Pregenerated sensors for ATP6V0B (Mus musculus)
Ensembl gene IDs: ENSMUSG00000033379Ensembl transcript IDs: ENSMUST00000036380.14, ENSMUST00000149868.8, ENSMUST00000150204.8
Found 44 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR GCA 90 bp | TCTGGACTGCAATGCCTCCAGAGTCAACAGGCAGCAAGAGGTGAGTaGAGGGGAGACCCTGAACACCAAGCCCCAGAAAGGCTGAGGGAC | + |
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Preference number: 1 (lower is better) Translates to: SGLQCLQSQQAARGE*RGDPEHQAPERLRD Trigger: GTCCCTCAGCCTTTCTGGGGCTTGGTGTTCAGGGTCTCCCCTGCACTCACCTCTTGCTGCCTGTTGACTCTGGAGGCATTGCAGTCCAGA 59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000036380.14 ENSMUST00000150204.8 |
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| 3UTR CCA 90 bp | GTGCACAGCTGTACACAGTCACCATCAGCAGCCCACTCCCCACACTaGGGTTCAGTCTGGACTGCAATGCCTCCAGAGTCAACAGGCAGC | + |
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Preference number: 1 (lower is better) Translates to: VHSCTQSPSAAHSPH*GSVWTAMPPESTGS Trigger: GCTGCCTGTTGACTCTGGAGGCATTGCAGTCCAGACTGAACCCCAGTGTGGGGAGTGGGCTGCTGATGGTGACTGTGTACAGCTGTGCAC 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000036380.14 ENSMUST00000150204.8 |
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| 3UTR-3UTR GCA 90 bp | GCAGCCCACTCCCCACACTGGGGTTCAGTCTGGACTGCAATGCCTCCAGAGTCAGCAGCAAGAGGTGAGTaGAGGGGAGACCCTGAACAC | + |
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Preference number: 2 (lower is better) Translates to: AAHSPHWGSVWTAMPPESAARGE*RGDPEH Trigger: GTGTTCAGGGTCTCCCCTGCACTCACCTCTTGCTGC...TGACTCTGGAGGCATTGCAGTCCAGACTGAACCCCAGTGTGGGGAGTGGGCTGC 60% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 2 transcripts: ENSMUST00000036380.14 ENSMUST00000150204.8 |
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| 3UTR-3UTR TCA 90 bp | CACACTGGGGTTCAGTCTGGACTGCAATGCCTCCAGAGTCAACAGGCAGCAAGAGTGCAGGGGAGACCCTaGACACCAAGCCCCAGAAAG | + |
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Preference number: 2 (lower is better) Translates to: HTGVQSGLQCLQSQQAARVQGRP*TPSPRK Trigger: CTTTCTGGGGCTTGGTGTTCAGGGTCTCCCCTGCAC...TCTTGCTGCCTGTTGACTCTGGAGGCATTGCAGTCCAGACTGAACCCCAGTGTG 58% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 2 transcripts: ENSMUST00000036380.14 ENSMUST00000150204.8 |
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| 3UTR CCA 72 bp | TGTACACAGTCACCATCAGCAGCCCACTCCCCACACTaGGGTTCAGTCTGGACTGCAATGCCTCCAGAGTCA | + |
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Preference number: 3 (lower is better) Translates to: CTQSPSAAHSPH*GSVWTAMPPES Trigger: TGACTCTGGAGGCATTGCAGTCCAGACTGAACCCCAGTGTGGGGAGTGGGCTGCTGATGGTGACTGTGTACA 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000036380.14 ENSMUST00000150204.8 |
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| CDS-3UTR GCA 90 bp | GGGGGCACAGGTGCACAGCTGTACACAGTCACCATCAGCAGCCCACTCCCCACAGAGGCTGGGGTTCTGTaGATCCGCCAGGGCGGCCCC | + |
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Preference number: 4 (lower is better) Translates to: GGTGAQLYTVTISSPLPTEAGVL*IRQGGP Trigger: GGGGCCGCCCTGGCGGATGCACAGAACCCCAGCCTC...TGTGGGGAGTGGGCTGCTGATGGTGACTGTGTACAGCTGTGCACCTGTGCCCCC 67% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 2 transcripts: ENSMUST00000036380.14 ENSMUST00000150204.8 |
