCATGACTCCCCACTCTGTGCATTCCACCTTCCAGTTGTTTTTCTCTG 53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000006435.8 |
||
| 3UTR CCA 90 bp | GGCAACGCAGAAACCGAAACCACCAGAAACGCGTCAAGAGGAGGGTaGGATGTAGGGTTTTTCTTAATTGTACCCAAGCCTTTTCCAAGT | + |
|
Preference number: 1 (lower is better) Translates to: GNAETETTRNASRGG*DVGFFLIVPKPFPS Trigger: ACTTGGAAAAGGCTTGGGTACAATTAAGAAAAACCCTACATCCCACCCTCCTCTTGACGCGTTTCTGGTGGTTTCGGTTTCTGCGTTGCC 49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000006435.8 |
||
| 3UTR TCA 90 bp | GCACACAGAATACAGCCAAGAGCTCAAGCCAGGAAGGGACAGGAATaGAAGAAACATTGCTACATGTGCCACAAGATCACCCAGAAAAGG | + |
|
Preference number: 1 (lower is better) Translates to: AHRIQPRAQARKGQE*KKHCYMCHKITQKR Trigger: CCTTTTCTGGGTGATCTTGTGGCACATGTAGCAATGTTTCTTTCATTCCTGTCCCTTCCTGGCTTGAGCTCTTGGCTGTATTCTGTGTGC 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000006435.8 |
||
| 3UTR-3UTR TCA 90 bp | TCAGCACAAGGCGTGCCACCACTGCAGGAGAACGCAGGCTGTGCAATGTTACCTGCCTCGTGGTTCTTCTaGAAGGAGAATTCTTCCAGT | + |
|
Preference number: 2 (lower is better) Translates to: SAQGVPPLQENAGCAMLPASWFF*KENSSS Trigger: ACTGGAAGAATTCTCCTTTCAGAAGAACCACGAGGC...AGGTAACATTGCACAGCCTGCGTTCTCCTGCAGTGGTGGCACGCCTTGTGCTGA 53% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000006435.8 |
||
| 3UTR CAA 90 bp | ACAGCCAAGAGCTCAAGCCAGGAAGGGACAGGAATGAAAGAAACATaGCTACATGTGCCACAAGATCACCCAGAAAAGGTAGAGCGGACT | + |
|
Preference number: 2 (lower is better) Translates to: TAKSSSQEGTGMKET*LHVPQDHPEKVERT Trigger: AGTCCGCTCTACCTTTTCTGGGTGATCTTGTGGCACATGTAGCAATGTTTCTTTCATTCCTGTCCCTTCCTGGCTTGAGCTCTTGGCTGT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000006435.8 |
||
| 3UTR CAA 90 bp | GAGCCTCGTGGTTCTTCTGAAAGGAGAATTCTTCCAGTCTCCACTTaGCCCCTAAATTTGAGACTGAAGCATTTTAGCTTCAGAACAGTG | + |
|
Preference number: 2 (lower is better) Translates to: EPRGSSERRILPVST*PLNLRLKHFSFRTV Trigger: CACTGTTCTGAAGCTAAAATGCTTCAGTCTCAAATTTAGGGGCAAAGTGGAGACTGGAAGAATTCTCCTTTCAGAAGAACCACGAGGCTC 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000006435.8 |
||
| 3UTR TCA 72 bp | GGTGGAATGCACAGAGTGGGGAGTCATGGCTGCACCTaGGAACACACAGCGCAGAGACCCAAACAGCAGACA | + |
|
Preference number: 3 (lower is better) Translates to: GGMHRVGSHGCT*EHTAQRPKQQT Trigger: TGTCTGCTGTTTGGGTCTCTGCGCTGTGTGTTCTCAGGTGCAGCCATGACTCCCCACTCTGTGCATTCCACC 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000006435.8 |
||
| 3UTR CCA 72 bp | TTTCCAAGTCTCAATTCTCCTGTGACTGTAGCCCAGTaGGGGTCGTCAGCACAAGGCGTGCCACCACTGCAG | + |
|
Preference number: 3 (lower is better) Translates to: FPSLNSPVTVAQ*GSSAQGVPPLQ Trigger: CTGCAGTGGTGGCACGCCTTGTGCTGACGACCCCCACTGGGCTACAGTCACAGGAGAATTGAGACTTGGAAA 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000006435.8 |
