RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for ATP5G1 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000006057

Ensembl transcript IDs: ENSMUST00000090541.12, ENSMUST00000107684.2, ENSMUST00000107686.8, ENSMUST00000178611.8

Found 127 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR CCA 90 bp AACAATAGGGGGCGCATGCCTTTAACCCCAGCTTCACAGCTAATCTaGTCTATAGTAAGTCCCAGGCCAGCCAGAGCCACACAGCATGGC +
Preference number: 1 (lower is better)
Translates to: NNRGRMPLTPASQLI*SIVSPRPARATQHG
Trigger: GCCATGCTGTGTGGCTCTGGCTGGCCTGGGACTTACTATAGACCAGATTAGCTGTGAAGCTGGGGTTAAAGGCATGCGCCCCCTATTGTT
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000090541.12
ENSMUST00000178611.8
3UTR GCA 90 bp GCTATTTCATATCCTCCTGGGAGACGGTGGGACCCTTCCACACTCTaGCTTATCACCAAGGCTGACCCAAGTGTCACTTCTCACCATTCC +
Preference number: 1 (lower is better)
Translates to: AISYPPGRRWDPSTL*LITKADPSVTSHHS
Trigger: GGAATGGTGAGAAGTGACACTTGGGTCAGCCTTGGTGATAAGGCAGAGTGTGGAAGGGTCCCACCGTCTCCCAGGAGGATATGAAATAGC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000090541.12
ENSMUST00000178611.8
3UTR TCA 90 bp GCTGGGAGATGGTTCCAGTGGGATAAAGGGCTTGCTGCCCACACATaGGGGTCTGAGTTTGGATATCCAGTAAAAGCTAGGTGTGAGAGG +
Preference number: 1 (lower is better)
Translates to: AGRWFQWDKGLAAHT*GSEFGYPVKARCER
Trigger: CCTCTCACACCTAGCTTTTACTGGATATCCAAACTCAGACCCTCATGTGTGGGCAGCAAGCCCTTTATCCCACTGGAACCATCTCCCAGC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000090541.12
ENSMUST00000178611.8
3UTR CCA 90 bp ACCAACATCATTACCCAGGCTATTTCATATCCTCCTGGGAGACGGTaGGACCCTTCCACACTCTGCCTTATCACCAAGGCTGACCCAAGT +
Preference number: 1 (lower is better)
Translates to: TNIITQAISYPPGRR*DPSTLCLITKADPS
Trigger: ACTTGGGTCAGCCTTGGTGATAAGGCAGAGTGTGGAAGGGTCCCACCGTCTCCCAGGAGGATATGAAATAGCCTGGGTAATGATGTTGGT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000090541.12
ENSMUST00000178611.8
3UTR TCA 90 bp TCCACAGGAAGGAAAAAGCAACTACTTTCCCTGGGGAGTGTTCCTTaGTTACCTCCAGAGCAAGTGACCTGTCAAAGGTGCCAGCGTCAT +
Preference number: 1 (lower is better)
Translates to: STGRKKQLLSLGSVP*LPPEQVTCQRCQRH
Trigger: ATGACGCTGGCACCTTTGACAGGTCACTTGCTCTGGAGGTAATCAAGGAACACTCCCCAGGGAAAGTAGTTGCTTTTTCCTTCCTGTGGA
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000090541.12
ENSMUST00000178611.8
3UTR CCA 90 bp ATCGGATCCCCATTTACAGATGGTTGTGAGCCACCATGTGGTTGCTaGGAATTGAACTCAGGACCTCTGGAAGAGCAGTCAGTGCTCTTA +
Preference number: 1 (lower is better)
Translates to: IGSPFTDGCEPPCGC*ELNSGPLEEQSVLL
Trigger: TAAGAGCACTGACTGCTCTTCCAGAGGTCCTGAGTTCAATTCCCAGCAACCACATGGTGGCTCACAACCATCTGTAAATGGGGATCCGAT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000090541.12
ENSMUST00000178611.8
3UTR CCA 90 bp TACTTTAAATTGTGGGGCATGAATAAAAACAGGACTGAGGGCGAGTaGGAGCAATGGCTGTGTGACACCTTTAAACTCACGCTGACTCCC +
Preference number: 1 (lower is better)
Translates to: YFKLWGMNKNRTEGE*EQWLCDTFKLTLTP
Trigger: GGGAGTCAGCGTGAGTTTAAAGGTGTCACACAGCCATTGCTCCCACTCGCCCTCAGTCCTGTTTTTATTCATGCCCCACAATTTAAAGTA
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000090541.12
ENSMUST00000178611.8
3UTR CCA 90 bp GCAAGTGACCTGTCAAAGGTGCCAGCGTCATATCCCCAAGGGTTATaGTGTTCCGCTTGTGTAACAGCATTACCAGTTAATCTATTGCTC +
Preference number: 1 (lower is better)
Translates to: ASDLSKVPASYPQGL*CSACVTALPVNLLL
Trigger: GAGCAATAGATTAACTGGTAATGCTGTTACACAAGCGGAACACCATAACCCTTGGGGATATGACGCTGGCACCTTTGACAGGTCACTTGC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000090541.12
ENSMUST00000178611.8
3UTR TCA 90 bp AATGACTACTGCTCCCTGAACAGAAACAGCCCTCAAGACAACTACTaGAACTGCCGTGTAGGGATAATCTCTTATGTGCTGTGTGGAAGC +
Preference number: 1 (lower is better)
Translates to: NDYCSLNRNSPQDNY*NCRVGIISYVLCGS
Trigger: GCTTCCACACAGCACATAAGAGATTATCCCTACACGGCAGTTTCAGTAGTTGTCTTGAGGGCTGTTTCTGTTCAGGGAGCAGTAGTCATT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000090541.12
ENSMUST00000178611.8
3UTR GCA 90 bp GCAGAGTCAATGTCAAGTGGACCTGGGTTGGAAATAGAGGCTTGCTaGAGGTCATTCAACATAGTCTTGATGAGTCAGCACAGTGATAAG +
Preference number: 1 (lower is better)
Translates to: AESMSSGPGLEIEAC*RSFNIVLMSQHSDK
Trigger: CTTATCACTGTGCTGACTCATCAAGACTATGTTGAATGACCTGCAGCAAGCCTCTATTTCCAACCCAGGTCCACTTGACATTGACTCTGC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000090541.12
ENSMUST00000178611.8
3UTR TCA 90 bp AATCTCTTATGTGCTGTGTGGAAGCATCACCTGTCAATAAAGAGTTaGTGGCCTATTAGCAAAAGGTGGGAAGTAATAGGTAGAAGATCC +
Preference number: 1 (lower is better)
Translates to: NLLCAVWKHHLSIKS*WPISKRWEVIGRRS
Trigger: GGATCTTCTACCTATTACTTCCCACCTTTTGCTAATAGGCCATCAACTCTTTATTGACAGGTGATGCTTCCACACAGCACATAAGAGATT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000090541.12
ENSMUST00000178611.8
3UTR-3UTR CCA 90 bp CAGTGTCATTTTAGCCAAATGAGGGCGAAGGGAGGTCTTGGCACAGGCCACAGACCTCCTGGGAGACGGTaGGACCCTTCCACACTCTGC +
Preference number: 2 (lower is better)
Translates to: QCHFSQMRAKGGLGTGHRPPGRR*DPSTLC
Trigger: GCAGAGTGTGGAAGGGTCCCACCGTCTCCCAGGAGG...TCTGTGGCCTGTGCCAAGACCTCCCTTCGCCCTCATTTGGCTAAAATGACACTG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000090541.12
ENSMUST00000178611.8
3UTR-3UTR CCA 90 bp CTCAGAACTGTCACTCCAGTTCCAGGAGATATGACACCCTCAGAGACATATATGCCTCCTGGGAGACGGTaGGACCCTTCCACACTCTGC +
Preference number: 2 (lower is better)
Translates to: LRTVTPVPGDMTPSETYMPPGRR*DPSTLC
Trigger: GCAGAGTGTGGAAGGGTCCCACCGTCTCCCAGGAGG...CATATATGTCTCTGAGGGTGTCATATCTCCTGGAACTGGAGTGACAGTTCTGAG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000090541.12
ENSMUST00000178611.8
3UTR-3UTR TCA 90 bp GATTTCATTATGGATGGTTGTGAGCCACCATGTGGTTGCTGGGATTTGAACTCGGGCGCTCTTAACCACTaGGCCAACTCGCCAGCCCTT +
Preference number: 2 (lower is better)
Translates to: DFIMDGCEPPCGCWDLNSGALNH*ANSPAL
Trigger: AAGGGCTGGCGAGTTGGCTCAGTGGTTAAGAGCGCC...CGAGTTCAAATCCCAGCAACCACATGGTGGCTCACAACCATCCATAATGAAATC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000090541.12
ENSMUST00000178611.8
3UTR-3UTR CCA 90 bp CAGTGTCATTTTAGCCAAATGAGGGCGAAGGGAGGTCTTGGCACAGGCCACAGATATTTCATATCCTCCTaGGAGACGGTGGGACCCTTC +
Preference number: 2 (lower is better)
Translates to: QCHFSQMRAKGGLGTGHRYFISS*ETVGPF
