Pregenerated sensors for ATP5MD (Mus musculus)
Ensembl gene IDs: ENSMUSG00000071528Ensembl transcript IDs: ENSMUST00000235771.2, ENSMUST00000236170.2, ENSMUST00000237720.2
Found 54 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR TCA 90 bp | TGTGCATGCCAGCTAGGGAGAAGTGAAAGGCCCTGTCCCTGGAGGTaGAAACCTGCTCCTTACAGTTGTCCCCACCCTTCCACATCAGTG | + |
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Preference number: 1 (lower is better) Translates to: CACQLGRSERPCPWR*KPAPYSCPHPSTSV Trigger: CACTGATGTGGAAGGGTGGGGACAACTGTAAGGAGCAGGTTTTCACCTCCAGGGACAGGGCCTTTCACTTCTCCCTAGCTGGCATGCACA 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000235771.2 |
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| 3UTR GCA 90 bp | AGACTCACAATCACTGTGATCCTCCTGCTTCACCCTCCCCAGTGGTaGTGGAGTACAGTAGAAGACTCTGCACCCAGATCCTTGGCCACT | + |
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Preference number: 1 (lower is better) Translates to: RLTITVILLLHPPQW*WSTVEDSAPRSLAT Trigger: AGTGGCCAAGGATCTGGGTGCAGAGTCTTCTACTGTACTCCAGCACCACTGGGGAGGGTGAAGCAGGAGGATCACAGTGATTGTGAGTCT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000235771.2 |
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| 3UTR TCA 90 bp | GGAGCTGAGGTTACAGTTGTAAGACCCTGGCCTGGGAGTGGGGTCTaGACTCAGGTCCTCTGTCTTACAGTGTCTGCAGTACTTGATCGT | + |
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Preference number: 1 (lower is better) Translates to: GAEVTVVRPWPGSGV*TQVLCLTVSAVLDR Trigger: ACGATCAAGTACTGCAGACACTGTAAGACAGAGGACCTGAGTTCAGACCCCACTCCCAGGCCAGGGTCTTACAACTGTAACCTCAGCTCC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000235771.2 |
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| 3UTR TCA 90 bp | CCACCCTTCCACATCAGTGTCCTGGCATGCGAGTGTGCAAGGACGTaGGCTCCCAACAATAAAACATTAAGTCACTTCACTGAAGTCATC | + |
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Preference number: 1 (lower is better) Translates to: PPFHISVLACECART*APNNKTLSHFTEVI Trigger: GATGACTTCAGTGAAGTGACTTAATGTTTTATTGTTGGGAGCTCACGTCCTTGCACACTCGCATGCCAGGACACTGATGTGGAAGGGTGG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000235771.2 |
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| 3UTR TCA 90 bp | ATGTGTGAGAGTTCTGCCTGCACGTGTGTGCATGTACCACCTGTGTaGCATCAGAAGAAGGTTAGCAGATCCACTAGAACGGTTGTGAAC | + |
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Preference number: 1 (lower is better) Translates to: MCESSACTCVHVPPV*HQKKVSRSTRTVVN Trigger: GTTCACAACCGTTCTAGTGGATCTGCTAACCTTCTTCTGATGTCACACAGGTGGTACATGCACACACGTGCAGGCAGAACTCTCACACAT 49% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000235771.2 |
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| 3UTR TCA 90 bp | CTGTGTGACATCAGAAGAAGGTTAGCAGATCCACTAGAACGGTTGTaGACCAACATGGGTGCTGGGAATCGAATCCTAGTCTTATATAAG | + |
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Preference number: 1 (lower is better) Translates to: LCDIRRRLADPLERL*TNMGAGNRILVLYK Trigger: CTTATATAAGACTAGGATTCGATTCCCAGCACCCATGTTGGTTCACAACCGTTCTAGTGGATCTGCTAACCTTCTTCTGATGTCACACAG 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000235771.2 |
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| 3UTR TCA 90 bp | CTTGAAGGGGACTGTAAGAAAGTCTTAAAGGAAGCCAGCATTCTATaGAAGTGTAGAGCTCTCAAAAGCCCAGCATATATTACAACTTTA | + |