||
| 3UTR TCA 72 bp | CCAGAGGGAGGCTCAGCCAGAGCCTCGTGGTTCTTCTaGAAGGAGAATTCTTCCAGTCTCCACTTTGCCCCT | + |
|
Preference number: 3 (lower is better) Translates to: PEGGSARASWFF*KENSSSLHFAP Trigger: AGGGGCAAAGTGGAGACTGGAAGAATTCTCCTTTCAGAAGAACCACGAGGCTCTGGCTGAGCCTCCCTCTGG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000006435.8 |
||
| 3UTR CCA 72 bp | TCAGAGAAAAACAACTGGAAGGTGGAATGCACAGAGTaGGGAGTCATGGCTGCACCTGAGAACACACAGCGC | + |
|
Preference number: 3 (lower is better) Translates to: SEKNNWKVECTE*GVMAAPENTQR Trigger: GCGCTGTGTGTTCTCAGGTGCAGCCATGACTCCCCACTCTGTGCATTCCACCTTCCAGTTGTTTTTCTCTGA 53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000006435.8 |
||
| 3UTR CCA 72 bp | GAAAGTCGCCACGCAGGAATTCCCAACTCACAGCACTaGCAGAACGAAACTCTTTTCGTAAGAAAACACAGC | + |
|
Preference number: 3 (lower is better) Translates to: ESRHAGIPNSQH*QNETLFVRKHS Trigger: GCTGTGTTTTCTTACGAAAAGAGTTTCGTTCTGCCAGTGCTGTGAGTTGGGAATTCCTGCGTGGCGACTTTC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000006435.8 |
||
| 3UTR CCA 72 bp | GAAACCGAAACCACCAGAAACGCGTCAAGAGGAGGGTaGGATGTAGGGTTTTTCTTAATTGTACCCAAGCCT | + |
|
Preference number: 3 (lower is better) Translates to: ETETTRNASRGG*DVGFFLIVPKP Trigger: AGGCTTGGGTACAATTAAGAAAAACCCTACATCCCACCCTCCTCTTGACGCGTTTCTGGTGGTTTCGGTTTC 49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000006435.8 |
||
| 3UTR TCA 72 bp | ATACAGCCAAGAGCTCAAGCCAGGAAGGGACAGGAATaGAAGAAACATTGCTACATGTGCCACAAGATCACC | + |
|
Preference number: 3 (lower is better) Translates to: IQPRAQARKGQE*KKHCYMCHKIT Trigger: GGTGATCTTGTGGCACATGTAGCAATGTTTCTTTCATTCCTGTCCCTTCCTGGCTTGAGCTCTTGGCTGTAT 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000006435.8 |
||
| 3UTR-3UTR CAA 90 bp | ACATTGCTACATGTGCCACAAGATCACCCAGAAAAGGTAGAGCGGACTCAGAAAACTTTGCCCCTAAATTaGAGACTGAAGCATTTTAGC | + |
|
Preference number: 3 (lower is better) Translates to: TLLHVPQDHPEKVERTQKTLPLN*RLKHFS Trigger: GCTAAAATGCTTCAGTCTCAAATTTAGGGGCAAAGT...TTTCTGAGTCCGCTCTACCTTTTCTGGGTGATCTTGTGGCACATGTAGCAATGT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt. Matches the following 1 transcripts: ENSMUST00000006435.8 |
||
| CDS-3UTR GCA 90 bp | AGAGGCACACAGAATACAGCCAAGAGCTCAAGCCAGGAAGGGACAGGAATGAAACTCACCGCCAGCGCCTaGTCCCGAGCTCCGGCCATC | + |
|
Preference number: 4 (lower is better) Translates to: RGTQNTAKSSSQEGTGMKLTASA*SRAPAI Trigger: GATGGCCGGAGCTCGGGAGCAGGCGCTGGCGGTGAG...TTTCATTCCTGTCCCTTCCTGGCTTGAGCTCTTGGCTGTATTCTGTGTGCCTCT 59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000006435.8 |
||
| CDS-3UTR CCA 90 bp | ACAGCAGACAGTAAAACCCATCTGCACAGAGCAGAGGACAGACCCACAGGTACACCAGAAACTCGGCCGTaGTCAGAGCCAGGCGAGGAG | + |
