RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for ATP2A2 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000029467

Ensembl transcript IDs: ENSMUST00000031423.10, ENSMUST00000177974.8, ENSMUST00000179939.8

Found 305 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR TCA 90 bp GTTAGAGAGGCTATGACATTTTGCAGAGAAATGTGGAGACTTGGCTaGTGGCTTCTGTTCTTGGATAAGGTTTCAGAACCTCCTTCTCGC +
Preference number: 1 (lower is better)
Translates to: VREAMTFCREMWRLG*WLLFLDKVSEPPSR
Trigger: GCGAGAAGGAGGTTCTGAAACCTTATCCAAGAACAGAAGCCATCAGCCAAGTCTCCACATTTCTCTGCAAAATGTCATAGCCTCTCTAAC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000177974.8
ENSMUST00000179939.8
3UTR GCA 90 bp GTTGCTAACAACGCACATGCACGCACCCGAACACCCTTATATTTCTaGAAATGGTTTAGGAAGCGGTTACTCCAGTATTGGTTAGTTGAT +
Preference number: 1 (lower is better)
Translates to: VANNAHARTRTPLYF*KWFRKRLLQYWLVD
Trigger: ATCAACTAACCAATACTGGAGTAACCGCTTCCTAAACCATTTGCAGAAATATAAGGGTGTTCGGGTGCGTGCATGTGCGTTGTTAGCAAC
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000179939.8
3UTR CCA 90 bp CATTTTGCAGAGAAATGTGGAGACTTGGCTGATGGCTTCTGTTCTTaGATAAGGTTTCAGAACCTCCTTCTCGCAGCAAAGAAACCAACT +
Preference number: 1 (lower is better)
Translates to: HFAEKCGDLADGFCS*IRFQNLLLAAKKPT
Trigger: AGTTGGTTTCTTTGCTGCGAGAAGGAGGTTCTGAAACCTTATCCAAGAACAGAAGCCATCAGCCAAGTCTCCACATTTCTCTGCAAAATG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000177974.8
ENSMUST00000179939.8
3UTR TCA 90 bp TACCTGAAATCATGTCTGTGCAATACCTGTTACCAGCACAGAAACTaGCCTCTATTTACAGACTACAGTCAAACATGCGCTGTGAGAAGC +
Preference number: 1 (lower is better)
Translates to: YLKSCLCNTCYQHRN*PLFTDYSQTCAVRS
Trigger: GCTTCTCACAGCGCATGTTTGACTGTAGTCTGTAAATAGAGGTCAGTTTCTGTGCTGGTAACAGGTATTGCACAGACATGATTTCAGGTA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000177974.8
ENSMUST00000179939.8
3UTR TCA 90 bp CAACTGAAGGCATGCATTACAATTATCATACAGTTAGAGAGGCTATaGCATTTTGCAGAGAAATGTGGAGACTTGGCTGATGGCTTCTGT +
Preference number: 1 (lower is better)
Translates to: QLKACITIIIQLERL*HFAEKCGDLADGFC
Trigger: ACAGAAGCCATCAGCCAAGTCTCCACATTTCTCTGCAAAATGTCATAGCCTCTCTAACTGTATGATAATTGTAATGCATGCCTTCAGTTG
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000177974.8
ENSMUST00000179939.8
3UTR CCA 90 bp CAGGGCCCATTAGAAAGCATGTTTCAATGTCACTGTAGAGCAATCTaGCCACTTACAACTGAAGGCATGCATTACAATTATCATACAGTT +
Preference number: 1 (lower is better)
Translates to: QGPLESMFQCHCRAI*PLTTEGMHYNYHTV
Trigger: AACTGTATGATAATTGTAATGCATGCCTTCAGTTGTAAGTGGCCAGATTGCTCTACAGTGACATTGAAACATGCTTTCTAATGGGCCCTG
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000177974.8
ENSMUST00000179939.8
3UTR TCA 90 bp CCTCCTTCTCGCAGCAAAGAAACCAACTTCTCTGGAGAGGCTCTCTaGTTTGTTATGCTAAATTGTACATTTGTTATTATTTTGATTGAA +
Preference number: 1 (lower is better)
Translates to: PPSRSKETNFSGEAL*FVMLNCTFVIILIE
Trigger: TTCAATCAAAATAATAACAAATGTACAATTTAGCATAACAAATCAGAGAGCCTCTCCAGAGAAGTTGGTTTCTTTGCTGCGAGAAGGAGG
37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000177974.8
ENSMUST00000179939.8
3UTR-3UTR TCA 90 bp ACCTCTCGTGAAGACGGATGTAAACAGAACCATCAGACCTACAGAAGAAGCCGAACCAAAAATACTGACTaGGGTAGCAGGACTCTGCTC +
Preference number: 2 (lower is better)
Translates to: TSREDGCKQNHQTYRRSRTKNTD*GSRTLL
Trigger: GAGCAGAGTCCTGCTACCTCAGTCAGTATTTTTGGT...TCGGCTTCTTCTGTAGGTCTGATGGTTCTGTTTACATCCGTCTTCACGAGAGGT
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000031423.10
ENSMUST00000179939.8
3UTR-3UTR TCA 90 bp TGGCTTCTGTTCTTGGATAAGGTTTCAGAACCTCCTTCTCGCAGCAAAGAAACCCTCCACATCACACAGTaGGTTGGGGACTGTTTCTAT +
Preference number: 2 (lower is better)
Translates to: WLLFLDKVSEPPSRSKETLHITQ*VGDCFY
Trigger: ATAGAAACAGTCCCCAACTCACTGTGTGATGTGGAG...GGTTTCTTTGCTGCGAGAAGGAGGTTCTGAAACCTTATCCAAGAACAGAAGCCA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000177974.8
ENSMUST00000179939.8
3UTR CAA 90 bp AAGCGGTTACTCCAGTATTGGTTAGTTGATGGATGTTGGAAGGCATaGGAGGAAAACACCACAGTTAGGACTGTTAATGACTCACACTGC +
Preference number: 2 (lower is better)
Translates to: KRLLQYWLVDGCWKA*EENTTVRTVNDSHC
Trigger: GCAGTGTGAGTCATTAACAGTCCTAACTGTGGTGTTTTCCTCCAATGCCTTCCAACATCCATCAACTAACCAATACTGGAGTAACCGCTT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000179939.8
3UTR-3UTR CCA 90 bp GTCTGTGCAATACCTGTTACCAGCACAGAAACTGACCTCTATTTACAGACTACAAACGTTCATCAGTCATaGTGGTGGTGGTTAGTGCCA +
Preference number: 2 (lower is better)
Translates to: VCAIPVTSTETDLYLQTTNVHQS*WWWLVP
Trigger: TGGCACTAACCACCACCACCATGACTGATGAACGTT...TGTAGTCTGTAAATAGAGGTCAGTTTCTGTGCTGGTAACAGGTATTGCACAGAC
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000179939.8
3UTR-3UTR CCA 90 bp GAAAGCATGTTTCAATGTCACTGTAGAGCAATCTGGCCACTTACAACTGAAGGCGATGTTGGAAGGCATTaGAGGAAAACACCACAGTTA +
Preference number: 2 (lower is better)
Translates to: ESMFQCHCRAIWPLTTEGDVGRH*RKTPQL
Trigger: TAACTGTGGTGTTTTCCTCCAATGCCTTCCAACATC...GCCTTCAGTTGTAAGTGGCCAGATTGCTCTACAGTGACATTGAAACATGCTTTC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000179939.8
3UTR-3UTR TCA 90 bp CTCCTTCTCGCAGCAAAGAAACCAACTTCTCTGGAGAGGCTCTCTGATTTGTTAGTAATGTATATCACATaGCAGATCGTGCCTATACAT +
Preference number: 2 (lower is better)
Translates to: LLLAAKKPTSLERLSDLLVMYIT*QIVPIH
Trigger: ATGTATAGGCACGATCTGTCATGTGATATACATTAC...TAACAAATCAGAGAGCCTCTCCAGAGAAGTTGGTTTCTTTGCTGCGAGAAGGAG
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000179939.8
3UTR-3UTR GCA 90 bp GTCTGTGCAATACCTGTTACCAGCACAGAAACTGACCTCTATTTACAGACTACAACACCCTTATATTTCTaGAAATGGTTTAGGAAGCGG +
Preference number: 2 (lower is better)
Translates to: VCAIPVTSTETDLYLQTTTPLYF*KWFRKR
Trigger: CCGCTTCCTAAACCATTTGCAGAAATATAAGGGTGT...TGTAGTCTGTAAATAGAGGTCAGTTTCTGTGCTGGTAACAGGTATTGCACAGAC
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000177974.8
ENSMUST00000179939.8
3UTR-3UTR TCA 90 bp TGTGCTATTTACAGATTTTACAAAACATACACACACATAAACACACACTTGCCCACCAAAAATACTGACTaGGGTAGCAGGACTCTGCTC +
Preference number: 2 (lower is better)
Translates to: CAIYRFYKTYTHINTHLPTKNTD*GSRTLL
Trigger: GAGCAGAGTCCTGCTACCTCAGTCAGTATTTTTGGT...GGGCAAGTGTGTGTTTATGTGTGTGTATGTTTTGTAAAATCTGTAAATAGCACA
40% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000179939.8
3UTR GCA 72 bp AACGCACATGCACGCACCCGAACACCCTTATATTTCTaGAAATGGTTTAGGAAGCGGTTACTCCAGTATTGG +
Preference number: 3 (lower is better)
Translates to: NAHARTRTPLYF*KWFRKRLLQYW
Trigger: CCAATACTGGAGTAACCGCTTCCTAAACCATTTGCAGAAATATAAGGGTGTTCGGGTGCGTGCATGTGCGTT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000179939.8
3UTR TCA 72 bp TACAGACTACAGTCAAACATGCGCTGTGAGAAGCTGTaGGCAACTGAACTGACGCTGAGCACTTTATTACGA +
Preference number: 3 (lower is better)
Translates to: YRLQSNMRCEKL*ATELTLSTLLR
Trigger: TCGTAATAAAGTGCTCAGCGTCAGTTCAGTTGCTCACAGCTTCTCACAGCGCATGTTTGACTGTAGTCTGTA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000177974.8
ENSMUST00000179939.8
3UTR TCA 72 bp GCTATGACATTTTGCAGAGAAATGTGGAGACTTGGCTaGTGGCTTCTGTTCTTGGATAAGGTTTCAGAACCT +
Preference number: 3 (lower is better)
Translates to: AMTFCREMWRLG*WLLFLDKVSEP
Trigger: AGGTTCTGAAACCTTATCCAAGAACAGAAGCCATCAGCCAAGTCTCCACATTTCTCTGCAAAATGTCATAGC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000177974.8
ENSMUST00000179939.8
3UTR TCA 72 bp TCATGTCTGTGCAATACCTGTTACCAGCACAGAAACTaGCCTCTATTTACAGACTACAGTCAAACATGCGCT +
Preference number: 3 (lower is better)
Translates to: SCLCNTCYQHRN*PLFTDYSQTCA
Trigger: AGCGCATGTTTGACTGTAGTCTGTAAATAGAGGTCAGTTTCTGTGCTGGTAACAGGTATTGCACAGACATGA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000177974.8
ENSMUST00000179939.8
3UTR CCA 72 bp AGAACCTCCTTCTCGCAGCAAAGAAACCAACTTCTCTaGAGAGGCTCTCTGATTTGTTATGCTAAATTGTAC +
Preference number: 3 (lower is better)
Translates to: RTSFSQQRNQLL*RGSLICYAKLY
Trigger: GTACAATTTAGCATAACAAATCAGAGAGCCTCTCCAGAGAAGTTGGTTTCTTTGCTGCGAGAAGGAGGTTCT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000177974.8
ENSMUST00000179939.8
3UTR-3UTR CAA 90 bp GAAAGCATGTTTCAATGTCACTGTAGAGCAATCTGGCCACTTACAACTGAAGGCACATCACACAGTGAGTaGGGGACTGTTTCTATTTTT +
Preference number: 3 (lower is better)
Translates to: ESMFQCHCRAIWPLTTEGTSHSE*GTVSIF
Trigger: AAAAATAGAAACAGTCCCCAACTCACTGTGTGATGT...GCCTTCAGTTGTAAGTGGCCAGATTGCTCTACAGTGACATTGAAACATGCTTTC
42% GC, longest homopolymer 5 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000177974.8
ENSMUST00000179939.8
3UTR TCA 72 bp GGACTCTTCTCAGAACAGGAAACTAAGGCTCTAAGCTaGGAAGCTCAGAAATTTGAACTGATTATACGTAAT +
Preference number: 3 (lower is better)
Translates to: GLFSEQETKALS*EAQKFELIIRN
Trigger: ATTACGTATAATCAGTTCAAATTTCTGAGCTTCTCAGCTTAGAGCCTTAGTTTCCTGTTCTGAGAAGAGTCC
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000179939.8
3UTR TCA 72 bp GCATGCATTACAATTATCATACAGTTAGAGAGGCTATaGCATTTTGCAGAGAAATGTGGAGACTTGGCTGAT +
Preference number: 3 (lower is better)
Translates to: ACITIIIQLERL*HFAEKCGDLAD
Trigger: ATCAGCCAAGTCTCCACATTTCTCTGCAAAATGTCATAGCCTCTCTAACTGTATGATAATTGTAATGCATGC
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000177974.8
ENSMUST00000179939.8
3UTR CCA 72 bp TTAGAAAGCATGTTTCAATGTCACTGTAGAGCAATCTaGCCACTTACAACTGAAGGCATGCATTACAATTAT +
Preference number: 3 (lower is better)
Translates to: LESMFQCHCRAI*PLTTEGMHYNY
Trigger: ATAATTGTAATGCATGCCTTCAGTTGTAAGTGGCCAGATTGCTCTACAGTGACATTGAAACATGCTTTCTAA
38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000177974.8
ENSMUST00000179939.8
3UTR TCA 72 bp CGCAGCAAAGAAACCAACTTCTCTGGAGAGGCTCTCTaGTTTGTTATGCTAAATTGTACATTTGTTATTATT +
Preference number: 3 (lower is better)
Translates to: RSKETNFSGEAL*FVMLNCTFVII
Trigger: AATAATAACAAATGTACAATTTAGCATAACAAATCAGAGAGCCTCTCCAGAGAAGTTGGTTTCTTTGCTGCG
36% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000177974.8
ENSMUST00000179939.8
3UTR GCA 72 bp GCACTTTATTACGATAAATGCACACAATACTTGTATTaGACCAACATCTGTCTACTGCTTCTGACTTCATTA +
Preference number: 3 (lower is better)
Translates to: ALYYDKCTQYLY*TNICLLLLTSL
Trigger: TAATGAAGTCAGAAGCAGTAGACAGATGTTGGTGCAATACAAGTATTGTGTGCATTTATCGTAATAAAGTGC
36% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000177974.8
ENSMUST00000179939.8
CDS-3UTR TCA 90 bp CTCGTGAAGACGGATGTAAACAGAACCATCAGACCTACAGAAGAAGCCGAGCAGGCCCCGTGCTCTCGTTaGCCCCGAAGTGGCCCAGCA +
Preference number: 4 (lower is better)
Translates to: LVKTDVNRTIRPTEEAEQAPCSR*PRSGPA
Trigger: TGCTGGGCCACTTCGGGGTCAACGAGAGCACGGGGC...CTGCTCGGCTTCTTCTGTAGGTCTGATGGTTCTGTTTACATCCGTCTTCACGAG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000031423.10
ENSMUST00000179939.8
CDS-3UTR TCA 90 bp ACCTCCTTCTCGCAGCAAAGAAACCAACTTCTCTGGAGAGGCTCTCTGATTTGTGCCCCGTGCTCTCGTTaGCCCCGAAGTGGCCCAGCA +
Preference number: 4 (lower is better)
Translates to: TSFSQQRNQLLWRGSLICAPCSR*PRSGPA
Trigger: TGCTGGGCCACTTCGGGGTCAACGAGAGCACGGGGC...ACAAATCAGAGAGCCTCTCCAGAGAAGTTGGTTTCTTTGCTGCGAGAAGGAGGT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000177974.8
ENSMUST00000179939.8
CDS-3UTR TCA 90 bp GAAGACGGATGTAAACAGAACCATCAGACCTACAGAAGAAGCCGAGCAGGCTGGCGCCGTCAGCAGCGATaGACCACCATGCAGCAGCAC +
Preference number: 4 (lower is better)
Translates to: EDGCKQNHQTYRRSRAGWRRQQR*TTMQQH
Trigger: GTGCTGCTGCATGGTGGTTCATCGCTGCTGACGGCG...CCAGCCTGCTCGGCTTCTTCTGTAGGTCTGATGGTTCTGTTTACATCCGTCTTC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000031423.10
ENSMUST00000179939.8
3UTR CAA 72 bp CCCCAACCTCAGTCATGCAGAGGGCTGGTAGATGTGTaGCTAACAACGCACATGCACGCACCCGAACACCCT +
Preference number: 4 (lower is better)
Translates to: PQPQSCRGLVDV*LTTHMHAPEHP
Trigger: AGGGTGTTCGGGTGCGTGCATGTGCGTTGTTAGCAACACATCTACCAGCCCTCTGCATGACTGAGGTTGGGG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000177974.8
ENSMUST00000179939.8
CDS-3UTR GCA 90 bp GAAGACGGATGTAAACAGAACCATCAGACCTACAGAAGAAGCCGAGCAGGCTGGGATGACCCGGATGCCTaGTTGCCGGCACAGCTTCAC +
Preference number: 4 (lower is better)
