Pregenerated sensors for ATP6V0E2 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000039347Ensembl transcript IDs: ENSMUST00000040361.8, ENSMUST00000203011.2
Found 73 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR GCA 90 bp | GGGCGAGCACAGGATGGTCATACAGATGGGTGGGGCCAGAGGGAATaGAGGGTCTCCAGGGACATCAAGGCTGGGCCATTCACCCTTCAC | + |
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Preference number: 1 (lower is better) Translates to: GRAQDGHTDGWGQRE*RVSRDIKAGPFTLH Trigger: GTGAAGGGTGAATGGCCCAGCCTTGATGTCCCTGGAGACCCTGCATTCCCTCTGGCCCCACCCATCTGTATGACCATCCTGTGCTCGCCC 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000040361.8 |
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| 3UTR GCA 90 bp | AGGAGTCAGGGTAGGACGGGATGGGTTGCCCACAGAGGCCCCAGCTaGAGATCTGAGCCACTAGCACACTTAATGCCCAGCAATCTGAGC | + |
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Preference number: 1 (lower is better) Translates to: RSQGRTGWVAHRGPS*RSEPLAHLMPSNLS Trigger: GCTCAGATTGCTGGGCATTAAGTGTGCTAGTGGCTCAGATCTGCAGCTGGGGCCTCTGTGGGCAACCCATCCCGTCCTACCCTGACTCCT 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000040361.8 ENSMUST00000203011.2 |
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| 3UTR CCA 90 bp | ATTCCACAGCATGATGGCAGGGCGAGCACAGGATGGTCATACAGATaGGTGGGGCCAGAGGGAATGCAGGGTCTCCAGGGACATCAAGGC | + |
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Preference number: 1 (lower is better) Translates to: IPQHDGRASTGWSYR*VGPEGMQGLQGHQG Trigger: GCCTTGATGTCCCTGGAGACCCTGCATTCCCTCTGGCCCCACCCATCTGTATGACCATCCTGTGCTCGCCCTGCCATCATGCTGTGGAAT 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000040361.8 |
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| 3UTR GCA 90 bp | TATATAGGCCTCTGTCCTAGCAAGCCCTGGCAACACAGGCAAGAATaGCCTACTCACCCTCTCAGAGAGGTGAGGGCATGGGCTGGAGGA | + |
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Preference number: 1 (lower is better) Translates to: YIGLCPSKPWQHRQE*PTHPLREVRAWAGG Trigger: TCCTCCAGCCCATGCCCTCACCTCTCTGAGAGGGTGAGTAGGGCATTCTTGCCTGTGTTGCCAGGGCTTGCTAGGACAGAGGCCTATATA 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000040361.8 ENSMUST00000203011.2 |
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| 3UTR CCA 90 bp | ACTCACCCTCTCAGAGAGGTGAGGGCATGGGCTGGAGGAATGCCCTaGGCTGATCCTCTGTCATTTACATTTTCTGTCTCACTGTGCTTG | + |
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Preference number: 1 (lower is better) Translates to: THPLREVRAWAGGMP*ADPLSFTFSVSLCL Trigger: CAAGCACAGTGAGACAGAAAATGTAAATGACAGAGGATCAGCCCAGGGCATTCCTCCAGCCCATGCCCTCACCTCTCTGAGAGGGTGAGT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000040361.8 ENSMUST00000203011.2 |
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| 3UTR CCA 90 bp | CGTCACCTTTGTCTATCCCCCAACCTCAACTCCAAATCTCTTCAATaGTACTGGGATCTGCCCCACCACAACCCAATGAAGAGTGGCAAA | + |
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Preference number: 1 (lower is better) Translates to: RHLCLSPNLNSKSLQ*YWDLPHHNPMKSGK Trigger: TTTGCCACTCTTCATTGGGTTGTGGTGGGGCAGATCCCAGTACCATTGAAGAGATTTGGAGTTGAGGTTGGGGGATAGACAAAGGTGACG 50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000040361.8 ENSMUST00000203011.2 |
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| 3UTR CCA 90 bp | TCAGCACCTCCAGGAATGTCACATCTACAAGTGTCAGAGACTAAATaGATATCATTCACTTCAGAGCTGGAGGAGGCCTGTGACCCTGAC | + |
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Preference number: 1 (lower is better) Translates to: SAPPGMSHLQVSETK*ISFTSELEEACDPD Trigger: GTCAGGGTCACAGGCCTCCTCCAGCTCTGAAGTGAATGATATCCATTTAGTCTCTGACACTTGTAGATGTGACATTCCTGGAGGTGCTGA 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000040361.8 ENSMUST00000203011.2 |
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| 3UTR GCA 90 bp | TGGATGAAAATAGATAACAGCAGGTCCAGCTCCTTGACCGGGATCTaGTTGGAAGAAAGAGGGAAGTGCCAAGTGTGGGAATTTAAGCTC | + |
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Preference number: 1 (lower is better) Translates to: WMKIDNSRSSSLTGI*LEERGKCQVWEFKL Trigger: GAGCTTAAATTCCCACACTTGGCACTTCCCTCTTTCTTCCAAGCAGATCCCGGTCAAGGAGCTGGACCTGCTGTTATCTATTTTCATCCA 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000040361.8 ENSMUST00000203011.2 |
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| 3UTR-3UTR TCA 90 bp | GGTAGGACGGGATGGGTTGCCCACAGAGGCCCCAGCTGCAGATCTGAGCCACTAGCTCCCACTGTGGCCTaGCTGAGCACGGGGCTTGCC | + |
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Preference number: 2 (lower is better) Translates to: GRTGWVAHRGPSCRSEPLAPTVA*LSTGLA Trigger: GGCAAGCCCCGTGCTCAGTCAGGCCACAGTGGGAGC...TAGTGGCTCAGATCTGCAGCTGGGGCCTCTGTGGGCAACCCATCCCGTCCTACC 66% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000040361.8 ENSMUST00000203011.2 |