|
Preference number: 4 (lower is better) Translates to: TADSKTHLHRAEDRPTGTPETRP*SEPGEE Trigger: CTCCTCGCCTGGCTCTGACCACGGCCGAGTTTCTGG...TGTACCTGTGGGTCTGTCCTCTGCTCTGTGCAGATGGGTTTTACTGTCTGCTGT 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000006435.8 |
||
| CDS-3UTR CCA 90 bp | TCAGCACAAGGCGTGCCACCACTGCAGGAGAACGCAGGCTGTGCAATGTTACCTCCACCACGGCTTTCATaGCTTGCACGTCCTTACCGA | + |
|
Preference number: 4 (lower is better) Translates to: SAQGVPPLQENAGCAMLPPPRLS*LARPYR Trigger: TCGGTAAGGACGTGCAAGCCATGAAAGCCGTGGTGG...AGGTAACATTGCACAGCCTGCGTTCTCCTGCAGTGGTGGCACGCCTTGTGCTGA 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000006435.8 |
||
| CDS-3UTR TCA 90 bp | ACCCACAGGTACACTAGCACTCCAGAGGGAGGCTCAGCCAGAGCCTCGTGGTTCGTCAATGGGTTTTCCTaGTCCGTTGAATACTCGACC | + |
|
Preference number: 4 (lower is better) Translates to: THRYTSTPEGGSARASWFVNGFS*SVEYST Trigger: GGTCGAGTATTCAACGGATCAGGAAAACCCATTGAC...GAACCACGAGGCTCTGGCTGAGCCTCCCTCTGGAGTGCTAGTGTACCTGTGGGT 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000006435.8 |
||
| CDS-3UTR CCA 90 bp | ACAGCAGACAGTAAAACCCATCTGCACAGAGCAGAGGACAGACCCACAGGTACAGGTATACATGTAGCCTaGGAAGCCTCGCCGACCAGG | + |
|
Preference number: 4 (lower is better) Translates to: TADSKTHLHRAEDRPTGTGIHVA*EASPTR Trigger: CCTGGTCGGCGAGGCTTCCCAGGCTACATGTATACC...TGTACCTGTGGGTCTGTCCTCTGCTCTGTGCAGATGGGTTTTACTGTCTGCTGT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000006435.8 |
||
| CDS-3UTR TCA 90 bp | CCTCAGAGAAAAACAACTGGAAGGTGGAATGCACAGAGTGGGGAGTCATGGCTGGCCTGGCGACAGATCTaGGCTGCAATCTCGTTGTGT | + |
|
Preference number: 4 (lower is better) Translates to: PQRKTTGRWNAQSGESWLAWRQI*AAISLC Trigger: ACACAACGAGATTGCAGCTCAGATCTGTCGCCAGGC...CAGCCATGACTCCCCACTCTGTGCATTCCACCTTCCAGTTGTTTTTCTCTGAGG 53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000006435.8 |
||
| CDS-3UTR GCA 90 bp | CACTCCAGAGGGAGGCTCAGCCAGAGCCTCGTGGTTCTTCTGAAAGGAGAATTCCATCGATGGCGGAAATaGCCGTCTGAATCATCTCTT | + |
|
Preference number: 4 (lower is better) Translates to: HSRGRLSQSLVVLLKGEFHRWRK*PSESSL Trigger: AAGAGATGATTCAGACGGGCATTTCCGCCATCGATG...GAATTCTCCTTTCAGAAGAACCACGAGGCTCTGGCTGAGCCTCCCTCTGGAGTG 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000006435.8 |
||
| CDS-3UTR CCA 90 bp | TACATCAGTAAGCAAACTTCACCCCTCAGCTTCTTTAAAGAAAGCACTAAAGGTCCATCGGCCCACCGGTaGGCACGGGCAGTTCGGGTG | + |
|
Preference number: 4 (lower is better) Translates to: YISKQTSPLSFFKESTKGPSAHR*ARAVRV Trigger: CACCCGAACTGCCCGTGCCCACCGGTGGGCCGATGG...ACCTTTAGTGCTTTCTTTAAAGAAGCTGAGGGGTGAAGTTTGCTTACTGATGTA 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000006435.8 |
||