Translates to: EDGCKQNHQTYRRSRAGWDDPDA*LPAQLH
Trigger: GTGAAGCTGTGCCGGCAAGCAGGCATCCGGGTCATC...CCAGCCTGCTCGGCTTCTTCTGTAGGTCTGATGGTTCTGTTTACATCCGTCTTC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000031423.10
ENSMUST00000179939.8
CDS-3UTR GCA 90 bp TCTCGTGAAGACGGATGTAAACAGAACCATCAGACCTACAGAAGAAGCCGAGCACAGACCCTCAGGGATTaGGGCAACAGCCAGGGCCAC +
Preference number: 4 (lower is better)
Translates to: SREDGCKQNHQTYRRSRAQTLRD*GNSQGH
Trigger: GTGGCCCTGGCTGTTGCCGCAATCCCTGAGGGTCTG...TGCTCGGCTTCTTCTGTAGGTCTGATGGTTCTGTTTACATCCGTCTTCACGAGA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000031423.10
ENSMUST00000179939.8
CDS-3UTR GCA 90 bp CTCGTGAAGACGGATGTAAACAGAACCATCAGACCTACAGAAGAAGCCGAGCAGAGCGATGAACCACCATaGAGCAGCACCCACGGTGGC +
Preference number: 4 (lower is better)
Translates to: LVKTDVNRTIRPTEEAEQSDEPP*SSTHGG
Trigger: GCCACCGTGGGTGCTGCTGCATGGTGGTTCATCGCT...CTGCTCGGCTTCTTCTGTAGGTCTGATGGTTCTGTTTACATCCGTCTTCACGAG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000031423.10
ENSMUST00000179939.8
CDS-3UTR CCA 90 bp GAAGACGGATGTAAACAGAACCATCAGACCTACAGAAGAAGCCGAGCAGGCTGGCCACCCGCTGATCAGTaGTTCTTTTGGGTTCCGGGG +
Preference number: 4 (lower is better)
Translates to: EDGCKQNHQTYRRSRAGWPPADQ*FFWVPG
Trigger: CCCCGGAACCCAAAAGAACCACTGATCAGCGGGTGG...CCAGCCTGCTCGGCTTCTTCTGTAGGTCTGATGGTTCTGTTTACATCCGTCTTC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000031423.10
ENSMUST00000179939.8
CDS-3UTR CCA 90 bp CTCGTGAAGACGGATGTAAACAGAACCATCAGACCTACAGAAGAAGCCGAGCAGCAGCAGCACCCACGGTaGCAGCGCCAACATAACAGC +
Preference number: 4 (lower is better)
Translates to: LVKTDVNRTIRPTEEAEQQQHPR*QRQHNS
Trigger: GCTGTTATGTTGGCGCTGCCACCGTGGGTGCTGCTG...CTGCTCGGCTTCTTCTGTAGGTCTGATGGTTCTGTTTACATCCGTCTTCACGAG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000031423.10
ENSMUST00000179939.8
CDS-3UTR GCA 90 bp CTCGTGAAGACGGATGTAAACAGAACCATCAGACCTACAGAAGAAGCCGAGCAGACCCGGATGCCTGCTTaGCGGCACAGCTTCACAGAA +
Preference number: 4 (lower is better)
Translates to: LVKTDVNRTIRPTEEAEQTRMPA*RHSFTE
Trigger: TTCTGTGAAGCTGTGCCGGCAAGCAGGCATCCGGGT...CTGCTCGGCTTCTTCTGTAGGTCTGATGGTTCTGTTTACATCCGTCTTCACGAG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000031423.10
ENSMUST00000179939.8
CDS-3UTR GCA 90 bp ACCTCCTTCTCGCAGCAAAGAAACCAACTTCTCTGGAGAGGCTCTCTGATTTGTGATGACCCGGATGCCTaGTTGCCGGCACAGCTTCAC +
Preference number: 4 (lower is better)
Translates to: TSFSQQRNQLLWRGSLICDDPDA*LPAQLH
Trigger: GTGAAGCTGTGCCGGCAAGCAGGCATCCGGGTCATC...ACAAATCAGAGAGCCTCTCCAGAGAAGTTGGTTTCTTTGCTGCGAGAAGGAGGT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000177974.8
ENSMUST00000179939.8
CDS-3UTR CCA 90 bp GAAGACGGATGTAAACAGAACCATCAGACCTACAGAAGAAGCCGAGCAGGCTGGGTAGAAGGAGACTCTTaGACCGCCGTCAGCAGCGAT +
Preference number: 4 (lower is better)
Translates to: EDGCKQNHQTYRRSRAGWVEGDS*TAVSSD
Trigger: ATCGCTGCTGACGGCGGTCCAAGAGTCTCCTTCTAC...CCAGCCTGCTCGGCTTCTTCTGTAGGTCTGATGGTTCTGTTTACATCCGTCTTC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000031423.10
ENSMUST00000179939.8
CDS-3UTR TCA 90 bp ACCTCTCGTGAAGACGGATGTAAACAGAACCATCAGACCTACAGAAGAAGCCGATTCAGTGGGTTGTCATaGGTGGCCAGAGCCAGGCAC +
Preference number: 4 (lower is better)
Translates to: TSREDGCKQNHQTYRRSRFSGLS*VARARH
Trigger: GTGCCTGGCTCTGGCCACTCATGACAACCCACTGAA...TCGGCTTCTTCTGTAGGTCTGATGGTTCTGTTTACATCCGTCTTCACGAGAGGT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000031423.10
ENSMUST00000179939.8
CDS-3UTR GCA 90 bp ACCTCTCGTGAAGACGGATGTAAACAGAACCATCAGACCTACAGAAGAAGCCGAACCCGGATGCCTGCTTaGCGGCACAGCTTCACAGAA +
Preference number: 4 (lower is better)
Translates to: TSREDGCKQNHQTYRRSRTRMPA*RHSFTE
Trigger: TTCTGTGAAGCTGTGCCGGCAAGCAGGCATCCGGGT...TCGGCTTCTTCTGTAGGTCTGATGGTTCTGTTTACATCCGTCTTCACGAGAGGT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000031423.10
ENSMUST00000179939.8
CDS-3UTR GCA 90 bp TGGCTTCTGTTCTTGGATAAGGTTTCAGAACCTCCTTCTCGCAGCAAAGAAACCAGCGATGAACCACCATaGAGCAGCACCCACGGTGGC +
Preference number: 4 (lower is better)
Translates to: WLLFLDKVSEPPSRSKETSDEPP*SSTHGG
Trigger: GCCACCGTGGGTGCTGCTGCATGGTGGTTCATCGCT...GGTTTCTTTGCTGCGAGAAGGAGGTTCTGAAACCTTATCCAAGAACAGAAGCCA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000177974.8
ENSMUST00000179939.8
CDS-3UTR CCA 90 bp TCTCGTGAAGACGGATGTAAACAGAACCATCAGACCTACAGAAGAAGCCGAGCACAATGCGGCGACAGATaGCCACAGCGGTGCCTTTGT +
Preference number: 4 (lower is better)
Translates to: SREDGCKQNHQTYRRSRAQCGDR*PQRCLC
Trigger: ACAAAGGCACCGCTGTGGCCATCTGTCGCCGCATTG...TGCTCGGCTTCTTCTGTAGGTCTGATGGTTCTGTTTACATCCGTCTTCACGAGA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000031423.10
ENSMUST00000179939.8
CDS-3UTR CCA 90 bp ACCTCTCGTGAAGACGGATGTAAACAGAACCATCAGACCTACAGAAGAAGCCGACAATGCGGCGACAGATaGCCACAGCGGTGCCTTTGT +
Preference number: 4 (lower is better)
Translates to: TSREDGCKQNHQTYRRSRQCGDR*PQRCLC
Trigger: ACAAAGGCACCGCTGTGGCCATCTGTCGCCGCATTG...TCGGCTTCTTCTGTAGGTCTGATGGTTCTGTTTACATCCGTCTTCACGAGAGGT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000031423.10
ENSMUST00000179939.8
CDS-3UTR CCA 90 bp ACCTCTCGTGAAGACGGATGTAAACAGAACCATCAGACCTACAGAAGAAGCCGACCACCCGCTGATCAGTaGTTCTTTTGGGTTCCGGGG +
Preference number: 4 (lower is better)
Translates to: TSREDGCKQNHQTYRRSRPPADQ*FFWVPG
Trigger: CCCCGGAACCCAAAAGAACCACTGATCAGCGGGTGG...TCGGCTTCTTCTGTAGGTCTGATGGTTCTGTTTACATCCGTCTTCACGAGAGGT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000031423.10
ENSMUST00000179939.8
CDS-3UTR GCA 90 bp TCTCGTGAAGACGGATGTAAACAGAACCATCAGACCTACAGAAGAAGCCGAGCATTGAGCTTCTTGACCTaGTCCAAGCTCAGCCCCGTG +
Preference number: 4 (lower is better)
Translates to: SREDGCKQNHQTYRRSRALSFLT*SKLSPV
Trigger: CACGGGGCTGAGCTTGGAGCAGGTCAAGAAGCTCAA...TGCTCGGCTTCTTCTGTAGGTCTGATGGTTCTGTTTACATCCGTCTTCACGAGA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000031423.10
ENSMUST00000179939.8
CDS-3UTR GCA 90 bp AAACCTCTCGTGAAGACGGATGTAAACAGAACCATCAGACCTACAGAAGAAGCCTGGGAGGATCCAGCATaGCCACACAGCCGACGAAAG +
Preference number: 4 (lower is better)
Translates to: KPLVKTDVNRTIRPTEEAWEDPA*PHSRRK
Trigger: CTTTCGTCGGCTGTGTGGGCATGCTGGATCCTCCCA...GGCTTCTTCTGTAGGTCTGATGGTTCTGTTTACATCCGTCTTCACGAGAGGTTT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000031423.10
ENSMUST00000179939.8
CDS-3UTR GCA 90 bp GCACAGAAACTGACCTCTATTTACAGACTACAGTCAAACATGCGCTGTGAGAAGGATGACCCGGATGCCTaGTTGCCGGCACAGCTTCAC +
Preference number: 4 (lower is better)
Translates to: AQKLTSIYRLQSNMRCEKDDPDA*LPAQLH
Trigger: GTGAAGCTGTGCCGGCAAGCAGGCATCCGGGTCATC...CTTCTCACAGCGCATGTTTGACTGTAGTCTGTAAATAGAGGTCAGTTTCTGTGC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000177974.8
ENSMUST00000179939.8
CDS-3UTR GCA 90 bp TCTCGTGAAGACGGATGTAAACAGAACCATCAGACCTACAGAAGAAGCCGAGCACATCCTGCCCAAAGATaGCAATGCGGCGACAGATGG +
Preference number: 4 (lower is better)
Translates to: SREDGCKQNHQTYRRSRAHPAQR*QCGDRW
Trigger: CCATCTGTCGCCGCATTGGCATCTTTGGGCAGGATG...TGCTCGGCTTCTTCTGTAGGTCTGATGGTTCTGTTTACATCCGTCTTCACGAGA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000031423.10
ENSMUST00000179939.8
CDS-3UTR GCA 90 bp ACCTCCTTCTCGCAGCAAAGAAACCAACTTCTCTGGAGAGGCTCTCTGATTTGTCATCCTGCCCAAAGATaGCAATGCGGCGACAGATGG +
Preference number: 4 (lower is better)
Translates to: TSFSQQRNQLLWRGSLICHPAQR*QCGDRW
Trigger: CCATCTGTCGCCGCATTGGCATCTTTGGGCAGGATG...ACAAATCAGAGAGCCTCTCCAGAGAAGTTGGTTTCTTTGCTGCGAGAAGGAGGT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000177974.8
ENSMUST00000179939.8
CDS-3UTR CCA 90 bp GAAGACGGATGTAAACAGAACCATCAGACCTACAGAAGAAGCCGAGCAGGCTGGACAGAGCACAGATGGTaGCTAACTCTACAAGCCCGT +
Preference number: 4 (lower is better)
Translates to: EDGCKQNHQTYRRSRAGWTEHRW*LTLQAR
Trigger: ACGGGCTTGTAGAGTTAGCCACCATCTGTGCTCTGT...CCAGCCTGCTCGGCTTCTTCTGTAGGTCTGATGGTTCTGTTTACATCCGTCTTC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000031423.10
ENSMUST00000179939.8
CDS-3UTR CCA 90 bp AAACCTCTCGTGAAGACGGATGTAAACAGAACCATCAGACCTACAGAAGAAGCCGTGGGTTGTCATGAGTaGCCAGAGCCAGGCACCGTA +
Preference number: 4 (lower is better)
Translates to: KPLVKTDVNRTIRPTEEAVGCHE*PEPGTV
Trigger: TACGGTGCCTGGCTCTGGCCACTCATGACAACCCAC...GGCTTCTTCTGTAGGTCTGATGGTTCTGTTTACATCCGTCTTCACGAGAGGTTT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000031423.10
ENSMUST00000179939.8
CDS-3UTR CCA 90 bp GTAGATGTGTTGCTAACAACGCACATGCACGCACCCGAACACCCTTATATTTCTGTGGGTTGTCATGAGTaGCCAGAGCCAGGCACCGTA +
Preference number: 4 (lower is better)
Translates to: VDVLLTTHMHAPEHPYISVGCHE*PEPGTV
Trigger: TACGGTGCCTGGCTCTGGCCACTCATGACAACCCAC...AGAAATATAAGGGTGTTCGGGTGCGTGCATGTGCGTTGTTAGCAACACATCTAC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000177974.8
ENSMUST00000179939.8
CDS-3UTR CCA 90 bp GCAGAGAAATGTGGAGACTTGGCTGATGGCTTCTGTTCTTGGATAAGGTTTCAGGTGGGTTGTCATGAGTaGCCAGAGCCAGGCACCGTA +
Preference number: 4 (lower is better)
Translates to: AEKCGDLADGFCSWIRFQVGCHE*PEPGTV
Trigger: TACGGTGCCTGGCTCTGGCCACTCATGACAACCCAC...CTGAAACCTTATCCAAGAACAGAAGCCATCAGCCAAGTCTCCACATTTCTCTGC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000177974.8
ENSMUST00000179939.8
CDS-3UTR CCA 90 bp CCTCTCGTGAAGACGGATGTAAACAGAACCATCAGACCTACAGAAGAAGCCGAGCTCCTCTCTCTTCAGTaGGTTGTCATGAGTGGCCAG +
Preference number: 4 (lower is better)
Translates to: PLVKTDVNRTIRPTEEAELLSLQ*VVMSGQ
Trigger: CTGGCCACTCATGACAACCCACTGAAGAGAGAGGAG...CTCGGCTTCTTCTGTAGGTCTGATGGTTCTGTTTACATCCGTCTTCACGAGAGG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000031423.10
ENSMUST00000179939.8
CDS-3UTR CCA 90 bp CTCGTGAAGACGGATGTAAACAGAACCATCAGACCTACAGAAGAAGCCGAGCAGAGGCTACTTCAATCCTaGGAGGATCCAGCATGCCCA +
Preference number: 4 (lower is better)
Translates to: LVKTDVNRTIRPTEEAEQRLLQS*EDPACP
Trigger: TGGGCATGCTGGATCCTCCCAGGATTGAAGTAGCCT...CTGCTCGGCTTCTTCTGTAGGTCTGATGGTTCTGTTTACATCCGTCTTCACGAG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000031423.10
ENSMUST00000179939.8
CDS-3UTR CCA 90 bp GAAAGCATGTTTCAATGTCACTGTAGAGCAATCTGGCCACTTACAACTGAAGGCCAGCAGCACCCACGGTaGCAGCGCCAACATAACAGC +
Preference number: 4 (lower is better)
Translates to: ESMFQCHCRAIWPLTTEGQQHPR*QRQHNS
Trigger: GCTGTTATGTTGGCGCTGCCACCGTGGGTGCTGCTG...GCCTTCAGTTGTAAGTGGCCAGATTGCTCTACAGTGACATTGAAACATGCTTTC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000177974.8
ENSMUST00000179939.8
CDS-3UTR CCA 90 bp TTGGCTGATGGCTTCTGTTCTTGGATAAGGTTTCAGAACCTCCTTCTCGCAGCAGTAGAAGGAGACTCTTaGACCGCCGTCAGCAGCGAT +
Preference number: 4 (lower is better)
Translates to: LADGFCSWIRFQNLLLAAVEGDS*TAVSSD
Trigger: ATCGCTGCTGACGGCGGTCCAAGAGTCTCCTTCTAC...TGCTGCGAGAAGGAGGTTCTGAAACCTTATCCAAGAACAGAAGCCATCAGCCAA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000177974.8
ENSMUST00000179939.8
CDS-3UTR CCA 90 bp ACCTCTCGTGAAGACGGATGTAAACAGAACCATCAGACCTACAGAAGAAGCCGAAGCACCATCAGCCACTaGGTCAGATTCAGCGGTGTG +
Preference number: 4 (lower is better)
Translates to: TSREDGCKQNHQTYRRSRSTISH*VRFSGV
Trigger: CACACCGCTGAATCTGACCCAGTGGCTGATGGTGCT...TCGGCTTCTTCTGTAGGTCTGATGGTTCTGTTTACATCCGTCTTCACGAGAGGT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000031423.10
ENSMUST00000179939.8
CDS-3UTR TCA 90 bp GAAGACGGATGTAAACAGAACCATCAGACCTACAGAAGAAGCCGAGCAGGCTGGCCCTGTAAAAGCCTTTaGTGTCACATCCTCATCCTG +
Preference number: 4 (lower is better)
Translates to: EDGCKQNHQTYRRSRAGWPCKSL*CHILIL
Trigger: CAGGATGAGGATGTGACATCAAAGGCTTTTACAGGG...CCAGCCTGCTCGGCTTCTTCTGTAGGTCTGATGGTTCTGTTTACATCCGTCTTC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000031423.10
ENSMUST00000179939.8
CDS-3UTR GCA 90 bp GAAGACGGATGTAAACAGAACCATCAGACCTACAGAAGAAGCCGAGCAGGCTGGTCAGCATTTCTTTCCTaGCACACACCCACGATTGCA +
Preference number: 4 (lower is better)
Translates to: EDGCKQNHQTYRRSRAGWSAFLS*HTPTIA