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Preference number: 1 (lower is better) Translates to: LEGDCKKVLKEASIL*KCRALKSPAYITTL Trigger: TAAAGTTGTAATATATGCTGGGCTTTTGAGAGCTCTACACTTTCATAGAATGCTGGCTTCCTTTAAGACTTTCTTACAGTCCCCTTCAAG 39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000235771.2 |
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| 3UTR-3UTR TCA 90 bp | TCTCCAGGCTCTAGCATCCCTACCCCTACCCAGGCATGGTGGCACTTGCCTGTAGACTCACAATCACTGTaGTCCTCCTGCTTCACCCTC | + |
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Preference number: 2 (lower is better) Translates to: SPGSSIPTPTQAWWHLPVDSQSL*SSCFTL Trigger: GAGGGTGAAGCAGGAGGATCACAGTGATTGTGAGTC...TACAGGCAAGTGCCACCATGCCTGGGTAGGGGTAGGGATGCTAGAGCCTGGAGA 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000235771.2 |
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| 3UTR-3UTR GCA 90 bp | GTTAGTTTGCCTGGAGCTGAGGTTACAGTTGTAAGACCCTGGCCTGGGAGTGGGCACCCTCCCCAGTGGTaGTGGAGTACAGTAGAAGAC | + |
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Preference number: 2 (lower is better) Translates to: VSLPGAEVTVVRPWPGSGHPPQW*WSTVED Trigger: GTCTTCTACTGTACTCCAGCACCACTGGGGAGGGTG...CCCACTCCCAGGCCAGGGTCTTACAACTGTAACCTCAGCTCCAGGCAAACTAAC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000235771.2 |
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| 3UTR CAA 90 bp | CCCCAGTGGTGCTGGAGTACAGTAGAAGACTCTGCACCCAGATCCTaGGCCACTCTCTCTCTGCACTGTTTTGAGACTAAGTCTTGCTAC | + |
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Preference number: 2 (lower is better) Translates to: PQWCWSTVEDSAPRS*ATLSLHCFETKSCY Trigger: GTAGCAAGACTTAGTCTCAAAACAGTGCAGAGAGAGAGTGGCCAAGGATCTGGGTGCAGAGTCTTCTACTGTACTCCAGCACCACTGGGG 52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000235771.2 |
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| 3UTR-3UTR GCA 90 bp | TCTCCAGGCTCTAGCATCCCTACCCCTACCCAGGCATGGTGGCACTTGCCTGTATTGAGAAAGAGGAATTaGCAAAACTGTGAGGCCAGT | + |
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Preference number: 2 (lower is better) Translates to: SPGSSIPTPTQAWWHLPVLRKRN*QNCEAS Trigger: ACTGGCCTCACAGTTTTGGCAATTCCTCTTTCTCAA...TACAGGCAAGTGCCACCATGCCTGGGTAGGGGTAGGGATGCTAGAGCCTGGAGA 52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000235771.2 |
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| 3UTR CAA 90 bp | GTGGGGTCTGAACTCAGGTCCTCTGTCTTACAGTGTCTGCAGTACTaGATCGTAACCTCTGAGACGTTTCTCCAGGCTCTAGCATCCCTA | + |
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Preference number: 2 (lower is better) Translates to: VGSELRSSVLQCLQY*IVTSETFLQALASL Trigger: TAGGGATGCTAGAGCCTGGAGAAACGTCTCAGAGGTTACGATCAAGTACTGCAGACACTGTAAGACAGAGGACCTGAGTTCAGACCCCAC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000235771.2 |
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| 3UTR-3UTR TCA 90 bp | GTTAGTTTGCCTGGAGCTGAGGTTACAGTTGTAAGACCCTGGCCTGGGAGTGGGAGCATAAGCTGGTCTTaGACTTGTAATCCTTCTGCC | + |
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Preference number: 2 (lower is better) Translates to: VSLPGAEVTVVRPWPGSGSISWS*TCNPSA Trigger: GGCAGAAGGATTACAAGTTCAAGACCAGCTTATGCT...CCCACTCCCAGGCCAGGGTCTTACAACTGTAACCTCAGCTCCAGGCAAACTAAC 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000235771.2 |