| CDS-3UTR CCA 90 bp | GAGCCTCGTGGTTCTTCTGAAAGGAGAATTCTTCCAGTCTCCACTTTGCCCCTAGCACGTCCTTACCGATaGCATAGCACGCATACAACT | + |
|
Preference number: 4 (lower is better) Translates to: EPRGSSERRILPVSTLPLARPYR*HSTHTT Trigger: AGTTGTATGCGTGCTATGCCATCGGTAAGGACGTGC...TAGGGGCAAAGTGGAGACTGGAAGAATTCTCCTTTCAGAAGAACCACGAGGCTC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000006435.8 |
||
| CDS-3UTR TCA 90 bp | CCTCAGAGAAAAACAACTGGAAGGTGGAATGCACAGAGTGGGGAGTCATGGCTGCTGGGAAACTTCACATaGTCTAGGATCACTAGTGGA | + |
|
Preference number: 4 (lower is better) Translates to: PQRKTTGRWNAQSGESWLLGNFT*SRITSG Trigger: TCCACTAGTGATCCTAGATCATGTGAAGTTTCCCAG...CAGCCATGACTCCCCACTCTGTGCATTCCACCTTCCAGTTGTTTTTCTCTGAGG 49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000006435.8 |
||
| CDS-3UTR CCA 90 bp | AGAGGCACACAGAATACAGCCAAGAGCTCAAGCCAGGAAGGGACAGGAATGAAAACACTGAGGGTTGATTaGCTGACCCATGATGTCAAG | + |
|
Preference number: 4 (lower is better) Translates to: RGTQNTAKSSSQEGTGMKTLRVD*LTHDVK Trigger: CTTGACATCATGGGTCAGCCAATCAACCCTCAGTGT...TTTCATTCCTGTCCCTTCCTGGCTTGAGCTCTTGGCTGTATTCTGTGTGCCTCT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000006435.8 |
||
| CDS-3UTR CCA 90 bp | CACTCCAGAGGGAGGCTCAGCCAGAGCCTCGTGGTTCTTCTGAAAGGAGAATTCTCTTCAGCATTTCTTTaGGGAAGATTCGAAGCAACT | + |
|
Preference number: 4 (lower is better) Translates to: HSRGRLSQSLVVLLKGEFSSAFL*GRFEAT Trigger: AGTTGCTTCGAATCTTCCCCAAAGAAATGCTGAAGA...GAATTCTCCTTTCAGAAGAACCACGAGGCTCTGGCTGAGCCTCCCTCTGGAGTG 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000006435.8 |
||
| CDS-3UTR TCA 90 bp | AGAAACGCGTCAAGAGGAGGGTGGGATGTAGGGTTTTTCTTAATTGTACCCAAGGTCCCTTCAAATACCTaGACCACTGCTTTGGAGCCA | + |
|
Preference number: 4 (lower is better) Translates to: RNASRGGWDVGFFLIVPKVPSNT*TTALEP Trigger: TGGCTCCAAAGCAGTGGTTCAGGTATTTGAAGGGAC...CTTGGGTACAATTAAGAAAAACCCTACATCCCACCCTCCTCTTGACGCGTTTCT 48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000006435.8 |
||
| CDS-3UTR CCA 90 bp | AGAAACGCGTCAAGAGGAGGGTGGGATGTAGGGTTTTTCTTAATTGTACCCAAGTGTTCATGCCATCGATaGCGGAAATGCCCGTCTGAA | + |
|
Preference number: 4 (lower is better) Translates to: RNASRGGWDVGFFLIVPKCSCHR*RKCPSE Trigger: TTCAGACGGGCATTTCCGCCATCGATGGCATGAACA...CTTGGGTACAATTAAGAAAAACCCTACATCCCACCCTCCTCTTGACGCGTTTCT 48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000006435.8 |
||
| CDS-3UTR CCA 90 bp | AGAGGCACACAGAATACAGCCAAGAGCTCAAGCCAGGAAGGGACAGGAATGAAAGATCCGCTCAATGGTTaGGTCATTAGCCAGATTCAA | + |
|
Preference number: 4 (lower is better) Translates to: RGTQNTAKSSSQEGTGMKDPLNG*VISQIQ Trigger: TTGAATCTGGCTAATGACCCAACCATTGAGCGGATC...TTTCATTCCTGTCCCTTCCTGGCTTGAGCTCTTGGCTGTATTCTGTGTGCCTCT 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000006435.8 |