Trigger: GAAGGGTCCCACCGTCTCCCAGGAGGATATGAAATA...TCTGTGGCCTGTGCCAAGACCTCCCTTCGCCCTCATTTGGCTAAAATGACACTG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000090541.12
ENSMUST00000178611.8
3UTR-3UTR CCA 90 bp GATTTCATTATGGATGGTTGTGAGCCACCATGTGGTTGCTGGGATTTGAACTCGAGGACTGAGGGCGAGTaGGAGCAATGGCTGTGTGAC +
Preference number: 2 (lower is better)
Translates to: DFIMDGCEPPCGCWDLNSRTEGE*EQWLCD
Trigger: GTCACACAGCCATTGCTCCCACTCGCCCTCAGTCCT...CGAGTTCAAATCCCAGCAACCACATGGTGGCTCACAACCATCCATAATGAAATC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000090541.12
ENSMUST00000178611.8
3UTR CAA 90 bp GATTTCATTATGGATGGTTGTGAGCCACCATGTGGTTGCTGGGATTaGAACTCGGGACCTTCAGAAGAGCAGTCGGCGCTCTTAACCACT +
Preference number: 2 (lower is better)
Translates to: DFIMDGCEPPCGCWD*NSGPSEEQSALLTT
Trigger: AGTGGTTAAGAGCGCCGACTGCTCTTCTGAAGGTCCCGAGTTCAAATCCCAGCAACCACATGGTGGCTCACAACCATCCATAATGAAATC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000090541.12
ENSMUST00000178611.8
3UTR-3UTR CCA 90 bp GATTTCATTATGGATGGTTGTGAGCCACCATGTGGTTGCTGGGATTTGAACTCGGGCGAAGGGAGGTCTTaGCACAGGCCACAGAAAAAG +
Preference number: 2 (lower is better)
Translates to: DFIMDGCEPPCGCWDLNSGEGRS*HRPQKK
Trigger: CTTTTTCTGTGGCCTGTGCCAAGACCTCCCTTCGCC...CGAGTTCAAATCCCAGCAACCACATGGTGGCTCACAACCATCCATAATGAAATC
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000090541.12
ENSMUST00000178611.8
3UTR-3UTR TCA 90 bp TTGTTACAATCATCAAGAATCAGTCTCATCCCCACTGTAGGGATGAAGAAGTCCCCTTTAAACTCACGCTaGCTCCCCTTCCCCGCTCAG +
Preference number: 2 (lower is better)
Translates to: LLQSSRISLIPTVGMKKSPLNSR*LPFPAQ
Trigger: CTGAGCGGGGAAGGGGAGTCAGCGTGAGTTTAAAGG...GGACTTCTTCATCCCTACAGTGGGGATGAGACTGATTCTTGATGATTGTAACAA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 2 transcripts:
ENSMUST00000090541.12
ENSMUST00000178611.8
3UTR-3UTR TCA 90 bp CTGCTTGAAACTCCAACACCAGAGGATGTAACACTTCTGACCTCACACACACACATGACTACTGCTCCCTaGACAGAAACAGCCCTCAAG +
Preference number: 2 (lower is better)
Translates to: LLETPTPEDVTLLTSHTHMTTAP*TETALK
Trigger: CTTGAGGGCTGTTTCTGTTCAGGGAGCAGTAGTCAT...GTGTGTGTGTGAGGTCAGAAGTGTTACATCCTCTGGTGTTGGAGTTTCAAGCAG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000090541.12
ENSMUST00000178611.8
3UTR-3UTR TCA 90 bp GATTTCATTATGGATGGTTGTGAGCCACCATGTGGTTGCTGGGATTTGAACTCGGTCCCCAGCAGCATGTaGAACTGGGCACACAAATGT +
Preference number: 2 (lower is better)
Translates to: DFIMDGCEPPCGCWDLNSVPSSM*NWAHKC
Trigger: ACATTTGTGTGCCCAGTTTCACATGCTGCTGGGGAC...CGAGTTCAAATCCCAGCAACCACATGGTGGCTCACAACCATCCATAATGAAATC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000090541.12
ENSMUST00000178611.8
3UTR-3UTR GCA 90 bp AAGTGGACCTGGGTTGGAAATAGAGGCTTGCTGCAGGTCATTCAACATAGTCTTCCCCGCTCAGGGTTTTaGACAAACTCTCCTAAGCAC +
Preference number: 2 (lower is better)
Translates to: KWTWVGNRGLLQVIQHSLPRSGF*TNSPKH
Trigger: GTGCTTAGGAGAGTTTGTGCAAAACCCTGAGCGGGG...AAGACTATGTTGAATGACCTGCAGCAAGCCTCTATTTCCAACCCAGGTCCACTT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000090541.12
ENSMUST00000178611.8
3UTR-3UTR GCA 90 bp AGCCAAATGAGGGCGAAGGGAGGTCTTGGCACAGGCCACAGAAAAAGAAGCTTCCAGAGCCATCTTGACTaGTTGACACCTCTATCTTTA +
Preference number: 2 (lower is better)
Translates to: SQMRAKGGLGTGHRKRSFQSHLD*LTPLSL
Trigger: TAAAGATAGAGGTGTCAAGCAGTCAAGATGGCTCTG...GAAGCTTCTTTTTCTGTGGCCTGTGCCAAGACCTCCCTTCGCCCTCATTTGGCT
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000090541.12
ENSMUST00000178611.8
3UTR-3UTR GCA 90 bp TCAAGACAACTACTGAAACTGCCGTGTAGGGATAATCTCTTATGTGCTGTGTGGGCCTTCTGGCCTGAGTaGCTGCACGGACATACAATC +
Preference number: 2 (lower is better)
Translates to: SRQLLKLPCRDNLLCAVWAFWPE*LHGHTI
Trigger: GATTGTATGTCCGTGCAGGCACTCAGGCCAGAAGGC...CCACACAGCACATAAGAGATTATCCCTACACGGCAGTTTCAGTAGTTGTCTTGA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000090541.12
ENSMUST00000178611.8
3UTR-3UTR CCA 90 bp TCAAGACAACTACTGAAACTGCCGTGTAGGGATAATCTCTTATGTGCTGTGTGGGGCGAAGGGAGGTCTTaGCACAGGCCACAGAAAAAG +
Preference number: 2 (lower is better)
Translates to: SRQLLKLPCRDNLLCAVWGEGRS*HRPQKK
Trigger: CTTTTTCTGTGGCCTGTGCCAAGACCTCCCTTCGCC...CCACACAGCACATAAGAGATTATCCCTACACGGCAGTTTCAGTAGTTGTCTTGA
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000090541.12
ENSMUST00000178611.8
3UTR-3UTR CCA 90 bp GATTTCATTATGGATGGTTGTGAGCCACCATGTGGTTGCTGGGATTTGAACTCGATTCACTTGGTTGAATaGCTGCCCTGGTCCCCAGCA +
Preference number: 2 (lower is better)
Translates to: DFIMDGCEPPCGCWDLNSIHLVE*LPWSPA
Trigger: TGCTGGGGACCAGGGCAGCCATTCAACCAAGTGAAT...CGAGTTCAAATCCCAGCAACCACATGGTGGCTCACAACCATCCATAATGAAATC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000090541.12
ENSMUST00000178611.8
3UTR-3UTR TCA 90 bp GATTTCATTATGGATGGTTGTGAGCCACCATGTGGTTGCTGGGATTTGAACTCGCCTTATCACCAAGGCTaGCCCAAGTGTCACTTCTCA +
Preference number: 2 (lower is better)
Translates to: DFIMDGCEPPCGCWDLNSPYHQG*PKCHFS
Trigger: TGAGAAGTGACACTTGGGTCAGCCTTGGTGATAAGG...CGAGTTCAAATCCCAGCAACCACATGGTGGCTCACAACCATCCATAATGAAATC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000090541.12
ENSMUST00000178611.8
3UTR-3UTR TCA 90 bp AAGTGGACCTGGGTTGGAAATAGAGGCTTGCTGCAGGTCATTCAACATAGTCTTGTCATTTTAGCCAAATaGGGGCGAAGGGAGGTCTTG +
Preference number: 2 (lower is better)
Translates to: KWTWVGNRGLLQVIQHSLVILAK*GRREVL
Trigger: CAAGACCTCCCTTCGCCCTCATTTGGCTAAAATGAC...AAGACTATGTTGAATGACCTGCAGCAAGCCTCTATTTCCAACCCAGGTCCACTT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000090541.12
ENSMUST00000178611.8
3UTR-3UTR TCA 90 bp CTGCTTGAAACTCCAACACCAGAGGATGTAACACTTCTGACCTCACACACACACTTCTGGGAGTTAGGCTaGGGAAGATGGACATGTGAA +
Preference number: 2 (lower is better)
Translates to: LLETPTPEDVTLLTSHTHFWELG*GRWTCE
Trigger: TTCACATGTCCATCTTCCTCAGCCTAACTCCCAGAA...GTGTGTGTGTGAGGTCAGAAGTGTTACATCCTCTGGTGTTGGAGTTTCAAGCAG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000090541.12
ENSMUST00000178611.8
3UTR-3UTR GCA 90 bp TCAAGACAACTACTGAAACTGCCGTGTAGGGATAATCTCTTATGTGCTGTGTGGCCCCGCTCAGGGTTTTaGACAAACTCTCCTAAGCAC +
Preference number: 2 (lower is better)
Translates to: SRQLLKLPCRDNLLCAVWPRSGF*TNSPKH
Trigger: GTGCTTAGGAGAGTTTGTGCAAAACCCTGAGCGGGG...CCACACAGCACATAAGAGATTATCCCTACACGGCAGTTTCAGTAGTTGTCTTGA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000090541.12