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| 3UTR-3UTR GCA 90 bp | AGTTTGCCTGGAGCTGAGGTTACAGTTGTAAGACCCTGGCCTGGGAGTGGGGTCTCTTGGGTTTTGTTTTaGTTGAGTCAGAGCAGACTC | + |
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Preference number: 2 (lower is better) Translates to: SLPGAEVTVVRPWPGSGVSWVLF*LSQSRL Trigger: GAGTCTGCTCTGACTCAAGCAAAACAAAACCCAAGA...GACCCCACTCCCAGGCCAGGGTCTTACAACTGTAACCTCAGCTCCAGGCAAACT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000235771.2 |
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| 3UTR-3UTR CCA 90 bp | TGTCTGCAGTACTTGATCGTAACCTCTGAGACGTTTCTCCAGGCTCTAGCATCCCCTCCCCAGTGGTGCTaGAGTACAGTAGAAGACTCT | + |
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Preference number: 2 (lower is better) Translates to: CLQYLIVTSETFLQALASPPQWC*STVEDS Trigger: AGAGTCTTCTACTGTACTCCAGCACCACTGGGGAGG...GGATGCTAGAGCCTGGAGAAACGTCTCAGAGGTTACGATCAAGTACTGCAGACA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000235771.2 |
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| 3UTR-3UTR GCA 90 bp | TGTTTGTTAATTTTATGTGTGAGAGTTCTGCCTGCACGTGTGTGCATGTACCACCTTCTGCACAGCGGCTaGCACCGCCATTTACTGACT | + |
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Preference number: 2 (lower is better) Translates to: CLLILCVRVLPARVCMYHLLHSG*HRHLLT Trigger: AGTCAGTAAATGGCGGTGGCAGCCGCTGTGCAGAAG...GTGGTACATGCACACACGTGCAGGCAGAACTCTCACACATAAAATTAACAAACA 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000235771.2 |
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| 3UTR-3UTR CCA 90 bp | ACTAGAACGGTTGTGAACCAACATGGGTGCTGGGAATCGAATCCTAGTCTTATAACCAGGAACAAGGCATaGACTGGACTTCACAGTCCC | + |
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Preference number: 2 (lower is better) Translates to: TRTVVNQHGCWESNPSLITRNKA*TGLHSP Trigger: GGGACTGTGAAGTCCAGTCCATGCCTTGTTCCTGGT...TATAAGACTAGGATTCGATTCCCAGCACCCATGTTGGTTCACAACCGTTCTAGT 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000235771.2 |
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| 3UTR-3UTR GCA 90 bp | TGTCTGCAGTACTTGATCGTAACCTCTGAGACGTTTCTCCAGGCTCTAGCATCCGAAAACACTCCCAAGTaGAAAACCATTCTGATGTCA | + |
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Preference number: 2 (lower is better) Translates to: CLQYLIVTSETFLQALASENTPK*KTILMS Trigger: TGACATCAGAATGGTTTTGCACTTGGGAGTGTTTTC...GGATGCTAGAGCCTGGAGAAACGTCTCAGAGGTTACGATCAAGTACTGCAGACA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000235771.2 |
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| 3UTR-3UTR CCA 90 bp | ACTAGAACGGTTGTGAACCAACATGGGTGCTGGGAATCGAATCCTAGTCTTATAAGATGGGCTGGAGTTTaGTCTCAAGAATTTATGGGG | + |
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Preference number: 2 (lower is better) Translates to: TRTVVNQHGCWESNPSLIRWAGV*SQEFMG Trigger: CCCCATAAATTCTTGAGACCAAACTCCAGCCCATCT...TATAAGACTAGGATTCGATTCCCAGCACCCATGTTGGTTCACAACCGTTCTAGT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000235771.2 |
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| 3UTR CAA 90 bp | CTTCAGGCATGGGACTTAACAGGTGAGGTCAGACATTTCAAAATCTaGCCTGTAATTCCAAAACTCAGCAGGTTGAGAAAGAGGAATTGC | + |
