Pregenerated sensors for ATP5D (Mus musculus)
Ensembl gene IDs: ENSMUSG00000003072Ensembl transcript IDs: ENSMUST00000003156.15, ENSMUST00000105366.2, ENSMUST00000105367.8
Found 44 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR CCA 90 bp | GCACCAGGAAGCTTTAAGCCCAGCAACTGGAGCACTGCTGACCCCTaGTGGCCACTTCAGCCCACTGGGAACTTCTCATCGGCCTGGACC | + |
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Preference number: 1 (lower is better) Translates to: APGSFKPSNWSTADP*WPLQPTGNFSSAWT Trigger: GGTCCAGGCCGATGAGAAGTTCCCAGTGGGCTGAAGTGGCCACCAGGGGTCAGCAGTGCTCCAGTTGCTGGGCTTAAAGCTTCCTGGTGC 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000003156.15 ENSMUST00000105366.2 ENSMUST00000105367.8 |
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| 3UTR TCA 90 bp | TCTCTCCAGAGGCATCGTGGGGATGCCAGATTGGGGAATCCTCCATaGCCTGGCAGACAGGCACCAGGAAGCTTTAAGCCCAGCAACTGG | + |
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Preference number: 1 (lower is better) Translates to: SLQRHRGDARLGNPP*PGRQAPGSFKPSNW Trigger: CCAGTTGCTGGGCTTAAAGCTTCCTGGTGCCTGTCTGCCAGGTCATGGAGGATTCCCCAATCTGGCATCCCCACGATGCCTCTGGAGAGA 58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000003156.15 ENSMUST00000105366.2 ENSMUST00000105367.8 |
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| 3UTR-3UTR CCA 90 bp | GGGATGCCAGATTGGGGAATCCTCCATGACCTGGCAGACAGGCACCAGGAAGCTGAATCCTCCATGACCTaGCAGACAGGCACCAGGAAG | + |
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Preference number: 2 (lower is better) Translates to: GMPDWGILHDLADRHQEAESSMT*QTGTRK Trigger: CTTCCTGGTGCCTGTCTGCCAGGTCATGGAGGATTC...AGCTTCCTGGTGCCTGTCTGCCAGGTCATGGAGGATTCCCCAATCTGGCATCCC 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000003156.15 ENSMUST00000105366.2 ENSMUST00000105367.8 |
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| 3UTR-3UTR TCA 90 bp | ATGCCAGATTGGGGAATCCTCCATGACCTGGCAGACAGGCACCAGGAAGCTTTATTGGGGAATCCTCCATaGCCTGGCAGACAGGCACCA | + |
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Preference number: 2 (lower is better) Translates to: MPDWGILHDLADRHQEALLGNPP*PGRQAP Trigger: TGGTGCCTGTCTGCCAGGTCATGGAGGATTCCCCAA...TAAAGCTTCCTGGTGCCTGTCTGCCAGGTCATGGAGGATTCCCCAATCTGGCAT 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000003156.15 ENSMUST00000105366.2 ENSMUST00000105367.8 |
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| 3UTR CCA 72 bp | TGGCCACTTCAGCCCACTGGGAACTTCTCATCGGCCTaGACCTGGCTCAGTTTCCCCGTGGGTGTCAGACAG | + |
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Preference number: 3 (lower is better) Translates to: WPLQPTGNFSSA*TWLSFPVGVRQ Trigger: CTGTCTGACACCCACGGGGAAACTGAGCCAGGTCCAGGCCGATGAGAAGTTCCCAGTGGGCTGAAGTGGCCA 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000003156.15 ENSMUST00000105366.2 ENSMUST00000105367.8 |
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| CDS-3UTR CCA 90 bp | ACTGGGAACTTCTCATCGGCCTGGACCTGGCTCAGTTTCCCCGTGGGTGTCAGAGCGCCTTCTCCAGGTTaGCCCGGGCTGCCCCCAGGT | + |
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Preference number: 4 (lower is better) Translates to: TGNFSSAWTWLSFPVGVRAPSPG*PGLPPG Trigger: ACCTGGGGGCAGCCCGGGCCAACCTGGAGAAGGCGC...TCTGACACCCACGGGGAAACTGAGCCAGGTCCAGGCCGATGAGAAGTTCCCAGT 64% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000003156.15 ENSMUST00000105367.8 |