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| CDS-3UTR GCA 90 bp | GGGCACAGGTGCACAGCTGTACACAGTCACCATCAGCAGCCCACTCCCCACACTGAGGCTGGGGTTCTGTaGATCCGCCAGGGCGGCCCC | + |
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Preference number: 4 (lower is better) Translates to: GHRCTAVHSHHQQPTPHTEAGVL*IRQGGP Trigger: GGGGCCGCCCTGGCGGATGCACAGAACCCCAGCCTC...AGTGTGGGGAGTGGGCTGCTGATGGTGACTGTGTACAGCTGTGCACCTGTGCCC 66% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000036380.14 ENSMUST00000150204.8 |
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| CDS-3UTR GCA 90 bp | CACTCCCCACACTGGGGTTCAGTCTGGACTGCAATGCCTCCAGAGTCAACAGGCCCAGGGCGGCCCCACTaGCCACGATGCCCACGCAGA | + |
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Preference number: 4 (lower is better) Translates to: HSPHWGSVWTAMPPESTGPGRPH*PRCPRR Trigger: TCTGCGTGGGCATCGTGGGCAGTGGGGCCGCCCTGG...GCCTGTTGACTCTGGAGGCATTGCAGTCCAGACTGAACCCCAGTGTGGGGAGTG 64% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 2 transcripts: ENSMUST00000036380.14 ENSMUST00000150204.8 |
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| CDS-3UTR TCA 90 bp | GGGGGCACAGGTGCACAGCTGTACACAGTCACCATCAGCAGCCCACTCCCCACATGGACAGACCGACTGTaGGGCCAGCCCCAAACATGG | + |
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Preference number: 4 (lower is better) Translates to: GGTGAQLYTVTISSPLPTWTDRL*GQPQTW Trigger: CCATGTTTGGGGCTGGCCTCACAGTCGGTCTGTCCA...TGTGGGGAGTGGGCTGCTGATGGTGACTGTGTACAGCTGTGCACCTGTGCCCCC 62% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 2 transcripts: ENSMUST00000036380.14 ENSMUST00000150204.8 |
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| CDS-3UTR GCA 90 bp | CCCACTCCCCACACTGGGGTTCAGTCTGGACTGCAATGCCTCCAGAGTCAACAGCCCCACTGCCCACGATaGCCACGCAGACTCCACAGA | + |
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Preference number: 4 (lower is better) Translates to: PTPHTGVQSGLQCLQSQQPHCPR*PRRLHR Trigger: TCTGTGGAGTCTGCGTGGGCATCGTGGGCAGTGGGG...CTGTTGACTCTGGAGGCATTGCAGTCCAGACTGAACCCCAGTGTGGGGAGTGGG 61% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 2 transcripts: ENSMUST00000036380.14 ENSMUST00000150204.8 |
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| CDS-3UTR GCA 90 bp | GACTGCAATGCCTCCAGAGTCAACAGGCAGCAAGAGGTGAGTGCAGGGGAGACCCCCCACTGCCCACGATaGCCACGCAGACTCCACAGA | + |
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Preference number: 4 (lower is better) Translates to: DCNASRVNRQQEVSAGETPHCPR*PRRLHR Trigger: TCTGTGGAGTCTGCGTGGGCATCGTGGGCAGTGGGG...GGTCTCCCCTGCACTCACCTCTTGCTGCCTGTTGACTCTGGAGGCATTGCAGTC 61% GC, longest homopolymer 6 nt, total homopolymer stretches 10 nt. Matches the following 2 transcripts: ENSMUST00000036380.14 ENSMUST00000150204.8 |
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| CDS-3UTR TCA 90 bp | AGCAGCCCACTCCCCACACTGGGGTTCAGTCTGGACTGCAATGCCTCCAGAGTCCCAGATTCGACCACATaGAGGGGGAAGTTTCCGTCA | + |
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Preference number: 4 (lower is better) Translates to: SSPLPTLGFSLDCNASRVPDSTT*RGKFPS Trigger: TGACGGAAACTTCCCCCTTCATGTGGTCGAATCTGG...GACTCTGGAGGCATTGCAGTCCAGACTGAACCCCAGTGTGGGGAGTGGGCTGCT 58% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000036380.14 |