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Preference number: 2 (lower is better) Translates to: LQAWDLTGEVRHFKI*PVIPKLSRLRKRNC Trigger: GCAATTCCTCTTTCTCAACCTGCTGAGTTTTGGAATTACAGGCAAGATTTTGAAATGTCTGACCTCACCTGTTAAGTCCCATGCCTGAAG 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000237720.2 |
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| 3UTR CAA 90 bp | CAAGTGCAAAACCATTCTGATGTCATACCTTTCTTGGGTTTTGTTTaGCTTGAGTCAGAGCAGACTCACAATCACTGTGATCCTCCTGCT | + |
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Preference number: 2 (lower is better) Translates to: QVQNHSDVIPFLGFV*LESEQTHNHCDPPA Trigger: AGCAGGAGGATCACAGTGATTGTGAGTCTGCTCTGACTCAAGCAAAACAAAACCCAAGAAAGGTATGACATCAGAATGGTTTTGCACTTG 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000235771.2 |
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| 3UTR-3UTR TCA 90 bp | TTATGGGGATACTACTACCCTCCCAAAATTAAGAGCACCTTTATGTATAACATTGCCACCGCCATTTACTaGCTTCTGGACAGAGAAGAG | + |
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Preference number: 2 (lower is better) Translates to: LWGYYYPPKIKSTFMYNIATAIY*LLDREE Trigger: CTCTTCTCTGTCCAGAAGTCAGTAAATGGCGGTGGC...AATGTTATACATAAAGGTGCTCTTAATTTTGGGAGGGTAGTAGTATCCCCATAA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000235771.2 |
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| 3UTR CAA 90 bp | GATACTACTACCCTCCCAAAATTAAGAGCACCTTTATGTATAACATaGGGCAAAATACTGCTTGTTTACCAGGAACAAGGCATGGACTGG | + |
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Preference number: 2 (lower is better) Translates to: DTTTLPKLRAPLCIT*GKILLVYQEQGMDW Trigger: CCAGTCCATGCCTTGTTCCTGGTAAACAAGCAGTATTTTGCCCAATGTTATACATAAAGGTGCTCTTAATTTTGGGAGGGTAGTAGTATC 41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000235771.2 |
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| 3UTR-3UTR TCA 90 bp | ACTAGAACGGTTGTGAACCAACATGGGTGCTGGGAATCGAATCCTAGTCTTATACAGAACAAAAATAAGTaGGAAAAGCATCAGTCCTCA | + |
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Preference number: 2 (lower is better) Translates to: TRTVVNQHGCWESNPSLIQNKNK*EKHQSS Trigger: TGAGGACTGATGCTTTTCTCACTTATTTTTGTTCTG...TATAAGACTAGGATTCGATTCCCAGCACCCATGTTGGTTCACAACCGTTCTAGT 41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000235771.2 |
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| 3UTR-3UTR CCA 90 bp | TGTTTGTTAATTTTATGTGTGAGAGTTCTGCCTGCACGTGTGTGCATGTACCACTTATATATTAAAGGTTaGTTAGGGTTGGGGCTGAGC | + |
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Preference number: 2 (lower is better) Translates to: CLLILCVRVLPARVCMYHLYIKG*LGLGLS Trigger: GCTCAGCCCCAACCCTAACCAACCTTTAATATATAA...GTGGTACATGCACACACGTGCAGGCAGAACTCTCACACATAAAATTAACAAACA 41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000235771.2 |
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| 3UTR-3UTR CCA 90 bp | TGTTTGTTAATTTTATGTGTGAGAGTTCTGCCTGCACGTGTGTGCATGTACCACAAGATACAATTTTTATaGGGATACTACTACCCTCCC | + |
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Preference number: 2 (lower is better) Translates to: CLLILCVRVLPARVCMYHKIQFL*GYYYPP Trigger: GGGAGGGTAGTAGTATCCCCATAAAAATTGTATCTT...GTGGTACATGCACACACGTGCAGGCAGAACTCTCACACATAAAATTAACAAACA 40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000235771.2 |
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| 3UTR-3UTR GCA 90 bp | TTATGGGGATACTACTACCCTCCCAAAATTAAGAGCACCTTTATGTATAACATTTGGCCACTCTCTCTCTaGACTGTTTTGAGACTAAGT | + |
