Pregenerated sensors for ATP5PB (Mus musculus)
Ensembl gene IDs: ENSMUSG00000000563Ensembl transcript IDs: ENSMUST00000118209.8, ENSMUST00000133320.2, ENSMUST00000199311.2
Found 21 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR-3UTR GCA 90 bp | TCCGCATACAGAGCAAGGATCAGAAATACCTTACTGGCCAATAGGGTTAAGCCAATGCTCTTCACCACATaGTTTTCTACCCAGTCTATC | + |
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Preference number: 2 (lower is better) Translates to: SAYRARIRNTLLANRVKPMLFTT*FSTQSI Trigger: GATAGACTGGGTAGAAAAGCATGTGGTGAAGAGCAT...TGGCTTAACCCTATTGGCCAGTAAGGTATTTCTGATCCTTGCTCTGTATGCGGA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000133320.2 |
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| 3UTR-3UTR CCA 90 bp | CAGATAACTCCGCATACAGAGCAAGGATCAGAAATACCTTACTGGCCAATAGGGCCATTTAACTCTCTCTaGCTATCACAACTGAGAAAG | + |
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Preference number: 2 (lower is better) Translates to: QITPHTEQGSEIPYWPIGPFNSL*LSQLRK Trigger: CTTTCTCAGTTGTGATAGCCAGAGAGAGTTAAATGG...CCCTATTGGCCAGTAAGGTATTTCTGATCCTTGCTCTGTATGCGGAGTTATCTG 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000118209.8 ENSMUST00000133320.2 |
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| 3UTR-3UTR CCA 90 bp | CAGAAAGAGTTCTTCACATATACTAGTTCCCATTTAACTCTCTCTGGCTATCACCTTGGTAATTTCAGTTaGGCAGCAAGTTGCTGCAAG | + |
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Preference number: 2 (lower is better) Translates to: QKEFFTYTSSHLTLSGYHLGNFS*AASCCK Trigger: CTTGCAGCAACTTGCTGCCCAACTGAAATTACCAAG...GTGATAGCCAGAGAGAGTTAAATGGGAACTAGTATATGTGAAGAACTCTTTCTG 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000118209.8 ENSMUST00000133320.2 |
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| 3UTR-3UTR TCA 90 bp | AGCAAGTTGCTGCAAGTTGCTTATTCAAATTATGATCAGATAACTCCGCATACATCTCAAGCCACAAGGTaGATGACAACCAAAGAGCTT | + |
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Preference number: 2 (lower is better) Translates to: SKLLQVAYSNYDQITPHTSQATR*MTTKEL Trigger: AAGCTCTTTGGTTGTCATTCACCTTGTGGCTTGAGA...TGTATGCGGAGTTATCTGATCATAATTTGAATAAGCAACTTGCAGCAACTTGCT 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000133320.2 |
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| 3UTR-3UTR CCA 90 bp | CAGAAAGAGTTCTTCACATATACTAGTTCCCATTTAACTCTCTCTGGCTATCACCCATTTAACTCTCTCTaGCTATCACAACTGAGAAAG | + |
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Preference number: 2 (lower is better) Translates to: QKEFFTYTSSHLTLSGYHPFNSL*LSQLRK Trigger: CTTTCTCAGTTGTGATAGCCAGAGAGAGTTAAATGG...GTGATAGCCAGAGAGAGTTAAATGGGAACTAGTATATGTGAAGAACTCTTTCTG 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000118209.8 ENSMUST00000133320.2 ENSMUST00000199311.2 |
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| 3UTR-3UTR CCA 90 bp | AGCAAGTTGCTGCAAGTTGCTTATTCAAATTATGATCAGATAACTCCGCATACATCAGAAATACCTTACTaGCCAATAGGGTTAAGCCAC | + |
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Preference number: 2 (lower is better) Translates to: SKLLQVAYSNYDQITPHTSEIPY*PIGLSH Trigger: GTGGCTTAACCCTATTGGCCAGTAAGGTATTTCTGA...TGTATGCGGAGTTATCTGATCATAATTTGAATAAGCAACTTGCAGCAACTTGCT 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000118209.8 ENSMUST00000133320.2 |
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| 3UTR-3UTR CCA 90 bp | AGCAAGTTGCTGCAAGTTGCTTATTCAAATTATGATCAGATAACTCCGCATACACCATTTAACTCTCTCTaGCTATCACAACTGAGAAAG | + |
|