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| CDS-3UTR TCA 90 bp | CACACTGGGGTTCAGTCTGGACTGCAATGCCTCCAGAGTCAACAGGCAGCAAGATGGACAGACCGACTGTaGGGCCAGCCCCAAACATGG | + |
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Preference number: 4 (lower is better) Translates to: HTGVQSGLQCLQSQQAARWTDRL*GQPQTW Trigger: CCATGTTTGGGGCTGGCCTCACAGTCGGTCTGTCCA...TCTTGCTGCCTGTTGACTCTGGAGGCATTGCAGTCCAGACTGAACCCCAGTGTG 58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000036380.14 ENSMUST00000150204.8 |
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| CDS-3UTR CCA 90 bp | GGGCACAGGTGCACAGCTGTACACAGTCACCATCAGCAGCCCACTCCCCACACTGGCCAGCCCCAAACATaGAGTAACCTGCATGGTAGT | + |
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Preference number: 4 (lower is better) Translates to: GHRCTAVHSHHQQPTPHTGQPQT*SNLHGS Trigger: ACTACCATGCAGGTTACTCCATGTTTGGGGCTGGCC...AGTGTGGGGAGTGGGCTGCTGATGGTGACTGTGTACAGCTGTGCACCTGTGCCC 58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000036380.14 ENSMUST00000150204.8 |
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| CDS-3UTR CCA 90 bp | GGGCACAGGTGCACAGCTGTACACAGTCACCATCAGCAGCCCACTCCCCACACTCCCCAAAGAGGCCAATaGCACTGCCAAAGATCTCCA | + |
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Preference number: 4 (lower is better) Translates to: GHRCTAVHSHHQQPTPHTPQRGQ*HCQRSP Trigger: TGGAGATCTTTGGCAGTGCCATTGGCCTCTTTGGGG...AGTGTGGGGAGTGGGCTGCTGATGGTGACTGTGTACAGCTGTGCACCTGTGCCC 58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000036380.14 ENSMUST00000150204.8 |
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| CDS-3UTR TCA 90 bp | GCAGCCCACTCCCCACACTGGGGTTCAGTCTGGACTGCAATGCCTCCAGAGTCACCAAGTTCTTGGTTTTaGTTCTGGGGGCTTTCACCC | + |
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Preference number: 4 (lower is better) Translates to: AAHSPHWGSVWTAMPPESPSSWF*FWGLSP Trigger: GGGTGAAAGCCCCCAGAATCAAAACCAAGAACTTGG...TGACTCTGGAGGCATTGCAGTCCAGACTGAACCCCAGTGTGGGGAGTGGGCTGC 57% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt. Matches the following 2 transcripts: ENSMUST00000036380.14 ENSMUST00000150204.8 |
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| CDS-3UTR TCA 90 bp | GGGGGCACAGGTGCACAGCTGTACACAGTCACCATCAGCAGCCCACTCCCCACATTCACTCTGGAGGTCTaGAGGATTGCAACAATGACC | + |
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Preference number: 4 (lower is better) Translates to: GGTGAQLYTVTISSPLPTFTLEV*RIATMT Trigger: GGTCATTGTTGCAATCCTTCAGACCTCCAGAGTGAA...TGTGGGGAGTGGGCTGCTGATGGTGACTGTGTACAGCTGTGCACCTGTGCCCCC 57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000036380.14 ENSMUST00000150204.8 |
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| CDS-3UTR TCA 90 bp | CACTCCCCACACTGGGGTTCAGTCTGGACTGCAATGCCTCCAGAGTCAACAGGCCCAAGTTCTTGGTTTTaGTTCTGGGGGCTTTCACCC | + |
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Preference number: 4 (lower is better) Translates to: HSPHWGSVWTAMPPESTGPSSWF*FWGLSP Trigger: GGGTGAAAGCCCCCAGAATCAAAACCAAGAACTTGG...GCCTGTTGACTCTGGAGGCATTGCAGTCCAGACTGAACCCCAGTGTGGGGAGTG 56% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt. Matches the following 2 transcripts: ENSMUST00000036380.14 ENSMUST00000150204.8 |
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| CDS-3UTR TCA 90 bp | CTGGACTGCAATGCCTCCAGAGTCAACAGGCAGCAAGAGGTGAGTGCAGGGGAGGAAGGATTGCAACAATaGCCCCAAAGAGGCCAATGG | + |