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Preference number: 2 (lower is better) Translates to: LWGYYYPPKIKSTFMYNIWPLSL*TVLRLS Trigger: ACTTAGTCTCAAAACAGTGCAGAGAGAGAGTGGCCA...AATGTTATACATAAAGGTGCTCTTAATTTTGGGAGGGTAGTAGTATCCCCATAA 39% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000235771.2 |
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| 3UTR-3UTR TCA 90 bp | TTATGGGGATACTACTACCCTCCCAAAATTAAGAGCACCTTTATGTATAACATTCAAAACTCAGCAGGTTaGGAAAGAGGAATTGCCAAA | + |
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Preference number: 2 (lower is better) Translates to: LWGYYYPPKIKSTFMYNIQNSAG*ERGIAK Trigger: TTTGGCAATTCCTCTTTCTCAACCTGCTGAGTTTTG...AATGTTATACATAAAGGTGCTCTTAATTTTGGGAGGGTAGTAGTATCCCCATAA 38% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000235771.2 |
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| 3UTR TCA 72 bp | CAGCTAGGGAGAAGTGAAAGGCCCTGTCCCTGGAGGTaGAAACCTGCTCCTTACAGTTGTCCCCACCCTTCC | + |
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Preference number: 3 (lower is better) Translates to: QLGRSERPCPWR*KPAPYSCPHPS Trigger: GGAAGGGTGGGGACAACTGTAAGGAGCAGGTTTTCACCTCCAGGGACAGGGCCTTTCACTTCTCCCTAGCTG 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000235771.2 |
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| 3UTR TCA 72 bp | CAAGCCTTCTGCACAGCGGCTGCCACCGCCATTTACTaGCTTCTGGACAGAGAAGAGGGCTTGAAGGGGACT | + |
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Preference number: 3 (lower is better) Translates to: QAFCTAAATAIY*LLDREEGLKGT Trigger: AGTCCCCTTCAAGCCCTCTTCTCTGTCCAGAAGTCAGTAAATGGCGGTGGCAGCCGCTGTGCAGAAGGCTTG 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000235771.2 |
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| 3UTR CCA 72 bp | ACTGTGATCCTCCTGCTTCACCCTCCCCAGTGGTGCTaGAGTACAGTAGAAGACTCTGCACCCAGATCCTTG | + |
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Preference number: 3 (lower is better) Translates to: TVILLLHPPQWC*STVEDSAPRSL Trigger: CAAGGATCTGGGTGCAGAGTCTTCTACTGTACTCCAGCACCACTGGGGAGGGTGAAGCAGGAGGATCACAGT 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000235771.2 |
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| 3UTR-3UTR CAA 90 bp | CTTACAGTTGTCCCCACCCTTCCACATCAGTGTCCTGGCATGCGAGTGTGCAAGGGTGGATTTCTGAGTTaGAGGCCAGCCTGGTCTACA | + |
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Preference number: 3 (lower is better) Translates to: LTVVPTLPHQCPGMRVCKGGFLS*RPAWST Trigger: TGTAGACCAGGCTGGCCTCAAACTCAGAAATCCACC...CTTGCACACTCGCATGCCAGGACACTGATGTGGAAGGGTGGGGACAACTGTAAG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000235771.2 |
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| 3UTR GCA 72 bp | TGTCCAGAGACAGAAAAGCCAGCCTGTAAATGTGCATaGCAGCTAGGGAGAAGTGAAAGGCCCTGTCCCTGG | + |
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Preference number: 3 (lower is better) Translates to: CPETEKPACKCA*QLGRSERPCPW Trigger: CCAGGGACAGGGCCTTTCACTTCTCCCTAGCTGGCATGCACATTTACAGGCTGGCTTTTCTGTCTCTGGACA 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000235771.2 |
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| 3UTR-3UTR CAA 90 bp | TCTCCAGGCTCTAGCATCCCTACCCCTACCCAGGCATGGTGGCACTTGCCTGTATCTCTCTGCACTGTTTaGAGACTAAGTCTTGCTACG | + |