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| 3UTR-3UTR TCA 90 bp | CCACCCCCACAGGAAGGCTTCAGGAGTCAGGGTAGGACGGGATGGGTTGCCCACACCCTCTCAGAGAGGTaGGGGCATGGGCTGGAGGAA | + |
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Preference number: 2 (lower is better) Translates to: PPPQEGFRSQGRTGWVAHTLSER*GHGLEE Trigger: TTCCTCCAGCCCATGCCCTCACCTCTCTGAGAGGGT...GTGGGCAACCCATCCCGTCCTACCCTGACTCCTGAAGCCTTCCTGTGGGGGTGG 63% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000040361.8 ENSMUST00000203011.2 |
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| 3UTR-3UTR GCA 90 bp | GGTAGGACGGGATGGGTTGCCCACAGAGGCCCCAGCTGCAGATCTGAGCCACTACATGGGCTGGAGGAATaGCCTGGGCTGATCCTCTGT | + |
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Preference number: 2 (lower is better) Translates to: GRTGWVAHRGPSCRSEPLHGLEE*PGLILC Trigger: ACAGAGGATCAGCCCAGGGCATTCCTCCAGCCCATG...TAGTGGCTCAGATCTGCAGCTGGGGCCTCTGTGGGCAACCCATCCCGTCCTACC 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000040361.8 ENSMUST00000203011.2 |
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| 3UTR-3UTR CCA 90 bp | AGAATGCCCTACTCACCCTCTCAGAGAGGTGAGGGCATGGGCTGGAGGAATGCCCATTCACTTCAGAGCTaGAGGAGGCCTGTGACCCTG | + |
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Preference number: 2 (lower is better) Translates to: RMPYSPSQRGEGMGWRNAHSLQS*RRPVTL Trigger: CAGGGTCACAGGCCTCCTCCAGCTCTGAAGTGAATG...GGCATTCCTCCAGCCCATGCCCTCACCTCTCTGAGAGGGTGAGTAGGGCATTCT 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000040361.8 ENSMUST00000203011.2 |
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| 3UTR-3UTR CCA 90 bp | ACAGGAGTCATGCTCACCATGCCCCACCCCCACAGGAAGGCTTCAGGAGTCAGGGCTGGAGGAATGCCCTaGGCTGATCCTCTGTCATTT | + |
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Preference number: 2 (lower is better) Translates to: TGVMLTMPHPHRKASGVRAGGMP*ADPLSF Trigger: AAATGACAGAGGATCAGCCCAGGGCATTCCTCCAGC...CCTGACTCCTGAAGCCTTCCTGTGGGGGTGGGGCATGGTGAGCATGACTCCTGT 58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000040361.8 ENSMUST00000203011.2 |
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| 3UTR-3UTR TCA 90 bp | GGCTTTCAACAGGAGTCATGCTCACCATGCCCCACCCCCACAGGAAGGCTTCAGACTGAGACCAGAAACTaGAACCAGGTTGGCTCTGGG | + |
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Preference number: 2 (lower is better) Translates to: GFQQESCSPCPTPTGRLQTETRN*NQVGSG Trigger: CCCAGAGCCAACCTGGTTTCAGTTTCTGGTCTCAGT...CTGAAGCCTTCCTGTGGGGGTGGGGCATGGTGAGCATGACTCCTGTTGAAAGCC 57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000040361.8 |
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| 3UTR-3UTR TCA 90 bp | TTAGACAGGAATCGGCTTTCAACAGGAGTCATGCTCACCATGCCCCACCCCCACTTTCTGGTACTGGGCTaGGTCCTGCCTTCTGCTCCC | + |
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Preference number: 2 (lower is better) Translates to: LDRNRLSTGVMLTMPHPHFLVLG*VLPSAP Trigger: GGGAGCAGAAGGCAGGACTCAGCCCAGTACCAGAAA...GTGGGGGTGGGGCATGGTGAGCATGACTCCTGTTGAAAGCCGATTCCTGTCTAA 57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000040361.8 ENSMUST00000203011.2 |
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| 3UTR-3UTR GCA 90 bp | CACAGGAAGGCTTCAGGAGTCAGGGTAGGACGGGATGGGTTGCCCACAGAGGCCCTGAGTCCTGCCTTCTaGTCCCTGGATGAAAATAGA | + |
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Preference number: 2 (lower is better) Translates to: HRKASGVRVGRDGLPTEALSPAF*SLDENR Trigger: TCTATTTTCATCCAGGGAGCAGAAGGCAGGACTCAG...GGCCTCTGTGGGCAACCCATCCCGTCCTACCCTGACTCCTGAAGCCTTCCTGTG 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000040361.8 ENSMUST00000203011.2 |
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| 3UTR-3UTR TCA 90 bp | CACTTAATGCCCAGCAATCTGAGCTATAGTGTATTCTGCTGCCACTCCCAAAACGCTCCCACTGTGGCCTaGCTGAGCACGGGGCTTGCC | + |
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Preference number: 2 (lower is better) Translates to: HLMPSNLSYSVFCCHSQNAPTVA*LSTGLA Trigger: GGCAAGCCCCGTGCTCAGTCAGGCCACAGTGGGAGC...GTTTTGGGAGTGGCAGCAGAATACACTATAGCTCAGATTGCTGGGCATTAAGTG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000040361.8 ENSMUST00000203011.2 |
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| 3UTR-3UTR GCA 90 bp | ACAGGAGTCATGCTCACCATGCCCCACCCCCACAGGAAGGCTTCAGGAGTCAGGTATAGTGTATTCTGCTaGCACTCCCAAAACGACCCC | + |