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Preference number: 4 (lower is better) Translates to: LDCNASRVNRQQEVSAGEEGLQQ*PQRGQW Trigger: CCATTGGCCTCTTTGGGGTCATTGTTGCAATCCTTC...CTCCCCTGCACTCACCTCTTGCTGCCTGTTGACTCTGGAGGCATTGCAGTCCAG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000036380.14 ENSMUST00000150204.8 |
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| CDS-3UTR CCA 90 bp | TCTGGACTGCAATGCCTCCAGAGTCAACAGGCAGCAAGAGGTGAGTGCAGGGGAGGCCAGCCCCAAACATaGAGTAACCTGCATGGTAGT | + |
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Preference number: 4 (lower is better) Translates to: SGLQCLQSQQAARGECRGGQPQT*SNLHGS Trigger: ACTACCATGCAGGTTACTCCATGTTTGGGGCTGGCC...TCCCCTGCACTCACCTCTTGCTGCCTGTTGACTCTGGAGGCATTGCAGTCCAGA 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000036380.14 ENSMUST00000150204.8 |
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| CDS-3UTR CCA 90 bp | GCAGCCCACTCCCCACACTGGGGTTCAGTCTGGACTGCAATGCCTCCAGAGTCATTTTTACAAAGAGGCTaGGGTTCTGTGCATCCGCCA | + |
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Preference number: 4 (lower is better) Translates to: AAHSPHWGSVWTAMPPESFLQRG*GSVHPP Trigger: TGGCGGATGCACAGAACCCCAGCCTCTTTGTAAAAA...TGACTCTGGAGGCATTGCAGTCCAGACTGAACCCCAGTGTGGGGAGTGGGCTGC 56% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 2 transcripts: ENSMUST00000036380.14 ENSMUST00000150204.8 |
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| CDS-3UTR CCA 90 bp | CCCACTCCCCACACTGGGGTTCAGTCTGGACTGCAATGCCTCCAGAGTCAACAGCACCCATCTTCACTCTaGAGGTCTGAAGGATTGCAA | + |
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Preference number: 4 (lower is better) Translates to: PTPHTGVQSGLQCLQSQQHPSSL*RSEGLQ Trigger: TTGCAATCCTTCAGACCTCCAGAGTGAAGATGGGTG...CTGTTGACTCTGGAGGCATTGCAGTCCAGACTGAACCCCAGTGTGGGGAGTGGG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000036380.14 ENSMUST00000150204.8 |
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| CDS-3UTR CCA 90 bp | ATCAGCAGCCCACTCCCCACACTGGGGTTCAGTCTGGACTGCAATGCCTCCAGACACCCATCTTCACTCTaGAGGTCTGAAGGATTGCAA | + |
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Preference number: 4 (lower is better) Translates to: ISSPLPTLGFSLDCNASRHPSSL*RSEGLQ Trigger: TTGCAATCCTTCAGACCTCCAGAGTGAAGATGGGTG...TCTGGAGGCATTGCAGTCCAGACTGAACCCCAGTGTGGGGAGTGGGCTGCTGAT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000036380.14 ENSMUST00000150204.8 |
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| CDS-3UTR TCA 90 bp | GGGGGCACAGGTGCACAGCTGTACACAGTCACCATCAGCAGCCCACTCCCCACACAAAGATCTCCACGATaGGAATTTTTACAAAGAGGC | + |
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Preference number: 4 (lower is better) Translates to: GGTGAQLYTVTISSPLPTQRSPR*EFLQRG Trigger: GCCTCTTTGTAAAAATTCTCATCGTGGAGATCTTTG...TGTGGGGAGTGGGCTGCTGATGGTGACTGTGTACAGCTGTGCACCTGTGCCCCC 53% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt. Matches the following 2 transcripts: ENSMUST00000036380.14 ENSMUST00000150204.8 |
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| CDS-3UTR TCA 90 bp | TCTGGACTGCAATGCCTCCAGAGTCAACAGGCAGCAAGAGGTGAGTGCAGGGGATTCACTCTGGAGGTCTaGAGGATTGCAACAATGACC | + |