ENSMUST00000178611.8
3UTR-3UTR CCA 90 bp CTGCTTGAAACTCCAACACCAGAGGATGTAACACTTCTGACCTCACACACACACGAGGGCGTCTGTCTCTaGTTGATATCTAGAGGCTAT +
Preference number: 2 (lower is better)
Translates to: LLETPTPEDVTLLTSHTHEGVCL*LISRGY
Trigger: ATAGCCTCTAGATATCAACCAGAGACAGACGCCCTC...GTGTGTGTGTGAGGTCAGAAGTGTTACATCCTCTGGTGTTGGAGTTTCAAGCAG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000090541.12
ENSMUST00000178611.8
3UTR-3UTR CCA 90 bp GATTTCATTATGGATGGTTGTGAGCCACCATGTGGTTGCTGGGATTTGAACTCGAGTCTCTCAGGTTCCTaGCCTTCCACAGGAAGGAAA +
Preference number: 2 (lower is better)
Translates to: DFIMDGCEPPCGCWDLNSSLSGS*PSTGRK
Trigger: TTTCCTTCCTGTGGAAGGCCAGGAACCTGAGAGACT...CGAGTTCAAATCCCAGCAACCACATGGTGGCTCACAACCATCCATAATGAAATC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000090541.12
ENSMUST00000178611.8
3UTR-3UTR GCA 90 bp AAATATTTAATTTATGAGCTGGGAGATGGTTCCAGTGGGATAAAGGGCTTGCTGTCTGGCCTGAGTGCCTaGACGGACATACAATCCCTC +
Preference number: 2 (lower is better)
Translates to: KYLIYELGDGSSGIKGLLSGLSA*TDIQSL
Trigger: GAGGGATTGTATGTCCGTGCAGGCACTCAGGCCAGA...CAGCAAGCCCTTTATCCCACTGGAACCATCTCCCAGCTCATAAATTAAATATTT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000090541.12
ENSMUST00000178611.8
3UTR-3UTR CCA 90 bp GATTTCATTATGGATGGTTGTGAGCCACCATGTGGTTGCTGGGATTTGAACTCGATTAAGAGCTCATACTaGGGCTGCAGAGATGGCTCA +
Preference number: 2 (lower is better)
Translates to: DFIMDGCEPPCGCWDLNSIKSSY*GCRDGS
Trigger: TGAGCCATCTCTGCAGCCCCAGTATGAGCTCTTAAT...CGAGTTCAAATCCCAGCAACCACATGGTGGCTCACAACCATCCATAATGAAATC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000090541.12
ENSMUST00000178611.8
3UTR-3UTR GCA 90 bp CTGCTTGAAACTCCAACACCAGAGGATGTAACACTTCTGACCTCACACACACACCAGAGCCATCTTGACTaGTTGACACCTCTATCTTTA +
Preference number: 2 (lower is better)
Translates to: LLETPTPEDVTLLTSHTHQSHLD*LTPLSL
Trigger: TAAAGATAGAGGTGTCAAGCAGTCAAGATGGCTCTG...GTGTGTGTGTGAGGTCAGAAGTGTTACATCCTCTGGTGTTGGAGTTTCAAGCAG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000090541.12
ENSMUST00000178611.8
3UTR-3UTR CCA 90 bp TTGTTACAATCATCAAGAATCAGTCTCATCCCCACTGTAGGGATGAAGAAGTCCTATTTCATATCCTCCTaGGAGACGGTGGGACCCTTC +
Preference number: 2 (lower is better)
Translates to: LLQSSRISLIPTVGMKKSYFISS*ETVGPF
Trigger: GAAGGGTCCCACCGTCTCCCAGGAGGATATGAAATA...GGACTTCTTCATCCCTACAGTGGGGATGAGACTGATTCTTGATGATTGTAACAA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000090541.12
ENSMUST00000178611.8
3UTR-3UTR TCA 90 bp TTGTTACAATCATCAAGAATCAGTCTCATCCCCACTGTAGGGATGAAGAAGTCCTTCTGGGAGTTAGGCTaGGGAAGATGGACATGTGAA +
Preference number: 2 (lower is better)
Translates to: LLQSSRISLIPTVGMKKSFWELG*GRWTCE
Trigger: TTCACATGTCCATCTTCCTCAGCCTAACTCCCAGAA...GGACTTCTTCATCCCTACAGTGGGGATGAGACTGATTCTTGATGATTGTAACAA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000090541.12
ENSMUST00000178611.8
3UTR-3UTR TCA 90 bp CTGCTTGAAACTCCAACACCAGAGGATGTAACACTTCTGACCTCACACACACACCTGTCAATAAAGAGTTaGTGGCCTATTAGCAAAAGG +
Preference number: 2 (lower is better)
Translates to: LLETPTPEDVTLLTSHTHLSIKS*WPISKR
Trigger: CCTTTTGCTAATAGGCCATCAACTCTTTATTGACAG...GTGTGTGTGTGAGGTCAGAAGTGTTACATCCTCTGGTGTTGGAGTTTCAAGCAG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000090541.12
ENSMUST00000178611.8
3UTR-3UTR GCA 90 bp GATTTCATTATGGATGGTTGTGAGCCACCATGTGGTTGCTGGGATTTGAACTCGATATGGCCTCATCCATaGACCAGAGCTAATATGTCA +
Preference number: 2 (lower is better)
Translates to: DFIMDGCEPPCGCWDLNSIWPHP*TRANMS
Trigger: TGACATATTAGCTCTGGTGCATGGATGAGGCCATAT...CGAGTTCAAATCCCAGCAACCACATGGTGGCTCACAACCATCCATAATGAAATC
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000090541.12
ENSMUST00000178611.8
3UTR-3UTR CCA 90 bp CTGCTTGAAACTCCAACACCAGAGGATGTAACACTTCTGACCTCACACACACACGGGTTATTTGGAAACTaGGGTGTTAGGGTTATACTA +
Preference number: 2 (lower is better)
Translates to: LLETPTPEDVTLLTSHTHGLFGN*GVRVIL
Trigger: TAGTATAACCCTAACACCCCAGTTTCCAAATAACCC...GTGTGTGTGTGAGGTCAGAAGTGTTACATCCTCTGGTGTTGGAGTTTCAAGCAG
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000090541.12
ENSMUST00000178611.8
3UTR-3UTR TCA 90 bp AAGTGGACCTGGGTTGGAAATAGAGGCTTGCTGCAGGTCATTCAACATAGTCTTTTAAATTGTGGGGCATaGATAAAAACAGGACTGAGG +
Preference number: 2 (lower is better)
Translates to: KWTWVGNRGLLQVIQHSLLNCGA*IKTGLR
Trigger: CCTCAGTCCTGTTTTTATTCATGCCCCACAATTTAA...AAGACTATGTTGAATGACCTGCAGCAAGCCTCTATTTCCAACCCAGGTCCACTT
43% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000090541.12
ENSMUST00000178611.8
3UTR-3UTR TCA 90 bp GATTTCATTATGGATGGTTGTGAGCCACCATGTGGTTGCTGGGATTTGAACTCGTATATTCAGTTTTGTTaGCAGTGTTTGAAGCCTGGC +
Preference number: 2 (lower is better)
Translates to: DFIMDGCEPPCGCWDLNSYIQFC*QCLKPG
Trigger: GCCAGGCTTCAAACACTGTCAACAAAACTGAATATA...CGAGTTCAAATCCCAGCAACCACATGGTGGCTCACAACCATCCATAATGAAATC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000090541.12
ENSMUST00000178611.8
3UTR-3UTR GCA 90 bp GATTTCATTATGGATGGTTGTGAGCCACCATGTGGTTGCTGGGATTTGAACTCGTTGGAAATAGAGGCTTaGTGCAGGTCATTCAACATA +
Preference number: 2 (lower is better)
Translates to: DFIMDGCEPPCGCWDLNSLEIEA*CRSFNI
Trigger: TATGTTGAATGACCTGCAGCAAGCCTCTATTTCCAA...CGAGTTCAAATCCCAGCAACCACATGGTGGCTCACAACCATCCATAATGAAATC
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000090541.12
ENSMUST00000178611.8
3UTR-3UTR CCA 90 bp AAATATTTAATTTATGAGCTGGGAGATGGTTCCAGTGGGATAAAGGGCTTGCTGATTAAGAGCTCATACTaGGGCTGCAGAGATGGCTCA +
Preference number: 2 (lower is better)
Translates to: KYLIYELGDGSSGIKGLLIKSSY*GCRDGS
Trigger: TGAGCCATCTCTGCAGCCCCAGTATGAGCTCTTAAT...CAGCAAGCCCTTTATCCCACTGGAACCATCTCCCAGCTCATAAATTAAATATTT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000090541.12
ENSMUST00000178611.8
3UTR-3UTR CCA 90 bp TTGTTACAATCATCAAGAATCAGTCTCATCCCCACTGTAGGGATGAAGAAGTCCAATGTCAAGTGGACCTaGGTTGGAAATAGAGGCTTG +
Preference number: 2 (lower is better)
Translates to: LLQSSRISLIPTVGMKKSNVKWT*VGNRGL
Trigger: CAAGCCTCTATTTCCAACCCAGGTCCACTTGACATT...GGACTTCTTCATCCCTACAGTGGGGATGAGACTGATTCTTGATGATTGTAACAA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000090541.12
ENSMUST00000178611.8
3UTR-3UTR TCA 90 bp TCAAGACAACTACTGAAACTGCCGTGTAGGGATAATCTCTTATGTGCTGTGTGGTTAAATTGTGGGGCATaGATAAAAACAGGACTGAGG +