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Preference number: 2 (lower is better) Translates to: TGVMLTMPHPHRKASGVRYSVFC*HSQNDP Trigger: GGGGTCGTTTTGGGAGTGGCAGCAGAATACACTATA...CCTGACTCCTGAAGCCTTCCTGTGGGGGTGGGGCATGGTGAGCATGACTCCTGT 56% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 2 transcripts: ENSMUST00000040361.8 ENSMUST00000203011.2 |
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| 3UTR-3UTR TCA 90 bp | GGCTTTCAACAGGAGTCATGCTCACCATGCCCCACCCCCACAGGAAGGCTTCAGAGGAATGCCCTGGGCTaGTCCTCTGTCATTTACATT | + |
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Preference number: 2 (lower is better) Translates to: GFQQESCSPCPTPTGRLQRNALG*SSVIYI Trigger: AATGTAAATGACAGAGGATCAGCCCAGGGCATTCCT...CTGAAGCCTTCCTGTGGGGGTGGGGCATGGTGAGCATGACTCCTGTTGAAAGCC 54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000040361.8 ENSMUST00000203011.2 |
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| 3UTR-3UTR GCA 90 bp | CTCAACTCCAAATCTCTTCAATGGTACTGGGATCTGCCCCACCACAACCCAATGTGGGGCCAGAGGGAATaGAGGGTCTCCAGGGACATC | + |
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Preference number: 2 (lower is better) Translates to: LNSKSLQWYWDLPHHNPMWGQRE*RVSRDI Trigger: GATGTCCCTGGAGACCCTGCATTCCCTCTGGCCCCA...CATTGGGTTGTGGTGGGGCAGATCCCAGTACCATTGAAGAGATTTGGAGTTGAG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000040361.8 |
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| 3UTR-3UTR TCA 90 bp | ATGAGCTTAGGGACAGAGGGTCTCAAAAGCCAGGGAGGCATAGTGCTAGTAGTATCACAGCAGGGCATCTaGGGCCAGAAGCCAGCTGAT | + |
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Preference number: 2 (lower is better) Translates to: MSLGTEGLKSQGGIVLVVSQQGI*GQKPAD Trigger: ATCAGCTGGCTTCTGGCCTCAGATGCCCTGCTGTGA...TACTACTAGCACTATGCCTCCCTGGCTTTTGAGACCCTCTGTCCCTAAGCTCAT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000040361.8 |
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| 3UTR-3UTR TCA 90 bp | ATGAGCTTAGGGACAGAGGGTCTCAAAAGCCAGGGAGGCATAGTGCTAGTAGTATTTCTGGTACTGGGCTaGGTCCTGCCTTCTGCTCCC | + |
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Preference number: 2 (lower is better) Translates to: MSLGTEGLKSQGGIVLVVFLVLG*VLPSAP Trigger: GGGAGCAGAAGGCAGGACTCAGCCCAGTACCAGAAA...TACTACTAGCACTATGCCTCCCTGGCTTTTGAGACCCTCTGTCCCTAAGCTCAT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000040361.8 ENSMUST00000203011.2 |
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| 3UTR-3UTR GCA 90 bp | AGAATGCCCTACTCACCCTCTCAGAGAGGTGAGGGCATGGGCTGGAGGAATGCCGAAGAAAGAGGGAAGTaGCAAGTGTGGGAATTTAAG | + |
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Preference number: 2 (lower is better) Translates to: RMPYSPSQRGEGMGWRNAEERGK*QVWEFK Trigger: CTTAAATTCCCACACTTGGCACTTCCCTCTTTCTTC...GGCATTCCTCCAGCCCATGCCCTCACCTCTCTGAGAGGGTGAGTAGGGCATTCT 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000040361.8 ENSMUST00000203011.2 |
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| 3UTR-3UTR GCA 90 bp | ATAGGCCTCTGTCCTAGCAAGCCCTGGCAACACAGGCAAGAATGCCCTACTCACCTGAGTCCTGCCTTCTaGTCCCTGGATGAAAATAGA | + |
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Preference number: 2 (lower is better) Translates to: IGLCPSKPWQHRQECPTHLSPAF*SLDENR Trigger: TCTATTTTCATCCAGGGAGCAGAAGGCAGGACTCAG...GTGAGTAGGGCATTCTTGCCTGTGTTGCCAGGGCTTGCTAGGACAGAGGCCTAT 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000040361.8 ENSMUST00000203011.2 |
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| 3UTR-3UTR GCA 90 bp | TGGGCTTTCTTCCCCTGGGAACTCAAACAGCCACTGGTTAGGAGCCATGGATTAACTACCTCCCTCCCATaGCAAGTGATTTCCCTGCTG | + |
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Preference number: 2 (lower is better) Translates to: WAFFPWELKQPLVRSHGLTTSLP*QVISLL Trigger: CAGCAGGGAAATCACTTGGCATGGGAGGGAGGTAGT...TAATCCATGGCTCCTAACCAGTGGCTGTTTGAGTTCCCAGGGGAAGAAAGCCCA 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000040361.8 ENSMUST00000203011.2 |
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| 3UTR-3UTR GCA 90 bp | GCAACACAGGCAAGAATGCCCTACTCACCCTCTCAGAGAGGTGAGGGCATGGGCTTTTCTGTCTCACTGTaGTTGGCACAGAACCATATG | + |
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Preference number: 2 (lower is better) Translates to: ATQARMPYSPSQRGEGMGFSVSL*LAQNHM Trigger: CATATGGTTCTGTGCCAAGCACAGTGAGACAGAAAA...GCCCATGCCCTCACCTCTCTGAGAGGGTGAGTAGGGCATTCTTGCCTGTGTTGC 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000040361.8 ENSMUST00000203011.2 |
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| 3UTR-3UTR GCA 90 bp | TCAACAGGAGTCATGCTCACCATGCCCCACCCCCACAGGAAGGCTTCAGGAGTCTTTTCTGTCTCACTGTaGTTGGCACAGAACCATATG | + |