Trigger: TGCAATCGTGGGTGTGTGGCAGGAAAGAAATGCTGA...CCAGCCTGCTCGGCTTCTTCTGTAGGTCTGATGGTTCTGTTTACATCCGTCTTC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000031423.10
ENSMUST00000179939.8
CDS-3UTR GCA 90 bp GAAGACGGATGTAAACAGAACCATCAGACCTACAGAAGAAGCCGAGCAGGCTGGAGTATTAACTCCAGTTaGCACCACCACTCCCATAGC +
Preference number: 4 (lower is better)
Translates to: EDGCKQNHQTYRRSRAGWSINSS*HHHSHS
Trigger: GCTATGGGAGTGGTGGTGGCAACTGGAGTTAATACT...CCAGCCTGCTCGGCTTCTTCTGTAGGTCTGATGGTTCTGTTTACATCCGTCTTC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000031423.10
ENSMUST00000179939.8
CDS-3UTR CCA 90 bp GAAGACGGATGTAAACAGAACCATCAGACCTACAGAAGAAGCCGAGCAGGCTGGCAAACATCTTGCTCATaGATGTCCGGCTTGGCTTGT +
Preference number: 4 (lower is better)
Translates to: EDGCKQNHQTYRRSRAGWQTSCS*MSGLAC
Trigger: ACAAGCCAAGCCGGACATCCATGAGCAAGATGTTTG...CCAGCCTGCTCGGCTTCTTCTGTAGGTCTGATGGTTCTGTTTACATCCGTCTTC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000031423.10
ENSMUST00000179939.8
CDS-3UTR CCA 90 bp CCTCTCGTGAAGACGGATGTAAACAGAACCATCAGACCTACAGAAGAAGCCGAGGAGTCATGGGGACCTTaGTACTTCCAACTCGGATGT +
Preference number: 4 (lower is better)
Translates to: PLVKTDVNRTIRPTEEAEESWGP*YFQLGC
Trigger: ACATCCGAGTTGGAAGTACCAAGGTCCCCATGACTC...CTCGGCTTCTTCTGTAGGTCTGATGGTTCTGTTTACATCCGTCTTCACGAGAGG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000031423.10
ENSMUST00000179939.8
CDS-3UTR TCA 90 bp ACACAATACTTGTATTGCACCAACATCTGTCTACTGCTTCTGACTTCATTAAATGCCCCGTGCTCTCGTTaGCCCCGAAGTGGCCCAGCA +
Preference number: 4 (lower is better)
Translates to: TQYLYCTNICLLLLTSLNAPCSR*PRSGPA
Trigger: TGCTGGGCCACTTCGGGGTCAACGAGAGCACGGGGC...ATTTAATGAAGTCAGAAGCAGTAGACAGATGTTGGTGCAATACAAGTATTGTGT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000177974.8
ENSMUST00000179939.8
CDS-3UTR TCA 90 bp ACCTCTCGTGAAGACGGATGTAAACAGAACCATCAGACCTACAGAAGAAGCCGAAAAAGAGCCACCCGCTaGTCAGTGGTTCTTTTGGGT +
Preference number: 4 (lower is better)
Translates to: TSREDGCKQNHQTYRRSRKRATR*SVVLLG
Trigger: ACCCAAAAGAACCACTGATCAGCGGGTGGCTCTTTT...TCGGCTTCTTCTGTAGGTCTGATGGTTCTGTTTACATCCGTCTTCACGAGAGGT
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000031423.10
ENSMUST00000179939.8
CDS-3UTR TCA 90 bp TGCACACAATACTTGTATTGCACCAACATCTGTCTACTGCTTCTGACTTCATTACGCCGTCAGCAGCGATaGACCACCATGCAGCAGCAC +
Preference number: 4 (lower is better)
Translates to: CTQYLYCTNICLLLLTSLRRQQR*TTMQQH
Trigger: GTGCTGCTGCATGGTGGTTCATCGCTGCTGACGGCG...TAATGAAGTCAGAAGCAGTAGACAGATGTTGGTGCAATACAAGTATTGTGTGCA
49% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000177974.8
ENSMUST00000179939.8
CDS-3UTR GCA 90 bp GAAGACGGATGTAAACAGAACCATCAGACCTACAGAAGAAGCCGAGCAGGCTGGCGAGTTGCAGGCGTTTaGACGCTCTATTTTAGAAAG +
Preference number: 4 (lower is better)
Translates to: EDGCKQNHQTYRRSRAGWRVAGV*TLYFRK
Trigger: CTTTCTAAAATAGAGCGTGCAAACGCCTGCAACTCG...CCAGCCTGCTCGGCTTCTTCTGTAGGTCTGATGGTTCTGTTTACATCCGTCTTC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000031423.10
ENSMUST00000179939.8
CDS-3UTR GCA 90 bp CCTCTCGTGAAGACGGATGTAAACAGAACCATCAGACCTACAGAAGAAGCCGAGCCTTCACAAACATCTTaGTCATGGATGTCCGGCTTG +
Preference number: 4 (lower is better)
Translates to: PLVKTDVNRTIRPTEEAEPSQTS*SWMSGL
Trigger: CAAGCCGGACATCCATGAGCAAGATGTTTGTGAAGG...CTCGGCTTCTTCTGTAGGTCTGATGGTTCTGTTTACATCCGTCTTCACGAGAGG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000031423.10
ENSMUST00000179939.8
CDS-3UTR GCA 90 bp GGTTTCAGAACCTCCTTCTCGCAGCAAAGAAACCAACTTCTCTGGAGAGGCTCTCCTTCACAAACATCTTaGTCATGGATGTCCGGCTTG +
Preference number: 4 (lower is better)
Translates to: GFRTSFSQQRNQLLWRGSPSQTS*SWMSGL
Trigger: CAAGCCGGACATCCATGAGCAAGATGTTTGTGAAGG...AGAGCCTCTCCAGAGAAGTTGGTTTCTTTGCTGCGAGAAGGAGGTTCTGAAACC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000177974.8
ENSMUST00000179939.8
CDS-3UTR GCA 90 bp GTCTGTGCAATACCTGTTACCAGCACAGAAACTGACCTCTATTTACAGACTACATGGGAGGATCCAGCATaGCCACACAGCCGACGAAAG +
Preference number: 4 (lower is better)
Translates to: VCAIPVTSTETDLYLQTTWEDPA*PHSRRK
Trigger: CTTTCGTCGGCTGTGTGGGCATGCTGGATCCTCCCA...TGTAGTCTGTAAATAGAGGTCAGTTTCTGTGCTGGTAACAGGTATTGCACAGAC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000177974.8
ENSMUST00000179939.8
CDS-3UTR CCA 90 bp CTCGTGAAGACGGATGTAAACAGAACCATCAGACCTACAGAAGAAGCCGAGCAGATCGATGACACCTTCTaGAGCCCCCTTCACAAACAT +
Preference number: 4 (lower is better)
Translates to: LVKTDVNRTIRPTEEAEQIDDTF*SPLHKH
Trigger: ATGTTTGTGAAGGGGGCTCCAGAAGGTGTCATCGAT...CTGCTCGGCTTCTTCTGTAGGTCTGATGGTTCTGTTTACATCCGTCTTCACGAG
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000031423.10
ENSMUST00000179939.8
CDS-3UTR CCA 90 bp TCTCGTGAAGACGGATGTAAACAGAACCATCAGACCTACAGAAGAAGCCGAGCACTTCCAACTCGGATGTaGGTGCACCTATCGATGACA +
Preference number: 4 (lower is better)
Translates to: SREDGCKQNHQTYRRSRALPTRM*VHLSMT
Trigger: TGTCATCGATAGGTGCACCCACATCCGAGTTGGAAG...TGCTCGGCTTCTTCTGTAGGTCTGATGGTTCTGTTTACATCCGTCTTCACGAGA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000031423.10
ENSMUST00000179939.8
CDS-3UTR CCA 90 bp TCTCGTGAAGACGGATGTAAACAGAACCATCAGACCTACAGAAGAAGCCGAGCAGAGTCATGGGGACCTTaGTACTTCCAACTCGGATGT +
Preference number: 4 (lower is better)
Translates to: SREDGCKQNHQTYRRSRAESWGP*YFQLGC
Trigger: ACATCCGAGTTGGAAGTACCAAGGTCCCCATGACTC...TGCTCGGCTTCTTCTGTAGGTCTGATGGTTCTGTTTACATCCGTCTTCACGAGA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000031423.10
ENSMUST00000179939.8
CDS-3UTR CCA 90 bp GTAGATGTGTTGCTAACAACGCACATGCACGCACCCGAACACCCTTATATTTCTCTCCTCTCTCTTCAGTaGGTTGTCATGAGTGGCCAG +
Preference number: 4 (lower is better)
Translates to: VDVLLTTHMHAPEHPYISLLSLQ*VVMSGQ
Trigger: CTGGCCACTCATGACAACCCACTGAAGAGAGAGGAG...AGAAATATAAGGGTGTTCGGGTGCGTGCATGTGCGTTGTTAGCAACACATCTAC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000177974.8
ENSMUST00000179939.8
CDS-3UTR CCA 90 bp CTCCTTCTCGCAGCAAAGAAACCAACTTCTCTGGAGAGGCTCTCTGATTTGTTAAGGCTACTTCAATCCTaGGAGGATCCAGCATGCCCA +
Preference number: 4 (lower is better)
Translates to: LLLAAKKPTSLERLSDLLRLLQS*EDPACP
Trigger: TGGGCATGCTGGATCCTCCCAGGATTGAAGTAGCCT...TAACAAATCAGAGAGCCTCTCCAGAGAAGTTGGTTTCTTTGCTGCGAGAAGGAG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000177974.8
ENSMUST00000179939.8
CDS-3UTR CCA 90 bp TCTCGTGAAGACGGATGTAAACAGAACCATCAGACCTACAGAAGAAGCCGAGCAACATGGACAAGCAGATaGAGCCCACGAGCCAGATAT +
Preference number: 4 (lower is better)
Translates to: SREDGCKQNHQTYRRSRATWTSR*SPRARY
Trigger: ATATCTGGCTCGTGGGCTCCATCTGCTTGTCCATGT...TGCTCGGCTTCTTCTGTAGGTCTGATGGTTCTGTTTACATCCGTCTTCACGAGA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000031423.10
ENSMUST00000179939.8
CDS-3UTR TCA 90 bp AAACCTCTCGTGAAGACGGATGTAAACAGAACCATCAGACCTACAGAAGAAGCCATCCAGGAGCCACCATaGACTGGGTCATTGAAATGC +
Preference number: 4 (lower is better)
Translates to: KPLVKTDVNRTIRPTEEAIQEPP*TGSLKC
Trigger: GCATTTCAATGACCCAGTTCATGGTGGCTCCTGGAT...GGCTTCTTCTGTAGGTCTGATGGTTCTGTTTACATCCGTCTTCACGAGAGGTTT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000031423.10
ENSMUST00000179939.8
CDS-3UTR TCA 90 bp GGCATGCATTACAATTATCATACAGTTAGAGAGGCTATGACATTTTGCAGAGAACGCCGTCAGCAGCGATaGACCACCATGCAGCAGCAC +
Preference number: 4 (lower is better)
Translates to: GMHYNYHTVREAMTFCRERRQQR*TTMQQH
Trigger: GTGCTGCTGCATGGTGGTTCATCGCTGCTGACGGCG...TTCTCTGCAAAATGTCATAGCCTCTCTAACTGTATGATAATTGTAATGCATGCC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000177974.8
ENSMUST00000179939.8
CDS-3UTR GCA 90 bp GTCTGTGCAATACCTGTTACCAGCACAGAAACTGACCTCTATTTACAGACTACATTGAGCTTCTTGACCTaGTCCAAGCTCAGCCCCGTG +
Preference number: 4 (lower is better)
Translates to: VCAIPVTSTETDLYLQTTLSFLT*SKLSPV
Trigger: CACGGGGCTGAGCTTGGAGCAGGTCAAGAAGCTCAA...TGTAGTCTGTAAATAGAGGTCAGTTTCTGTGCTGGTAACAGGTATTGCACAGAC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000177974.8
ENSMUST00000179939.8
CDS-3UTR GCA 90 bp TCTCGTGAAGACGGATGTAAACAGAACCATCAGACCTACAGAAGAAGCCGAGCATCAGCATTTCTTTCCTaGCACACACCCACGATTGCA +
Preference number: 4 (lower is better)
Translates to: SREDGCKQNHQTYRRSRASAFLS*HTPTIA
Trigger: TGCAATCGTGGGTGTGTGGCAGGAAAGAAATGCTGA...TGCTCGGCTTCTTCTGTAGGTCTGATGGTTCTGTTTACATCCGTCTTCACGAGA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000031423.10
ENSMUST00000179939.8
CDS-3UTR GCA 90 bp GAAGACGGATGTAAACAGAACCATCAGACCTACAGAAGAAGCCGAGCAGGCTGGGGCTTATCATCCTTTTaGACTTCTCCAATTGGTGCA +
Preference number: 4 (lower is better)
Translates to: EDGCKQNHQTYRRSRAGWGLSSF*TSPIGA
Trigger: TGCACCAATTGGAGAAGTGCAAAAGGATGATAAGCC...CCAGCCTGCTCGGCTTCTTCTGTAGGTCTGATGGTTCTGTTTACATCCGTCTTC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000031423.10
ENSMUST00000179939.8
CDS-3UTR GCA 90 bp CCTCTCGTGAAGACGGATGTAAACAGAACCATCAGACCTACAGAAGAAGCCGAGCGAGTTGCAGGCGTTTaGACGCTCTATTTTAGAAAG +
Preference number: 4 (lower is better)
Translates to: PLVKTDVNRTIRPTEEAERVAGV*TLYFRK
Trigger: CTTTCTAAAATAGAGCGTGCAAACGCCTGCAACTCG...CTCGGCTTCTTCTGTAGGTCTGATGGTTCTGTTTACATCCGTCTTCACGAGAGG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000031423.10
ENSMUST00000179939.8
CDS-3UTR GCA 90 bp CCATTAGAAAGCATGTTTCAATGTCACTGTAGAGCAATCTGGCCACTTACAACTTGGGAGGATCCAGCATaGCCACACAGCCGACGAAAG +
Preference number: 4 (lower is better)
Translates to: PLESMFQCHCRAIWPLTTWEDPA*PHSRRK
Trigger: CTTTCGTCGGCTGTGTGGGCATGCTGGATCCTCCCA...AGTTGTAAGTGGCCAGATTGCTCTACAGTGACATTGAAACATGCTTTCTAATGG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000177974.8
ENSMUST00000179939.8
CDS-3UTR GCA 90 bp ATGCACACAATACTTGTATTGCACCAACATCTGTCTACTGCTTCTGACTTCATTAGCGATGAACCACCATaGAGCAGCACCCACGGTGGC +
Preference number: 4 (lower is better)
Translates to: MHTILVLHQHLSTASDFISDEPP*SSTHGG
Trigger: GCCACCGTGGGTGCTGCTGCATGGTGGTTCATCGCT...AATGAAGTCAGAAGCAGTAGACAGATGTTGGTGCAATACAAGTATTGTGTGCAT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000177974.8
ENSMUST00000179939.8
CDS-3UTR CCA 90 bp GTAGATGTGTTGCTAACAACGCACATGCACGCACCCGAACACCCTTATATTTCTCTTCCAACTCGGATGTaGGTGCACCTATCGATGACA +
Preference number: 4 (lower is better)
Translates to: VDVLLTTHMHAPEHPYISLPTRM*VHLSMT
Trigger: TGTCATCGATAGGTGCACCCACATCCGAGTTGGAAG...AGAAATATAAGGGTGTTCGGGTGCGTGCATGTGCGTTGTTAGCAACACATCTAC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000177974.8
ENSMUST00000179939.8
CDS-3UTR CCA 90 bp ATGCACACAATACTTGTATTGCACCAACATCTGTCTACTGCTTCTGACTTCATTCAGCAGCACCCACGGTaGCAGCGCCAACATAACAGC +
Preference number: 4 (lower is better)
Translates to: MHTILVLHQHLSTASDFIQQHPR*QRQHNS
Trigger: GCTGTTATGTTGGCGCTGCCACCGTGGGTGCTGCTG...AATGAAGTCAGAAGCAGTAGACAGATGTTGGTGCAATACAAGTATTGTGTGCAT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000177974.8
ENSMUST00000179939.8
CDS-3UTR CCA 90 bp GTCTGTGCAATACCTGTTACCAGCACAGAAACTGACCTCTATTTACAGACTACAGTAGAAGGAGACTCTTaGACCGCCGTCAGCAGCGAT +
Preference number: 4 (lower is better)
Translates to: VCAIPVTSTETDLYLQTTVEGDS*TAVSSD
Trigger: ATCGCTGCTGACGGCGGTCCAAGAGTCTCCTTCTAC...TGTAGTCTGTAAATAGAGGTCAGTTTCTGTGCTGGTAACAGGTATTGCACAGAC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000177974.8
ENSMUST00000179939.8
CDS-3UTR CCA 90 bp GATAAGGTTTCAGAACCTCCTTCTCGCAGCAAAGAAACCAACTTCTCTGGAGAGACATGGACAAGCAGATaGAGCCCACGAGCCAGATAT +
Preference number: 4 (lower is better)
Translates to: DKVSEPPSRSKETNFSGETWTSR*SPRARY
Trigger: ATATCTGGCTCGTGGGCTCCATCTGCTTGTCCATGT...CTCTCCAGAGAAGTTGGTTTCTTTGCTGCGAGAAGGAGGTTCTGAAACCTTATC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000177974.8
ENSMUST00000179939.8
CDS-3UTR CCA 90 bp TCTCGTGAAGACGGATGTAAACAGAACCATCAGACCTACAGAAGAAGCCGAGCATTCAGCGGTGTGATCTaGAAAATGAGCGGCAAAGGT +
Preference number: 4 (lower is better)
Translates to: SREDGCKQNHQTYRRSRAFSGVI*KMSGKG
Trigger: ACCTTTGCCGCTCATTTTCCAGATCACACCGCTGAA...TGCTCGGCTTCTTCTGTAGGTCTGATGGTTCTGTTTACATCCGTCTTCACGAGA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000031423.10