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| CDS-3UTR TCA 90 bp | ACTGGGAACTTCTCATCGGCCTGGACCTGGCTCAGTTTCCCCGTGGGTGTCAGATCGGGGAGGCAAAGGTaGAGGACATCTGTCCGGGCC | + |
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Preference number: 4 (lower is better) Translates to: TGNFSSAWTWLSFPVGVRSGRQR*RTSVRA Trigger: GGCCCGGACAGATGTCCTTCACCTTTGCCTCCCCGA...TCTGACACCCACGGGGAAACTGAGCCAGGTCCAGGCCGATGAGAAGTTCCCAGT 61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000003156.15 ENSMUST00000105366.2 ENSMUST00000105367.8 |
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| CDS-3UTR GCA 90 bp | CCCAGCAACTGGAGCACTGCTGACCCCTGGTGGCCACTTCAGCCCACTGGGAACCTGTCAAAGAACACCTaGGTCGGGGAGGCAAAGGTG | + |
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Preference number: 4 (lower is better) Translates to: PSNWSTADPWWPLQPTGNLSKNT*VGEAKV Trigger: CACCTTTGCCTCCCCGACGCAGGTGTTCTTTGACAG...GTTCCCAGTGGGCTGAAGTGGCCACCAGGGGTCAGCAGTGCTCCAGTTGCTGGG 61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000003156.15 ENSMUST00000105366.2 ENSMUST00000105367.8 |
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| CDS-3UTR CCA 90 bp | ATGCCAGATTGGGGAATCCTCCATGACCTGGCAGACAGGCACCAGGAAGCTTTAGCGCCTTCTCCAGGTTaGCCCGGGCTGCCCCCAGGT | + |
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Preference number: 4 (lower is better) Translates to: MPDWGILHDLADRHQEALAPSPG*PGLPPG Trigger: ACCTGGGGGCAGCCCGGGCCAACCTGGAGAAGGCGC...TAAAGCTTCCTGGTGCCTGTCTGCCAGGTCATGGAGGATTCCCCAATCTGGCAT 61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000003156.15 ENSMUST00000105367.8 |
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| CDS-3UTR TCA 90 bp | GAACTTCTCATCGGCCTGGACCTGGCTCAGTTTCCCCGTGGGTGTCAGACAGTATCGGGGAGGCAAAGGTaGAGGACATCTGTCCGGGCC | + |
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Preference number: 4 (lower is better) Translates to: ELLIGLDLAQFPRGCQTVSGRQR*RTSVRA Trigger: GGCCCGGACAGATGTCCTTCACCTTTGCCTCCCCGA...TACTGTCTGACACCCACGGGGAAACTGAGCCAGGTCCAGGCCGATGAGAAGTTC 60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000003156.15 ENSMUST00000105366.2 ENSMUST00000105367.8 |
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| CDS-3UTR GCA 90 bp | GGAGCACTGCTGACCCCTGGTGGCCACTTCAGCCCACTGGGAACTTCTCATCGGCATGGGATGCCAAGATaGCAAAGGCTCCAGTCAGCG | + |
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Preference number: 4 (lower is better) Translates to: GALLTPGGHFSPLGTSHRHGMPR*QRLQSA Trigger: CGCTGACTGGAGCCTTTGGCATCTTGGCATCCCATG...CCGATGAGAAGTTCCCAGTGGGCTGAAGTGGCCACCAGGGGTCAGCAGTGCTCC 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000003156.15 ENSMUST00000105366.2 ENSMUST00000105367.8 |
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| CDS-3UTR GCA 90 bp | CTGGGAACTTCTCATCGGCCTGGACCTGGCTCAGTTTCCCCGTGGGTGTCAGACCTGTCAAAGAACACCTaGGTCGGGGAGGCAAAGGTG | + |
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Preference number: 4 (lower is better) Translates to: LGTSHRPGPGSVSPWVSDLSKNT*VGEAKV Trigger: CACCTTTGCCTCCCCGACGCAGGTGTTCTTTGACAG...GTCTGACACCCACGGGGAAACTGAGCCAGGTCCAGGCCGATGAGAAGTTCCCAG 59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000003156.15 ENSMUST00000105366.2 ENSMUST00000105367.8 |