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Preference number: 3 (lower is better) Translates to: SPGSSIPTPTQAWWHLPVSLCTV*RLSLAT Trigger: CGTAGCAAGACTTAGTCTCAAAACAGTGCAGAGAGA...TACAGGCAAGTGCCACCATGCCTGGGTAGGGGTAGGGATGCTAGAGCCTGGAGA 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000235771.2 |
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| 3UTR-3UTR CAA 90 bp | GTTAGTTTGCCTGGAGCTGAGGTTACAGTTGTAAGACCCTGGCCTGGGAGTGGGCAGTGTCTGCAGTACTaGATCGTAACCTCTGAGACG | + |
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Preference number: 3 (lower is better) Translates to: VSLPGAEVTVVRPWPGSGQCLQY*IVTSET Trigger: CGTCTCAGAGGTTACGATCAAGTACTGCAGACACTG...CCCACTCCCAGGCCAGGGTCTTACAACTGTAACCTCAGCTCCAGGCAAACTAAC 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000235771.2 |
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| 3UTR TCA 72 bp | GTTACAGTTGTAAGACCCTGGCCTGGGAGTGGGGTCTaGACTCAGGTCCTCTGTCTTACAGTGTCTGCAGTA | + |
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Preference number: 3 (lower is better) Translates to: VTVVRPWPGSGV*TQVLCLTVSAV Trigger: TACTGCAGACACTGTAAGACAGAGGACCTGAGTTCAGACCCCACTCCCAGGCCAGGGTCTTACAACTGTAAC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000235771.2 |
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| 3UTR GCA 72 bp | GAAAAGCATCAGTCCTCAAGCCTTCTGCACAGCGGCTaGCACCGCCATTTACTGACTTCTGGACAGAGAAGA | + |
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Preference number: 3 (lower is better) Translates to: EKHQSSSLLHSG*HRHLLTSGQRR Trigger: TCTTCTCTGTCCAGAAGTCAGTAAATGGCGGTGGCAGCCGCTGTGCAGAAGGCTTGAGGACTGATGCTTTTC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000235771.2 |
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| 3UTR-3UTR CAA 90 bp | TCTCCAGGCTCTAGCATCCCTACCCCTACCCAGGCATGGTGGCACTTGCCTGTAGATGTCATACCTTTCTaGGGTTTTGTTTTGCTTGAG | + |
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Preference number: 3 (lower is better) Translates to: SPGSSIPTPTQAWWHLPVDVIPF*GFVLLE Trigger: CTCAAGCAAAACAAAACCCAAGAAAGGTATGACATC...TACAGGCAAGTGCCACCATGCCTGGGTAGGGGTAGGGATGCTAGAGCCTGGAGA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000235771.2 |
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| 3UTR-3UTR CAA 90 bp | GTTAGTTTGCCTGGAGCTGAGGTTACAGTTGTAAGACCCTGGCCTGGGAGTGGGTTCTTGGGTTTTGTTTaGCTTGAGTCAGAGCAGACT | + |
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Preference number: 3 (lower is better) Translates to: VSLPGAEVTVVRPWPGSGFLGFV*LESEQT Trigger: AGTCTGCTCTGACTCAAGCAAAACAAAACCCAAGAA...CCCACTCCCAGGCCAGGGTCTTACAACTGTAACCTCAGCTCCAGGCAAACTAAC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000235771.2 |
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| 3UTR TCA 72 bp | AGTTCTGCCTGCACGTGTGTGCATGTACCACCTGTGTaGCATCAGAAGAAGGTTAGCAGATCCACTAGAACG | + |
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Preference number: 3 (lower is better) Translates to: SSACTCVHVPPV*HQKKVSRSTRT Trigger: CGTTCTAGTGGATCTGCTAACCTTCTTCTGATGTCACACAGGTGGTACATGCACACACGTGCAGGCAGAACT 50% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000235771.2 |
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| 3UTR-3UTR CAA 90 bp | ACTAGAACGGTTGTGAACCAACATGGGTGCTGGGAATCGAATCCTAGTCTTATAACCTGCTCCTTACAGTaGTCCCCACCCTTCCACATC | + |