ENSMUST00000179939.8
CDS-3UTR TCA 90 bp CCTCTCGTGAAGACGGATGTAAACAGAACCATCAGACCTACAGAAGAAGCCGAGTGTGCCTGTCTTATCTaGGCAGATAACAGAAGTACA +
Preference number: 4 (lower is better)
Translates to: PLVKTDVNRTIRPTEEAECACLI*ADNRST
Trigger: TGTACTTCTGTTATCTGCTCAGATAAGACAGGCACA...CTCGGCTTCTTCTGTAGGTCTGATGGTTCTGTTTACATCCGTCTTCACGAGAGG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000031423.10
ENSMUST00000179939.8
CDS-3UTR TCA 90 bp TCTCGTGAAGACGGATGTAAACAGAACCATCAGACCTACAGAAGAAGCCGAGCAGTGAAAACTCCAGAGTaGACTCCTTCTTCATCAGCT +
Preference number: 4 (lower is better)
Translates to: SREDGCKQNHQTYRRSRAVKTPE*TPSSSA
Trigger: AGCTGATGAAGAAGGAGTTCACTCTGGAGTTTTCAC...TGCTCGGCTTCTTCTGTAGGTCTGATGGTTCTGTTTACATCCGTCTTCACGAGA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000031423.10
ENSMUST00000179939.8
CDS-3UTR TCA 90 bp GCAGAGAAATGTGGAGACTTGGCTGATGGCTTCTGTTCTTGGATAAGGTTTCAGCCCTGTAAAAGCCTTTaGTGTCACATCCTCATCCTG +
Preference number: 4 (lower is better)
Translates to: AEKCGDLADGFCSWIRFQPCKSL*CHILIL
Trigger: CAGGATGAGGATGTGACATCAAAGGCTTTTACAGGG...CTGAAACCTTATCCAAGAACAGAAGCCATCAGCCAAGTCTCCACATTTCTCTGC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000177974.8
ENSMUST00000179939.8
CDS-3UTR TCA 90 bp CTCCTTCTCGCAGCAAAGAAACCAACTTCTCTGGAGAGGCTCTCTGATTTGTTACCCTGTAAAAGCCTTTaGTGTCACATCCTCATCCTG +
Preference number: 4 (lower is better)
Translates to: LLLAAKKPTSLERLSDLLPCKSL*CHILIL
Trigger: CAGGATGAGGATGTGACATCAAAGGCTTTTACAGGG...TAACAAATCAGAGAGCCTCTCCAGAGAAGTTGGTTTCTTTGCTGCGAGAAGGAG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000177974.8
ENSMUST00000179939.8
CDS-3UTR TCA 90 bp ACCTCTCGTGAAGACGGATGTAAACAGAACCATCAGACCTACAGAAGAAGCCGAGATCAAGAAGTGAAGTaGCATGGACAAGCAGATGGA +
Preference number: 4 (lower is better)
Translates to: TSREDGCKQNHQTYRRSRDQEVK*HGQADG
Trigger: TCCATCTGCTTGTCCATGTCACTTCACTTCTTGATC...TCGGCTTCTTCTGTAGGTCTGATGGTTCTGTTTACATCCGTCTTCACGAGAGGT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000031423.10
ENSMUST00000179939.8
CDS-3UTR GCA 90 bp AAACCTCTCGTGAAGACGGATGTAAACAGAACCATCAGACCTACAGAAGAAGCCAGTATTAACTCCAGTTaGCACCACCACTCCCATAGC +
Preference number: 4 (lower is better)
Translates to: KPLVKTDVNRTIRPTEEASINSS*HHHSHS
Trigger: GCTATGGGAGTGGTGGTGGCAACTGGAGTTAATACT...GGCTTCTTCTGTAGGTCTGATGGTTCTGTTTACATCCGTCTTCACGAGAGGTTT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000031423.10
ENSMUST00000179939.8
CDS-3UTR GCA 90 bp AAACCTCTCGTGAAGACGGATGTAAACAGAACCATCAGACCTACAGAAGAAGCCTCTCTCCTGTTCTGTTaGCACCATTTCATCCCGGAT +
Preference number: 4 (lower is better)
Translates to: KPLVKTDVNRTIRPTEEASLLFC*HHFIPD
Trigger: ATCCGGGATGAAATGGTGGCAACAGAACAGGAGAGA...GGCTTCTTCTGTAGGTCTGATGGTTCTGTTTACATCCGTCTTCACGAGAGGTTT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000031423.10
ENSMUST00000179939.8
CDS-3UTR GCA 90 bp TGGCTTCTGTTCTTGGATAAGGTTTCAGAACCTCCTTCTCGCAGCAAAGAAACCTCTCTCCTGTTCTGTTaGCACCATTTCATCCCGGAT +
Preference number: 4 (lower is better)
Translates to: WLLFLDKVSEPPSRSKETSLLFC*HHFIPD
Trigger: ATCCGGGATGAAATGGTGGCAACAGAACAGGAGAGA...GGTTTCTTTGCTGCGAGAAGGAGGTTCTGAAACCTTATCCAAGAACAGAAGCCA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000177974.8
ENSMUST00000179939.8
CDS-3UTR GCA 90 bp TCTCGTGAAGACGGATGTAAACAGAACCATCAGACCTACAGAAGAAGCCGAGCAATAACTTTGGAAAGCTaGTCCCCAAACTCGTCTAGC +
Preference number: 4 (lower is better)
Translates to: SREDGCKQNHQTYRRSRAITLES*SPNSSS
Trigger: GCTAGACGAGTTTGGGGAGCAGCTTTCCAAAGTTAT...TGCTCGGCTTCTTCTGTAGGTCTGATGGTTCTGTTTACATCCGTCTTCACGAGA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000031423.10
ENSMUST00000179939.8
CDS-3UTR GCA 90 bp ACACAATACTTGTATTGCACCAACATCTGTCTACTGCTTCTGACTTCATTAAATCAGACCCTCAGGGATTaGGGCAACAGCCAGGGCCAC +
Preference number: 4 (lower is better)
Translates to: TQYLYCTNICLLLLTSLNQTLRD*GNSQGH
Trigger: GTGGCCCTGGCTGTTGCCGCAATCCCTGAGGGTCTG...ATTTAATGAAGTCAGAAGCAGTAGACAGATGTTGGTGCAATACAAGTATTGTGT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000177974.8
ENSMUST00000179939.8
CDS-3UTR GCA 90 bp TTACAGATTTTACAAAACATACACACACATAAACACACACTTGCCCTTACACCACAGACCCTCAGGGATTaGGGCAACAGCCAGGGCCAC +
Preference number: 4 (lower is better)
Translates to: LQILQNIHTHKHTLALTPQTLRD*GNSQGH
Trigger: GTGGCCCTGGCTGTTGCCGCAATCCCTGAGGGTCTG...TGGTGTAAGGGCAAGTGTGTGTTTATGTGTGTGTATGTTTTGTAAAATCTGTAA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000179939.8
CDS-3UTR CCA 90 bp CCTCTCGTGAAGACGGATGTAAACAGAACCATCAGACCTACAGAAGAAGCCGAGTTGCACTTCTCCAATTaGTGCATATGTGGATCCAGT +
Preference number: 4 (lower is better)
Translates to: PLVKTDVNRTIRPTEEAELHFSN*CICGSS
Trigger: ACTGGATCCACATATGCACCAATTGGAGAAGTGCAA...CTCGGCTTCTTCTGTAGGTCTGATGGTTCTGTTTACATCCGTCTTCACGAGAGG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000031423.10
ENSMUST00000179939.8
CDS-3UTR CCA 90 bp AAACCTCTCGTGAAGACGGATGTAAACAGAACCATCAGACCTACAGAAGAAGCCTACACAGAGCACAGATaGTGGCTAACTCTACAAGCC +
Preference number: 4 (lower is better)
Translates to: KPLVKTDVNRTIRPTEEAYTEHR*WLTLQA
Trigger: GGCTTGTAGAGTTAGCCACCATCTGTGCTCTGTGTA...GGCTTCTTCTGTAGGTCTGATGGTTCTGTTTACATCCGTCTTCACGAGAGGTTT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000031423.10
ENSMUST00000179939.8
CDS-3UTR CCA 90 bp GCAGAGAAATGTGGAGACTTGGCTGATGGCTTCTGTTCTTGGATAAGGTTTCAGTACACAGAGCACAGATaGTGGCTAACTCTACAAGCC +
Preference number: 4 (lower is better)
Translates to: AEKCGDLADGFCSWIRFQYTEHR*WLTLQA
Trigger: GGCTTGTAGAGTTAGCCACCATCTGTGCTCTGTGTA...CTGAAACCTTATCCAAGAACAGAAGCCATCAGCCAAGTCTCCACATTTCTCTGC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000177974.8
ENSMUST00000179939.8
CDS-3UTR CCA 90 bp AAACCTCTCGTGAAGACGGATGTAAACAGAACCATCAGACCTACAGAAGAAGCCCATGGATGTCCGGCTTaGCTTGTTTGGGGTACAATA +
Preference number: 4 (lower is better)
Translates to: KPLVKTDVNRTIRPTEEAHGCPA*LVWGTI
Trigger: TATTGTACCCCAAACAAGCCAAGCCGGACATCCATG...GGCTTCTTCTGTAGGTCTGATGGTTCTGTTTACATCCGTCTTCACGAGAGGTTT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000031423.10
ENSMUST00000179939.8
CDS-3UTR CCA 90 bp AACGCACATGCACGCACCCGAACACCCTTATATTTCTGCAAATGGTTTAGGAAGCATGGATGTCCGGCTTaGCTTGTTTGGGGTACAATA +
Preference number: 4 (lower is better)
Translates to: NAHARTRTPLYFCKWFRKHGCPA*LVWGTI
Trigger: TATTGTACCCCAAACAAGCCAAGCCGGACATCCATG...CTTCCTAAACCATTTGCAGAAATATAAGGGTGTTCGGGTGCGTGCATGTGCGTT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000177974.8
ENSMUST00000179939.8
CDS-3UTR CCA 90 bp AAACCTCTCGTGAAGACGGATGTAAACAGAACCATCAGACCTACAGAAGAAGCCCAAACATCTTGCTCATaGATGTCCGGCTTGGCTTGT +
Preference number: 4 (lower is better)
Translates to: KPLVKTDVNRTIRPTEEAQTSCS*MSGLAC
Trigger: ACAAGCCAAGCCGGACATCCATGAGCAAGATGTTTG...GGCTTCTTCTGTAGGTCTGATGGTTCTGTTTACATCCGTCTTCACGAGAGGTTT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000031423.10
ENSMUST00000179939.8
CDS-3UTR CCA 90 bp TGTAGAGCAATCTGGCCACTTACAACTGAAGGCATGCATTACAATTATCATACACAATGCGGCGACAGATaGCCACAGCGGTGCCTTTGT +
Preference number: 4 (lower is better)
Translates to: CRAIWPLTTEGMHYNYHTQCGDR*PQRCLC
Trigger: ACAAAGGCACCGCTGTGGCCATCTGTCGCCGCATTG...TGTATGATAATTGTAATGCATGCCTTCAGTTGTAAGTGGCCAGATTGCTCTACA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000177974.8
ENSMUST00000179939.8
CDS-3UTR CCA 90 bp AAACCTCTCGTGAAGACGGATGTAAACAGAACCATCAGACCTACAGAAGAAGCCAAGCAGGCATCTCTCTaGGCTGAAGGGCTTAATTCA +
Preference number: 4 (lower is better)
Translates to: KPLVKTDVNRTIRPTEEAKQASL*AEGLNS
Trigger: TGAATTAAGCCCTTCAGCCCAGAGAGATGCCTGCTT...GGCTTCTTCTGTAGGTCTGATGGTTCTGTTTACATCCGTCTTCACGAGAGGTTT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000031423.10
ENSMUST00000179939.8
CDS-3UTR CCA 90 bp GGTTTCAGAACCTCCTTCTCGCAGCAAAGAAACCAACTTCTCTGGAGAGGCTCTACAATCTTAGACTTGTaGGAAGGTTCAACTCGAGCA +
Preference number: 4 (lower is better)
Translates to: GFRTSFSQQRNQLLWRGSTILDL*EGSTRA
Trigger: TGCTCGAGTTGAACCTTCCCACAAGTCTAAGATTGT...AGAGCCTCTCCAGAGAAGTTGGTTTCTTTGCTGCGAGAAGGAGGTTCTGAAACC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000177974.8
ENSMUST00000179939.8
CDS-3UTR CCA 90 bp CCTCTCGTGAAGACGGATGTAAACAGAACCATCAGACCTACAGAAGAAGCCGAGTTGACCCAGAGTAACTaGACAGGAATTAAAGCCTCA +
Preference number: 4 (lower is better)
Translates to: PLVKTDVNRTIRPTEEAELTQSN*TGIKAS
Trigger: TGAGGCTTTAATTCCTGTCCAGTTACTCTGGGTCAA...CTCGGCTTCTTCTGTAGGTCTGATGGTTCTGTTTACATCCGTCTTCACGAGAGG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000031423.10
ENSMUST00000179939.8
CDS-3UTR CCA 90 bp TGCACACAATACTTGTATTGCACCAACATCTGTCTACTGCTTCTGACTTCATTACCACCCGCTGATCAGTaGTTCTTTTGGGTTCCGGGG +
Preference number: 4 (lower is better)
Translates to: CTQYLYCTNICLLLLTSLPPADQ*FFWVPG
Trigger: CCCCGGAACCCAAAAGAACCACTGATCAGCGGGTGG...TAATGAAGTCAGAAGCAGTAGACAGATGTTGGTGCAATACAAGTATTGTGTGCA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000177974.8
ENSMUST00000179939.8
CDS-3UTR CCA 90 bp GAAGACGGATGTAAACAGAACCATCAGACCTACAGAAGAAGCCGAGCAGGCTGGAAGTGCCATTGTCATTaGATATGGGGACTCAAAGAT +
Preference number: 4 (lower is better)
Translates to: EDGCKQNHQTYRRSRAGWKCHCH*IWGLKD
Trigger: ATCTTTGAGTCCCCATATCCAATGACAATGGCACTT...CCAGCCTGCTCGGCTTCTTCTGTAGGTCTGATGGTTCTGTTTACATCCGTCTTC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000031423.10
ENSMUST00000179939.8
CDS-3UTR CCA 90 bp GATAAGGTTTCAGAACCTCCTTCTCGCAGCAAAGAAACCAACTTCTCTGGAGAGTTCAGCGGTGTGATCTaGAAAATGAGCGGCAAAGGT +
Preference number: 4 (lower is better)
Translates to: DKVSEPPSRSKETNFSGEFSGVI*KMSGKG
Trigger: ACCTTTGCCGCTCATTTTCCAGATCACACCGCTGAA...CTCTCCAGAGAAGTTGGTTTCTTTGCTGCGAGAAGGAGGTTCTGAAACCTTATC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000177974.8
ENSMUST00000179939.8
CDS-3UTR TCA 90 bp GTCTGTGCAATACCTGTTACCAGCACAGAAACTGACCTCTATTTACAGACTACAATCCAGGAGCCACCATaGACTGGGTCATTGAAATGC +
Preference number: 4 (lower is better)
Translates to: VCAIPVTSTETDLYLQTTIQEPP*TGSLKC
Trigger: GCATTTCAATGACCCAGTTCATGGTGGCTCCTGGAT...TGTAGTCTGTAAATAGAGGTCAGTTTCTGTGCTGGTAACAGGTATTGCACAGAC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000177974.8
ENSMUST00000179939.8
CDS-3UTR TCA 90 bp CACACAATACTTGTATTGCACCAACATCTGTCTACTGCTTCTGACTTCATTAAATTCAGTGGGTTGTCATaGGTGGCCAGAGCCAGGCAC +
Preference number: 4 (lower is better)
Translates to: HTILVLHQHLSTASDFIKFSGLS*VARARH
Trigger: GTGCCTGGCTCTGGCCACTCATGACAACCCACTGAA...TTTAATGAAGTCAGAAGCAGTAGACAGATGTTGGTGCAATACAAGTATTGTGTG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000177974.8
ENSMUST00000179939.8
CDS-3UTR TCA 90 bp GTCTGTGCAATACCTGTTACCAGCACAGAAACTGACCTCTATTTACAGACTACAAAAAGAGCCACCCGCTaGTCAGTGGTTCTTTTGGGT +
Preference number: 4 (lower is better)
Translates to: VCAIPVTSTETDLYLQTTKRATR*SVVLLG
Trigger: ACCCAAAAGAACCACTGATCAGCGGGTGGCTCTTTT...TGTAGTCTGTAAATAGAGGTCAGTTTCTGTGCTGGTAACAGGTATTGCACAGAC
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000177974.8
ENSMUST00000179939.8
CDS-3UTR TCA 90 bp ACCTCTCGTGAAGACGGATGTAAACAGAACCATCAGACCTACAGAAGAAGCCGATTTCAGACAAGCTGTTaGGGGCATTACACATCTCTA +
Preference number: 4 (lower is better)
Translates to: TSREDGCKQNHQTYRRSRFQTSC*GHYTSL
Trigger: TAGAGATGTGTAATGCCCTCAACAGCTTGTCTGAAA...TCGGCTTCTTCTGTAGGTCTGATGGTTCTGTTTACATCCGTCTTCACGAGAGGT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000031423.10
ENSMUST00000179939.8
CDS-3UTR TCA 90 bp GCAGAGAAATGTGGAGACTTGGCTGATGGCTTCTGTTCTTGGATAAGGTTTCAGGATCAAGAAGTGAAGTaGCATGGACAAGCAGATGGA +
Preference number: 4 (lower is better)
Translates to: AEKCGDLADGFCSWIRFQDQEVK*HGQADG
Trigger: TCCATCTGCTTGTCCATGTCACTTCACTTCTTGATC...CTGAAACCTTATCCAAGAACAGAAGCCATCAGCCAAGTCTCCACATTTCTCTGC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000177974.8
ENSMUST00000179939.8