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Preference number: 2 (lower is better) Translates to: STGVMLTMPHPHRKASGVFSVSL*LAQNHM Trigger: CATATGGTTCTGTGCCAAGCACAGTGAGACAGAAAA...GACTCCTGAAGCCTTCCTGTGGGGGTGGGGCATGGTGAGCATGACTCCTGTTGA 52% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 2 transcripts: ENSMUST00000040361.8 ENSMUST00000203011.2 |
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| 3UTR-3UTR TCA 90 bp | CACTTAATGCCCAGCAATCTGAGCTATAGTGTATTCTGCTGCCACTCCCAAAACATGGATTCCACAGCATaGTGGCAGGGCGAGCACAGG | + |
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Preference number: 2 (lower is better) Translates to: HLMPSNLSYSVFCCHSQNMDSTA*WQGEHR Trigger: CCTGTGCTCGCCCTGCCATCATGCTGTGGAATCCAT...GTTTTGGGAGTGGCAGCAGAATACACTATAGCTCAGATTGCTGGGCATTAAGTG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000040361.8 |
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| 3UTR-3UTR CCA 90 bp | GAGGGTCTCAAAAGCCAGGGAGGCATAGTGCTAGTAGTACCCCAGAAACGTCACTCCAAATCTCTTCAATaGTACTGGGATCTGCCCCAC | + |
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Preference number: 2 (lower is better) Translates to: EGLKSQGGIVLVVPQKRHSKSLQ*YWDLPH Trigger: GTGGGGCAGATCCCAGTACCATTGAAGAGATTTGGA...GTGACGTTTCTGGGGTACTACTAGCACTATGCCTCCCTGGCTTTTGAGACCCTC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 2 transcripts: ENSMUST00000040361.8 ENSMUST00000203011.2 |
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| 3UTR CAA 90 bp | CCCTGGGCTGATCCTCTGTCATTTACATTTTCTGTCTCACTGTGCTaGGCACAGAACCATATGAGCTTAGGGACAGAGGGTCTCAAAAGC | + |
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Preference number: 2 (lower is better) Translates to: PWADPLSFTFSVSLC*AQNHMSLGTEGLKS Trigger: GCTTTTGAGACCCTCTGTCCCTAAGCTCATATGGTTCTGTGCCAAGCACAGTGAGACAGAAAATGTAAATGACAGAGGATCAGCCCAGGG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000040361.8 ENSMUST00000203011.2 |
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| 3UTR-3UTR GCA 90 bp | CAAATCTCTTCAATGGTACTGGGATCTGCCCCACCACAACCCAATGAAGAGTGGGGTTTTTGGTGTGACTaGTTCTTTAAGACATCAGCA | + |
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Preference number: 2 (lower is better) Translates to: QISSMVLGSAPPQPNEEWGFWCD*FFKTSA Trigger: TGCTGATGTCTTAAAGAAGCAGTCACACCAAAAACC...CCACTCTTCATTGGGTTGTGGTGGGGCAGATCCCAGTACCATTGAAGAGATTTG 46% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 2 transcripts: ENSMUST00000040361.8 ENSMUST00000203011.2 |
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| 3UTR-3UTR CCA 90 bp | CAAGTGATTTCCCTGCTGCTAAAGGCTAAACATGGAGGCTTTGATCCTGACTGTCTGCCTTCTGCTCCCTaGATGAAAATAGATAACAGC | + |
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Preference number: 2 (lower is better) Translates to: QVISLLLKAKHGGFDPDCLPSAP*MKIDNS Trigger: GCTGTTATCTATTTTCATCCAGGGAGCAGAAGGCAG...ACAGTCAGGATCAAAGCCTCCATGTTTAGCCTTTAGCAGCAGGGAAATCACTTG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000040361.8 ENSMUST00000203011.2 |
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| 3UTR-3UTR CCA 90 bp | CCCTGGGAACTCAAACAGCCACTGGTTAGGAGCCATGGATTATATAGGCCTCTGGTGTCAGAGACTAAATaGATATCATTCACTTCAGAG | + |
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Preference number: 2 (lower is better) Translates to: PWELKQPLVRSHGLYRPLVSETK*ISFTSE Trigger: CTCTGAAGTGAATGATATCCATTTAGTCTCTGACAC...CAGAGGCCTATATAATCCATGGCTCCTAACCAGTGGCTGTTTGAGTTCCCAGGG 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000040361.8 ENSMUST00000203011.2 |
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| 3UTR CAA 90 bp | CAATATTTCAACACGGTGGAGACAGAGTTAAAAAGCCTAGAGATTTaGGGCCACATGTCCCTTCTCCACAAAGACTCAAGTCCTTTCTGG | + |
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Preference number: 2 (lower is better) Translates to: QYFNTVETELKSLEI*GHMSLLHKDSSPFW Trigger: CCAGAAAGGACTTGAGTCTTTGTGGAGAAGGGACATGTGGCCCAAAATCTCTAGGCTTTTTAACTCTGTCTCCACCGTGTTGAAATATTG 44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000040361.8 ENSMUST00000203011.2 |
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| 3UTR CCA 72 bp | CCACAGGAAGGCTTCAGGAGTCAGGGTAGGACGGGATaGGTTGCCCACAGAGGCCCCAGCTGCAGATCTGAG | + |
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Preference number: 3 (lower is better) Translates to: PQEGFRSQGRTG*VAHRGPSCRSE Trigger: CTCAGATCTGCAGCTGGGGCCTCTGTGGGCAACCCATCCCGTCCTACCCTGACTCCTGAAGCCTTCCTGTGG 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000040361.8 ENSMUST00000203011.2 |
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| 3UTR GCA 72 bp | GTAAGCTCCCACTGTGGCCTGACTGAGCACGGGGCTTaGCCAACATGGAGGGCCGCTAATAGCTGGGAACAC | + |