Preference number: 2 (lower is better)
Translates to: SRQLLKLPCRDNLLCAVWLNCGA*IKTGLR
Trigger: CCTCAGTCCTGTTTTTATTCATGCCCCACAATTTAA...CCACACAGCACATAAGAGATTATCCCTACACGGCAGTTTCAGTAGTTGTCTTGA
42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000090541.12
ENSMUST00000178611.8
3UTR-3UTR GCA 90 bp TTGTTACAATCATCAAGAATCAGTCTCATCCCCACTGTAGGGATGAAGAAGTCCTACAGATGTGGGTTCTaGTTACAGATGTCGGTAACA +
Preference number: 2 (lower is better)
Translates to: LLQSSRISLIPTVGMKKSYRCGF*LQMSVT
Trigger: TGTTACCGACATCTGTAAGCAGAACCCACATCTGTA...GGACTTCTTCATCCCTACAGTGGGGATGAGACTGATTCTTGATGATTGTAACAA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000090541.12
ENSMUST00000178611.8
3UTR-3UTR GCA 90 bp TTGTTACAATCATCAAGAATCAGTCTCATCCCCACTGTAGGGATGAAGAAGTCCAACAAAGCCGAGAAATaGAGAGTCAATGTCAAGTGG +
Preference number: 2 (lower is better)
Translates to: LLQSSRISLIPTVGMKKSNKAEK*RVNVKW
Trigger: CCACTTGACATTGACTCTGCATTTCTCGGCTTTGTT...GGACTTCTTCATCCCTACAGTGGGGATGAGACTGATTCTTGATGATTGTAACAA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000090541.12
ENSMUST00000178611.8
3UTR-3UTR GCA 90 bp CTACCTGTAATATTTCATTTTGTTACAATCATCAAGAATCAGTCTCATCCCCACACCACTGAGCCACACTaGCAACCTCATGATCAGCTC +
Preference number: 2 (lower is better)
Translates to: LPVIFHFVTIIKNQSHPHTTEPH*QPHDQL
Trigger: GAGCTGATCATGAGGTTGGCAGTGTGGCTCAGTGGT...GTGGGGATGAGACTGATTCTTGATGATTGTAACAAAATGAAATATTACAGGTAG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000090541.12
ENSMUST00000178611.8
3UTR-3UTR GCA 90 bp CTGCTTGAAACTCCAACACCAGAGGATGTAACACTTCTGACCTCACACACACACCTATTTGTATTTGTTTaGTTCTTAAGCCCATGCATC +
Preference number: 2 (lower is better)
Translates to: LLETPTPEDVTLLTSHTHLFVFV*FLSPCI
Trigger: GATGCATGGGCTTAAGAAGCAAACAAATACAAATAG...GTGTGTGTGTGAGGTCAGAAGTGTTACATCCTCTGGTGTTGGAGTTTCAAGCAG
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000090541.12
ENSMUST00000178611.8
3UTR-3UTR TCA 90 bp TTGTTACAATCATCAAGAATCAGTCTCATCCCCACTGTAGGGATGAAGAAGTCCCTGTCAATAAAGAGTTaGTGGCCTATTAGCAAAAGG +
Preference number: 2 (lower is better)
Translates to: LLQSSRISLIPTVGMKKSLSIKS*WPISKR
Trigger: CCTTTTGCTAATAGGCCATCAACTCTTTATTGACAG...GGACTTCTTCATCCCTACAGTGGGGATGAGACTGATTCTTGATGATTGTAACAA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000090541.12
ENSMUST00000178611.8
3UTR-3UTR GCA 90 bp AAATATTTAATTTATGAGCTGGGAGATGGTTCCAGTGGGATAAAGGGCTTGCTGTACAGATGTGGGTTCTaGTTACAGATGTCGGTAACA +
Preference number: 2 (lower is better)
Translates to: KYLIYELGDGSSGIKGLLYRCGF*LQMSVT
Trigger: TGTTACCGACATCTGTAAGCAGAACCCACATCTGTA...CAGCAAGCCCTTTATCCCACTGGAACCATCTCCCAGCTCATAAATTAAATATTT
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000090541.12
ENSMUST00000178611.8
3UTR-3UTR GCA 90 bp CTACCTGTAATATTTCATTTTGTTACAATCATCAAGAATCAGTCTCATCCCCACAGCTCATACTGGGGCTaGAGAGATGGCTCAGTGTTA +
Preference number: 2 (lower is better)
Translates to: LPVIFHFVTIIKNQSHPHSSYWG*RDGSVL
Trigger: TAACACTGAGCCATCTCTGCAGCCCCAGTATGAGCT...GTGGGGATGAGACTGATTCTTGATGATTGTAACAAAATGAAATATTACAGGTAG
41% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000090541.12
ENSMUST00000178611.8
3UTR-3UTR CCA 90 bp CTACCTGTAATATTTCATTTTGTTACAATCATCAAGAATCAGTCTCATCCCCACAGTCTCTCAGGTTCCTaGCCTTCCACAGGAAGGAAA +
Preference number: 2 (lower is better)
Translates to: LPVIFHFVTIIKNQSHPHSLSGS*PSTGRK
Trigger: TTTCCTTCCTGTGGAAGGCCAGGAACCTGAGAGACT...GTGGGGATGAGACTGATTCTTGATGATTGTAACAAAATGAAATATTACAGGTAG
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000090541.12
ENSMUST00000178611.8
3UTR-3UTR GCA 90 bp CTACCTGTAATATTTCATTTTGTTACAATCATCAAGAATCAGTCTCATCCCCACCACCTTCAGTCCTCTTaGTTTAGCCTGAAACTGCCA +
Preference number: 2 (lower is better)
Translates to: LPVIFHFVTIIKNQSHPHHLQSS*FSLKLP
Trigger: TGGCAGTTTCAGGCTAAAGCAAGAGGACTGAAGGTG...GTGGGGATGAGACTGATTCTTGATGATTGTAACAAAATGAAATATTACAGGTAG
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000090541.12
ENSMUST00000178611.8
3UTR-3UTR CCA 90 bp AAATATTTAATTTATGAGCTGGGAGATGGTTCCAGTGGGATAAAGGGCTTGCTGGGGTTATTTGGAAACTaGGGTGTTAGGGTTATACTA +
Preference number: 2 (lower is better)
Translates to: KYLIYELGDGSSGIKGLLGLFGN*GVRVIL
Trigger: TAGTATAACCCTAACACCCCAGTTTCCAAATAACCC...CAGCAAGCCCTTTATCCCACTGGAACCATCTCCCAGCTCATAAATTAAATATTT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000090541.12
ENSMUST00000178611.8
3UTR-3UTR GCA 90 bp CTACCTGTAATATTTCATTTTGTTACAATCATCAAGAATCAGTCTCATCCCCACCTATTTGTATTTGTTTaGTTCTTAAGCCCATGCATC +
Preference number: 2 (lower is better)
Translates to: LPVIFHFVTIIKNQSHPHLFVFV*FLSPCI
Trigger: GATGCATGGGCTTAAGAAGCAAACAAATACAAATAG...GTGGGGATGAGACTGATTCTTGATGATTGTAACAAAATGAAATATTACAGGTAG
34% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000090541.12
ENSMUST00000178611.8
3UTR TCA 72 bp TGGATGGTTGTGAGCCACCATGTGGTTGCTGGGATTTaGACTCGGGACCTTCAGAAGAGCAGTCGGCGCTCT +
Preference number: 3 (lower is better)
Translates to: WMVVSHHVVAGI*TRDLQKSSRRS
Trigger: AGAGCGCCGACTGCTCTTCTGAAGGTCCCGAGTTCAAATCCCAGCAACCACATGGTGGCTCACAACCATCCA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000090541.12
ENSMUST00000178611.8
3UTR GCA 72 bp TATCCTCCTGGGAGACGGTGGGACCCTTCCACACTCTaGCTTATCACCAAGGCTGACCCAAGTGTCACTTCT +
Preference number: 3 (lower is better)
Translates to: YPPGRRWDPSTL*LITKADPSVTS
Trigger: AGAAGTGACACTTGGGTCAGCCTTGGTGATAAGGCAGAGTGTGGAAGGGTCCCACCGTCTCCCAGGAGGATA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000090541.12
ENSMUST00000178611.8
3UTR CCA 72 bp GGGCGCATGCCTTTAACCCCAGCTTCACAGCTAATCTaGTCTATAGTAAGTCCCAGGCCAGCCAGAGCCACA +
Preference number: 3 (lower is better)
Translates to: GRMPLTPASQLI*SIVSPRPARAT
Trigger: TGTGGCTCTGGCTGGCCTGGGACTTACTATAGACCAGATTAGCTGTGAAGCTGGGGTTAAAGGCATGCGCCC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000090541.12
ENSMUST00000178611.8
3UTR CCA 72 bp GTGACTGGGGACAGGGATTTGATTCACTTGGTTGAATaGCTGCCCTGGTCCCCAGCAGCATGTGAAACTGGG +
Preference number: 3 (lower is better)
Translates to: VTGDRDLIHLVE*LPWSPAACETG
Trigger: CCCAGTTTCACATGCTGCTGGGGACCAGGGCAGCCATTCAACCAAGTGAATCAAATCCCTGTCCCCAGTCAC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000090541.12