CDS-3UTR GCA 90 bp TGTAGAGCAATCTGGCCACTTACAACTGAAGGCATGCATTACAATTATCATACATTGAGCTTCTTGACCTaGTCCAAGCTCAGCCCCGTG +
Preference number: 4 (lower is better)
Translates to: CRAIWPLTTEGMHYNYHTLSFLT*SKLSPV
Trigger: CACGGGGCTGAGCTTGGAGCAGGTCAAGAAGCTCAA...TGTATGATAATTGTAATGCATGCCTTCAGTTGTAAGTGGCCAGATTGCTCTACA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000177974.8
ENSMUST00000179939.8
CDS-3UTR GCA 90 bp GAAAGCATGTTTCAATGTCACTGTAGAGCAATCTGGCCACTTACAACTGAAGGCAGTATTAACTCCAGTTaGCACCACCACTCCCATAGC +
Preference number: 4 (lower is better)
Translates to: ESMFQCHCRAIWPLTTEGSINSS*HHHSHS
Trigger: GCTATGGGAGTGGTGGTGGCAACTGGAGTTAATACT...GCCTTCAGTTGTAAGTGGCCAGATTGCTCTACAGTGACATTGAAACATGCTTTC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000177974.8
ENSMUST00000179939.8
CDS-3UTR GCA 90 bp AACGCACATGCACGCACCCGAACACCCTTATATTTCTGCAAATGGTTTAGGAAGATAACTTTGGAAAGCTaGTCCCCAAACTCGTCTAGC +
Preference number: 4 (lower is better)
Translates to: NAHARTRTPLYFCKWFRKITLES*SPNSSS
Trigger: GCTAGACGAGTTTGGGGAGCAGCTTTCCAAAGTTAT...CTTCCTAAACCATTTGCAGAAATATAAGGGTGTTCGGGTGCGTGCATGTGCGTT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000177974.8
ENSMUST00000179939.8
CDS-3UTR GCA 90 bp ACCTCCTTCTCGCAGCAAAGAAACCAACTTCTCTGGAGAGGCTCTCTGATTTGTGTTGATGATCCAGACTaGAATGCAAATGAGGGAGAT +
Preference number: 4 (lower is better)
Translates to: TSFSQQRNQLLWRGSLICVDDPD*NANEGD
Trigger: ATCTCCCTCATTTGCATTGCAGTCTGGATCATCAAC...ACAAATCAGAGAGCCTCTCCAGAGAAGTTGGTTTCTTTGCTGCGAGAAGGAGGT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000177974.8
ENSMUST00000179939.8
CDS-3UTR GCA 90 bp GGCATGCATTACAATTATCATACAGTTAGAGAGGCTATGACATTTTGCAGAGAAACCCGGATGCCTGCTTaGCGGCACAGCTTCACAGAA +
Preference number: 4 (lower is better)
Translates to: GMHYNYHTVREAMTFCRETRMPA*RHSFTE
Trigger: TTCTGTGAAGCTGTGCCGGCAAGCAGGCATCCGGGT...TTCTCTGCAAAATGTCATAGCCTCTCTAACTGTATGATAATTGTAATGCATGCC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000177974.8
ENSMUST00000179939.8
CDS-3UTR GCA 90 bp TGCACACAATACTTGTATTGCACCAACATCTGTCTACTGCTTCTGACTTCATTACATCCTGCCCAAAGATaGCAATGCGGCGACAGATGG +
Preference number: 4 (lower is better)
Translates to: CTQYLYCTNICLLLLTSLHPAQR*QCGDRW
Trigger: CCATCTGTCGCCGCATTGGCATCTTTGGGCAGGATG...TAATGAAGTCAGAAGCAGTAGACAGATGTTGGTGCAATACAAGTATTGTGTGCA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000177974.8
ENSMUST00000179939.8
CDS-3UTR CCA 90 bp TTGGCTGATGGCTTCTGTTCTTGGATAAGGTTTCAGAACCTCCTTCTCGCAGCATTGCACTTCTCCAATTaGTGCATATGTGGATCCAGT +
Preference number: 4 (lower is better)
Translates to: LADGFCSWIRFQNLLLAALHFSN*CICGSS
Trigger: ACTGGATCCACATATGCACCAATTGGAGAAGTGCAA...TGCTGCGAGAAGGAGGTTCTGAAACCTTATCCAAGAACAGAAGCCATCAGCCAA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000177974.8
ENSMUST00000179939.8
CDS-3UTR CCA 90 bp TCGCAGCAAAGAAACCAACTTCTCTGGAGAGGCTCTCTGATTTGTTATGCTAAAACAGAGCACAGATGGTaGCTAACTCTACAAGCCCGT +
Preference number: 4 (lower is better)
Translates to: SQQRNQLLWRGSLICYAKTEHRW*LTLQAR
Trigger: ACGGGCTTGTAGAGTTAGCCACCATCTGTGCTCTGT...TTTAGCATAACAAATCAGAGAGCCTCTCCAGAGAAGTTGGTTTCTTTGCTGCGA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000177974.8
ENSMUST00000179939.8
CDS-3UTR CCA 90 bp GAAAGCATGTTTCAATGTCACTGTAGAGCAATCTGGCCACTTACAACTGAAGGCCATGGATGTCCGGCTTaGCTTGTTTGGGGTACAATA +
Preference number: 4 (lower is better)
Translates to: ESMFQCHCRAIWPLTTEGHGCPA*LVWGTI
Trigger: TATTGTACCCCAAACAAGCCAAGCCGGACATCCATG...GCCTTCAGTTGTAAGTGGCCAGATTGCTCTACAGTGACATTGAAACATGCTTTC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000177974.8
ENSMUST00000179939.8
CDS-3UTR CCA 90 bp TCGCAGCAAAGAAACCAACTTCTCTGGAGAGGCTCTCTGATTTGTTATGCTAAACTTCCAACTCGGATGTaGGTGCACCTATCGATGACA +
Preference number: 4 (lower is better)
Translates to: SQQRNQLLWRGSLICYAKLPTRM*VHLSMT
Trigger: TGTCATCGATAGGTGCACCCACATCCGAGTTGGAAG...TTTAGCATAACAAATCAGAGAGCCTCTCCAGAGAAGTTGGTTTCTTTGCTGCGA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000177974.8
ENSMUST00000179939.8
CDS-3UTR CCA 90 bp ACCTCTCGTGAAGACGGATGTAAACAGAACCATCAGACCTACAGAAGAAGCCGATTGACCCAGAGTAACTaGACAGGAATTAAAGCCTCA +
Preference number: 4 (lower is better)
Translates to: TSREDGCKQNHQTYRRSRLTQSN*TGIKAS
Trigger: TGAGGCTTTAATTCCTGTCCAGTTACTCTGGGTCAA...TCGGCTTCTTCTGTAGGTCTGATGGTTCTGTTTACATCCGTCTTCACGAGAGGT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000031423.10
ENSMUST00000179939.8
CDS-3UTR CCA 90 bp TCTCGTGAAGACGGATGTAAACAGAACCATCAGACCTACAGAAGAAGCCGAGCAATCCTCAGCAAAGACTaGTTTTCAGACAAGCTGTTG +
Preference number: 4 (lower is better)
Translates to: SREDGCKQNHQTYRRSRAILSKD*FSDKLL
Trigger: CAACAGCTTGTCTGAAAACCAGTCTTTGCTGAGGAT...TGCTCGGCTTCTTCTGTAGGTCTGATGGTTCTGTTTACATCCGTCTTCACGAGA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000031423.10
ENSMUST00000179939.8
CDS-3UTR CCA 90 bp TTGGCTGATGGCTTCTGTTCTTGGATAAGGTTTCAGAACCTCCTTCTCGCAGCAATCCTCAGCAAAGACTaGTTTTCAGACAAGCTGTTG +
Preference number: 4 (lower is better)
Translates to: LADGFCSWIRFQNLLLAAILSKD*FSDKLL
Trigger: CAACAGCTTGTCTGAAAACCAGTCTTTGCTGAGGAT...TGCTGCGAGAAGGAGGTTCTGAAACCTTATCCAAGAACAGAAGCCATCAGCCAA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000177974.8
ENSMUST00000179939.8
CDS-3UTR CCA 90 bp TGTAGAGCAATCTGGCCACTTACAACTGAAGGCATGCATTACAATTATCATACAAGCACCATCAGCCACTaGGTCAGATTCAGCGGTGTG +
Preference number: 4 (lower is better)
Translates to: CRAIWPLTTEGMHYNYHTSTISH*VRFSGV
Trigger: CACACCGCTGAATCTGACCCAGTGGCTGATGGTGCT...TGTATGATAATTGTAATGCATGCCTTCAGTTGTAAGTGGCCAGATTGCTCTACA
46% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000177974.8
ENSMUST00000179939.8
CDS-3UTR TCA 90 bp AAACCTCTCGTGAAGACGGATGTAAACAGAACCATCAGACCTACAGAAGAAGCCTGTGCCTGTCTTATCTaGGCAGATAACAGAAGTACA +
Preference number: 4 (lower is better)
Translates to: KPLVKTDVNRTIRPTEEACACLI*ADNRST
Trigger: TGTACTTCTGTTATCTGCTCAGATAAGACAGGCACA...GGCTTCTTCTGTAGGTCTGATGGTTCTGTTTACATCCGTCTTCACGAGAGGTTT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000031423.10
ENSMUST00000179939.8
CDS-3UTR TCA 90 bp CTCCTTCTCGCAGCAAAGAAACCAACTTCTCTGGAGAGGCTCTCTGATTTGTTATGTGCCTGTCTTATCTaGGCAGATAACAGAAGTACA +
Preference number: 4 (lower is better)
Translates to: LLLAAKKPTSLERLSDLLCACLI*ADNRST
Trigger: TGTACTTCTGTTATCTGCTCAGATAAGACAGGCACA...TAACAAATCAGAGAGCCTCTCCAGAGAAGTTGGTTTCTTTGCTGCGAGAAGGAG
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000177974.8
ENSMUST00000179939.8
CDS-3UTR TCA 90 bp GAAAGCATGTTTCAATGTCACTGTAGAGCAATCTGGCCACTTACAACTGAAGGCGTGAAAACTCCAGAGTaGACTCCTTCTTCATCAGCT +
Preference number: 4 (lower is better)
Translates to: ESMFQCHCRAIWPLTTEGVKTPE*TPSSSA
Trigger: AGCTGATGAAGAAGGAGTTCACTCTGGAGTTTTCAC...GCCTTCAGTTGTAAGTGGCCAGATTGCTCTACAGTGACATTGAAACATGCTTTC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000177974.8
ENSMUST00000179939.8
CDS-3UTR TCA 90 bp TTACAGATTTTACAAAACATACACACACATAAACACACACTTGCCCTTACACCATTCAGTGGGTTGTCATaGGTGGCCAGAGCCAGGCAC +
Preference number: 4 (lower is better)
Translates to: LQILQNIHTHKHTLALTPFSGLS*VARARH
Trigger: GTGCCTGGCTCTGGCCACTCATGACAACCCACTGAA...TGGTGTAAGGGCAAGTGTGTGTTTATGTGTGTGTATGTTTTGTAAAATCTGTAA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000179939.8
CDS-3UTR GCA 90 bp TCTCGTGAAGACGGATGTAAACAGAACCATCAGACCTACAGAAGAAGCCGAGCAAGTAAGTCTTCAAACTaGTCAATCACAAGTTCCAGC +
Preference number: 4 (lower is better)
Translates to: SREDGCKQNHQTYRRSRASKSSN*SITSSS
Trigger: GCTGGAACTTGTGATTGAGCAGTTTGAAGACTTACT...TGCTCGGCTTCTTCTGTAGGTCTGATGGTTCTGTTTACATCCGTCTTCACGAGA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000031423.10
ENSMUST00000179939.8
CDS-3UTR GCA 90 bp ACCTCCTTCTCGCAGCAAAGAAACCAACTTCTCTGGAGAGGCTCTCTGATTTGTAGTAAGTCTTCAAACTaGTCAATCACAAGTTCCAGC +
Preference number: 4 (lower is better)
Translates to: TSFSQQRNQLLWRGSLICSKSSN*SITSSS
Trigger: GCTGGAACTTGTGATTGAGCAGTTTGAAGACTTACT...ACAAATCAGAGAGCCTCTCCAGAGAAGTTGGTTTCTTTGCTGCGAGAAGGAGGT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000177974.8
ENSMUST00000179939.8
CDS-3UTR GCA 90 bp AAACCTCTCGTGAAGACGGATGTAAACAGAACCATCAGACCTACAGAAGAAGCCCCTGTCGATACACTTTaGCCATTTCAGGCTCATATT +
Preference number: 4 (lower is better)
Translates to: KPLVKTDVNRTIRPTEEAPVDTL*PFQAHI
Trigger: AATATGAGCCTGAAATGGGCAAAGTGTATCGACAGG...GGCTTCTTCTGTAGGTCTGATGGTTCTGTTTACATCCGTCTTCACGAGAGGTTT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000031423.10
ENSMUST00000179939.8
CDS-3UTR GCA 90 bp TGGCTTCTGTTCTTGGATAAGGTTTCAGAACCTCCTTCTCGCAGCAAAGAAACCCCTGTCGATACACTTTaGCCATTTCAGGCTCATATT +
Preference number: 4 (lower is better)
Translates to: WLLFLDKVSEPPSRSKETPVDTL*PFQAHI
Trigger: AATATGAGCCTGAAATGGGCAAAGTGTATCGACAGG...GGTTTCTTTGCTGCGAGAAGGAGGTTCTGAAACCTTATCCAAGAACAGAAGCCA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000177974.8
ENSMUST00000179939.8
CDS-3UTR GCA 90 bp TCGCAGCAAAGAAACCAACTTCTCTGGAGAGGCTCTCTGATTTGTTATGCTAAATCTCTCCTGTTCTGTTaGCACCATTTCATCCCGGAT +
Preference number: 4 (lower is better)
Translates to: SQQRNQLLWRGSLICYAKSLLFC*HHFIPD
Trigger: ATCCGGGATGAAATGGTGGCAACAGAACAGGAGAGA...TTTAGCATAACAAATCAGAGAGCCTCTCCAGAGAAGTTGGTTTCTTTGCTGCGA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000177974.8
ENSMUST00000179939.8
CDS-3UTR GCA 90 bp ACTGAAGTTAGGACTGGAGGCCTATGTTGTAACCATTCAGCAGCTGTAGTGTTTATAACTTTGGAAAGCTaGTCCCCAAACTCGTCTAGC +
Preference number: 4 (lower is better)
Translates to: TEVRTGGLCCNHSAAVVFITLES*SPNSSS
Trigger: GCTAGACGAGTTTGGGGAGCAGCTTTCCAAAGTTAT...AAACACTACAGCTGCTGAATGGTTACAACATAGGCCTCCAGTCCTAACTTCAGT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000177974.8
ENSMUST00000179939.8
CDS-3UTR GCA 90 bp AAACCTCTCGTGAAGACGGATGTAAACAGAACCATCAGACCTACAGAAGAAGCCGTTGATGATCCAGACTaGAATGCAAATGAGGGAGAT +
Preference number: 4 (lower is better)
Translates to: KPLVKTDVNRTIRPTEEAVDDPD*NANEGD
Trigger: ATCTCCCTCATTTGCATTGCAGTCTGGATCATCAAC...GGCTTCTTCTGTAGGTCTGATGGTTCTGTTTACATCCGTCTTCACGAGAGGTTT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000031423.10
ENSMUST00000179939.8
CDS-3UTR GCA 90 bp TGGCTTCTGTTCTTGGATAAGGTTTCAGAACCTCCTTCTCGCAGCAAAGAAACCGTTGATGATCCAGACTaGAATGCAAATGAGGGAGAT +
Preference number: 4 (lower is better)
Translates to: WLLFLDKVSEPPSRSKETVDDPD*NANEGD
Trigger: ATCTCCCTCATTTGCATTGCAGTCTGGATCATCAAC...GGTTTCTTTGCTGCGAGAAGGAGGTTCTGAAACCTTATCCAAGAACAGAAGCCA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000177974.8
ENSMUST00000179939.8
CDS-3UTR GCA 90 bp TCTCGTGAAGACGGATGTAAACAGAACCATCAGACCTACAGAAGAAGCCGAGCAGATAGCATTTTTCTTTaGCATCCTACGAGTTCCAAG +
Preference number: 4 (lower is better)
Translates to: SREDGCKQNHQTYRRSRADSIFL*HPTSSK
Trigger: CTTGGAACTCGTAGGATGGCAAAGAAAAATGCTATC...TGCTCGGCTTCTTCTGTAGGTCTGATGGTTCTGTTTACATCCGTCTTCACGAGA
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000031423.10
ENSMUST00000179939.8
CDS-3UTR GCA 90 bp TCGCAGCAAAGAAACCAACTTCTCTGGAGAGGCTCTCTGATTTGTTATGCTAAACCTTCACAAACATCTTaGTCATGGATGTCCGGCTTG +
Preference number: 4 (lower is better)
Translates to: SQQRNQLLWRGSLICYAKPSQTS*SWMSGL
Trigger: CAAGCCGGACATCCATGAGCAAGATGTTTGTGAAGG...TTTAGCATAACAAATCAGAGAGCCTCTCCAGAGAAGTTGGTTTCTTTGCTGCGA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000177974.8
ENSMUST00000179939.8
CDS-3UTR CCA 90 bp TGCACACAATACTTGTATTGCACCAACATCTGTCTACTGCTTCTGACTTCATTACTCCTCTCTCTTCAGTaGGTTGTCATGAGTGGCCAG +
Preference number: 4 (lower is better)
Translates to: CTQYLYCTNICLLLLTSLLLSLQ*VVMSGQ
Trigger: CTGGCCACTCATGACAACCCACTGAAGAGAGAGGAG...TAATGAAGTCAGAAGCAGTAGACAGATGTTGGTGCAATACAAGTATTGTGTGCA
44% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000177974.8
ENSMUST00000179939.8
CDS-3UTR CCA 90 bp AAACCTCTCGTGAAGACGGATGTAAACAGAACCATCAGACCTACAGAAGAAGCCACAATCTTAGACTTGTaGGAAGGTTCAACTCGAGCA +
Preference number: 4 (lower is better)