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Preference number: 3 (lower is better) Translates to: VSSHCGLTEHGA*PTWRAANSWEH Trigger: GTGTTCCCAGCTATTAGCGGCCCTCCATGTTGGGCAAGCCCCGTGCTCAGTCAGGCCACAGTGGGAGCTTAC 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000040361.8 |
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| 3UTR GCA 72 bp | GGTAGGACGGGATGGGTTGCCCACAGAGGCCCCAGCTaGAGATCTGAGCCACTAGCACACTTAATGCCCAGC | + |
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Preference number: 3 (lower is better) Translates to: GRTGWVAHRGPS*RSEPLAHLMPS Trigger: GCTGGGCATTAAGTGTGCTAGTGGCTCAGATCTGCAGCTGGGGCCTCTGTGGGCAACCCATCCCGTCCTACC 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000040361.8 ENSMUST00000203011.2 |
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| 3UTR CCA 72 bp | CACTGTGGCCTGACTGAGCACGGGGCTTGCCCAACATaGAGGGCCGCTAATAGCTGGGAACACAGGGGAAAC | + |
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Preference number: 3 (lower is better) Translates to: HCGLTEHGACPT*RAANSWEHRGN Trigger: GTTTCCCCTGTGTTCCCAGCTATTAGCGGCCCTCCATGTTGGGCAAGCCCCGTGCTCAGTCAGGCCACAGTG 61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000040361.8 |
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| 3UTR GCA 72 bp | CAGGATGGTCATACAGATGGGTGGGGCCAGAGGGAATaGAGGGTCTCCAGGGACATCAAGGCTGGGCCATTC | + |
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Preference number: 3 (lower is better) Translates to: QDGHTDGWGQRE*RVSRDIKAGPF Trigger: GAATGGCCCAGCCTTGATGTCCCTGGAGACCCTGCATTCCCTCTGGCCCCACCCATCTGTATGACCATCCTG 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000040361.8 |
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| 3UTR-3UTR CAA 90 bp | AGGACGGGATGGGTTGCCCACAGAGGCCCCAGCTGCAGATCTGAGCCACTAGCACTAAACATGGAGGCTTaGATCCTGACTGTGCCGGGT | + |
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Preference number: 3 (lower is better) Translates to: RTGWVAHRGPSCRSEPLALNMEA*ILTVPG Trigger: ACCCGGCACAGTCAGGATCAAAGCCTCCATGTTTAG...TGCTAGTGGCTCAGATCTGCAGCTGGGGCCTCTGTGGGCAACCCATCCCGTCCT 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000040361.8 ENSMUST00000203011.2 |
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| 3UTR-3UTR CAA 90 bp | AGGACGGGATGGGTTGCCCACAGAGGCCCCAGCTGCAGATCTGAGCCACTAGCAGAAACTGAAACCAGGTaGGCTCTGGGGGTTATGGAT | + |
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Preference number: 3 (lower is better) Translates to: RTGWVAHRGPSCRSEPLAETETR*ALGVMD Trigger: ATCCATAACCCCCAGAGCCAACCTGGTTTCAGTTTC...TGCTAGTGGCTCAGATCTGCAGCTGGGGCCTCTGTGGGCAACCCATCCCGTCCT 58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000040361.8 |
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| 3UTR GCA 72 bp | CTCTGTCCTAGCAAGCCCTGGCAACACAGGCAAGAATaGCCTACTCACCCTCTCAGAGAGGTGAGGGCATGG | + |
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Preference number: 3 (lower is better) Translates to: LCPSKPWQHRQE*PTHPLREVRAW Trigger: CCATGCCCTCACCTCTCTGAGAGGGTGAGTAGGGCATTCTTGCCTGTGTTGCCAGGGCTTGCTAGGACAGAG 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000040361.8 ENSMUST00000203011.2 |
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| 3UTR CCA 72 bp | TGGATTCCACAGCATGATGGCAGGGCGAGCACAGGATaGTCATACAGATGGGTGGGGCCAGAGGGAATGCAG | + |
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Preference number: 3 (lower is better) Translates to: WIPQHDGRASTG*SYRWVGPEGMQ Trigger: CTGCATTCCCTCTGGCCCCACCCATCTGTATGACCATCCTGTGCTCGCCCTGCCATCATGCTGTGGAATCCA 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000040361.8 |
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| 3UTR-3UTR CAA 90 bp | TCAACAGGAGTCATGCTCACCATGCCCCACCCCCACAGGAAGGCTTCAGGAGTCCTAAACATGGAGGCTTaGATCCTGACTGTGCCGGGT | + |
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Preference number: 3 (lower is better) Translates to: STGVMLTMPHPHRKASGVLNMEA*ILTVPG Trigger: ACCCGGCACAGTCAGGATCAAAGCCTCCATGTTTAG...GACTCCTGAAGCCTTCCTGTGGGGGTGGGGCATGGTGAGCATGACTCCTGTTGA 57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000040361.8 ENSMUST00000203011.2 |
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| 3UTR TCA 72 bp | ACCAGGTTGGCTCTGGGGGTTATGGATTCCACAGCATaGTGGCAGGGCGAGCACAGGATGGTCATACAGATG | + |
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Preference number: 3 (lower is better) Translates to: TRLALGVMDSTA*WQGEHRMVIQM Trigger: CATCTGTATGACCATCCTGTGCTCGCCCTGCCATCATGCTGTGGAATCCATAACCCCCAGAGCCAACCTGGT 56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000040361.8 |