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| CDS-3UTR TCA 90 bp | ATGCCAGATTGGGGAATCCTCCATGACCTGGCAGACAGGCACCAGGAAGCTTTATCGGGGAGGCAAAGGTaGAGGACATCTGTCCGGGCC | + |
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Preference number: 4 (lower is better) Translates to: MPDWGILHDLADRHQEALSGRQR*RTSVRA Trigger: GGCCCGGACAGATGTCCTTCACCTTTGCCTCCCCGA...TAAAGCTTCCTGGTGCCTGTCTGCCAGGTCATGGAGGATTCCCCAATCTGGCAT 58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000003156.15 ENSMUST00000105366.2 ENSMUST00000105367.8 |
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| CDS-3UTR GCA 90 bp | ACTTCTCATCGGCCTGGACCTGGCTCAGTTTCCCCGTGGGTGTCAGACAGTAGGCTGTCAAAGAACACCTaGGTCGGGGAGGCAAAGGTG | + |
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Preference number: 4 (lower is better) Translates to: TSHRPGPGSVSPWVSDSRLSKNT*VGEAKV Trigger: CACCTTTGCCTCCCCGACGCAGGTGTTCTTTGACAG...CCTACTGTCTGACACCCACGGGGAAACTGAGCCAGGTCCAGGCCGATGAGAAGT 58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000003156.15 ENSMUST00000105366.2 ENSMUST00000105367.8 |
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| CDS-3UTR GCA 90 bp | GAACTTCTCATCGGCCTGGACCTGGCTCAGTTTCCCCGTGGGTGTCAGACAGTACATGGGATGCCAAGATaGCAAAGGCTCCAGTCAGCG | + |
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Preference number: 4 (lower is better) Translates to: ELLIGLDLAQFPRGCQTVHGMPR*QRLQSA Trigger: CGCTGACTGGAGCCTTTGGCATCTTGGCATCCCATG...TACTGTCTGACACCCACGGGGAAACTGAGCCAGGTCCAGGCCGATGAGAAGTTC 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000003156.15 ENSMUST00000105366.2 ENSMUST00000105367.8 |
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| CDS-3UTR CCA 90 bp | AACTGGAGCACTGCTGACCCCTGGTGGCCACTTCAGCCCACTGGGAACTTCTCAGTAGGACCTGTAGTGTaGGGACATGGGATGCCAAGA | + |
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Preference number: 4 (lower is better) Translates to: NWSTADPWWPLQPTGNFSVGPVV*GHGMPR Trigger: TCTTGGCATCCCATGTCCCCACACTACAGGTCCTAC...TGAGAAGTTCCCAGTGGGCTGAAGTGGCCACCAGGGGTCAGCAGTGCTCCAGTT 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000003156.15 ENSMUST00000105366.2 ENSMUST00000105367.8 |
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| CDS-3UTR CCA 90 bp | TTTAAGCCCAGCAACTGGAGCACTGCTGACCCCTGGTGGCCACTTCAGCCCACTTGTAGTGTGGGGACATaGGATGCCAAGATGCCAAAG | + |
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Preference number: 4 (lower is better) Translates to: FKPSNWSTADPWWPLQPTCSVGT*DAKMPK Trigger: CTTTGGCATCTTGGCATCCCATGTCCCCACACTACA...AGTGGGCTGAAGTGGCCACCAGGGGTCAGCAGTGCTCCAGTTGCTGGGCTTAAA 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000003156.15 ENSMUST00000105366.2 ENSMUST00000105367.8 |
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| CDS-3UTR CCA 90 bp | AGACAGGCACCAGGAAGCTTTAAGCCCAGCAACTGGAGCACTGCTGACCCCTGGTGTAGTGTGGGGACATaGGATGCCAAGATGCCAAAG | + |
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Preference number: 4 (lower is better) Translates to: RQAPGSFKPSNWSTADPWCSVGT*DAKMPK Trigger: CTTTGGCATCTTGGCATCCCATGTCCCCACACTACA...CCAGGGGTCAGCAGTGCTCCAGTTGCTGGGCTTAAAGCTTCCTGGTGCCTGTCT 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000003156.15 ENSMUST00000105366.2 ENSMUST00000105367.8 |