Translates to: KPLVKTDVNRTIRPTEEATILDL*EGSTRA
Trigger: TGCTCGAGTTGAACCTTCCCACAAGTCTAAGATTGT...GGCTTCTTCTGTAGGTCTGATGGTTCTGTTTACATCCGTCTTCACGAGAGGTTT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000031423.10
ENSMUST00000179939.8
CDS-3UTR CCA 90 bp CTCCTTCTCGCAGCAAAGAAACCAACTTCTCTGGAGAGGCTCTCTGATTTGTTATTGACCCAGAGTAACTaGACAGGAATTAAAGCCTCA +
Preference number: 4 (lower is better)
Translates to: LLLAAKKPTSLERLSDLLLTQSN*TGIKAS
Trigger: TGAGGCTTTAATTCCTGTCCAGTTACTCTGGGTCAA...TAACAAATCAGAGAGCCTCTCCAGAGAAGTTGGTTTCTTTGCTGCGAGAAGGAG
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000177974.8
ENSMUST00000179939.8
CDS-3UTR CCA 90 bp ACCTCTCGTGAAGACGGATGTAAACAGAACCATCAGACCTACAGAAGAAGCCGACATTGTCATTGGATATaGGGACTCAAAGATTGCACA +
Preference number: 4 (lower is better)
Translates to: TSREDGCKQNHQTYRRSRHCHWI*GLKDCT
Trigger: TGTGCAATCTTTGAGTCCCCATATCCAATGACAATG...TCGGCTTCTTCTGTAGGTCTGATGGTTCTGTTTACATCCGTCTTCACGAGAGGT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000031423.10
ENSMUST00000179939.8
CDS-3UTR CCA 90 bp GGTAGATGTGTTGCTAACAACGCACATGCACGCACCCGAACACCCTTATATTTCCATTGTCATTGGATATaGGGACTCAAAGATTGCACA +
Preference number: 4 (lower is better)
Translates to: GRCVANNAHARTRTPLYFHCHWI*GLKDCT
Trigger: TGTGCAATCTTTGAGTCCCCATATCCAATGACAATG...GAAATATAAGGGTGTTCGGGTGCGTGCATGTGCGTTGTTAGCAACACATCTACC
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000177974.8
ENSMUST00000179939.8
CDS-3UTR CCA 90 bp AAACCTCTCGTGAAGACGGATGTAAACAGAACCATCAGACCTACAGAAGAAGCCATCCTCAGCAAAGACTaGTTTTCAGACAAGCTGTTG +
Preference number: 4 (lower is better)
Translates to: KPLVKTDVNRTIRPTEEAILSKD*FSDKLL
Trigger: CAACAGCTTGTCTGAAAACCAGTCTTTGCTGAGGAT...GGCTTCTTCTGTAGGTCTGATGGTTCTGTTTACATCCGTCTTCACGAGAGGTTT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000031423.10
ENSMUST00000179939.8
CDS-3UTR TCA 90 bp TGTAGAGCAATCTGGCCACTTACAACTGAAGGCATGCATTACAATTATCATACAAAAAGAGCCACCCGCTaGTCAGTGGTTCTTTTGGGT +
Preference number: 4 (lower is better)
Translates to: CRAIWPLTTEGMHYNYHTKRATR*SVVLLG
Trigger: ACCCAAAAGAACCACTGATCAGCGGGTGGCTCTTTT...TGTATGATAATTGTAATGCATGCCTTCAGTTGTAAGTGGCCAGATTGCTCTACA
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000177974.8
ENSMUST00000179939.8
CDS-3UTR GCA 90 bp TCTCGTGAAGACGGATGTAAACAGAACCATCAGACCTACAGAAGAAGCCGAGCATTAGCTTTAATTCGTTaGACACTCTTTCTGTCCTGT +
Preference number: 4 (lower is better)
Translates to: SREDGCKQNHQTYRRSRALALIR*TLFLSC
Trigger: ACAGGACAGAAAGAGTGTGCAACGAATTAAAGCTAA...TGCTCGGCTTCTTCTGTAGGTCTGATGGTTCTGTTTACATCCGTCTTCACGAGA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000031423.10
ENSMUST00000179939.8
CDS-3UTR GCA 90 bp TTGGCTGATGGCTTCTGTTCTTGGATAAGGTTTCAGAACCTCCTTCTCGCAGCATTAGCTTTAATTCGTTaGACACTCTTTCTGTCCTGT +
Preference number: 4 (lower is better)
Translates to: LADGFCSWIRFQNLLLAALALIR*TLFLSC
Trigger: ACAGGACAGAAAGAGTGTGCAACGAATTAAAGCTAA...TGCTGCGAGAAGGAGGTTCTGAAACCTTATCCAAGAACAGAAGCCATCAGCCAA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000177974.8
ENSMUST00000179939.8
CDS-3UTR GCA 90 bp AAACCTCTCGTGAAGACGGATGTAAACAGAACCATCAGACCTACAGAAGAAGCCCACTTCTCCAATTGGTaGATATGTGGATCCAGTTAT +
Preference number: 4 (lower is better)
Translates to: KPLVKTDVNRTIRPTEEAHFSNW*ICGSSY
Trigger: ATAACTGGATCCACATATGCACCAATTGGAGAAGTG...GGCTTCTTCTGTAGGTCTGATGGTTCTGTTTACATCCGTCTTCACGAGAGGTTT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000031423.10
ENSMUST00000179939.8
CDS-3UTR GCA 90 bp TGCACACCTAAACAACTGAAGTTAGGACTGGAGGCCTATGTTGTAACCATTCAGGGCTTATCATCCTTTTaGACTTCTCCAATTGGTGCA +
Preference number: 4 (lower is better)
Translates to: CTPKQLKLGLEAYVVTIQGLSSF*TSPIGA
Trigger: TGCACCAATTGGAGAAGTGCAAAAGGATGATAAGCC...CTGAATGGTTACAACATAGGCCTCCAGTCCTAACTTCAGTTGTTTAGGTGTGCA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000177974.8
ENSMUST00000179939.8
CDS-3UTR GCA 90 bp GTCTGTGCAATACCTGTTACCAGCACAGAAACTGACCTCTATTTACAGACTACACGAGTTGCAGGCGTTTaGACGCTCTATTTTAGAAAG +
Preference number: 4 (lower is better)
Translates to: VCAIPVTSTETDLYLQTTRVAGV*TLYFRK
Trigger: CTTTCTAAAATAGAGCGTGCAAACGCCTGCAACTCG...TGTAGTCTGTAAATAGAGGTCAGTTTCTGTGCTGGTAACAGGTATTGCACAGAC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000177974.8
ENSMUST00000179939.8
CDS-3UTR CCA 90 bp GAAAGCATGTTTCAATGTCACTGTAGAGCAATCTGGCCACTTACAACTGAAGGCTTGCACTTCTCCAATTaGTGCATATGTGGATCCAGT +
Preference number: 4 (lower is better)
Translates to: ESMFQCHCRAIWPLTTEGLHFSN*CICGSS
Trigger: ACTGGATCCACATATGCACCAATTGGAGAAGTGCAA...GCCTTCAGTTGTAAGTGGCCAGATTGCTCTACAGTGACATTGAAACATGCTTTC
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000177974.8
ENSMUST00000179939.8
CDS-3UTR CCA 90 bp GCAATCTGGCCACTTACAACTGAAGGCATGCATTACAATTATCATACAGTTAGAGAGTCATGGGGACCTTaGTACTTCCAACTCGGATGT +
Preference number: 4 (lower is better)
Translates to: AIWPLTTEGMHYNYHTVRESWGP*YFQLGC
Trigger: ACATCCGAGTTGGAAGTACCAAGGTCCCCATGACTC...TCTAACTGTATGATAATTGTAATGCATGCCTTCAGTTGTAAGTGGCCAGATTGC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000177974.8
ENSMUST00000179939.8
CDS-3UTR CCA 90 bp AGATTTTACAAAACATACACACACATAAACACACACTTGCCCTTACACCAACCTAGGCTACTTCAATCCTaGGAGGATCCAGCATGCCCA +
Preference number: 4 (lower is better)
Translates to: RFYKTYTHINTHLPLHQPRLLQS*EDPACP
Trigger: TGGGCATGCTGGATCCTCCCAGGATTGAAGTAGCCT...AGGTTGGTGTAAGGGCAAGTGTGTGTTTATGTGTGTGTATGTTTTGTAAAATCT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000179939.8
CDS-3UTR CCA 90 bp AACGCACATGCACGCACCCGAACACCCTTATATTTCTGCAAATGGTTTAGGAAGAAGTGCCATTGTCATTaGATATGGGGACTCAAAGAT +
Preference number: 4 (lower is better)
Translates to: NAHARTRTPLYFCKWFRKKCHCH*IWGLKD
Trigger: ATCTTTGAGTCCCCATATCCAATGACAATGGCACTT...CTTCCTAAACCATTTGCAGAAATATAAGGGTGTTCGGGTGCGTGCATGTGCGTT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000177974.8
ENSMUST00000179939.8
CDS-3UTR CCA 90 bp CCACTTACAACTGAAGGCATGCATTACAATTATCATACAGTTAGAGAGGCTATGACATGGACAAGCAGATaGAGCCCACGAGCCAGATAT +
Preference number: 4 (lower is better)
Translates to: PLTTEGMHYNYHTVREAMTWTSR*SPRARY
Trigger: ATATCTGGCTCGTGGGCTCCATCTGCTTGTCCATGT...CATAGCCTCTCTAACTGTATGATAATTGTAATGCATGCCTTCAGTTGTAAGTGG
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000177974.8
ENSMUST00000179939.8
CDS-3UTR CCA 90 bp TTACAGATTTTACAAAACATACACACACATAAACACACACTTGCCCTTACACCAAGCACCATCAGCCACTaGGTCAGATTCAGCGGTGTG +
Preference number: 4 (lower is better)
Translates to: LQILQNIHTHKHTLALTPSTISH*VRFSGV
Trigger: CACACCGCTGAATCTGACCCAGTGGCTGATGGTGCT...TGGTGTAAGGGCAAGTGTGTGTTTATGTGTGTGTATGTTTTGTAAAATCTGTAA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000179939.8
3UTR CAA 72 bp CTTACACCAACCTACATACAACGGGCCAGCAGAAACTaGAGTAATGTATATCACATGACAGATCGTGCCTAT +
Preference number: 4 (lower is better)
Translates to: LTPTYIQRASRN*SNVYHMTDRAY
Trigger: ATAGGCACGATCTGTCATGTGATATACATTACTCAAGTTTCTGCTGGCCCGTTGTATGTAGGTTGGTGTAAG
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000179939.8
CDS-3UTR GCA 90 bp TGCACACAATACTTGTATTGCACCAACATCTGTCTACTGCTTCTGACTTCATTATCAGCATTTCTTTCCTaGCACACACCCACGATTGCA +
Preference number: 4 (lower is better)
Translates to: CTQYLYCTNICLLLLTSLSAFLS*HTPTIA
Trigger: TGCAATCGTGGGTGTGTGGCAGGAAAGAAATGCTGA...TAATGAAGTCAGAAGCAGTAGACAGATGTTGGTGCAATACAAGTATTGTGTGCA
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000177974.8
ENSMUST00000179939.8
CDS-3UTR GCA 90 bp CATGTCTGTGCAATACCTGTTACCAGCACAGAAACTGACCTCTATTTACAGACTCCTGTCGATACACTTTaGCCATTTCAGGCTCATATT +
Preference number: 4 (lower is better)
Translates to: HVCAIPVTSTETDLYLQTPVDTL*PFQAHI
Trigger: AATATGAGCCTGAAATGGGCAAAGTGTATCGACAGG...AGTCTGTAAATAGAGGTCAGTTTCTGTGCTGGTAACAGGTATTGCACAGACATG
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000177974.8
ENSMUST00000179939.8
CDS-3UTR GCA 90 bp GTAGATGTGTTGCTAACAACGCACATGCACGCACCCGAACACCCTTATATTTCTTTAGCTTTAATTCGTTaGACACTCTTTCTGTCCTGT +
Preference number: 4 (lower is better)
Translates to: VDVLLTTHMHAPEHPYISLALIR*TLFLSC
Trigger: ACAGGACAGAAAGAGTGTGCAACGAATTAAAGCTAA...AGAAATATAAGGGTGTTCGGGTGCGTGCATGTGCGTTGTTAGCAACACATCTAC
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000177974.8
ENSMUST00000179939.8
CDS-3UTR GCA 90 bp GAAAGCATGTTTCAATGTCACTGTAGAGCAATCTGGCCACTTACAACTGAAGGCGATAGCATTTTTCTTTaGCATCCTACGAGTTCCAAG +
Preference number: 4 (lower is better)
Translates to: ESMFQCHCRAIWPLTTEGDSIFL*HPTSSK
Trigger: CTTGGAACTCGTAGGATGGCAAAGAAAAATGCTATC...GCCTTCAGTTGTAAGTGGCCAGATTGCTCTACAGTGACATTGAAACATGCTTTC
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000177974.8
ENSMUST00000179939.8
CDS-3UTR GCA 90 bp ACTGAAGTTAGGACTGGAGGCCTATGTTGTAACCATTCAGCAGCTGTAGTGTTTCACTTCTCCAATTGGTaGATATGTGGATCCAGTTAT +
Preference number: 4 (lower is better)
Translates to: TEVRTGGLCCNHSAAVVFHFSNW*ICGSSY
Trigger: ATAACTGGATCCACATATGCACCAATTGGAGAAGTG...AAACACTACAGCTGCTGAATGGTTACAACATAGGCCTCCAGTCCTAACTTCAGT
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000177974.8
ENSMUST00000179939.8
CDS-3UTR GCA 90 bp CAAACTGTACAGGGCCCATTAGAAAGCATGTTTCAATGTCACTGTAGAGCAATCGGCTTATCATCCTTTTaGACTTCTCCAATTGGTGCA +
Preference number: 4 (lower is better)
Translates to: QTVQGPLESMFQCHCRAIGLSSF*TSPIGA
Trigger: TGCACCAATTGGAGAAGTGCAAAAGGATGATAAGCC...GATTGCTCTACAGTGACATTGAAACATGCTTTCTAATGGGCCCTGTACAGTTTG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000177974.8
ENSMUST00000179939.8
CDS-3UTR CCA 90 bp TGCACACAATACTTGTATTGCACCAACATCTGTCTACTGCTTCTGACTTCATTAATCGATGACACCTTCTaGAGCCCCCTTCACAAACAT +
Preference number: 4 (lower is better)
Translates to: CTQYLYCTNICLLLLTSLIDDTF*SPLHKH
Trigger: ATGTTTGTGAAGGGGGCTCCAGAAGGTGTCATCGAT...TAATGAAGTCAGAAGCAGTAGACAGATGTTGGTGCAATACAAGTATTGTGTGCA
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000177974.8
ENSMUST00000179939.8
3UTR CAA 72 bp AGATTTTACAAAACATACACACACATAAACACACACTaGCCCTTACACCAACCTACATACAACGGGCCAGCA +
Preference number: 4 (lower is better)
Translates to: RFYKTYTHINTH*PLHQPTYNGPA
Trigger: TGCTGGCCCGTTGTATGTAGGTTGGTGTAAGGGCAAGTGTGTGTTTATGTGTGTGTATGTTTTGTAAAATCT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000179939.8
CDS-3UTR TCA 90 bp ATGCACACAATACTTGTATTGCACCAACATCTGTCTACTGCTTCTGACTTCATTGTGAAAACTCCAGAGTaGACTCCTTCTTCATCAGCT +
Preference number: 4 (lower is better)
Translates to: MHTILVLHQHLSTASDFIVKTPE*TPSSSA
Trigger: AGCTGATGAAGAAGGAGTTCACTCTGGAGTTTTCAC...AATGAAGTCAGAAGCAGTAGACAGATGTTGGTGCAATACAAGTATTGTGTGCAT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000177974.8
ENSMUST00000179939.8
CDS-3UTR TCA 90 bp TGTAGAGCAATCTGGCCACTTACAACTGAAGGCATGCATTACAATTATCATACAGATCAAGAAGTGAAGTaGCATGGACAAGCAGATGGA +
Preference number: 4 (lower is better)
Translates to: CRAIWPLTTEGMHYNYHTDQEVK*HGQADG
Trigger: TCCATCTGCTTGTCCATGTCACTTCACTTCTTGATC...TGTATGATAATTGTAATGCATGCCTTCAGTTGTAAGTGGCCAGATTGCTCTACA
41% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000177974.8
ENSMUST00000179939.8
CDS-3UTR CCA 90 bp CACACAATACTTGTATTGCACCAACATCTGTCTACTGCTTCTGACTTCATTAAATACACAGAGCACAGATaGTGGCTAACTCTACAAGCC +
Preference number: 4 (lower is better)
Translates to: HTILVLHQHLSTASDFIKYTEHR*WLTLQA
Trigger: GGCTTGTAGAGTTAGCCACCATCTGTGCTCTGTGTA...TTTAATGAAGTCAGAAGCAGTAGACAGATGTTGGTGCAATACAAGTATTGTGTG
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000177974.8
ENSMUST00000179939.8
CDS-3UTR CCA 90 bp GGCATGCATTACAATTATCATACAGTTAGAGAGGCTATGACATTTTGCAGAGAACAAACATCTTGCTCATaGATGTCCGGCTTGGCTTGT +
Preference number: 4 (lower is better)
Translates to: GMHYNYHTVREAMTFCREQTSCS*MSGLAC
Trigger: ACAAGCCAAGCCGGACATCCATGAGCAAGATGTTTG...TTCTCTGCAAAATGTCATAGCCTCTCTAACTGTATGATAATTGTAATGCATGCC
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000177974.8
ENSMUST00000179939.8