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| 3UTR CCA 72 bp | GACCAGAAACTGAAACCAGGTTGGCTCTGGGGGTTATaGATTCCACAGCATGATGGCAGGGCGAGCACAGGA | + |
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Preference number: 3 (lower is better) Translates to: DQKLKPGWLWGL*IPQHDGRASTG Trigger: TCCTGTGCTCGCCCTGCCATCATGCTGTGGAATCCATAACCCCCAGAGCCAACCTGGTTTCAGTTTCTGGTC 56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000040361.8 |
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| 3UTR CCA 72 bp | GCCATGGATTATATAGGCCTCTGTCCTAGCAAGCCCTaGCAACACAGGCAAGAATGCCCTACTCACCCTCTC | + |
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Preference number: 3 (lower is better) Translates to: AMDYIGLCPSKP*QHRQECPTHPL Trigger: GAGAGGGTGAGTAGGGCATTCTTGCCTGTGTTGCCAGGGCTTGCTAGGACAGAGGCCTATATAATCCATGGC 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000040361.8 ENSMUST00000203011.2 |
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| 3UTR CCA 72 bp | CTCAGAGAGGTGAGGGCATGGGCTGGAGGAATGCCCTaGGCTGATCCTCTGTCATTTACATTTTCTGTCTCA | + |
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Preference number: 3 (lower is better) Translates to: LREVRAWAGGMP*ADPLSFTFSVS Trigger: TGAGACAGAAAATGTAAATGACAGAGGATCAGCCCAGGGCATTCCTCCAGCCCATGCCCTCACCTCTCTGAG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000040361.8 ENSMUST00000203011.2 |
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| 3UTR-3UTR CAA 90 bp | ATTTCCCTGCTGCTAAAGGCTAAACATGGAGGCTTTGATCCTGACTGTGCCGGGTTGACCGGGATCTGCTaGGAAGAAAGAGGGAAGTGC | + |
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Preference number: 3 (lower is better) Translates to: ISLLLKAKHGGFDPDCAGLTGIC*EERGKC Trigger: GCACTTCCCTCTTTCTTCCAAGCAGATCCCGGTCAA...CCCGGCACAGTCAGGATCAAAGCCTCCATGTTTAGCCTTTAGCAGCAGGGAAAT 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000040361.8 ENSMUST00000203011.2 |
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| 3UTR TCA 72 bp | ATAGCTGGGAACACAGGGGAAACTGAGACCAGAAACTaGAACCAGGTTGGCTCTGGGGGTTATGGATTCCAC | + |
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Preference number: 3 (lower is better) Translates to: IAGNTGETETRN*NQVGSGGYGFH Trigger: GTGGAATCCATAACCCCCAGAGCCAACCTGGTTTCAGTTTCTGGTCTCAGTTTCCCCTGTGTTCCCAGCTAT 51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000040361.8 |
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| 3UTR GCA 72 bp | ATAGATAACAGCAGGTCCAGCTCCTTGACCGGGATCTaGTTGGAAGAAAGAGGGAAGTGCCAAGTGTGGGAA | + |
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Preference number: 3 (lower is better) Translates to: IDNSRSSSLTGI*LEERGKCQVWE Trigger: TTCCCACACTTGGCACTTCCCTCTTTCTTCCAAGCAGATCCCGGTCAAGGAGCTGGACCTGCTGTTATCTAT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000040361.8 ENSMUST00000203011.2 |
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| 3UTR TCA 72 bp | GGAGTGGGCGATCTTATCTACAGAGGGAGAGGAAAGTaGCTAGAACATTCCAAAGACACACTACCTCCCTCC | + |
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Preference number: 3 (lower is better) Translates to: GVGDLIYRGRGK*LEHSKDTLPPS Trigger: GGAGGGAGGTAGTGTGTCTTTGGAATGTTCTAGTCACTTTCCTCTCCCTCTGTAGATAAGATCGCCCACTCC 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000040361.8 ENSMUST00000203011.2 |
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| 3UTR CCA 72 bp | AAAAGGGTTGTACCCCAACTGACAGGTACTAGGGAGTaGGCGATCTTATCTACAGAGGGAGAGGAAAGTGAC | + |
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Preference number: 3 (lower is better) Translates to: KRVVPQLTGTRE*AILSTEGEESD Trigger: GTCACTTTCCTCTCCCTCTGTAGATAAGATCGCCCACTCCCTAGTACCTGTCAGTTGGGGTACAACCCTTTT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000040361.8 ENSMUST00000203011.2 |
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| 3UTR CCA 72 bp | TGTCTATCCCCCAACCTCAACTCCAAATCTCTTCAATaGTACTGGGATCTGCCCCACCACAACCCAATGAAG | + |
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Preference number: 3 (lower is better) Translates to: CLSPNLNSKSLQ*YWDLPHHNPMK Trigger: CTTCATTGGGTTGTGGTGGGGCAGATCCCAGTACCATTGAAGAGATTTGGAGTTGAGGTTGGGGGATAGACA 50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000040361.8 ENSMUST00000203011.2 |
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| 3UTR TCA 72 bp | TCTCCACAAAGACTCAAGTCCTTTCTGGTACTGGGCTaGGTCCTGCCTTCTGCTCCCTGGATGAAAATAGAT | + |
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Preference number: 3 (lower is better) Translates to: SPQRLKSFLVLG*VLPSAPWMKID Trigger: ATCTATTTTCATCCAGGGAGCAGAAGGCAGGACTCAGCCCAGTACCAGAAAGGACTTGAGTCTTTGTGGAGA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000040361.8 ENSMUST00000203011.2 |