||
| CDS-3UTR CCA 90 bp | GCTCAGCCAGAGCCTCGTGGTTCTTCTGAAAGGAGAATTCTTCCAGTCTCCACTAGTCCACTACATCTTTaGATTTCTTTACCAAACCAG | + |
|
Preference number: 4 (lower is better) Translates to: AQPEPRGSSERRILPVSTSPLHL*ISLPNQ Trigger: CTGGTTTGGTAAAGAAATCCAAAGATGTAGTGGACT...AGTGGAGACTGGAAGAATTCTCCTTTCAGAAGAACCACGAGGCTCTGGCTGAGC 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000006435.8 |
||
| 3UTR CAA 72 bp | AGCTCAAGCCAGGAAGGGACAGGAATGAAAGAAACATaGCTACATGTGCCACAAGATCACCCAGAAAAGGTA | + |
|
Preference number: 4 (lower is better) Translates to: SSSQEGTGMKET*LHVPQDHPEKV Trigger: TACCTTTTCTGGGTGATCTTGTGGCACATGTAGCAATGTTTCTTTCATTCCTGTCCCTTCCTGGCTTGAGCT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000006435.8 |
||
| CDS-3UTR CCA 90 bp | ACATTGCTACATGTGCCACAAGATCACCCAGAAAAGGTAGAGCGGACTCAGAAATCTGGTAATGTCAAGTaGACAATCTCAGCGTATCTG | + |
|
Preference number: 4 (lower is better) Translates to: TLLHVPQDHPEKVERTQKSGNVK*TISAYL Trigger: CAGATACGCTGAGATTGTCCACTTGACATTACCAGA...TTTCTGAGTCCGCTCTACCTTTTCTGGGTGATCTTGTGGCACATGTAGCAATGT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000006435.8 |
||
| CDS-3UTR TCA 90 bp | ATAGATACATCAGTAAGCAAACTTCACCCCTCAGCTTCTTTAAAGAAAGCACTAACGTGCTTCTCACACTaGTATGCCAGAAACTCGGCC | + |
|
Preference number: 4 (lower is better) Translates to: IDTSVSKLHPSASLKKALTCFSH*YARNSA Trigger: GGCCGAGTTTCTGGCATATCAGTGTGAGAAGCACGT...TAGTGCTTTCTTTAAAGAAGCTGAGGGGTGAAGTTTGCTTACTGATGTATCTAT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000006435.8 |
||
| CDS-3UTR GCA 90 bp | AAACTTCACCCCTCAGCTTCTTTAAAGAAAGCACTAAAGGTGAGGTTTCTGAGCAAGATTCGAAGCAACTaGCAGCCAATGTCCAAAGTC | + |
|
Preference number: 4 (lower is better) Translates to: KLHPSASLKKALKVRFLSKIRSN*QPMSKV Trigger: GACTTTGGACATTGGCTGGCAGTTGCTTCGAATCTT...GCTCAGAAACCTCACCTTTAGTGCTTTCTTTAAAGAAGCTGAGGGGTGAAGTTT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000006435.8 |
||
| CDS-3UTR CCA 90 bp | AAACTTCACCCCTCAGCTTCTTTAAAGAAAGCACTAAAGGTGAGGTTTCTGAGCCACAGGATGTTTTCTTaGCGTCTATACCAGATGTCC | + |
|
Preference number: 4 (lower is better) Translates to: KLHPSASLKKALKVRFLSHRMFS*RLYQMS Trigger: GGACATCTGGTATAGACGCCAAGAAAACATCCTGTG...GCTCAGAAACCTCACCTTTAGTGCTTTCTTTAAAGAAGCTGAGGGGTGAAGTTT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000006435.8 |
||
| CDS-3UTR CCA 90 bp | AGAAACGCGTCAAGAGGAGGGTGGGATGTAGGGTTTTTCTTAATTGTACCCAAGGTGAGAATAGGGATTTaGGTAATAGAGCCGTTTCTA | + |
|
Preference number: 4 (lower is better) Translates to: RNASRGGWDVGFFLIVPKVRIGI*VIEPFL Trigger: TAGAAACGGCTCTATTACCCAAATCCCTATTCTCAC...CTTGGGTACAATTAAGAAAAACCCTACATCCCACCCTCCTCTTGACGCGTTTCT 43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000006435.8 |