CDS-3UTR CCA 90 bp CCATTAGAAAGCATGTTTCAATGTCACTGTAGAGCAATCTGGCCACTTACAACTACAATCTTAGACTTGTaGGAAGGTTCAACTCGAGCA +
Preference number: 4 (lower is better)
Translates to: PLESMFQCHCRAIWPLTTTILDL*EGSTRA
Trigger: TGCTCGAGTTGAACCTTCCCACAAGTCTAAGATTGT...AGTTGTAAGTGGCCAGATTGCTCTACAGTGACATTGAAACATGCTTTCTAATGG
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000177974.8
ENSMUST00000179939.8
CDS-3UTR CCA 90 bp TCGCAGCAAAGAAACCAACTTCTCTGGAGAGGCTCTCTGATTTGTTATGCTAAACATTGTCATTGGATATaGGGACTCAAAGATTGCACA +
Preference number: 4 (lower is better)
Translates to: SQQRNQLLWRGSLICYAKHCHWI*GLKDCT
Trigger: TGTGCAATCTTTGAGTCCCCATATCCAATGACAATG...TTTAGCATAACAAATCAGAGAGCCTCTCCAGAGAAGTTGGTTTCTTTGCTGCGA
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000177974.8
ENSMUST00000179939.8
CDS-3UTR CCA 90 bp AAACCTCTCGTGAAGACGGATGTAAACAGAACCATCAGACCTACAGAAGAAGCCCATTACACATCTCTATaGTTACTAGAACAGAAAGTG +
Preference number: 4 (lower is better)
Translates to: KPLVKTDVNRTIRPTEEAHYTSL*LLEQKV
Trigger: CACTTTCTGTTCTAGTAACCATAGAGATGTGTAATG...GGCTTCTTCTGTAGGTCTGATGGTTCTGTTTACATCCGTCTTCACGAGAGGTTT
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000031423.10
ENSMUST00000179939.8
CDS-3UTR CCA 90 bp GCAGAGAAATGTGGAGACTTGGCTGATGGCTTCTGTTCTTGGATAAGGTTTCAGCATTACACATCTCTATaGTTACTAGAACAGAAAGTG +
Preference number: 4 (lower is better)
Translates to: AEKCGDLADGFCSWIRFQHYTSL*LLEQKV
Trigger: CACTTTCTGTTCTAGTAACCATAGAGATGTGTAATG...CTGAAACCTTATCCAAGAACAGAAGCCATCAGCCAAGTCTCCACATTTCTCTGC
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000177974.8
ENSMUST00000179939.8
CDS-3UTR CCA 90 bp CACACAATACTTGTATTGCACCAACATCTGTCTACTGCTTCTGACTTCATTAAATTCAGCGGTGTGATCTaGAAAATGAGCGGCAAAGGT +
Preference number: 4 (lower is better)
Translates to: HTILVLHQHLSTASDFIKFSGVI*KMSGKG
Trigger: ACCTTTGCCGCTCATTTTCCAGATCACACCGCTGAA...TTTAATGAAGTCAGAAGCAGTAGACAGATGTTGGTGCAATACAAGTATTGTGTG
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000177974.8
ENSMUST00000179939.8
CDS-3UTR TCA 90 bp ATGCACACAATACTTGTATTGCACCAACATCTGTCTACTGCTTCTGACTTCATTTTTCAGACAAGCTGTTaGGGGCATTACACATCTCTA +
Preference number: 4 (lower is better)
Translates to: MHTILVLHQHLSTASDFIFQTSC*GHYTSL
Trigger: TAGAGATGTGTAATGCCCTCAACAGCTTGTCTGAAA...AATGAAGTCAGAAGCAGTAGACAGATGTTGGTGCAATACAAGTATTGTGTGCAT
40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000177974.8
ENSMUST00000179939.8
CDS-3UTR CCA 90 bp TGTGCTATTTACAGATTTTACAAAACATACACACACATAAACACACACTTGCCCATCGATGACACCTTCTaGAGCCCCCTTCACAAACAT +
Preference number: 4 (lower is better)
Translates to: CAIYRFYKTYTHINTHLPIDDTF*SPLHKH
Trigger: ATGTTTGTGAAGGGGGCTCCAGAAGGTGTCATCGAT...GGGCAAGTGTGTGTTTATGTGTGTGTATGTTTTGTAAAATCTGTAAATAGCACA
40% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000179939.8
CDS-3UTR CCA 90 bp ACACAATACTTGTATTGCACCAACATCTGTCTACTGCTTCTGACTTCATTAAATAAGCAGGCATCTCTCTaGGCTGAAGGGCTTAATTCA +
Preference number: 4 (lower is better)
Translates to: TQYLYCTNICLLLLTSLNKQASL*AEGLNS
Trigger: TGAATTAAGCCCTTCAGCCCAGAGAGATGCCTGCTT...ATTTAATGAAGTCAGAAGCAGTAGACAGATGTTGGTGCAATACAAGTATTGTGT
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000177974.8
ENSMUST00000179939.8
CDS-3UTR CCA 90 bp TGTGCTATTTACAGATTTTACAAAACATACACACACATAAACACACACTTGCCCAAGCAGGCATCTCTCTaGGCTGAAGGGCTTAATTCA +
Preference number: 4 (lower is better)
Translates to: CAIYRFYKTYTHINTHLPKQASL*AEGLNS
Trigger: TGAATTAAGCCCTTCAGCCCAGAGAGATGCCTGCTT...GGGCAAGTGTGTGTTTATGTGTGTGTATGTTTTGTAAAATCTGTAAATAGCACA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000179939.8
CDS-3UTR CCA 90 bp GAAAGCATGTTTCAATGTCACTGTAGAGCAATCTGGCCACTTACAACTGAAGGCCATTACACATCTCTATaGTTACTAGAACAGAAAGTG +
Preference number: 4 (lower is better)
Translates to: ESMFQCHCRAIWPLTTEGHYTSL*LLEQKV
Trigger: CACTTTCTGTTCTAGTAACCATAGAGATGTGTAATG...GCCTTCAGTTGTAAGTGGCCAGATTGCTCTACAGTGACATTGAAACATGCTTTC
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000177974.8
ENSMUST00000179939.8
CDS-3UTR TCA 90 bp GGCATGCATTACAATTATCATACAGTTAGAGAGGCTATGACATTTTGCAGAGAATTTCAGACAAGCTGTTaGGGGCATTACACATCTCTA +
Preference number: 4 (lower is better)
Translates to: GMHYNYHTVREAMTFCREFQTSC*GHYTSL
Trigger: TAGAGATGTGTAATGCCCTCAACAGCTTGTCTGAAA...TTCTCTGCAAAATGTCATAGCCTCTCTAACTGTATGATAATTGTAATGCATGCC
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000177974.8
ENSMUST00000179939.8
CDS-3UTR GCA 90 bp GCAATCTGGCCACTTACAACTGAAGGCATGCATTACAATTATCATACAGTTAGAGATAGCATTTTTCTTTaGCATCCTACGAGTTCCAAG +
Preference number: 4 (lower is better)
Translates to: AIWPLTTEGMHYNYHTVRDSIFL*HPTSSK
Trigger: CTTGGAACTCGTAGGATGGCAAAGAAAAATGCTATC...TCTAACTGTATGATAATTGTAATGCATGCCTTCAGTTGTAAGTGGCCAGATTGC
39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000177974.8
ENSMUST00000179939.8
CDS-3UTR GCA 90 bp ATGCACACAATACTTGTATTGCACCAACATCTGTCTACTGCTTCTGACTTCATTCACTTCTCCAATTGGTaGATATGTGGATCCAGTTAT +
Preference number: 4 (lower is better)
Translates to: MHTILVLHQHLSTASDFIHFSNW*ICGSSY
Trigger: ATAACTGGATCCACATATGCACCAATTGGAGAAGTG...AATGAAGTCAGAAGCAGTAGACAGATGTTGGTGCAATACAAGTATTGTGTGCAT
39% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000177974.8
ENSMUST00000179939.8
CDS-3UTR CCA 90 bp ACACAATACTTGTATTGCACCAACATCTGTCTACTGCTTCTGACTTCATTAAATAAGTGCCATTGTCATTaGATATGGGGACTCAAAGAT +
Preference number: 4 (lower is better)
Translates to: TQYLYCTNICLLLLTSLNKCHCH*IWGLKD
Trigger: ATCTTTGAGTCCCCATATCCAATGACAATGGCACTT...ATTTAATGAAGTCAGAAGCAGTAGACAGATGTTGGTGCAATACAAGTATTGTGT
37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000177974.8
ENSMUST00000179939.8
CDS-3UTR CAA 90 bp CTCGTGAAGACGGATGTAAACAGAACCATCAGACCTACAGAAGAAGCCGAGCAGAGCCCCGTGCTCTCGTaGACCCCGAAGTGGCCCAGC +
Preference number: 5 (lower is better)
Translates to: LVKTDVNRTIRPTEEAEQSPVLS*TPKWPS
Trigger: GCTGGGCCACTTCGGGGTCAACGAGAGCACGGGGCT...CTGCTCGGCTTCTTCTGTAGGTCTGATGGTTCTGTTTACATCCGTCTTCACGAG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000031423.10
ENSMUST00000179939.8
CDS-3UTR CAA 90 bp GAAGACGGATGTAAACAGAACCATCAGACCTACAGAAGAAGCCGAGCAGGCTGGGCAGACCCTCAGGGATaGCGGCAACAGCCAGGGCCA +
Preference number: 5 (lower is better)
Translates to: EDGCKQNHQTYRRSRAGWADPQG*RQQPGP
Trigger: TGGCCCTGGCTGTTGCCGCAATCCCTGAGGGTCTGC...CCAGCCTGCTCGGCTTCTTCTGTAGGTCTGATGGTTCTGTTTACATCCGTCTTC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000031423.10
ENSMUST00000179939.8
CDS-3UTR CAA 90 bp GAAGACGGATGTAAACAGAACCATCAGACCTACAGAAGAAGCCGAGCAGGCTGGGACCCGGATGCCTGCTaGCCGGCACAGCTTCACAGA +
Preference number: 5 (lower is better)
Translates to: EDGCKQNHQTYRRSRAGWDPDAC*PAQLHR
Trigger: TCTGTGAAGCTGTGCCGGCAAGCAGGCATCCGGGTC...CCAGCCTGCTCGGCTTCTTCTGTAGGTCTGATGGTTCTGTTTACATCCGTCTTC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000031423.10
ENSMUST00000179939.8
CDS-3UTR CAA 90 bp CTCCTTCTCGCAGCAAAGAAACCAACTTCTCTGGAGAGGCTCTCTGATTTGTTAAGCCCCGTGCTCTCGTaGACCCCGAAGTGGCCCAGC +
Preference number: 5 (lower is better)
Translates to: LLLAAKKPTSLERLSDLLSPVLS*TPKWPS
Trigger: GCTGGGCCACTTCGGGGTCAACGAGAGCACGGGGCT...TAACAAATCAGAGAGCCTCTCCAGAGAAGTTGGTTTCTTTGCTGCGAGAAGGAG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000177974.8
ENSMUST00000179939.8
CDS-3UTR CAA 90 bp TTGGCTGATGGCTTCTGTTCTTGGATAAGGTTTCAGAACCTCCTTCTCGCAGCAGCAGACCCTCAGGGATaGCGGCAACAGCCAGGGCCA +
Preference number: 5 (lower is better)
Translates to: LADGFCSWIRFQNLLLAAADPQG*RQQPGP
Trigger: TGGCCCTGGCTGTTGCCGCAATCCCTGAGGGTCTGC...TGCTGCGAGAAGGAGGTTCTGAAACCTTATCCAAGAACAGAAGCCATCAGCCAA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000177974.8
ENSMUST00000179939.8
CDS CCA 90 bp TTGACACCAGGAGTCATGGGGACCTTGGTACTTCCAACTCGGATGTaGGTGCACCTATCGATGACACCTTCTGGAGCCCCCTTCACAAAC +
Preference number: 5 (lower is better)
Translates to: LTPGVMGTLVLPTRM*VHLSMTPSGAPFTN
Trigger: GTTTGTGAAGGGGGCTCCAGAAGGTGTCATCGATAGGTGCACCCACATCCGAGTTGGAAGTACCAAGGTCCCCATGACTCCTGGTGTCAA
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000031423.10
ENSMUST00000177974.8
ENSMUST00000179939.8
CDS-3UTR CAA 90 bp GCACAGAAACTGACCTCTATTTACAGACTACAGTCAAACATGCGCTGTGAGAAGAGCCCCGTGCTCTCGTaGACCCCGAAGTGGCCCAGC +
Preference number: 5 (lower is better)
Translates to: AQKLTSIYRLQSNMRCEKSPVLS*TPKWPS
Trigger: GCTGGGCCACTTCGGGGTCAACGAGAGCACGGGGCT...CTTCTCACAGCGCATGTTTGACTGTAGTCTGTAAATAGAGGTCAGTTTCTGTGC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000177974.8
ENSMUST00000179939.8
CDS-3UTR CAA 90 bp AAACCTCTCGTGAAGACGGATGTAAACAGAACCATCAGACCTACAGAAGAAGCCGCAGACCCTCAGGGATaGCGGCAACAGCCAGGGCCA +
Preference number: 5 (lower is better)
Translates to: KPLVKTDVNRTIRPTEEAADPQG*RQQPGP
Trigger: TGGCCCTGGCTGTTGCCGCAATCCCTGAGGGTCTGC...GGCTTCTTCTGTAGGTCTGATGGTTCTGTTTACATCCGTCTTCACGAGAGGTTT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000031423.10
ENSMUST00000179939.8
CDS-3UTR CAA 90 bp TCTCGTGAAGACGGATGTAAACAGAACCATCAGACCTACAGAAGAAGCCGAGCAGACCCGGATGCCTGCTaGCCGGCACAGCTTCACAGA +
Preference number: 5 (lower is better)
Translates to: SREDGCKQNHQTYRRSRADPDAC*PAQLHR
Trigger: TCTGTGAAGCTGTGCCGGCAAGCAGGCATCCGGGTC...TGCTCGGCTTCTTCTGTAGGTCTGATGGTTCTGTTTACATCCGTCTTCACGAGA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000031423.10
ENSMUST00000179939.8
CDS-3UTR CAA 90 bp ACCTCTCGTGAAGACGGATGTAAACAGAACCATCAGACCTACAGAAGAAGCCGAGGTAGAAGGAGACTCTaGGACCGCCGTCAGCAGCGA +
Preference number: 5 (lower is better)
Translates to: TSREDGCKQNHQTYRRSRGRRRL*DRRQQR
Trigger: TCGCTGCTGACGGCGGTCCAAGAGTCTCCTTCTACC...TCGGCTTCTTCTGTAGGTCTGATGGTTCTGTTTACATCCGTCTTCACGAGAGGT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000031423.10
ENSMUST00000179939.8
CDS-3UTR CAA 90 bp CTCGTGAAGACGGATGTAAACAGAACCATCAGACCTACAGAAGAAGCCGAGCAGCTCTCCTTGAGCTTCTaGACCTGCTCCAAGCTCAGC +
Preference number: 5 (lower is better)
Translates to: LVKTDVNRTIRPTEEAEQLSLSF*TCSKLS
Trigger: GCTGAGCTTGGAGCAGGTCAAGAAGCTCAAGGAGAG...CTGCTCGGCTTCTTCTGTAGGTCTGATGGTTCTGTTTACATCCGTCTTCACGAG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000031423.10
ENSMUST00000179939.8
CDS-3UTR CAA 90 bp ACCTCCTTCTCGCAGCAAAGAAACCAACTTCTCTGGAGAGGCTCTCTGATTTGTTCAGCCGGCAATTCGTaGGAGCCCCATCTCTCCTTG +
Preference number: 5 (lower is better)
Translates to: TSFSQQRNQLLWRGSLICSAGNS*EPHLSL
Trigger: CAAGGAGAGATGGGGCTCCAACGAATTGCCGGCTGA...ACAAATCAGAGAGCCTCTCCAGAGAAGTTGGTTTCTTTGCTGCGAGAAGGAGGT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000177974.8
ENSMUST00000179939.8
CDS-3UTR CAA 90 bp ACCTCTCGTGAAGACGGATGTAAACAGAACCATCAGACCTACAGAAGAAGCCGATCAGCCGGCAATTCGTaGGAGCCCCATCTCTCCTTG +
Preference number: 5 (lower is better)
Translates to: TSREDGCKQNHQTYRRSRSAGNS*EPHLSL
Trigger: CAAGGAGAGATGGGGCTCCAACGAATTGCCGGCTGA...TCGGCTTCTTCTGTAGGTCTGATGGTTCTGTTTACATCCGTCTTCACGAGAGGT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000031423.10
ENSMUST00000179939.8
CDS-3UTR CAA 90 bp GAAGACGGATGTAAACAGAACCATCAGACCTACAGAAGAAGCCGAGCAGGCTGGCCATCGAAGTCTGGGTaGTCCTCCTTACACTGTAGG +
Preference number: 5 (lower is better)
Translates to: EDGCKQNHQTYRRSRAGWPSKSG*SSLHCR
Trigger: CCTACAGTGTAAGGAGGACAACCCAGACTTCGATGG...CCAGCCTGCTCGGCTTCTTCTGTAGGTCTGATGGTTCTGTTTACATCCGTCTTC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000031423.10
ENSMUST00000179939.8
CDS-3UTR CAA 90 bp AAACCTCTCGTGAAGACGGATGTAAACAGAACCATCAGACCTACAGAAGAAGCCTCAGCCGGCAATTCGTaGGAGCCCCATCTCTCCTTG +
Preference number: 5 (lower is better)
Translates to: KPLVKTDVNRTIRPTEEASAGNS*EPHLSL
Trigger: CAAGGAGAGATGGGGCTCCAACGAATTGCCGGCTGA...GGCTTCTTCTGTAGGTCTGATGGTTCTGTTTACATCCGTCTTCACGAGAGGTTT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000031423.10
ENSMUST00000179939.8
CDS-3UTR CAA 90 bp TCTCGTGAAGACGGATGTAAACAGAACCATCAGACCTACAGAAGAAGCCGAGCAGGAGTCATGGGGACCTaGGTACTTCCAACTCGGATG +