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| 3UTR GCA 72 bp | GCTTTGATCCTGACTGTGCCGGGTTTTTGGTGTGACTaGTTCTTTAAGACATCAGCACCTCCAGGAATGTCA | + |
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Preference number: 3 (lower is better) Translates to: ALILTVPGFWCD*FFKTSAPPGMS Trigger: TGACATTCCTGGAGGTGCTGATGTCTTAAAGAAGCAGTCACACCAAAAACCCGGCACAGTCAGGATCAAAGC 49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000040361.8 ENSMUST00000203011.2 |
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| CDS-3UTR CCA 90 bp | AGAATGCCCTACTCACCCTCTCAGAGAGGTGAGGGCATGGGCTGGAGGAATGCCAACAGGGGGTTCAGTTaGGCCAAGATGGCGATGAGC | + |
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Preference number: 4 (lower is better) Translates to: RMPYSPSQRGEGMGWRNANRGFS*AKMAMS Trigger: GCTCATCGCCATCTTGGCCCAACTGAACCCCCTGTT...GGCATTCCTCCAGCCCATGCCCTCACCTCTCTGAGAGGGTGAGTAGGGCATTCT 58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000040361.8 |
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| CDS-3UTR CCA 90 bp | AATCGGCTTTCAACAGGAGTCATGCTCACCATGCCCCACCCCCACAGGAAGGCTCTCATTCTTCAGTTGTaGCCCAAACAGGGGGTTCAG | + |
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Preference number: 4 (lower is better) Translates to: NRLSTGVMLTMPHPHRKALILQL*PKQGVQ Trigger: CTGAACCCCCTGTTTGGGCCACAACTGAAGAATGAG...AGCCTTCCTGTGGGGGTGGGGCATGGTGAGCATGACTCCTGTTGAAAGCCGATT 54% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt. Matches the following 1 transcripts: ENSMUST00000040361.8 |
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| CDS-3UTR TCA 90 bp | TGTCAGAGACTAAATGGATATCATTCACTTCAGAGCTGGAGGAGGCCTGTGACCATGGATTCCACAGCATaGTGGCAGGGCGAGCACAGG | + |
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Preference number: 4 (lower is better) Translates to: CQRLNGYHSLQSWRRPVTMDSTA*WQGEHR Trigger: CCTGTGCTCGCCCTGCCATCATGCTGTGGAATCCAT...GGTCACAGGCCTCCTCCAGCTCTGAAGTGAATGATATCCATTTAGTCTCTGACA 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000203011.2 |
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| CDS-3UTR TCA 90 bp | CTGACAGGTACTAGGGAGTGGGCGATCTTATCTACAGAGGGAGAGGAAAGTGACACTGAGACCAGAAACTaGAACCAGGTTGGCTCTGGG | + |
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Preference number: 4 (lower is better) Translates to: LTGTREWAILSTEGEESDTETRN*NQVGSG Trigger: CCCAGAGCCAACCTGGTTTCAGTTTCTGGTCTCAGT...GTCACTTTCCTCTCCCTCTGTAGATAAGATCGCCCACTCCCTAGTACCTGTCAG 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000203011.2 |
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| CDS-3UTR CCA 90 bp | GACCCAATATTTCAACACGGTGGAGACAGAGTTAAAAAGCCTAGAGATTTTGGGCGCGGTTGGGTCCTTTaGGCACGAACCAGGGCCCAG | + |
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Preference number: 4 (lower is better) Translates to: DPIFQHGGDRVKKPRDFGRGWVL*ARTRAQ Trigger: CTGGGCCCTGGTTCGTGCCCAAAGGACCCAACCGCG...CCCAAAATCTCTAGGCTTTTTAACTCTGTCTCCACCGTGTTGAAATATTGGGTC 52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000040361.8 ENSMUST00000203011.2 |
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| CDS-3UTR TCA 90 bp | CCCCAACCTCAACTCCAAATCTCTTCAATGGTACTGGGATCTGCCCCACCACAAGAACACAGGGGAAACTaGGACCAGAAACTGAAACCA | + |
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Preference number: 4 (lower is better) Translates to: PQPQLQISSMVLGSAPPQEHRGN*DQKLKP Trigger: TGGTTTCAGTTTCTGGTCTCAGTTTCCCCTGTGTTC...TTGTGGTGGGGCAGATCCCAGTACCATTGAAGAGATTTGGAGTTGAGGTTGGGG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000203011.2 |
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| CDS-3UTR CCA 90 bp | GAATGTCACATCTACAAGTGTCAGAGACTAAATGGATATCATTCACTTCAGAGCCGCGGTTGGGTCCTTTaGGCACGAACCAGGGCCCAG | + |
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Preference number: 4 (lower is better) Translates to: ECHIYKCQRLNGYHSLQSRGWVL*ARTRAQ Trigger: CTGGGCCCTGGTTCGTGCCCAAAGGACCCAACCGCG...GCTCTGAAGTGAATGATATCCATTTAGTCTCTGACACTTGTAGATGTGACATTC 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000040361.8 ENSMUST00000203011.2 |
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| 3UTR CAA 72 bp | AGGCATAGTGCTAGTAGTACCCCAGAAACGTCACCTTaGTCTATCCCCCAACCTCAACTCCAAATCTCTTCA | + |
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Preference number: 4 (lower is better) Translates to: RHSASSTPETSP*SIPQPQLQISS Trigger: TGAAGAGATTTGGAGTTGAGGTTGGGGGATAGACAAAGGTGACGTTTCTGGGGTACTACTAGCACTATGCCT 47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000040361.8 ENSMUST00000203011.2 |