Preference number: 2 (lower is better) Translates to: SKLLQVAYSNYDQITPHTPFNSL*LSQLRK Trigger: CTTTCTCAGTTGTGATAGCCAGAGAGAGTTAAATGG...TGTATGCGGAGTTATCTGATCATAATTTGAATAAGCAACTTGCAGCAACTTGCT 38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000118209.8 ENSMUST00000133320.2 |
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| 3UTR TCA 72 bp | CTTGTTGCCTGTAATACCATCTCTCAAGCCACAAGGTaGATGACAACCAAAGAGCTTAAAGCTGAAAGACGG | + |
|
Preference number: 3 (lower is better) Translates to: LVACNTISQATR*MTTKELKAERR Trigger: CCGTCTTTCAGCTTTAAGCTCTTTGGTTGTCATTCACCTTGTGGCTTGAGAGATGGTATTACAGGCAACAAG 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000133320.2 |
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| 3UTR TCA 72 bp | TTGCCTGTAATACCATCTCTCAAGCCACAAGGTGAATaGCAACCAAAGAGCTTAAAGCTGAAAGACGGTCAA | + |
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Preference number: 3 (lower is better) Translates to: LPVIPSLKPQGE*QPKSLKLKDGQ Trigger: TTGACCGTCTTTCAGCTTTAAGCTCTTTGGTTGTCATTCACCTTGTGGCTTGAGAGATGGTATTACAGGCAA 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000133320.2 |
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| 3UTR-3UTR CAA 90 bp | CAGATAACTCCGCATACAGAGCAAGGATCAGAAATACCTTACTGGCCAATAGGGGCAAGTTGCTGCAAGTaGCTTATTCAAATTATGATC | + |
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Preference number: 3 (lower is better) Translates to: QITPHTEQGSEIPYWPIGASCCK*LIQIMI Trigger: GATCATAATTTGAATAAGCAACTTGCAGCAACTTGC...CCCTATTGGCCAGTAAGGTATTTCTGATCCTTGCTCTGTATGCGGAGTTATCTG 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000118209.8 ENSMUST00000133320.2 |
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| 3UTR-3UTR CAA 90 bp | CAGAAAGAGTTCTTCACATATACTAGTTCCCATTTAACTCTCTCTGGCTATCACTGTGAAAGGCCCTTGTaGCCTGTAATACCATCTCTC | + |
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Preference number: 3 (lower is better) Translates to: QKEFFTYTSSHLTLSGYHCERPL*PVIPSL Trigger: GAGAGATGGTATTACAGGCAACAAGGGCCTTTCACA...GTGATAGCCAGAGAGAGTTAAATGGGAACTAGTATATGTGAAGAACTCTTTCTG 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000133320.2 |
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| 3UTR-3UTR CAA 90 bp | CAGAAAGAGTTCTTCACATATACTAGTTCCCATTTAACTCTCTCTGGCTATCACGCAAGTTGCTGCAAGTaGCTTATTCAAATTATGATC | + |
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Preference number: 3 (lower is better) Translates to: QKEFFTYTSSHLTLSGYHASCCK*LIQIMI Trigger: GATCATAATTTGAATAAGCAACTTGCAGCAACTTGC...GTGATAGCCAGAGAGAGTTAAATGGGAACTAGTATATGTGAAGAACTCTTTCTG 38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000118209.8 ENSMUST00000133320.2 |
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| CDS-3UTR CCA 90 bp | CAGATAACTCCGCATACAGAGCAAGGATCAGAAATACCTTACTGGCCAATAGGGGACACGGGGCCGCTGTaGCGGCAGCAGAAAGCACCA | + |
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Preference number: 4 (lower is better) Translates to: QITPHTEQGSEIPYWPIGDTGPL*RQQKAP Trigger: TGGTGCTTTCTGCTGCCGCCACAGCGGCCCCGTGTC...CCCTATTGGCCAGTAAGGTATTTCTGATCCTTGCTCTGTATGCGGAGTTATCTG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000118209.8 ENSMUST00000133320.2 |
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| CDS-3UTR CCA 90 bp | TACAGAGCAAGGATCAGAAATACCTTACTGGCCAATAGGGTTAAGCCACTAAGTGACACGGGGCCGCTGTaGCGGCAGCAGAAAGCACCA | + |
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Preference number: 4 (lower is better) Translates to: YRARIRNTLLANRVKPLSDTGPL*RQQKAP Trigger: TGGTGCTTTCTGCTGCCGCCACAGCGGCCCCGTGTC...ACTTAGTGGCTTAACCCTATTGGCCAGTAAGGTATTTCTGATCCTTGCTCTGTA 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000118209.8 ENSMUST00000133320.2 |