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Preference number: 3 (lower is better) Translates to: TRTVVNQHGCWESNPSLITCSLQ*SPPFHI Trigger: GATGTGGAAGGGTGGGGACAACTGTAAGGAGCAGGT...TATAAGACTAGGATTCGATTCCCAGCACCCATGTTGGTTCACAACCGTTCTAGT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000235771.2 |
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| 3UTR TCA 72 bp | ATCAGAAGAAGGTTAGCAGATCCACTAGAACGGTTGTaGACCAACATGGGTGCTGGGAATCGAATCCTAGTC | + |
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Preference number: 3 (lower is better) Translates to: IRRRLADPLERL*TNMGAGNRILV Trigger: GACTAGGATTCGATTCCCAGCACCCATGTTGGTTCACAACCGTTCTAGTGGATCTGCTAACCTTCTTCTGAT 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000235771.2 |
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| 3UTR-3UTR CAA 90 bp | TGTTTGTTAATTTTATGTGTGAGAGTTCTGCCTGCACGTGTGTGCATGTACCACCCAAAACTCAGCAGGTaGAGAAAGAGGAATTGCCAA | + |
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Preference number: 3 (lower is better) Translates to: CLLILCVRVLPARVCMYHPKLSR*RKRNCQ Trigger: TTGGCAATTCCTCTTTCTCAACCTGCTGAGTTTTGG...GTGGTACATGCACACACGTGCAGGCAGAACTCTCACACATAAAATTAACAAACA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000235771.2 |
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| 3UTR-3UTR CAA 90 bp | TCCCATAATCCTTTGGGAAAGCACTTAACCCCAAGAAAACACTCCCAAGTGCAATACCTTTCTTGGGTTTaGTTTTGCTTGAGTCAGAGC | + |
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Preference number: 3 (lower is better) Translates to: SHNPLGKHLTPRKHSQVQYLSWV*FCLSQS Trigger: GCTCTGACTCAAGCAAAACAAAACCCAAGAAAGGTA...TTGCACTTGGGAGTGTTTTCTTGGGGTTAAGTGCTTTCCCAAAGGATTATGGGA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000235771.2 |
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| 3UTR GCA 72 bp | TTAATTTTATGTGTGAGAGTTCTGCCTGCACGTGTGTaGATGTACCACCTGTGTGACATCAGAAGAAGGTTA | + |
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Preference number: 3 (lower is better) Translates to: LILCVRVLPARV*MYHLCDIRRRL Trigger: TAACCTTCTTCTGATGTCACACAGGTGGTACATGCACACACGTGCAGGCAGAACTCTCACACATAAAATTAA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000235771.2 |
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| 3UTR-3UTR CAA 90 bp | TTATGGGGATACTACTACCCTCCCAAAATTAAGAGCACCTTTATGTATAACATTTGGGTTTTGTTTTGCTaGAGTCAGAGCAGACTCACA | + |
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Preference number: 3 (lower is better) Translates to: LWGYYYPPKIKSTFMYNIWVLFC*SQSRLT Trigger: TGTGAGTCTGCTCTGACTCAAGCAAAACAAAACCCA...AATGTTATACATAAAGGTGCTCTTAATTTTGGGAGGGTAGTAGTATCCCCATAA 39% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt. Matches the following 1 transcripts: ENSMUST00000235771.2 |
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| 3UTR TCA 72 bp | AACACACTAATTTATCAAAAATCAGTCTACTCTGGCTaGGGTAAAAGATATATACCCTCTTACAAAGCAAGG | + |
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Preference number: 3 (lower is better) Translates to: NTLIYQKSVYSG*GKRYIPSYKAR Trigger: CCTTGCTTTGTAAGAGGGTATATATCTTTTACCTCAGCCAGAGTAGACTGATTTTTGATAAATTAGTGTGTT 35% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000235771.2 |
