Pregenerated sensors for ATP5E (Mus musculus)
Ensembl gene IDs: ENSMUSG00000016252Ensembl transcript IDs: ENSMUST00000016396.8
Found 5 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR GCA 90 bp | CGAGATGGGCAGCCTGTCCCCCAGGAGGTGAGGTTGATTTCCATCTaGCAGAACAGGGGCCCACATGCTTCACCTTCAAGACTCAGCACT | + |
|
Preference number: 1 (lower is better) Translates to: RDGQPVPQEVRLISI*QNRGPHASPSRLST Trigger: AGTGCTGAGTCTTGAAGGTGAAGCATGTGGGCCCCTGTTCTGGCAGATGGAAATCAACCTCACCTCCTGGGGGACAGGCTGCCCATCTCG 58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000016396.8 |
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| 3UTR GCA 72 bp | CAGCCTGTCCCCCAGGAGGTGAGGTTGATTTCCATCTaGCAGAACAGGGGCCCACATGCTTCACCTTCAAGA | + |
|
Preference number: 3 (lower is better) Translates to: QPVPQEVRLISI*QNRGPHASPSR Trigger: TCTTGAAGGTGAAGCATGTGGGCCCCTGTTCTGGCAGATGGAAATCAACCTCACCTCCTGGGGGACAGGCTG 57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000016396.8 |
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| CDS-3UTR TCA 90 bp | TGTCCCCCAGGAGGTGAGGTTGATTTCCATCTGCCAGAACAGGGGCCCACATGCAAAACCGGATGTAGCTaGGTCCAGCCTGTCGCCAGT | + |
|
Preference number: 4 (lower is better) Translates to: CPPGGEVDFHLPEQGPTCKTGCS*VQPVAS Trigger: ACTGGCGACAGGCTGGACTCAGCTACATCCGGTTTT...GCATGTGGGCCCCTGTTCTGGCAGATGGAAATCAACCTCACCTCCTGGGGGACA 58% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000016396.8 |
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| CDS-3UTR GCA 90 bp | AGGTTGATTTCCATCTGCCAGAACAGGGGCCCACATGCTTCACCTTCAAGACTCCAATTTTTATGCTGCTaGCCGAAGTCTTCTCAGCGT | + |
|
Preference number: 4 (lower is better) Translates to: RLISICQNRGPHASPSRLQFLCC*PKSSQR Trigger: ACGCTGAGAAGACTTCGGGCAGCAGCATAAAAATTG...GAGTCTTGAAGGTGAAGCATGTGGGCCCCTGTTCTGGCAGATGGAAATCAACCT 49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000016396.8 |
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| CDS TCA 72 bp | TTATGCTGCTGCCCGAAGTCTTCTCAGCGTTCGCTTTaGACTCGGTCTTCAGGGCATCCCTCACTGCTTTTG | + |
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Preference number: 6 (lower is better) Translates to: LCCCPKSSQRSL*TRSSGHPSLLL Trigger: CAAAAGCAGTGAGGGATGCCCTGAAGACCGAGTTCAAAGCGAACGCTGAGAAGACTTCGGGCAGCAGCATAA 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000016396.8 |
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