ENSMUST00000178611.8
3UTR TCA 72 bp GTGGGACCCTTCCACACTCTGCCTTATCACCAAGGCTaGCCCAAGTGTCACTTCTCACCATTCCAAAGACGC +
Preference number: 3 (lower is better)
Translates to: VGPFHTLPYHQG*PKCHFSPFQRR
Trigger: GCGTCTTTGGAATGGTGAGAAGTGACACTTGGGTCAGCCTTGGTGATAAGGCAGAGTGTGGAAGGGTCCCAC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000090541.12
ENSMUST00000178611.8
3UTR GCA 72 bp ACTCCAATTCCAGATCTGATGGCCTTCTGGCCTGAGTaGCTGCACGGACATACAATCCCTCCTGCCAGTTTG +
Preference number: 3 (lower is better)
Translates to: TPIPDLMAFWPE*LHGHTIPPASL
Trigger: CAAACTGGCAGGAGGGATTGTATGTCCGTGCAGGCACTCAGGCCAGAAGGCCATCAGATCTGGAATTGGAGT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000090541.12
ENSMUST00000178611.8
3UTR GCA 72 bp GGGCTGCAGAGATGGCTCAGTGTTAAGAGCACAGGCTaGTTTTCTAGAGGACCTGGGTTTACTTCCCAGTCC +
Preference number: 3 (lower is better)
Translates to: GLQRWLSVKSTG*FSRGPGFTSQS
Trigger: GGACTGGGAAGTAAACCCAGGTCCTCTAGAAAAGCAGCCTGTGCTCTTAACACTGAGCCATCTCTGCAGCCC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000090541.12
ENSMUST00000178611.8
3UTR TCA 72 bp CCACTGAGCCACACTGCCAACCTCATGATCAGCTCCTaGCTGTGGTTCCTATGCCCTTCTCAGAGCATAGTT +
Preference number: 3 (lower is better)
Translates to: PLSHTANLMISS*LWFLCPSQSIV
Trigger: AACTATGCTCTGAGAAGGGCATAGGAACCACAGTCAGGAGCTGATCATGAGGTTGGCAGTGTGGCTCAGTGG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000090541.12
ENSMUST00000178611.8
3UTR TCA 72 bp AGGACCTCTGGAAGAGCAGTCAGTGCTCTTAACCACTaGGCCATCTCTCCAGCCCAGGCCTTGAATTTCTTG +
Preference number: 3 (lower is better)
Translates to: RTSGRAVSALNH*AISPAQALNFL
Trigger: CAAGAAATTCAAGGCCTGGGCTGGAGAGATGGCTCAGTGGTTAAGAGCACTGACTGCTCTTCCAGAGGTCCT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000090541.12
ENSMUST00000178611.8
3UTR-3UTR CAA 90 bp AGCCAAATGAGGGCGAAGGGAGGTCTTGGCACAGGCCACAGAAAAAGAAGCTTCAGCAAAGATTACAGATaGTTGCCGGGCAGTGGTGGT +
Preference number: 3 (lower is better)
Translates to: SQMRAKGGLGTGHRKRSFSKDYR*LPGSGG
Trigger: ACCACCACTGCCCGGCAACAATCTGTAATCTTTGCT...GAAGCTTCTTTTTCTGTGGCCTGTGCCAAGACCTCCCTTCGCCCTCATTTGGCT
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000090541.12
ENSMUST00000178611.8
3UTR TCA 72 bp CTTTGCCAGGTCACCTTCAGTCCTCTTGCTTTAGCCTaGAACTGCCAGGCTGTCTCAGGATTTACCACCACT +
Preference number: 3 (lower is better)
Translates to: LCQVTFSPLALA*NCQAVSGFTTT
Trigger: AGTGGTGGTAAATCCTGAGACAGCCTGGCAGTTTCAGGCTAAAGCAAGAGGACTGAAGGTGACCTGGCAAAG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000090541.12
ENSMUST00000178611.8
3UTR GCA 72 bp CTTGGTGACACTTTGCCAGGTCACCTTCAGTCCTCTTaGTTTAGCCTGAAACTGCCAGGCTGTCTCAGGATT +
Preference number: 3 (lower is better)
Translates to: LGDTLPGHLQSS*FSLKLPGCLRI
Trigger: AATCCTGAGACAGCCTGGCAGTTTCAGGCTAAAGCAAGAGGACTGAAGGTGACCTGGCAAAGTGTCACCAAG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000090541.12
ENSMUST00000178611.8
3UTR GCA 72 bp GTTTCAAACATGTTAGGCGCTACCACTGAGCCACACTaGCAACCTCATGATCAGCTCCTGACTGTGGTTCCT +
Preference number: 3 (lower is better)
Translates to: VSNMLGATTEPH*QPHDQLLTVVP
Trigger: AGGAACCACAGTCAGGAGCTGATCATGAGGTTGGCAGTGTGGCTCAGTGGTAGCGCCTAACATGTTTGAAAC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000090541.12
ENSMUST00000178611.8
3UTR CCA 72 bp CACCAACATCATTACCCAGGCTATTTCATATCCTCCTaGGAGACGGTGGGACCCTTCCACACTCTGCCTTAT +
Preference number: 3 (lower is better)
Translates to: HQHHYPGYFISS*ETVGPFHTLPY
Trigger: ATAAGGCAGAGTGTGGAAGGGTCCCACCGTCTCCCAGGAGGATATGAAATAGCCTGGGTAATGATGTTGGTG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000090541.12
ENSMUST00000178611.8
3UTR TCA 72 bp TGGTTCCAGTGGGATAAAGGGCTTGCTGCCCACACATaGGGGTCTGAGTTTGGATATCCAGTAAAAGCTAGG +
Preference number: 3 (lower is better)
Translates to: WFQWDKGLAAHT*GSEFGYPVKAR
Trigger: CCTAGCTTTTACTGGATATCCAAACTCAGACCCTCATGTGTGGGCAGCAAGCCCTTTATCCCACTGGAACCA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000090541.12
ENSMUST00000178611.8
3UTR TCA 72 bp GGGACCTTCAGAAGAGCAGTCGGCGCTCTTAACCACTaGGCCAACTCGCCAGCCCTTAAAGCTTTTAATAAT +
Preference number: 3 (lower is better)
Translates to: GTFRRAVGALNH*ANSPALKAFNN
Trigger: ATTATTAAAAGCTTTAAGGGCTGGCGAGTTGGCTCAGTGGTTAAGAGCGCCGACTGCTCTTCTGAAGGTCCC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000090541.12
ENSMUST00000178611.8
3UTR TCA 72 bp CCAGAAGAGGGAGTCAGATTTCATTATGGATGGTTGTaGGCCACCATGTGGTTGCTGGGATTTGAACTCGGG +
Preference number: 3 (lower is better)
Translates to: PEEGVRFHYGWL*ATMWLLGFELG
Trigger: CCCGAGTTCAAATCCCAGCAACCACATGGTGGCTCACAACCATCCATAATGAAATCTGACTCCCTCTTCTGG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000090541.12
ENSMUST00000178611.8
3UTR GCA 72 bp AAGCATTTTCAGGCTCAAGCAAAGATTACAGATTGTTaGCGGGCAGTGGTGGTGCACGCCTTTAATCCCAGC +
Preference number: 3 (lower is better)
Translates to: KHFQAQAKITDC*RAVVVHAFNPS
Trigger: GCTGGGATTAAAGGCGTGCACCACCACTGCCCGGCAACAATCTGTAATCTTTGCTTGAGCCTGAAAATGCTT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000090541.12
ENSMUST00000178611.8
3UTR CCA 72 bp GCCTACCCCCGGGGTAGAAAGACAGGCACAGGCACATaGTTTAGAGAAACGTTGTTGTTGTTGTTGTTGTTG +
Preference number: 3 (lower is better)
Translates to: AYPRGRKTGTGT*FRETLLLLLLL
Trigger: CAACAACAACAACAACAACAACGTTTCTCTAAACCATGTGCCTGTGCCTGTCTTTCTACCCCGGGGGTAGGC
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000090541.12
ENSMUST00000178611.8
3UTR CCA 72 bp ATGAATAAAAACAGGACTGAGGGCGAGTGGGAGCAATaGCTGTGTGACACCTTTAAACTCACGCTGACTCCC +
Preference number: 3 (lower is better)
Translates to: MNKNRTEGEWEQ*LCDTFKLTLTP
Trigger: GGGAGTCAGCGTGAGTTTAAAGGTGTCACACAGCCATTGCTCCCACTCGCCCTCAGTCCTGTTTTTATTCAT
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000090541.12
ENSMUST00000178611.8
3UTR CCA 72 bp TTGTGGGGCATGAATAAAAACAGGACTGAGGGCGAGTaGGAGCAATGGCTGTGTGACACCTTTAAACTCACG +
Preference number: 3 (lower is better)
Translates to: LWGMNKNRTEGE*EQWLCDTFKLT
Trigger: CGTGAGTTTAAAGGTGTCACACAGCCATTGCTCCCACTCGCCCTCAGTCCTGTTTTTATTCATGCCCCACAA
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000090541.12
ENSMUST00000178611.8
3UTR CCA 72 bp CCCATTACAGATGGTTGTGAGCCACCATGTGGTTTCTaGGAATTGAACTCAGGACCTCTGAAGAGCAGCAGT +
Preference number: 3 (lower is better)