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| 3UTR CAA 72 bp | AACACGGTGGAGACAGAGTTAAAAAGCCTAGAGATTTaGGGCCACATGTCCCTTCTCCACAAAGACTCAAGT | + |
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Preference number: 4 (lower is better) Translates to: NTVETELKSLEI*GHMSLLHKDSS Trigger: ACTTGAGTCTTTGTGGAGAAGGGACATGTGGCCCAAAATCTCTAGGCTTTTTAACTCTGTCTCCACCGTGTT 46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000040361.8 ENSMUST00000203011.2 |
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| CDS-3UTR CCA 90 bp | AGAGTTAAAAAGCCTAGAGATTTTGGGCCACATGTCCCTTCTCCACAAAGACTCAACGCACGTACCAGATaGTCTCATTCTTCAGTTGTG | + |
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Preference number: 4 (lower is better) Translates to: RVKKPRDFGPHVPSPQRLNARTR*SHSSVV Trigger: CACAACTGAAGAATGAGACCATCTGGTACGTGCGTT...GAGTCTTTGTGGAGAAGGGACATGTGGCCCAAAATCTCTAGGCTTTTTAACTCT 44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000040361.8 |
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| CDS-3UTR CAA 90 bp | CAAGACTGGGCTTTCTTCCCCTGGGAACTCAAACAGCCACTGGTTAGGAGCCATCCGCGGTTGGGTCCTTaGGGCACGAACCAGGGCCCA | + |
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Preference number: 5 (lower is better) Translates to: QDWAFFPWELKQPLVRSHPRLGP*GTNQGP Trigger: TGGGCCCTGGTTCGTGCCCAAAGGACCCAACCGCGG...ATGGCTCCTAACCAGTGGCTGTTTGAGTTCCCAGGGGAAGAAAGCCCAGTCTTG 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000040361.8 ENSMUST00000203011.2 |
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| CDS CCA 90 bp | TGGGTGGGGCCAGAGGGAATGCAGGGTCTCCAGGGACATCAAGGCTaGGCCATTCACCCTTCACAGCAGGGCATAAGAGGTAACAGCAGA | + |
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Preference number: 5 (lower is better) Translates to: WVGPEGMQGLQGHQG*AIHPSQQGIRGNSR Trigger: TCTGCTGTTACCTCTTATGCCCTGCTGTGAAGGGTGAATGGCCCAGCCTTGATGTCCCTGGAGACCCTGCATTCCCTCTGGCCCCACCCA 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000203011.2 |
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| CDS-3UTR CAA 90 bp | CTGCTGCTAAAGGCTAAACATGGAGGCTTTGATCCTGACTGTGCCGGGTTTTTGCCGCGGTTGGGTCCTTaGGGCACGAACCAGGGCCCA | + |
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Preference number: 5 (lower is better) Translates to: LLLKAKHGGFDPDCAGFLPRLGP*GTNQGP Trigger: TGGGCCCTGGTTCGTGCCCAAAGGACCCAACCGCGG...CAAAAACCCGGCACAGTCAGGATCAAAGCCTCCATGTTTAGCCTTTAGCAGCAG 58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000040361.8 ENSMUST00000203011.2 |
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| CDS-3UTR CAA 90 bp | AGAATGCCCTACTCACCCTCTCAGAGAGGTGAGGGCATGGGCTGGAGGAATGCCGAAACTGAAACCAGGTaGGCTCTGGGGGTTATGGAT | + |
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Preference number: 5 (lower is better) Translates to: RMPYSPSQRGEGMGWRNAETETR*ALGVMD Trigger: ATCCATAACCCCCAGAGCCAACCTGGTTTCAGTTTC...GGCATTCCTCCAGCCCATGCCCTCACCTCTCTGAGAGGGTGAGTAGGGCATTCT 56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000203011.2 |
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| CDS-3UTR CAA 90 bp | AAATCTCTTCAATGGTACTGGGATCTGCCCCACCACAACCCAATGAAGAGTGGCGGTCTCATTCTTCAGTaGTGGCCCAAACAGGGGGTT | + |
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Preference number: 5 (lower is better) Translates to: KSLQWYWDLPHHNPMKSGGLILQ*WPKQGV Trigger: AACCCCCTGTTTGGGCCACAACTGAAGAATGAGACC...GCCACTCTTCATTGGGTTGTGGTGGGGCAGATCCCAGTACCATTGAAGAGATTT 51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000040361.8 |
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| CDS CAA 90 bp | CCAGATGGTCTCATTCTTCAGTTGTGGCCCAAACAGGGGGTTCAGTaGGGCCAAGATGGCGATGAGCCAGAAGAGGTAACAGCAGACAGC | + |
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Preference number: 6 (lower is better) Translates to: PDGLILQLWPKQGVQ*GQDGDEPEEVTADS Trigger: GCTGTCTGCTGTTACCTCTTCTGGCTCATCGCCATCTTGGCCCAACTGAACCCCCTGTTTGGGCCACAACTGAAGAATGAGACCATCTGG 54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000040361.8 |
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| CDS CAA 72 bp | CTCATTCTTCAGTTGTGGCCCAAACAGGGGGTTCAGTaGGGCCAAGATGGCGATGAGCCAGAAGAGGTAACA | + |
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Preference number: 6 (lower is better) Translates to: LILQLWPKQGVQ*GQDGDEPEEVT Trigger: TGTTACCTCTTCTGGCTCATCGCCATCTTGGCCCAACTGAACCCCCTGTTTGGGCCACAACTGAAGAATGAG 53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000040361.8 |
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