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| 3UTR CAA 72 bp | GAACTCAGGTCCTCTGTCTTACAGTGTCTGCAGTACTaGATCGTAACCTCTGAGACGTTTCTCCAGGCTCTA | + |
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Preference number: 4 (lower is better) Translates to: ELRSSVLQCLQY*IVTSETFLQAL Trigger: TAGAGCCTGGAGAAACGTCTCAGAGGTTACGATCAAGTACTGCAGACACTGTAAGACAGAGGACCTGAGTTC 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000235771.2 |
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| 3UTR CAA 72 bp | TGGTGGCACTTGCCTGTAATTCCAAAACTCAGCAGGTaGAGAAAGAGGAATTGCCAAAACTGTGAGGCCAGT | + |
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Preference number: 4 (lower is better) Translates to: WWHLPVIPKLSR*RKRNCQNCEAS Trigger: ACTGGCCTCACAGTTTTGGCAATTCCTCTTTCTCAACCTGCTGAGTTTTGGAATTACAGGCAAGTGCCACCA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000235771.2 |
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| 3UTR CAA 72 bp | TGGGACTTAACAGGTGAGGTCAGACATTTCAAAATCTaGCCTGTAATTCCAAAACTCAGCAGGTTGAGAAAG | + |
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Preference number: 4 (lower is better) Translates to: WDLTGEVRHFKI*PVIPKLSRLRK Trigger: CTTTCTCAACCTGCTGAGTTTTGGAATTACAGGCAAGATTTTGAAATGTCTGACCTCACCTGTTAAGTCCCA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000237720.2 |
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| 3UTR CAA 72 bp | TGCAAAACCATTCTGATGTCATACCTTTCTTGGGTTTaGTTTTGCTTGAGTCAGAGCAGACTCACAATCACT | + |
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Preference number: 4 (lower is better) Translates to: CKTILMSYLSWV*FCLSQSRLTIT Trigger: AGTGATTGTGAGTCTGCTCTGACTCAAGCAAAACAAAACCCAAGAAAGGTATGACATCAGAATGGTTTTGCA 40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000235771.2 |
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| CDS-3UTR CAA 90 bp | CTTACAGTTGTCCCCACCCTTCCACATCAGTGTCCTGGCATGCGAGTGTGCAAGTTCTTAGGCCTTAACTaGAAGTATAAGACCAGCAAA | + |
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Preference number: 5 (lower is better) Translates to: LTVVPTLPHQCPGMRVCKFLGLN*KYKTSK Trigger: TTTGCTGGTCTTATACTTCAAGTTAAGGCCTAAGAA...CTTGCACACTCGCATGCCAGGACACTGATGTGGAAGGGTGGGGACAACTGTAAG 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000235771.2 |
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| CDS-3UTR CAA 90 bp | AGCCCTGCTGTCAGAATGACTAAGAACACATTTGAAGTGGCAGCTCCTCACCATTTCTTAGGCCTTAACTaGAAGTATAAGACCAGCAAA | + |
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Preference number: 5 (lower is better) Translates to: SPAVRMTKNTFEVAAPHHFLGLN*KYKTSK Trigger: TTTGCTGGTCTTATACTTCAAGTTAAGGCCTAAGAA...ATGGTGAGGAGCTGCCACTTCAAATGTGTTCTTAGTCATTCTGACAGCAGGGCT 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000235771.2 ENSMUST00000236170.2 |
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| CDS-3UTR CAA 90 bp | GGTGAGGTCAGACATTTCAAAATCTTGCCTGTAATTCCAAAACTCAGCAGGTTGTTCTTAGGCCTTAACTaGAAGTATAAGACCAGCAAA | + |
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Preference number: 5 (lower is better) Translates to: GEVRHFKILPVIPKLSRLFLGLN*KYKTSK Trigger: TTTGCTGGTCTTATACTTCAAGTTAAGGCCTAAGAA...CAACCTGCTGAGTTTTGGAATTACAGGCAAGATTTTGAAATGTCTGACCTCACC 40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000237720.2 |
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