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Preference number: 4 (lower is better) Translates to: SGLQCLQSQQAARGECRGFTLEV*RIATMT Trigger: GGTCATTGTTGCAATCCTTCAGACCTCCAGAGTGAA...TCCCCTGCACTCACCTCTTGCTGCCTGTTGACTCTGGAGGCATTGCAGTCCAGA 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000036380.14 ENSMUST00000150204.8 |
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| CDS-3UTR GCA 90 bp | GGGGGCACAGGTGCACAGCTGTACACAGTCACCATCAGCAGCCCACTCCCCACAGTTGCTGATGACAATTaGCATGATGATGCCATAGAT | + |
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Preference number: 4 (lower is better) Translates to: GGTGAQLYTVTISSPLPTVADDN*HDDAID Trigger: ATCTATGGCATCATCATGGCAATTGTCATCAGCAAC...TGTGGGGAGTGGGCTGCTGATGGTGACTGTGTACAGCTGTGCACCTGTGCCCCC 53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000036380.14 ENSMUST00000150204.8 |
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| CDS-3UTR GCA 90 bp | GGGCACAGGTGCACAGCTGTACACAGTCACCATCAGCAGCCCACTCCCCACACTGTTGCTGATGACAATTaGCATGATGATGCCATAGAT | + |
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Preference number: 4 (lower is better) Translates to: GHRCTAVHSHHQQPTPHTVADDN*HDDAID Trigger: ATCTATGGCATCATCATGGCAATTGTCATCAGCAAC...AGTGTGGGGAGTGGGCTGCTGATGGTGACTGTGTACAGCTGTGCACCTGTGCCC 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000036380.14 ENSMUST00000150204.8 |
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| CDS-3UTR TCA 90 bp | CTGGACTGCAATGCCTCCAGAGTCAACAGGCAGCAAGAGGTGAGTGCAGGGGAGCAAAGATCTCCACGATaGGAATTTTTACAAAGAGGC | + |
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Preference number: 4 (lower is better) Translates to: LDCNASRVNRQQEVSAGEQRSPR*EFLQRG Trigger: GCCTCTTTGTAAAAATTCTCATCGTGGAGATCTTTG...CTCCCCTGCACTCACCTCTTGCTGCCTGTTGACTCTGGAGGCATTGCAGTCCAG 51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000036380.14 ENSMUST00000150204.8 |
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| CDS-3UTR TCA 90 bp | CCAGGAAAACCAGCAATAAATAACAGTAGGGCACGGCCCCACCCATACAGGTCAGAAGGATTGCAACAATaGCCCCAAAGAGGCCAATGG | + |
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Preference number: 4 (lower is better) Translates to: PGKPAINNSRARPHPYRSEGLQQ*PQRGQW Trigger: CCATTGGCCTCTTTGGGGTCATTGTTGCAATCCTTC...TGACCTGTATGGGTGGGGCCGTGCCCTACTGTTATTTATTGCTGGTTTTCCTGG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 2 transcripts: ENSMUST00000036380.14 ENSMUST00000150204.8 |
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| CDS-3UTR CCA 90 bp | CCAGGAAAACCAGCAATAAATAACAGTAGGGCACGGCCCCACCCATACAGGTCATTTTTACAAAGAGGCTaGGGTTCTGTGCATCCGCCA | + |
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Preference number: 4 (lower is better) Translates to: PGKPAINNSRARPHPYRSFLQRG*GSVHPP Trigger: TGGCGGATGCACAGAACCCCAGCCTCTTTGTAAAAA...TGACCTGTATGGGTGGGGCCGTGCCCTACTGTTATTTATTGCTGGTTTTCCTGG 50% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 2 transcripts: ENSMUST00000036380.14 ENSMUST00000150204.8 |
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| CDS GCA 90 bp | TTACAAAGAGGCTGGGGTTCTGTGCATCCGCCAGGGCGGCCCCACTaGCCACGATGCCCACGCAGACTCCACAGAACAGGTTGGACAGAC | + |
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Preference number: 5 (lower is better) Translates to: LQRGWGSVHPPGRPH*PRCPRRLHRTGWTD Trigger: GTCTGTCCAACCTGTTCTGTGGAGTCTGCGTGGGCATCGTGGGCAGTGGGGCCGCCCTGGCGGATGCACAGAACCCCAGCCTCTTTGTAA 62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000036380.14 ENSMUST00000150204.8 |