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| CDS-3UTR CCA 90 bp | ACTGGGAACTTCTCATCGGCCTGGACCTGGCTCAGTTTCCCCGTGGGTGTCAGATGTAGTGTGGGGACATaGGATGCCAAGATGCCAAAG | + |
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Preference number: 4 (lower is better) Translates to: TGNFSSAWTWLSFPVGVRCSVGT*DAKMPK Trigger: CTTTGGCATCTTGGCATCCCATGTCCCCACACTACA...TCTGACACCCACGGGGAAACTGAGCCAGGTCCAGGCCGATGAGAAGTTCCCAGT 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000003156.15 ENSMUST00000105366.2 ENSMUST00000105367.8 |
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| CDS-3UTR CCA 90 bp | ATGCCAGATTGGGGAATCCTCCATGACCTGGCAGACAGGCACCAGGAAGCTTTAGTAGGACCTGTAGTGTaGGGACATGGGATGCCAAGA | + |
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Preference number: 4 (lower is better) Translates to: MPDWGILHDLADRHQEALVGPVV*GHGMPR Trigger: TCTTGGCATCCCATGTCCCCACACTACAGGTCCTAC...TAAAGCTTCCTGGTGCCTGTCTGCCAGGTCATGGAGGATTCCCCAATCTGGCAT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000003156.15 ENSMUST00000105366.2 ENSMUST00000105367.8 |
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| 3UTR CAA 72 bp | TGGTTCCTGGTGTTTAATGGAGACAGGCTGGGTAAGTaGACGACGGTTCAGGTGGCTTTGAGGGGCAATCAA | + |
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Preference number: 4 (lower is better) Translates to: WFLVFNGDRLGK*TTVQVALRGNQ Trigger: TTGATTGCCCCTCAAAGCCACCTGAACCGTCGTCAACTTACCCAGCCTGTCTCCATTAAACACCAGGAACCA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000003156.15 ENSMUST00000105366.2 ENSMUST00000105367.8 |
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| CDS-3UTR CAA 90 bp | GGGAACTTCTCATCGGCCTGGACCTGGCTCAGTTTCCCCGTGGGTGTCAGACAGTGCGCCTTCTCCAGGTaGGCCCGGGCTGCCAAAGTA | + |
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Preference number: 5 (lower is better) Translates to: GNFSSAWTWLSFPVGVRQCAFSR*ARAAKV Trigger: TACTTTGGCAGCCCGGGCCAACCTGGAGAAGGCGCA...CTGTCTGACACCCACGGGGAAACTGAGCCAGGTCCAGGCCGATGAGAAGTTCCC 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000105366.2 |
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| CDS-3UTR CAA 90 bp | ACCCCTGGTGGCCACTTCAGCCCACTGGGAACTTCTCATCGGCCTGGACCTGGCGGCACGTCCACTTGCTaGACGTTGGCACTGTCAAAG | + |
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Preference number: 5 (lower is better) Translates to: TPGGHFSPLGTSHRPGPGGTSTC*TLALSK Trigger: CTTTGACAGTGCCAACGTCAAGCAAGTGGACGTGCC...GCCAGGTCCAGGCCGATGAGAAGTTCCCAGTGGGCTGAAGTGGCCACCAGGGGT 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000003156.15 ENSMUST00000105366.2 ENSMUST00000105367.8 |
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| CDS-3UTR CAA 90 bp | GCTGACCCCTGGTGGCCACTTCAGCCCACTGGGAACTTCTCATCGGCCTGGACCGGCACGTCCACTTGCTaGACGTTGGCACTGTCAAAG | + |
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Preference number: 5 (lower is better) Translates to: ADPWWPLQPTGNFSSAWTGTSTC*TLALSK Trigger: CTTTGACAGTGCCAACGTCAAGCAAGTGGACGTGCC...GGTCCAGGCCGATGAGAAGTTCCCAGTGGGCTGAAGTGGCCACCAGGGGTCAGC 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000003156.15 ENSMUST00000105366.2 ENSMUST00000105367.8 |
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| CDS TCA 90 bp | TGGCCCGGGCTGCCAAAGTACTTAGTCGTGGTGCCGTCTTCTGTGTaGACCACTACCAGCCCAGGCCGTAGGACCTGTAGTGTGGGGACA | + |