Translates to: PITDGCEPPCGF*ELNSGPLKSSS
Trigger: ACTGCTGCTCTTCAGAGGTCCTGAGTTCAATTCCCAGAAACCACATGGTGGCTCACAACCATCTGTAATGGG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000090541.12
ENSMUST00000178611.8
3UTR CCA 72 bp CCATTTACAGATGGTTGTGAGCCACCATGTGGTTGCTaGGAATTGAACTCAGGACCTCTGGAAGAGCAGTCA +
Preference number: 3 (lower is better)
Translates to: PFTDGCEPPCGC*ELNSGPLEEQS
Trigger: TGACTGCTCTTCCAGAGGTCCTGAGTTCAATTCCCAGCAACCACATGGTGGCTCACAACCATCTGTAAATGG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000090541.12
ENSMUST00000178611.8
3UTR-3UTR CAA 90 bp AGCCAAATGAGGGCGAAGGGAGGTCTTGGCACAGGCCACAGAAAAAGAAGCTTCAGCCATCTTGACTGCTaGACACCTCTATCTTTAATC +
Preference number: 3 (lower is better)
Translates to: SQMRAKGGLGTGHRKRSFSHLDC*TPLSLI
Trigger: GATTAAAGATAGAGGTGTCAAGCAGTCAAGATGGCT...GAAGCTTCTTTTTCTGTGGCCTGTGCCAAGACCTCCCTTCGCCCTCATTTGGCT
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000090541.12
ENSMUST00000178611.8
3UTR TCA 72 bp TGGCCCTCAGAACTGTCACTCCAGTTCCAGGAGATATaGCACCCTCAGAGACATATATGCAGGGAAAATACC +
Preference number: 3 (lower is better)
Translates to: WPSELSLQFQEI*HPQRHICRENT
Trigger: GGTATTTTCCCTGCATATATGTCTCTGAGGGTGTCATATCTCCTGGAACTGGAGTGACAGTTCTGAGGGCCA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000090541.12
ENSMUST00000178611.8
3UTR TCA 72 bp ACAGAAGAGGGCATCAGATCCCATTACAGATGGTTGTaGGCCACCATGTGGTTTCTGGGAATTGAACTCAGG +
Preference number: 3 (lower is better)
Translates to: TEEGIRSHYRWL*ATMWFLGIELR
Trigger: CCTGAGTTCAATTCCCAGAAACCACATGGTGGCTCACAACCATCTGTAATGGGATCTGATGCCCTCTTCTGT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000090541.12
ENSMUST00000178611.8
3UTR TCA 72 bp AGGAAAAAGCAACTACTTTCCCTGGGGAGTGTTCCTTaGTTACCTCCAGAGCAAGTGACCTGTCAAAGGTGC +
Preference number: 3 (lower is better)
Translates to: RKKQLLSLGSVP*LPPEQVTCQRC
Trigger: GCACCTTTGACAGGTCACTTGCTCTGGAGGTAATCAAGGAACACTCCCCAGGGAAAGTAGTTGCTTTTTCCT
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000090541.12
ENSMUST00000178611.8
3UTR TCA 72 bp GCTGATCTGTTAAGTTCAGCCAATTCCAGGGTTCTTTaGAGGCTGCGATGGGATAGAAGGAGTCTCTCAGGT +
Preference number: 3 (lower is better)
Translates to: ADLLSSANSRVL*RLRWDRRSLSG
Trigger: ACCTGAGAGACTCCTTCTATCCCATCGCAGCCTTCAAAGAACCCTGGAATTGGCTGAACTTAACAGATCAGC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000090541.12
ENSMUST00000178611.8
3UTR GCA 72 bp GTAGCTTTCCTAACCAGCTATACAACCTCAGCAGGATaGCCCACCCTCAAAGTTCTCTCCTCTTGGTTTCTT +
Preference number: 3 (lower is better)
Translates to: VAFLTSYTTSAG*PTLKVLSSWFL
Trigger: AAGAAACCAAGAGGAGAGAACTTTGAGGGTGGGGCATCCTGCTGAGGTTGTATAGCTGGTTAGGAAAGCTAC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000090541.12
ENSMUST00000178611.8
3UTR GCA 72 bp GATTTCATTATGGATGGTTGTGAGCCACCATGTGGTTaGTGGGATTTGAACTCGGGACCTTCAGAAGAGCAG +
Preference number: 3 (lower is better)
Translates to: DFIMDGCEPPCG*WDLNSGPSEEQ
Trigger: CTGCTCTTCTGAAGGTCCCGAGTTCAAATCCCAGCAACCACATGGTGGCTCACAACCATCCATAATGAAATC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000090541.12
ENSMUST00000178611.8
3UTR CCA 72 bp TACAACAAAGCCGAGAAATGCAGAGTCAATGTCAAGTaGACCTGGGTTGGAAATAGAGGCTTGCTGCAGGTC +
Preference number: 3 (lower is better)
Translates to: YNKAEKCRVNVK*TWVGNRGLLQV
Trigger: GACCTGCAGCAAGCCTCTATTTCCAACCCAGGTCCACTTGACATTGACTCTGCATTTCTCGGCTTTGTTGTA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000090541.12
ENSMUST00000178611.8
3UTR-3UTR CAA 90 bp CTGCTTGAAACTCCAACACCAGAGGATGTAACACTTCTGACCTCACACACACACATCCCTCCTGCCAGTTaGCATACACAAACATGGATG +
Preference number: 3 (lower is better)
Translates to: LLETPTPEDVTLLTSHTHIPPAS*HTQTWM
Trigger: CATCCATGTTTGTGTATGCAAACTGGCAGGAGGGAT...GTGTGTGTGTGAGGTCAGAAGTGTTACATCCTCTGGTGTTGGAGTTTCAAGCAG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000090541.12
ENSMUST00000178611.8
3UTR-3UTR CAA 90 bp CTGCTTGAAACTCCAACACCAGAGGATGTAACACTTCTGACCTCACACACACACGTTATGGTGTTCCGCTaGTGTAACAGCATTACCAGT +
Preference number: 3 (lower is better)
Translates to: LLETPTPEDVTLLTSHTHVMVFR*CNSITS
Trigger: ACTGGTAATGCTGTTACACAAGCGGAACACCATAAC...GTGTGTGTGTGAGGTCAGAAGTGTTACATCCTCTGGTGTTGGAGTTTCAAGCAG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000090541.12
ENSMUST00000178611.8
3UTR-3UTR CAA 90 bp GATTTCATTATGGATGGTTGTGAGCCACCATGTGGTTGCTGGGATTTGAACTCGTCTCCAGCCCAGGCCTaGAATTTCTTGACAACTTTG +
Preference number: 3 (lower is better)
Translates to: DFIMDGCEPPCGCWDLNSSPAQA*NFLTTL
Trigger: CAAAGTTGTCAAGAAATTCAAGGCCTGGGCTGGAGA...CGAGTTCAAATCCCAGCAACCACATGGTGGCTCACAACCATCCATAATGAAATC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000090541.12
ENSMUST00000178611.8
3UTR TCA 72 bp TGCTCCCTGAACAGAAACAGCCCTCAAGACAACTACTaGAACTGCCGTGTAGGGATAATCTCTTATGTGCTG +
Preference number: 3 (lower is better)
Translates to: CSLNRNSPQDNY*NCRVGIISYVL
Trigger: CAGCACATAAGAGATTATCCCTACACGGCAGTTTCAGTAGTTGTCTTGAGGGCTGTTTCTGTTCAGGGAGCA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000090541.12
ENSMUST00000178611.8
3UTR GCA 72 bp ATGTCAAGTGGACCTGGGTTGGAAATAGAGGCTTGCTaGAGGTCATTCAACATAGTCTTGATGAGTCAGCAC +
Preference number: 3 (lower is better)
Translates to: MSSGPGLEIEAC*RSFNIVLMSQH
Trigger: GTGCTGACTCATCAAGACTATGTTGAATGACCTGCAGCAAGCCTCTATTTCCAACCCAGGTCCACTTGACAT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000090541.12
ENSMUST00000178611.8
3UTR CCA 72 bp AAAGCCGAGAAATGCAGAGTCAATGTCAAGTGGACCTaGGTTGGAAATAGAGGCTTGCTGCAGGTCATTCAA +
Preference number: 3 (lower is better)
Translates to: KAEKCRVNVKWT*VGNRGLLQVIQ
Trigger: TTGAATGACCTGCAGCAAGCCTCTATTTCCAACCCAGGTCCACTTGACATTGACTCTGCATTTCTCGGCTTT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000090541.12
ENSMUST00000178611.8
3UTR CCA 72 bp CTGTCAAAGGTGCCAGCGTCATATCCCCAAGGGTTATaGTGTTCCGCTTGTGTAACAGCATTACCAGTTAAT +
Preference number: 3 (lower is better)
Translates to: LSKVPASYPQGL*CSACVTALPVN
Trigger: ATTAACTGGTAATGCTGTTACACAAGCGGAACACCATAACCCTTGGGGATATGACGCTGGCACCTTTGACAG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000090541.12
ENSMUST00000178611.8
3UTR CCA 72 bp TTCAGACACTCCAGAAGAGGGAGTCAGATTTCATTATaGATGGTTGTGAGCCACCATGTGGTTGCTGGGATT +