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| CDS-3UTR CCA 90 bp | TTGGGCAGCAAGTTGCTGCAAGTTGCTTATTCAAATTATGATCAGATAACTCCGTCCCAGAACCTATGCTaGGCTGCCCACAGCAACCTC | + |
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Preference number: 4 (lower is better) Translates to: LGSKLLQVAYSNYDQITPSQNLC*AAHSNL Trigger: GAGGTTGCTGTGGGCAGCCCAGCATAGGTTCTGGGA...CGGAGTTATCTGATCATAATTTGAATAAGCAACTTGCAGCAACTTGCTGCCCAA 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000133320.2 |
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| CDS-3UTR CCA 90 bp | TCCGCATACAGAGCAAGGATCAGAAATACCTTACTGGCCAATAGGGTTAAGCCATCACAGGACCAGATTTaGTTCCCAGAACCTATGCTG | + |
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Preference number: 4 (lower is better) Translates to: SAYRARIRNTLLANRVKPSQDQI*FPEPML Trigger: CAGCATAGGTTCTGGGAACCAAATCTGGTCCTGTGA...TGGCTTAACCCTATTGGCCAGTAAGGTATTTCTGATCCTTGCTCTGTATGCGGA 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000133320.2 |
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| CDS-3UTR GCA 90 bp | GCAAGGATCAGAAATACCTTACTGGCCAATAGGGTTAAGCCACTAAGTGGACCTATGCTCTTCACCACATaGTTTTCTACCCAGTCTATC | + |
|
Preference number: 4 (lower is better) Translates to: ARIRNTLLANRVKPLSGPMLFTT*FSTQSI Trigger: GATAGACTGGGTAGAAAAGCATGTGGTGAAGAGCAT...AGGTCCACTTAGTGGCTTAACCCTATTGGCCAGTAAGGTATTTCTGATCCTTGC 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000118209.8 |
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| CDS-3UTR GCA 90 bp | TCAGATAACTCCGCATACAGAGCAAGGATCAGAAATACCTTACTGGCCAATAGGCCTGGATTTGTTTCATaGTCGACTGCTTTACTTCTT | + |
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Preference number: 4 (lower is better) Translates to: SDNSAYRARIRNTLLANRPGFVS*STALLL Trigger: AAGAAGTAAAGCAGTCGAGCATGAAACAAATCCAGG...CCTATTGGCCAGTAAGGTATTTCTGATCCTTGCTCTGTATGCGGAGTTATCTGA 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000118209.8 |
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| CDS-3UTR GCA 90 bp | CAGAAAGAGTTCTTCACATATACTAGTTCCCATTTAACTCTCTCTGGCTATCACCCTGGATTTGTTTCATaGTCGACTGCTTTACTTCTT | + |
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Preference number: 4 (lower is better) Translates to: QKEFFTYTSSHLTLSGYHPGFVS*STALLL Trigger: AAGAAGTAAAGCAGTCGAGCATGAAACAAATCCAGG...GTGATAGCCAGAGAGAGTTAAATGGGAACTAGTATATGTGAAGAACTCTTTCTG 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000118209.8 ENSMUST00000199311.2 |
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| CDS-3UTR CAA 90 bp | CAGATAACTCCGCATACAGAGCAAGGATCAGAAATACCTTACTGGCCAATAGGGTTCACAGGACCAGATTaGGTTCCCAGAACCTATGCT | + |
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Preference number: 5 (lower is better) Translates to: QITPHTEQGSEIPYWPIGFTGPD*VPRTYA Trigger: AGCATAGGTTCTGGGAACCAAATCTGGTCCTGTGAA...CCCTATTGGCCAGTAAGGTATTTCTGATCCTTGCTCTGTATGCGGAGTTATCTG 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000133320.2 |
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| CDS GCA 72 bp | TATGCTGGGCTGCCCACAGCAACCTCTAACTCCAGCTaGAGATCTAATACCTTTTTCTCTGCCTCCTGGACC | + |
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Preference number: 6 (lower is better) Translates to: YAGLPTATSNSS*RSNTFFSASWT Trigger: GGTCCAGGAGGCAGAGAAAAAGGTATTAGATCTGCAGCTGGAGTTAGAGGTTGCTGTGGGCAGCCCAGCATA 53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000133320.2 |
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