||
| 3UTR CAA 72 bp | GGTTCTTCTGAAAGGAGAATTCTTCCAGTCTCCACTTaGCCCCTAAATTTGAGACTGAAGCATTTTAGCTTC | + |
|
Preference number: 4 (lower is better) Translates to: GSSERRILPVST*PLNLRLKHFSF Trigger: GAAGCTAAAATGCTTCAGTCTCAAATTTAGGGGCAAAGTGGAGACTGGAAGAATTCTCCTTTCAGAAGAACC 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000006435.8 |
||
| CDS-3UTR GCA 90 bp | ATAGATACATCAGTAAGCAAACTTCACCCCTCAGCTTCTTTAAAGAAAGCACTAGCCCACTTCTCTTTGTaGCATCTGGTAATGTCAAGT | + |
|
Preference number: 4 (lower is better) Translates to: IDTSVSKLHPSASLKKALAHFSL*HLVMSS Trigger: ACTTGACATTACCAGATGGCACAAAGAGAAGTGGGC...TAGTGCTTTCTTTAAAGAAGCTGAGGGGTGAAGTTTGCTTACTGATGTATCTAT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000006435.8 |
||
| 3UTR CAA 72 bp | AGGAGAATTCTTCCAGTCTCCACTTTGCCCCTAAATTaGAGACTGAAGCATTTTAGCTTCAGAACAGTGATA | + |
|
Preference number: 4 (lower is better) Translates to: RRILPVSTLPLN*RLKHFSFRTVI Trigger: TATCACTGTTCTGAAGCTAAAATGCTTCAGTCTCAAATTTAGGGGCAAAGTGGAGACTGGAAGAATTCTCCT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000006435.8 |
||
| CDS-3UTR CAA 90 bp | GGCTGTGCAATGTTACCTGATTCTCTGTGGGCCTCAGAGAAAGTCGCCACGCAGGGTGAGAATAGGGATTaGGGTAATAGAGCCGTTTCT | + |
|
Preference number: 5 (lower is better) Translates to: GCAMLPDSLWASEKVATQGENRD*GNRAVS Trigger: AGAAACGGCTCTATTACCCAAATCCCTATTCTCACC...CTGCGTGGCGACTTTCTCTGAGGCCCACAGAGAATCAGGTAACATTGCACAGCC 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000006435.8 |
||
| CDS-3UTR CAA 90 bp | ACATTGCTACATGTGCCACAAGATCACCCAGAAAAGGTAGAGCGGACTCAGAAACACGGCTTTCATGGCTaGCACGTCCTTACCGATGGC | + |
|
Preference number: 5 (lower is better) Translates to: TLLHVPQDHPEKVERTQKHGFHG*HVLTDG Trigger: GCCATCGGTAAGGACGTGCAAGCCATGAAAGCCGTG...TTTCTGAGTCCGCTCTACCTTTTCTGGGTGATCTTGTGGCACATGTAGCAATGT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000006435.8 |
||
| CDS-3UTR CAA 90 bp | TTTTCCAAGTCTCAATTCTCCTGTGACTGTAGCCCAGTGGGGGTCGTCAGCACACGGCACGTTCATAGATaGTGGCTAAGTCGGTATACA | + |
|
Preference number: 5 (lower is better) Translates to: FSKSQFSCDCSPVGVVSTRHVHR*WLSRYT Trigger: TGTATACCGACTTAGCCACAATCTATGAACGTGCCG...TGTGCTGACGACCCCCACTGGGCTACAGTCACAGGAGAATTGAGACTTGGAAAA 50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000006435.8 |
||
| CDS CCA 72 bp | GCGCCTGCTCCCGAGCTCCGGCCATCGGCCCACCGGTaGGCACGGGCAGTTCGGGTGCGGCCCCGTTCACGA | + |
|
Preference number: 6 (lower is better) Translates to: APAPELRPSAHR*ARAVRVRPRSR Trigger: TCGTGAACGGGGCCGCACCCGAACTGCCCGTGCCCACCGGTGGGCCGATGGCCGGAGCTCGGGAGCAGGCGC 76% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000006435.8 |
||