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Preference number: 5 (lower is better) Translates to: WPGLPKYLVVVPSSV*TTTSPGRRTCSVGT Trigger: TGTCCCCACACTACAGGTCCTACGGCCTGGGCTGGTAGTGGTTCACACAGAAGACGGCACCACGACTAAGTACTTTGGCAGCCCGGGCCA 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000105366.2 |
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| CDS-3UTR CAA 90 bp | CTCATCGGCCTGGACCTGGCTCAGTTTCCCCGTGGGTGTCAGACAGTAGGTACCGGCACGTCCACTTGCTaGACGTTGGCACTGTCAAAG | + |
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Preference number: 5 (lower is better) Translates to: LIGLDLAQFPRGCQTVGTGTSTC*TLALSK Trigger: CTTTGACAGTGCCAACGTCAAGCAAGTGGACGTGCC...GGTACCTACTGTCTGACACCCACGGGGAAACTGAGCCAGGTCCAGGCCGATGAG 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000003156.15 ENSMUST00000105366.2 ENSMUST00000105367.8 |
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| CDS-3UTR CAA 90 bp | CCTGGCAGACAGGCACCAGGAAGCTTTAAGCCCAGCAACTGGAGCACTGCTGACCGTAGGCACGTCCACTaGCTTGACGTTGGCACTGTC | + |
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Preference number: 5 (lower is better) Translates to: PGRQAPGSFKPSNWSTADRRHVH*LDVGTV Trigger: GACAGTGCCAACGTCAAGCAAGTGGACGTGCCTACG...GTCAGCAGTGCTCCAGTTGCTGGGCTTAAAGCTTCCTGGTGCCTGTCTGCCAGG 59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000003156.15 ENSMUST00000105366.2 ENSMUST00000105367.8 |
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| CDS TCA 90 bp | GAGCCGCTGCTCACAAAGTACTTAGTCGTGGTGCCGTCTTCTGTGTaGACCACTACCAGCCCAGGCCGTAGGACCTGTAGTGTGGGGACA | + |
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Preference number: 5 (lower is better) Translates to: EPLLTKYLVVVPSSV*TTTSPGRRTCSVGT Trigger: TGTCCCCACACTACAGGTCCTACGGCCTGGGCTGGTAGTGGTTCACACAGAAGACGGCACCACGACTAAGTACTTTGTGAGCAGCGGCTC 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000003156.15 ENSMUST00000105367.8 |
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| CDS GCA 90 bp | GATGCCAAGATGCCAAAGGCTCCAGTCAGCGTAGGCACGTCCACTTaGTTGACGTTGGCACTGTCAAAGAACACCTGCGTCGGGGAGGCA | + |
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Preference number: 5 (lower is better) Translates to: DAKMPKAPVSVGTST*LTLALSKNTCVGEA Trigger: TGCCTCCCCGACGCAGGTGTTCTTTGACAGTGCCAACGTCAAGCAAGTGGACGTGCCTACGCTGACTGGAGCCTTTGGCATCTTGGCATC 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000003156.15 ENSMUST00000105366.2 ENSMUST00000105367.8 |
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| CDS GCA 90 bp | CCCAGGTCCAGCATGTCCAGTGTCACAGCTTCTTCAGCTAGTAACTaGACAGAGGAGTCGGCATTCACAGTGACGGAGCCGCTGCTCACA | + |
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Preference number: 5 (lower is better) Translates to: PRSSMSSVTASSASN*TEESAFTVTEPLLT Trigger: TGTGAGCAGCGGCTCCGTCACTGTGAATGCCGACTCCTCTGTGCAGTTACTAGCTGAAGAAGCTGTGACACTGGACATGCTGGACCTGGG 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000003156.15 ENSMUST00000105367.8 |
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| CDS-3UTR CAA 90 bp | ATGCCAGATTGGGGAATCCTCCATGACCTGGCAGACAGGCACCAGGAAGCTTTACGTAGGCACGTCCACTaGCTTGACGTTGGCACTGTC | + |
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Preference number: 5 (lower is better) Translates to: MPDWGILHDLADRHQEALRRHVH*LDVGTV Trigger: GACAGTGCCAACGTCAAGCAAGTGGACGTGCCTACG...TAAAGCTTCCTGGTGCCTGTCTGCCAGGTCATGGAGGATTCCCCAATCTGGCAT 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000003156.15 ENSMUST00000105366.2 ENSMUST00000105367.8 |