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| CDS TCA 90 bp | CGATGCCCACGCAGACTCCACAGAACAGGTTGGACAGACCGACTGTaGGGCCAGCCCCAAACATGGAGTAACCTGCATGGTAGTTTCGAT | + |
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Preference number: 5 (lower is better) Translates to: RCPRRLHRTGWTDRL*GQPQTWSNLHGSFD Trigger: ATCGAAACTACCATGCAGGTTACTCCATGTTTGGGGCTGGCCTCACAGTCGGTCTGTCCAACCTGTTCTGTGGAGTCTGCGTGGGCATCG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000036380.14 ENSMUST00000150204.8 |
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| CDS CCA 90 bp | CCGTCAGGAACCATGCCACATCAAAGCGAAAGCCCAGGTCAAAGATaGTGTAGCAGATTCCCACAACGACCATGCAGGCCCAGAAGGCCA | + |
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Preference number: 5 (lower is better) Translates to: PSGTMPHQSESPGQR*CSRFPQRPCRPRRP Trigger: TGGCCTTCTGGGCCTGCATGGTCGTTGTGGGAATCTGCTACACCATCTTTGACCTGGGCTTTCGCTTTGATGTGGCATGGTTCCTGACGG 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000036380.14 |
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| CDS-3UTR CAA 90 bp | CACTCCCCACACTGGGGTTCAGTCTGGACTGCAATGCCTCCAGAGTCAACAGGCACCAAGTTCTTGGTTTaGATTCTGGGGGCTTTCACC | + |
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Preference number: 5 (lower is better) Translates to: HSPHWGSVWTAMPPESTGTKFLV*ILGAFT Trigger: GGTGAAAGCCCCCAGAATCAAAACCAAGAACTTGGT...GCCTGTTGACTCTGGAGGCATTGCAGTCCAGACTGAACCCCAGTGTGGGGAGTG 54% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 2 transcripts: ENSMUST00000036380.14 ENSMUST00000150204.8 |
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| CDS-3UTR CAA 90 bp | GGGGGCACAGGTGCACAGCTGTACACAGTCACCATCAGCAGCCCACTCCCCACAATACTAACCAAGTTCTaGGTTTTGATTCTGGGGGCT | + |
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Preference number: 5 (lower is better) Translates to: GGTGAQLYTVTISSPLPTILTKF*VLILGA Trigger: AGCCCCCAGAATCAAAACCAAGAACTTGGTTAGTAT...TGTGGGGAGTGGGCTGCTGATGGTGACTGTGTACAGCTGTGCACCTGTGCCCCC 54% GC, longest homopolymer 5 nt, total homopolymer stretches 18 nt. Matches the following 2 transcripts: ENSMUST00000036380.14 ENSMUST00000150204.8 |
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| CDS-3UTR CAA 90 bp | ATCAGCAGCCCACTCCCCACACTGGGGTTCAGTCTGGACTGCAATGCCTCCAGAAAAGGCTCAGCCATGTaGCTGATGACAATTGCCATG | + |
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Preference number: 5 (lower is better) Translates to: ISSPLPTLGFSLDCNASRKGSAM*LMTIAM Trigger: CATGGCAATTGTCATCAGCAACATGGCTGAGCCTTT...TCTGGAGGCATTGCAGTCCAGACTGAACCCCAGTGTGGGGAGTGGGCTGCTGAT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 2 transcripts: ENSMUST00000036380.14 ENSMUST00000150204.8 |
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| CDS-3UTR CAA 90 bp | AGCAGCCCACTCCCCACACTGGGGTTCAGTCTGGACTGCAATGCCTCCAGAGTCATACTAACCAAGTTCTaGGTTTTGATTCTGGGGGCT | + |
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Preference number: 5 (lower is better) Translates to: SSPLPTLGFSLDCNASRVILTKF*VLILGA Trigger: AGCCCCCAGAATCAAAACCAAGAACTTGGTTAGTAT...GACTCTGGAGGCATTGCAGTCCAGACTGAACCCCAGTGTGGGGAGTGGGCTGCT 53% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt. Matches the following 2 transcripts: ENSMUST00000036380.14 ENSMUST00000150204.8 |