| CDS GCA 72 bp | GGCCATCGGCCCACCGGTGGGCACGGGCAGTTCGGGTaGGGCCCCGTTCACGATTCCCCGCATCGCTCGCAA | + |
|
Preference number: 6 (lower is better) Translates to: GHRPTGGHGQFG*GPVHDSPHRSQ Trigger: TTGCGAGCGATGCGGGGAATCGTGAACGGGGCCGCACCCGAACTGCCCGTGCCCACCGGTGGGCCGATGGCC 72% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000006435.8 |
||
| CDS CCA 72 bp | AGCCTGGGAAGCCTCGCCGACCAGGGACCTCTTCCCTaGCAGCTGAAACCTCTCGCAGCGCTTCAGCGTAGG | + |
|
Preference number: 6 (lower is better) Translates to: SLGSLADQGPLP*QLKPLAALQRR Trigger: CCTACGCTGAAGCGCTGCGAGAGGTTTCAGCTGCCAGGGAAGAGGTCCCTGGTCGGCGAGGCTTCCCAGGCT 65% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000006435.8 |
||
| CDS TCA 72 bp | GAAGCCTCGCCGACCAGGGACCTCTTCCCTGGCAGCTaGAACCTCTCGCAGCGCTTCAGCGTAGGAGCTCAT | + |
|
Preference number: 6 (lower is better) Translates to: EASPTRDLFPGS*NLSQRFSVGAH Trigger: ATGAGCTCCTACGCTGAAGCGCTGCGAGAGGTTTCAGCTGCCAGGGAAGAGGTCCCTGGTCGGCGAGGCTTC 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000006435.8 |
||
| CDS CCA 72 bp | TTCTACCTTCCACTCGACCGGCACGTTCATAGATTGTaGCTAAGTCGGTATACATGTAGCCTGGGAAGCCTC | + |
|
Preference number: 6 (lower is better) Translates to: FYLPLDRHVHRL*LSRYTCSLGSL Trigger: GAGGCTTCCCAGGCTACATGTATACCGACTTAGCCACAATCTATGAACGTGCCGGTCGAGTGGAAGGTAGAA 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000006435.8 |
||
| CDS TCA 72 bp | CCCTCAGTAATGTACCCAGTCAAGTCAGGGATGGGATaGGTGATATCGTCATTGGGCATGGTGAGAATAGGG | + |
|
Preference number: 6 (lower is better) Translates to: PSVMYPVKSGMG*VISSLGMVRIG Trigger: CCCTATTCTCACCATGCCCAATGACGATATCACTCATCCCATCCCTGACTTGACTGGGTACATTACTGAGGG 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000006435.8 |
||
| CDS TCA 72 bp | TTGGATTTCTTTACCAAACCAGCCTGGCGACAGATCTaGGCTGCAATCTCGTTGTGTGGTAATCCAGCAGCA | + |
|
Preference number: 6 (lower is better) Translates to: LDFFTKPAWRQI*AAISLCGNPAA Trigger: TGCTGCTGGATTACCACACAACGAGATTGCAGCTCAGATCTGTCGCCAGGCTGGTTTGGTAAAGAAATCCAA 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000006435.8 |
||
| CDS CCA 72 bp | CATCTGGTAATGTCAAGTGGACAATCTCAGCGTATCTaGGAAACTTCACATGATCTAGGATCACTAGTGGAC | + |
|
Preference number: 6 (lower is better) Translates to: HLVMSSGQSQRI*ETSHDLGSLVD Trigger: GTCCACTAGTGATCCTAGATCATGTGAAGTTTCCCAGATACGCTGAGATTGTCCACTTGACATTACCAGATG 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000006435.8 |
||
| CDS CCA 72 bp | TGGCAAAATTTTCTTCACTATAGTCCACTACATCTTTaGATTTCTTTACCAAACCAGCCTGGCGACAGATCT | + |
|
Preference number: 6 (lower is better) Translates to: WQNFLHYSPLHL*ISLPNQPGDRS Trigger: AGATCTGTCGCCAGGCTGGTTTGGTAAAGAAATCCAAAGATGTAGTGGACTATAGTGAAGAAAATTTTGCCA 40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000006435.8 |
||