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| CDS TCA 72 bp | CACTGTCAAAGAACACCTGCGTCGGGGAGGCAAAGGTaGAGGACATCTGTCCGGGCCCGGCGGCGGGGGCAG | + |
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Preference number: 6 (lower is better) Translates to: HCQRTPASGRQR*RTSVRARRRGQ Trigger: CTGCCCCCGCCGCCGGGCCCGGACAGATGTCCTTCACCTTTGCCTCCCCGACGCAGGTGTTCTTTGACAGTG 67% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 3 transcripts: ENSMUST00000003156.15 ENSMUST00000105366.2 ENSMUST00000105367.8 |
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| CDS CAA 90 bp | GCCTCGTCCGCCGCACCTGACAGTTCTGACTGCGCCTTCTCCAGGTaGGCCCGGGCTGCCAAAGTACTTAGTCGTGGTGCCGTCTTCTGT | + |
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Preference number: 6 (lower is better) Translates to: ASSAAPDSSDCAFSR*ARAAKVLSRGAVFC Trigger: ACAGAAGACGGCACCACGACTAAGTACTTTGGCAGCCCGGGCCAACCTGGAGAAGGCGCAGTCAGAACTGTCAGGTGCGGCGGACGAGGC 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000105366.2 |
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| CDS CAA 72 bp | GCCGCACCTGACAGTTCTGACTGCGCCTTCTCCAGGTaGGCCCGGGCTGCCAAAGTACTTAGTCGTGGTGCC | + |
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Preference number: 6 (lower is better) Translates to: AAPDSSDCAFSR*ARAAKVLSRGA Trigger: GGCACCACGACTAAGTACTTTGGCAGCCCGGGCCAACCTGGAGAAGGCGCAGTCAGAACTGTCAGGTGCGGC 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000105366.2 |
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| CDS CCA 72 bp | ACCAGCCCAGGCCGTAGGACCTGTAGTGTGGGGACATaGGATGCCAAGATGCCAAAGGCTCCAGTCAGCGTA | + |
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Preference number: 6 (lower is better) Translates to: TSPGRRTCSVGT*DAKMPKAPVSV Trigger: TACGCTGACTGGAGCCTTTGGCATCTTGGCATCCCATGTCCCCACACTACAGGTCCTACGGCCTGGGCTGGT 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000003156.15 ENSMUST00000105366.2 ENSMUST00000105367.8 |
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| CDS CAA 72 bp | GCTCCAGTCAGCGTAGGCACGTCCACTTGCTTGACGTaGGCACTGTCAAAGAACACCTGCGTCGGGGAGGCA | + |
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Preference number: 6 (lower is better) Translates to: APVSVGTSTCLT*ALSKNTCVGEA Trigger: TGCCTCCCCGACGCAGGTGTTCTTTGACAGTGCCAACGTCAAGCAAGTGGACGTGCCTACGCTGACTGGAGC 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000003156.15 ENSMUST00000105366.2 ENSMUST00000105367.8 |
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| CDS CAA 90 bp | GGATGCCAAGATGCCAAAGGCTCCAGTCAGCGTAGGCACGTCCACTaGCTTGACGTTGGCACTGTCAAAGAACACCTGCGTCGGGGAGGC | + |
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Preference number: 6 (lower is better) Translates to: GCQDAKGSSQRRHVH*LDVGTVKEHLRRGG Trigger: GCCTCCCCGACGCAGGTGTTCTTTGACAGTGCCAACGTCAAGCAAGTGGACGTGCCTACGCTGACTGGAGCCTTTGGCATCTTGGCATCC 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000003156.15 ENSMUST00000105366.2 ENSMUST00000105367.8 |
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| CDS CAA 90 bp | GCCAAGATGCCAAAGGCTCCAGTCAGCGTAGGCACGTCCACTTGCTaGACGTTGGCACTGTCAAAGAACACCTGCGTCGGGGAGGCAAAG | + |