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| CDS-3UTR CAA 90 bp | GTCCCAGGAAAACCAGCAATAAATAACAGTAGGGCACGGCCCCACCCATACAGGAAAGGCTCAGCCATGTaGCTGATGACAATTGCCATG | + |
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Preference number: 5 (lower is better) Translates to: VPGKPAINNSRARPHPYRKGSAM*LMTIAM Trigger: CATGGCAATTGTCATCAGCAACATGGCTGAGCCTTT...CCTGTATGGGTGGGGCCGTGCCCTACTGTTATTTATTGCTGGTTTTCCTGGGAC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000036380.14 ENSMUST00000150204.8 |
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| CDS GCA 72 bp | TCTGTGCATCCGCCAGGGCGGCCCCACTGCCCACGATaGCCACGCAGACTCCACAGAACAGGTTGGACAGAC | + |
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Preference number: 6 (lower is better) Translates to: SVHPPGRPHCPR*PRRLHRTGWTD Trigger: GTCTGTCCAACCTGTTCTGTGGAGTCTGCGTGGGCATCGTGGGCAGTGGGGCCGCCCTGGCGGATGCACAGA 65% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000036380.14 ENSMUST00000150204.8 |
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| CDS TCA 72 bp | CGCAGACTCCACAGAACAGGTTGGACAGACCGACTGTaGGGCCAGCCCCAAACATGGAGTAACCTGCATGGT | + |
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Preference number: 6 (lower is better) Translates to: RRLHRTGWTDRL*GQPQTWSNLHG Trigger: ACCATGCAGGTTACTCCATGTTTGGGGCTGGCCTCACAGTCGGTCTGTCCAACCTGTTCTGTGGAGTCTGCG 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000036380.14 ENSMUST00000149868.8 ENSMUST00000150204.8 |
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| CDS GCA 72 bp | GGTCAAAGATGGTGTAGCAGATTCCCACAACGACCATaGAGGCCCAGAAGGCCACAAAGATCCCGAGGTAGA | + |
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Preference number: 6 (lower is better) Translates to: GQRWCSRFPQRP*RPRRPQRSRGR Trigger: TCTACCTCGGGATCTTTGTGGCCTTCTGGGCCTGCATGGTCGTTGTGGGAATCTGCTACACCATCTTTGACC 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000036380.14 |
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| CDS CCA 72 bp | ACCATGCCACATCAAAGCGAAAGCCCAGGTCAAAGATaGTGTAGCAGATTCCCACAACGACCATGCAGGCCC | + |
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Preference number: 6 (lower is better) Translates to: TMPHQSESPGQR*CSRFPQRPCRP Trigger: GGGCCTGCATGGTCGTTGTGGGAATCTGCTACACCATCTTTGACCTGGGCTTTCGCTTTGATGTGGCATGGT 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000036380.14 |
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| CDS TCA 72 bp | CCATCTTCACTCTGGAGGTCTGAAGGATTGCAACAATaGCCCCAAAGAGGCCAATGGCACTGCCAAAGATCT | + |
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Preference number: 6 (lower is better) Translates to: PSSLWRSEGLQQ*PQRGQWHCQRS Trigger: AGATCTTTGGCAGTGCCATTGGCCTCTTTGGGGTCATTGTTGCAATCCTTCAGACCTCCAGAGTGAAGATGG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000036380.14 ENSMUST00000150204.8 |
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| CDS TCA 72 bp | CAAAGAGGCCAATGGCACTGCCAAAGATCTCCACGATaGGAATTTTTACAAAGAGGCTGGGGTTCTGTGCAT | + |
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Preference number: 6 (lower is better) Translates to: QRGQWHCQRSPR*EFLQRGWGSVH Trigger: ATGCACAGAACCCCAGCCTCTTTGTAAAAATTCTCATCGTGGAGATCTTTGGCAGTGCCATTGGCCTCTTTG 47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000036380.14 ENSMUST00000150204.8 |
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