Preference number: 3 (lower is better)
Translates to: FRHSRRGSQISL*MVVSHHVVAGI
Trigger: AATCCCAGCAACCACATGGTGGCTCACAACCATCCATAATGAAATCTGACTCCCTCTTCTGGAGTGTCTGAA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000090541.12
ENSMUST00000178611.8
3UTR-3UTR CAA 90 bp CTGCTTGAAACTCCAACACCAGAGGATGTAACACTTCTGACCTCACACACACACAGCCATCTTGACTGCTaGACACCTCTATCTTTAATC +
Preference number: 3 (lower is better)
Translates to: LLETPTPEDVTLLTSHTHSHLDC*TPLSLI
Trigger: GATTAAAGATAGAGGTGTCAAGCAGTCAAGATGGCT...GTGTGTGTGTGAGGTCAGAAGTGTTACATCCTCTGGTGTTGGAGTTTCAAGCAG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000090541.12
ENSMUST00000178611.8
3UTR-3UTR CAA 90 bp TCAAGACAACTACTGAAACTGCCGTGTAGGGATAATCTCTTATGTGCTGTGTGGATCCCTCCTGCCAGTTaGCATACACAAACATGGATG +
Preference number: 3 (lower is better)
Translates to: SRQLLKLPCRDNLLCAVWIPPAS*HTQTWM
Trigger: CATCCATGTTTGTGTATGCAAACTGGCAGGAGGGAT...CCACACAGCACATAAGAGATTATCCCTACACGGCAGTTTCAGTAGTTGTCTTGA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000090541.12
ENSMUST00000178611.8
3UTR-3UTR CAA 90 bp GATTTCATTATGGATGGTTGTGAGCCACCATGTGGTTGCTGGGATTTGAACTCGGTTGGAAATAGAGGCTaGCTGCAGGTCATTCAACAT +
Preference number: 3 (lower is better)
Translates to: DFIMDGCEPPCGCWDLNSVGNRG*LQVIQH
Trigger: ATGTTGAATGACCTGCAGCAAGCCTCTATTTCCAAC...CGAGTTCAAATCCCAGCAACCACATGGTGGCTCACAACCATCCATAATGAAATC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000090541.12
ENSMUST00000178611.8
3UTR TCA 72 bp GTAACAGCATTACCAGTTAATCTATTGCTCCCTTGGTaGCACTTTGCCAGGTCACCTTCAGTCCTCTTGCTT +
Preference number: 3 (lower is better)
Translates to: VTALPVNLLLPW*HFARSPSVLLL
Trigger: AAGCAAGAGGACTGAAGGTGACCTGGCAAAGTGTCACCAAGGGAGCAATAGATTAACTGGTAATGCTGTTAC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000090541.12
ENSMUST00000178611.8
3UTR GCA 72 bp ATACTACCAGGCCCCATATACAACAAAGCCGAGAAATaGAGAGTCAATGTCAAGTGGACCTGGGTTGGAAAT +
Preference number: 3 (lower is better)
Translates to: ILPGPIYNKAEK*RVNVKWTWVGN
Trigger: ATTTCCAACCCAGGTCCACTTGACATTGACTCTGCATTTCTCGGCTTTGTTGTATATGGGGCCTGGTAGTAT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000090541.12
ENSMUST00000178611.8
3UTR-3UTR CAA 90 bp CTACCTGTAATATTTCATTTTGTTACAATCATCAAGAATCAGTCTCATCCCCACGGGCGAAGGGAGGTCTaGGCACAGGCCACAGAAAAA +
Preference number: 3 (lower is better)
Translates to: LPVIFHFVTIIKNQSHPHGRREV*AQATEK
Trigger: TTTTTCTGTGGCCTGTGCCAAGACCTCCCTTCGCCC...GTGGGGATGAGACTGATTCTTGATGATTGTAACAAAATGAAATATTACAGGTAG
44% GC, longest homopolymer 5 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000090541.12
ENSMUST00000178611.8
3UTR-3UTR CAA 90 bp AAATATTTAATTTATGAGCTGGGAGATGGTTCCAGTGGGATAAAGGGCTTGCTGAGGGATTTGATTCACTaGGTTGAATGGCTGCCCTGG +
Preference number: 3 (lower is better)
Translates to: KYLIYELGDGSSGIKGLLRDLIH*VEWLPW
Trigger: CCAGGGCAGCCATTCAACCAAGTGAATCAAATCCCT...CAGCAAGCCCTTTATCCCACTGGAACCATCTCCCAGCTCATAAATTAAATATTT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000090541.12
ENSMUST00000178611.8
3UTR-3UTR CAA 90 bp AAATATTTAATTTATGAGCTGGGAGATGGTTCCAGTGGGATAAAGGGCTTGCTGTGTGGTTTCTGGGAATaGAACTCAGGACCTCTGAAG +
Preference number: 3 (lower is better)
Translates to: KYLIYELGDGSSGIKGLLCGFWE*NSGPLK
Trigger: CTTCAGAGGTCCTGAGTTCAATTCCCAGAAACCACA...CAGCAAGCCCTTTATCCCACTGGAACCATCTCCCAGCTCATAAATTAAATATTT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000090541.12
ENSMUST00000178611.8
3UTR TCA 72 bp TATCTAGAGGCTATGTTAGGAATGACTACTGCTCCCTaGACAGAAACAGCCCTCAAGACAACTACTGAAACT +
Preference number: 3 (lower is better)
Translates to: YLEAMLGMTTAP*TETALKTTTET
Trigger: AGTTTCAGTAGTTGTCTTGAGGGCTGTTTCTGTTCAGGGAGCAGTAGTCATTCCTAACATAGCCTCTAGATA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000090541.12
ENSMUST00000178611.8
3UTR-3UTR CAA 90 bp TCAAGACAACTACTGAAACTGCCGTGTAGGGATAATCTCTTATGTGCTGTGTGGGTCAGTATGCTAAACTaGAAAGTGACAAAGCACCAA +
Preference number: 3 (lower is better)
Translates to: SRQLLKLPCRDNLLCAVWVSMLN*KVTKHQ
Trigger: TTGGTGCTTTGTCACTTTCAAGTTTAGCATACTGAC...CCACACAGCACATAAGAGATTATCCCTACACGGCAGTTTCAGTAGTTGTCTTGA
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000090541.12
ENSMUST00000178611.8
3UTR-3UTR CAA 90 bp TTGTTACAATCATCAAGAATCAGTCTCATCCCCACTGTAGGGATGAAGAAGTCCGCTATTTGTATTTGTTaGCTTCTTAAGCCCATGCAT +
Preference number: 3 (lower is better)
Translates to: LLQSSRISLIPTVGMKKSAICIC*LLKPMH
Trigger: ATGCATGGGCTTAAGAAGCAAACAAATACAAATAGC...GGACTTCTTCATCCCTACAGTGGGGATGAGACTGATTCTTGATGATTGTAACAA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000090541.12
ENSMUST00000178611.8
CDS-3UTR CCA 90 bp CTTAGCAGGACTGCGGTTCACCACTCAGCACAGCGCTTGTTCTGCACAGCGCTTCTTAGATGGGGCCTCTaGTCTGCTCAGGAGGGAGGC +
Preference number: 4 (lower is better)
Translates to: LSRTAVHHSAQRLFCTALLRWGL*SAQEGG
Trigger: GCCTCCCTCCTGAGCAGACCAGAGGCCCCATCTAAG...AAGCGCTGTGCAGAACAAGCGCTGTGCTGAGTGGTGAACCGCAGTCCTGCTAAG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000090541.12
ENSMUST00000178611.8
CDS-3UTR CCA 90 bp CTTAGCAGGACTGCGGTTCACCACTCAGCACAGCGCTTGTTCTGCACAGCGCTTGAAATGACACTGGTCTaGAATTCCCGTCGGGCCACC +
Preference number: 4 (lower is better)
Translates to: LSRTAVHHSAQRLFCTALEMTLV*NSRRAT
Trigger: GGTGGCCCGACGGGAATTCCAGACCAGTGTCATTTC...AAGCGCTGTGCAGAACAAGCGCTGTGCTGAGTGGTGAACCGCAGTCCTGCTAAG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000090541.12
ENSMUST00000178611.8
CDS-3UTR GCA 90 bp AGCCAAATGAGGGCGAAGGGAGGTCTTGGCACAGGCCACAGAAAAAGAAGCTTCAGCTACCAAACACTGTaGCAATGCCAGCTCCTGATC +
Preference number: 4 (lower is better)
Translates to: SQMRAKGGLGTGHRKRSFSYQTL*QCQLLI
Trigger: GATCAGGAGCTGGCATTGGCACAGTGTTTGGTAGCT...GAAGCTTCTTTTTCTGTGGCCTGTGCCAAGACCTCCCTTCGCCCTCATTTGGCT
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000090541.12
ENSMUST00000178611.8
3UTR CAA 72 bp ACAGATGGTTGTGAGCCACCATGTGGTTTCTGGGAATaGAACTCAGGACCTCTGAAGAGCAGCAGTCAGTGC +
Preference number: 4 (lower is better)
Translates to: TDGCEPPCGFWE*NSGPLKSSSQC
Trigger: GCACTGACTGCTGCTCTTCAGAGGTCCTGAGTTCAATTCCCAGAAACCACATGGTGGCTCACAACCATCTGT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000090541.12
ENSMUST00000178611.8