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Preference number: 6 (lower is better) Translates to: AKMPKAPVSVGTSTC*TLALSKNTCVGEAK Trigger: CTTTGCCTCCCCGACGCAGGTGTTCTTTGACAGTGCCAACGTCAAGCAAGTGGACGTGCCTACGCTGACTGGAGCCTTTGGCATCTTGGC 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000003156.15 ENSMUST00000105366.2 ENSMUST00000105367.8 |
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| CDS CAA 72 bp | CCAAAGGCTCCAGTCAGCGTAGGCACGTCCACTTGCTaGACGTTGGCACTGTCAAAGAACACCTGCGTCGGG | + |
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Preference number: 6 (lower is better) Translates to: PKAPVSVGTSTC*TLALSKNTCVG Trigger: CCCGACGCAGGTGTTCTTTGACAGTGCCAACGTCAAGCAAGTGGACGTGCCTACGCTGACTGGAGCCTTTGG 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000003156.15 ENSMUST00000105366.2 ENSMUST00000105367.8 |
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| CDS CAA 90 bp | ATGCCAAAGGCTCCAGTCAGCGTAGGCACGTCCACTTGCTTGACGTaGGCACTGTCAAAGAACACCTGCGTCGGGGAGGCAAAGGTGAAG | + |
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Preference number: 6 (lower is better) Translates to: MPKAPVSVGTSTCLT*ALSKNTCVGEAKVK Trigger: CTTCACCTTTGCCTCCCCGACGCAGGTGTTCTTTGACAGTGCCAACGTCAAGCAAGTGGACGTGCCTACGCTGACTGGAGCCTTTGGCAT 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000003156.15 ENSMUST00000105366.2 ENSMUST00000105367.8 |
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| CDS TCA 72 bp | CTGCCAAAGTACTTAGTCGTGGTGCCGTCTTCTGTGTaGACCACTACCAGCCCAGGCCGTAGGACCTGTAGT | + |
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Preference number: 6 (lower is better) Translates to: LPKYLVVVPSSV*TTTSPGRRTCS Trigger: ACTACAGGTCCTACGGCCTGGGCTGGTAGTGGTTCACACAGAAGACGGCACCACGACTAAGTACTTTGGCAG 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000105366.2 |
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| CDS GCA 72 bp | ATGCCAAAGGCTCCAGTCAGCGTAGGCACGTCCACTTaGTTGACGTTGGCACTGTCAAAGAACACCTGCGTC | + |
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Preference number: 6 (lower is better) Translates to: MPKAPVSVGTST*LTLALSKNTCV Trigger: GACGCAGGTGTTCTTTGACAGTGCCAACGTCAAGCAAGTGGACGTGCCTACGCTGACTGGAGCCTTTGGCAT 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000003156.15 ENSMUST00000105366.2 ENSMUST00000105367.8 |
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| CDS CAA 72 bp | GATGCCAAAGGCTCCAGTCAGCGTAGGCACGTCCACTaGCTTGACGTTGGCACTGTCAAAGAACACCTGCGT | + |
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Preference number: 6 (lower is better) Translates to: DAKGSSQRRHVH*LDVGTVKEHLR Trigger: ACGCAGGTGTTCTTTGACAGTGCCAACGTCAAGCAAGTGGACGTGCCTACGCTGACTGGAGCCTTTGGCATC 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000003156.15 ENSMUST00000105366.2 ENSMUST00000105367.8 |
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| CDS TCA 72 bp | CTCACAAAGTACTTAGTCGTGGTGCCGTCTTCTGTGTaGACCACTACCAGCCCAGGCCGTAGGACCTGTAGT | + |
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Preference number: 6 (lower is better) Translates to: LTKYLVVVPSSV*TTTSPGRRTCS Trigger: ACTACAGGTCCTACGGCCTGGGCTGGTAGTGGTTCACACAGAAGACGGCACCACGACTAAGTACTTTGTGAG 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000003156.15 ENSMUST00000105367.8 |
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