3UTR CAA 72 bp TATGAGCTGGGAGATGGTTCCAGTGGGATAAAGGGCTaGCTGCCCACACATGAGGGTCTGAGTTTGGATATC +
Preference number: 4 (lower is better)
Translates to: YELGDGSSGIKG*LPTHEGLSLDI
Trigger: GATATCCAAACTCAGACCCTCATGTGTGGGCAGCAAGCCCTTTATCCCACTGGAACCATCTCCCAGCTCATA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000090541.12
ENSMUST00000178611.8
CDS-3UTR GCA 90 bp AAAACAGGACTGAGGGCGAGTGGGAGCAATGGCTGTGTGACACCTTTAAACTCAAGCTACCAAACACTGTaGCAATGCCAGCTCCTGATC +
Preference number: 4 (lower is better)
Translates to: KTGLRASGSNGCVTPLNSSYQTL*QCQLLI
Trigger: GATCAGGAGCTGGCATTGGCACAGTGTTTGGTAGCT...TGAGTTTAAAGGTGTCACACAGCCATTGCTCCCACTCGCCCTCAGTCCTGTTTT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000090541.12
ENSMUST00000178611.8
3UTR CAA 72 bp GCCCCCAACGAAATGGCACCTGTCAGTATGCTAAACTaGAAAGTGACAAAGCACCAACATCATTACCCAGGC +
Preference number: 4 (lower is better)
Translates to: APNEMAPVSMLN*KVTKHQHHYPG
Trigger: GCCTGGGTAATGATGTTGGTGCTTTGTCACTTTCAAGTTTAGCATACTGACAGGTGCCATTTCGTTGGGGGC
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000090541.12
ENSMUST00000178611.8
CDS-3UTR CCA 90 bp TTGTTACAATCATCAAGAATCAGTCTCATCCCCACTGTAGGGATGAAGAAGTCCGAAATGACACTGGTCTaGAATTCCCGTCGGGCCACC +
Preference number: 4 (lower is better)
Translates to: LLQSSRISLIPTVGMKKSEMTLV*NSRRAT
Trigger: GGTGGCCCGACGGGAATTCCAGACCAGTGTCATTTC...GGACTTCTTCATCCCTACAGTGGGGATGAGACTGATTCTTGATGATTGTAACAA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000090541.12
ENSMUST00000178611.8
CDS-3UTR CCA 90 bp GAGAAACGTTGTTGTTGTTGTTGTTGTTGTTTAATGGTAAAGCTCAGTAGACTCCTTAGATGGGGCCTCTaGTCTGCTCAGGAGGGAGGC +
Preference number: 4 (lower is better)
Translates to: EKRCCCCCCCLMVKLSRLLRWGL*SAQEGG
Trigger: GCCTCCCTCCTGAGCAGACCAGAGGCCCCATCTAAG...GAGTCTACTGAGCTTTACCATTAAACAACAACAACAACAACAACAACGTTTCTC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000090541.12
ENSMUST00000107684.2
ENSMUST00000107686.8
ENSMUST00000178611.8
3UTR CAA 72 bp CCGAGAAATGCAGAGTCAATGTCAAGTGGACCTGGGTaGGAAATAGAGGCTTGCTGCAGGTCATTCAACATA +
Preference number: 4 (lower is better)
Translates to: PRNAESMSSGPG*EIEACCRSFNI
Trigger: TATGTTGAATGACCTGCAGCAAGCCTCTATTTCCAACCCAGGTCCACTTGACATTGACTCTGCATTTCTCGG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000090541.12
ENSMUST00000178611.8
3UTR CAA 72 bp CATTACCAGTTAATCTATTGCTCCCTTGGTGACACTTaGCCAGGTCACCTTCAGTCCTCTTGCTTTAGCCTG +
Preference number: 4 (lower is better)
Translates to: HYQLIYCSLGDT*PGHLQSSCFSL
Trigger: CAGGCTAAAGCAAGAGGACTGAAGGTGACCTGGCAAAGTGTCACCAAGGGAGCAATAGATTAACTGGTAATG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000090541.12
ENSMUST00000178611.8
CDS-3UTR CCA 90 bp CTACCTGTAATATTTCATTTTGTTACAATCATCAAGAATCAGTCTCATCCCCACCTTAGATGGGGCCTCTaGTCTGCTCAGGAGGGAGGC +
Preference number: 4 (lower is better)
Translates to: LPVIFHFVTIIKNQSHPHLRWGL*SAQEGG
Trigger: GCCTCCCTCCTGAGCAGACCAGAGGCCCCATCTAAG...GTGGGGATGAGACTGATTCTTGATGATTGTAACAAAATGAAATATTACAGGTAG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000090541.12
ENSMUST00000178611.8
CDS-3UTR CCA 90 bp GAGAAACGTTGTTGTTGTTGTTGTTGTTGTTTAATGGTAAAGCTCAGTAGACTCGGAAGGCTGCTTAGATaGGGCCTCTGGTCTGCTCAG +
Preference number: 4 (lower is better)
Translates to: EKRCCCCCCCLMVKLSRLGRLLR*GLWSAQ
Trigger: CTGAGCAGACCAGAGGCCCCATCTAAGCAGCCTTCC...GAGTCTACTGAGCTTTACCATTAAACAACAACAACAACAACAACAACGTTTCTC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000090541.12
ENSMUST00000107684.2
ENSMUST00000107686.8
ENSMUST00000178611.8
3UTR CAA 72 bp AGCAGACAAGAAAGCATTCTCCCTCCAAGAGTCCACTaGTTAAAGAGTCCTAGCCCTGCTGATCTGTTAAGT +
Preference number: 4 (lower is better)
Translates to: SRQESILPPRVH*LKSPSPADLLS
Trigger: ACTTAACAGATCAGCAGGGCTAGGACTCTTTAACAAGTGGACTCTTGGAGGGAGAATGCTTTCTTGTCTGCT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000090541.12
ENSMUST00000178611.8
CDS-3UTR CCA 90 bp CTACCTGTAATATTTCATTTTGTTACAATCATCAAGAATCAGTCTCATCCCCACGGAAGGCTGCTTAGATaGGGCCTCTGGTCTGCTCAG +
Preference number: 4 (lower is better)
Translates to: LPVIFHFVTIIKNQSHPHGRLLR*GLWSAQ
Trigger: CTGAGCAGACCAGAGGCCCCATCTAAGCAGCCTTCC...GTGGGGATGAGACTGATTCTTGATGATTGTAACAAAATGAAATATTACAGGTAG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000090541.12
ENSMUST00000178611.8
CDS-3UTR CCA 90 bp GAGAAACGTTGTTGTTGTTGTTGTTGTTGTTTAATGGTAAAGCTCAGTAGACTCGAAATGACACTGGTCTaGAATTCCCGTCGGGCCACC +
Preference number: 4 (lower is better)
Translates to: EKRCCCCCCCLMVKLSRLEMTLV*NSRRAT
Trigger: GGTGGCCCGACGGGAATTCCAGACCAGTGTCATTTC...GAGTCTACTGAGCTTTACCATTAAACAACAACAACAACAACAACAACGTTTCTC
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000090541.12
ENSMUST00000107684.2
ENSMUST00000107686.8
ENSMUST00000178611.8
CDS-3UTR GCA 90 bp GAGAAACGTTGTTGTTGTTGTTGTTGTTGTTTAATGGTAAAGCTCAGTAGACTCAGCTACCAAACACTGTaGCAATGCCAGCTCCTGATC +
Preference number: 4 (lower is better)
Translates to: EKRCCCCCCCLMVKLSRLSYQTL*QCQLLI
Trigger: GATCAGGAGCTGGCATTGGCACAGTGTTTGGTAGCT...GAGTCTACTGAGCTTTACCATTAAACAACAACAACAACAACAACAACGTTTCTC
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000090541.12
ENSMUST00000107684.2
ENSMUST00000107686.8
ENSMUST00000178611.8
3UTR CAA 72 bp CAAAAAGCCTTTACACCACAGAGCCATCTTGACTGCTaGACACCTCTATCTTTAATCTGCTTCTCCATAGTA +
Preference number: 4 (lower is better)
Translates to: QKAFTPQSHLDC*TPLSLICFSIV
Trigger: TACTATGGAGAAGCAGATTAAAGATAGAGGTGTCAAGCAGTCAAGATGGCTCTGTGGTGTAAAGGCTTTTTG
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000090541.12
ENSMUST00000178611.8
3UTR CAA 72 bp AAGACAGGCACAGGCACATGGTTTAGAGAAACGTTGTaGTTGTTGTTGTTGTTGTTTAATGGTAAAGCTCAG +
Preference number: 4 (lower is better)
Translates to: KTGTGTWFRETL*LLLLLFNGKAQ
Trigger: CTGAGCTTTACCATTAAACAACAACAACAACAACAACAACGTTTCTCTAAACCATGTGCCTGTGCCTGTCTT
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000090541.12
ENSMUST00000178611.8
3UTR CAA 72 bp AGAAAGACAGGCACAGGCACATGGTTTAGAGAAACGTaGTTGTTGTTGTTGTTGTTGTTTAATGGTAAAGCT +
Preference number: 4 (lower is better)
Translates to: RKTGTGTWFRET*LLLLLLFNGKA
Trigger: AGCTTTACCATTAAACAACAACAACAACAACAACAACGTTTCTCTAAACCATGTGCCTGTGCCTGTCTTTCT
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000090541.12
ENSMUST00000178611.8