Preference number: 5 (lower is better)
Translates to: SREDGCKQNHQTYRRSRAGVMGT*VLPTRM
Trigger: CATCCGAGTTGGAAGTACCAAGGTCCCCATGACTCC...TGCTCGGCTTCTTCTGTAGGTCTGATGGTTCTGTTTACATCCGTCTTCACGAGA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000031423.10
ENSMUST00000179939.8
CDS-3UTR CAA 90 bp CAAACTGTACAGGGCCCATTAGAAAGCATGTTTCAATGTCACTGTAGAGCAATCGACCCGGATGCCTGCTaGCCGGCACAGCTTCACAGA +
Preference number: 5 (lower is better)
Translates to: QTVQGPLESMFQCHCRAIDPDAC*PAQLHR
Trigger: TCTGTGAAGCTGTGCCGGCAAGCAGGCATCCGGGTC...GATTGCTCTACAGTGACATTGAAACATGCTTTCTAATGGGCCCTGTACAGTTTG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000177974.8
ENSMUST00000179939.8
CDS-3UTR CAA 90 bp GAAAGCATGTTTCAATGTCACTGTAGAGCAATCTGGCCACTTACAACTGAAGGCGGTAGAAGGAGACTCTaGGACCGCCGTCAGCAGCGA +
Preference number: 5 (lower is better)
Translates to: ESMFQCHCRAIWPLTTEGGRRRL*DRRQQR
Trigger: TCGCTGCTGACGGCGGTCCAAGAGTCTCCTTCTACC...GCCTTCAGTTGTAAGTGGCCAGATTGCTCTACAGTGACATTGAAACATGCTTTC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000177974.8
ENSMUST00000179939.8
CDS-3UTR CAA 90 bp CCTCTCGTGAAGACGGATGTAAACAGAACCATCAGACCTACAGAAGAAGCCGAGACACTCTTTACCGGGTaGTTCCAGGTAGTTTCGGGC +
Preference number: 5 (lower is better)
Translates to: PLVKTDVNRTIRPTEEAETLFTG*FQVVSG
Trigger: GCCCGAAACTACCTGGAACAACCCGGTAAAGAGTGT...CTCGGCTTCTTCTGTAGGTCTGATGGTTCTGTTTACATCCGTCTTCACGAGAGG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000031423.10
ENSMUST00000179939.8
CDS GCA 90 bp CACCATTTCATCCCGGATCTTGCCGATCTCAGTATTAACTCCAGTTaGCACCACCACTCCCATAGCTTTCCCAGCAGCAATGTTTGTACC +
Preference number: 5 (lower is better)
Translates to: HHFIPDLADLSINSS*HHHSHSFPSSNVCT
Trigger: GGTACAAACATTGCTGCTGGGAAAGCTATGGGAGTGGTGGTGGCAACTGGAGTTAATACTGAGATCGGCAAGATCCGGGATGAAATGGTG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000031423.10
ENSMUST00000177974.8
ENSMUST00000179939.8
CDS CCA 90 bp GGTTCAACTCGAGCAAAACAGCGGGCATTTAAGCAGGCATCTCTCTaGGCTGAAGGGCTTAATTCATCAAACTCTCGCCCTGTAAAAGCC +
Preference number: 5 (lower is better)
Translates to: GSTRAKQRAFKQASL*AEGLNSSNSRPVKA
Trigger: GGCTTTTACAGGGCGAGAGTTTGATGAATTAAGCCCTTCAGCCCAGAGAGATGCCTGCTTAAATGCCCGCTGTTTTGCTCGAGTTGAACC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000031423.10
ENSMUST00000177974.8
ENSMUST00000179939.8
CDS-3UTR CAA 90 bp GTAGATGTGTTGCTAACAACGCACATGCACGCACCCGAACACCCTTATATTTCTCTCTCCTTGAGCTTCTaGACCTGCTCCAAGCTCAGC +
Preference number: 5 (lower is better)
Translates to: VDVLLTTHMHAPEHPYISLSLSF*TCSKLS
Trigger: GCTGAGCTTGGAGCAGGTCAAGAAGCTCAAGGAGAG...AGAAATATAAGGGTGTTCGGGTGCGTGCATGTGCGTTGTTAGCAACACATCTAC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000177974.8
ENSMUST00000179939.8
CDS-3UTR CAA 90 bp CCTCTCGTGAAGACGGATGTAAACAGAACCATCAGACCTACAGAAGAAGCCGAGTTCTCTCCTGTTCTGTaGCCACCATTTCATCCCGGA +
Preference number: 5 (lower is better)
Translates to: PLVKTDVNRTIRPTEEAEFSPVL*PPFHPG
Trigger: TCCGGGATGAAATGGTGGCAACAGAACAGGAGAGAA...CTCGGCTTCTTCTGTAGGTCTGATGGTTCTGTTTACATCCGTCTTCACGAGAGG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000031423.10
ENSMUST00000179939.8
CDS-3UTR CAA 90 bp GAAGACGGATGTAAACAGAACCATCAGACCTACAGAAGAAGCCGAGCAGGCTGGGACATAATCTTCTGTTaGACACCAGGAGTCATGGGG +
Preference number: 5 (lower is better)
Translates to: EDGCKQNHQTYRRSRAGWDIIFC*TPGVMG
Trigger: CCCCATGACTCCTGGTGTCAAACAGAAGATTATGTC...CCAGCCTGCTCGGCTTCTTCTGTAGGTCTGATGGTTCTGTTTACATCCGTCTTC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000031423.10
ENSMUST00000179939.8
CDS-3UTR CAA 90 bp CCTCTCGTGAAGACGGATGTAAACAGAACCATCAGACCTACAGAAGAAGCCGAGCCATCTGTCACCAGATaGACCCAGAGTAACTGGACA +
Preference number: 5 (lower is better)
Translates to: PLVKTDVNRTIRPTEEAEPSVTR*TQSNWT
Trigger: TGTCCAGTTACTCTGGGTCAATCTGGTGACAGATGG...CTCGGCTTCTTCTGTAGGTCTGATGGTTCTGTTTACATCCGTCTTCACGAGAGG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000031423.10
ENSMUST00000179939.8
CDS-3UTR CAA 90 bp GGTTTCAGAACCTCCTTCTCGCAGCAAAGAAACCAACTTCTCTGGAGAGGCTCTCCATCTGTCACCAGATaGACCCAGAGTAACTGGACA +
Preference number: 5 (lower is better)
Translates to: GFRTSFSQQRNQLLWRGSPSVTR*TQSNWT
Trigger: TGTCCAGTTACTCTGGGTCAATCTGGTGACAGATGG...AGAGCCTCTCCAGAGAAGTTGGTTTCTTTGCTGCGAGAAGGAGGTTCTGAAACC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000177974.8
ENSMUST00000179939.8
CDS-3UTR CAA 90 bp ACCTCCTTCTCGCAGCAAAGAAACCAACTTCTCTGGAGAGGCTCTCTGATTTGTCCATCGAAGTCTGGGTaGTCCTCCTTACACTGTAGG +
Preference number: 5 (lower is better)
Translates to: TSFSQQRNQLLWRGSLICPSKSG*SSLHCR
Trigger: CCTACAGTGTAAGGAGGACAACCCAGACTTCGATGG...ACAAATCAGAGAGCCTCTCCAGAGAAGTTGGTTTCTTTGCTGCGAGAAGGAGGT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000177974.8
ENSMUST00000179939.8
CDS-3UTR CAA 90 bp GAAGACGGATGTAAACAGAACCATCAGACCTACAGAAGAAGCCGAGCAGGCTGGGTGTCACCTTCTACTTaGTCCAGAATGAACATCCTG +
Preference number: 5 (lower is better)
Translates to: EDGCKQNHQTYRRSRAGWVSPST*SRMNIL
Trigger: CAGGATGTTCATTCTGGACAAAGTAGAAGGTGACAC...CCAGCCTGCTCGGCTTCTTCTGTAGGTCTGATGGTTCTGTTTACATCCGTCTTC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000031423.10
ENSMUST00000179939.8
CDS-3UTR CAA 90 bp ACCTCTCGTGAAGACGGATGTAAACAGAACCATCAGACCTACAGAAGAAGCCGACCCTTCACAAACATCTaGCTCATGGATGTCCGGCTT +
Preference number: 5 (lower is better)
Translates to: TSREDGCKQNHQTYRRSRPFTNI*LMDVRL
Trigger: AAGCCGGACATCCATGAGCAAGATGTTTGTGAAGGG...TCGGCTTCTTCTGTAGGTCTGATGGTTCTGTTTACATCCGTCTTCACGAGAGGT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000031423.10
ENSMUST00000179939.8
CDS-3UTR CAA 90 bp ACCTCCTTCTCGCAGCAAAGAAACCAACTTCTCTGGAGAGGCTCTCTGATTTGTCCATCTGTCACCAGATaGACCCAGAGTAACTGGACA +
Preference number: 5 (lower is better)
Translates to: TSFSQQRNQLLWRGSLICPSVTR*TQSNWT
Trigger: TGTCCAGTTACTCTGGGTCAATCTGGTGACAGATGG...ACAAATCAGAGAGCCTCTCCAGAGAAGTTGGTTTCTTTGCTGCGAGAAGGAGGT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000177974.8
ENSMUST00000179939.8
CDS-3UTR CAA 90 bp GTAGATGTGTTGCTAACAACGCACATGCACGCACCCGAACACCCTTATATTTCTACACTCTTTACCGGGTaGTTCCAGGTAGTTTCGGGC +
Preference number: 5 (lower is better)
Translates to: VDVLLTTHMHAPEHPYISTLFTG*FQVVSG
Trigger: GCCCGAAACTACCTGGAACAACCCGGTAAAGAGTGT...AGAAATATAAGGGTGTTCGGGTGCGTGCATGTGCGTTGTTAGCAACACATCTAC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000179939.8
CDS-3UTR CAA 90 bp GAAGACGGATGTAAACAGAACCATCAGACCTACAGAAGAAGCCGAGCAGGCTGGATATCAGCAGGAACTTaGTCACCAACAGCAATTTCC +
Preference number: 5 (lower is better)
Translates to: EDGCKQNHQTYRRSRAGWISAGT*SPTAIS
Trigger: GGAAATTGCTGTTGGTGACAAAGTTCCTGCTGATAT...CCAGCCTGCTCGGCTTCTTCTGTAGGTCTGATGGTTCTGTTTACATCCGTCTTC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000031423.10
ENSMUST00000179939.8
CDS-3UTR CAA 90 bp GGTTTCAGAACCTCCTTCTCGCAGCAAAGAAACCAACTTCTCTGGAGAGGCTCTTCCCAGCAGCAATGTTaGTACCAGAAAAGAGCATGT +
Preference number: 5 (lower is better)
Translates to: GFRTSFSQQRNQLLWRGSSQQQC*YQKRAC
Trigger: ACATGCTCTTTTCTGGTACAAACATTGCTGCTGGGA...AGAGCCTCTCCAGAGAAGTTGGTTTCTTTGCTGCGAGAAGGAGGTTCTGAAACC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000177974.8
ENSMUST00000179939.8
CDS-3UTR CAA 90 bp ACCTCTCGTGAAGACGGATGTAAACAGAACCATCAGACCTACAGAAGAAGCCGAATGAGGGAGATAACTTaGGAAAGCTGCTCCCCAAAC +
Preference number: 5 (lower is better)
Translates to: TSREDGCKQNHQTYRRSRMREIT*ESCSPN
Trigger: GTTTGGGGAGCAGCTTTCCAAAGTTATCTCCCTCAT...TCGGCTTCTTCTGTAGGTCTGATGGTTCTGTTTACATCCGTCTTCACGAGAGGT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000031423.10
ENSMUST00000179939.8
CDS-3UTR CAA 90 bp TTGGCTGATGGCTTCTGTTCTTGGATAAGGTTTCAGAACCTCCTTCTCGCAGCAATGAGGGAGATAACTTaGGAAAGCTGCTCCCCAAAC +
Preference number: 5 (lower is better)
Translates to: LADGFCSWIRFQNLLLAAMREIT*ESCSPN
Trigger: GTTTGGGGAGCAGCTTTCCAAAGTTATCTCCCTCAT...TGCTGCGAGAAGGAGGTTCTGAAACCTTATCCAAGAACAGAAGCCATCAGCCAA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000177974.8
ENSMUST00000179939.8
CDS-3UTR CAA 90 bp CTCGTGAAGACGGATGTAAACAGAACCATCAGACCTACAGAAGAAGCCGAGCAGTTTGCACTTCTCCAATaGGTGCATATGTGGATCCAG +
Preference number: 5 (lower is better)
Translates to: LVKTDVNRTIRPTEEAEQFALLQ*VHMWIQ
Trigger: CTGGATCCACATATGCACCAATTGGAGAAGTGCAAA...CTGCTCGGCTTCTTCTGTAGGTCTGATGGTTCTGTTTACATCCGTCTTCACGAG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000031423.10
ENSMUST00000179939.8
CDS-3UTR CAA 90 bp TGGCTTCTGTTCTTGGATAAGGTTTCAGAACCTCCTTCTCGCAGCAAAGAAACCCCCTTCACAAACATCTaGCTCATGGATGTCCGGCTT +
Preference number: 5 (lower is better)
Translates to: WLLFLDKVSEPPSRSKETPFTNI*LMDVRL
Trigger: AAGCCGGACATCCATGAGCAAGATGTTTGTGAAGGG...GGTTTCTTTGCTGCGAGAAGGAGGTTCTGAAACCTTATCCAAGAACAGAAGCCA
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000177974.8
ENSMUST00000179939.8
CDS-3UTR CAA 90 bp CAAACTGTACAGGGCCCATTAGAAAGCATGTTTCAATGTCACTGTAGAGCAATCGGAGTCATGGGGACCTaGGTACTTCCAACTCGGATG +
Preference number: 5 (lower is better)
Translates to: QTVQGPLESMFQCHCRAIGVMGT*VLPTRM
Trigger: CATCCGAGTTGGAAGTACCAAGGTCCCCATGACTCC...GATTGCTCTACAGTGACATTGAAACATGCTTTCTAATGGGCCCTGTACAGTTTG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000177974.8
ENSMUST00000179939.8
CDS-3UTR CAA 90 bp GCAATCTGGCCACTTACAACTGAAGGCATGCATTACAATTATCATACAGTTAGAGGTAGAAGGAGACTCTaGGACCGCCGTCAGCAGCGA +
Preference number: 5 (lower is better)
Translates to: AIWPLTTEGMHYNYHTVRGRRRL*DRRQQR
Trigger: TCGCTGCTGACGGCGGTCCAAGAGTCTCCTTCTACC...TCTAACTGTATGATAATTGTAATGCATGCCTTCAGTTGTAAGTGGCCAGATTGC
48% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000177974.8
ENSMUST00000179939.8
CDS-3UTR CAA 90 bp ATACAACGGGCCAGCAGAAACTTGAGTAATGTATATCACATGACAGATCGTGCCCCATCGAAGTCTGGGTaGTCCTCCTTACACTGTAGG +
Preference number: 5 (lower is better)
Translates to: IQRASRNLSNVYHMTDRAPSKSG*SSLHCR
Trigger: CCTACAGTGTAAGGAGGACAACCCAGACTTCGATGG...GGCACGATCTGTCATGTGATATACATTACTCAAGTTTCTGCTGGCCCGTTGTAT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000179939.8
CDS-3UTR CAA 90 bp ACCTCTCGTGAAGACGGATGTAAACAGAACCATCAGACCTACAGAAGAAGCCGAATGGGGACTCAAAGATaGCACAATCCACTCCATCGA +
Preference number: 5 (lower is better)
Translates to: TSREDGCKQNHQTYRRSRMGTQR*HNPLHR
Trigger: TCGATGGAGTGGATTGTGCAATCTTTGAGTCCCCAT...TCGGCTTCTTCTGTAGGTCTGATGGTTCTGTTTACATCCGTCTTCACGAGAGGT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000031423.10
ENSMUST00000179939.8
CDS-3UTR CAA 90 bp TCTCGTGAAGACGGATGTAAACAGAACCATCAGACCTACAGAAGAAGCCGAGCATCCTGTCGATACACTTaGCCCATTTCAGGCTCATAT +
Preference number: 5 (lower is better)
Translates to: SREDGCKQNHQTYRRSRASCRYT*PISGSY
Trigger: ATATGAGCCTGAAATGGGCAAAGTGTATCGACAGGA...TGCTCGGCTTCTTCTGTAGGTCTGATGGTTCTGTTTACATCCGTCTTCACGAGA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000031423.10
ENSMUST00000179939.8
CDS-3UTR CAA 90 bp AGACTGACCTTGAACATGCGCAAACGTTCATCAGTCATGGTGGTGGTGGTTAGTTCCTGTCGATACACTTaGCCCATTTCAGGCTCATAT +
Preference number: 5 (lower is better)
Translates to: RLTLNMRKRSSVMVVVVSSCRYT*PISGSY
Trigger: ATATGAGCCTGAAATGGGCAAAGTGTATCGACAGGA...ACTAACCACCACCACCATGACTGATGAACGTTTGCGCATGTTCAAGGTCAGTCT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000179939.8
CDS-3UTR CAA 90 bp CTCGTGAAGACGGATGTAAACAGAACCATCAGACCTACAGAAGAAGCCGAGCAGATTTCATCCCGGATCTaGCCGATCTCAGTATTAACT +
Preference number: 5 (lower is better)
Translates to: LVKTDVNRTIRPTEEAEQISSRI*PISVLT
Trigger: AGTTAATACTGAGATCGGCAAGATCCGGGATGAAAT...CTGCTCGGCTTCTTCTGTAGGTCTGATGGTTCTGTTTACATCCGTCTTCACGAG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000031423.10
ENSMUST00000179939.8
CDS-3UTR CAA 90 bp ACTGAAGTTAGGACTGGAGGCCTATGTTGTAACCATTCAGCAGCTGTAGTGTTTTTCTCTCCTGTTCTGTaGCCACCATTTCATCCCGGA +
Preference number: 5 (lower is better)
Translates to: TEVRTGGLCCNHSAAVVFFSPVL*PPFHPG
Trigger: TCCGGGATGAAATGGTGGCAACAGAACAGGAGAGAA...AAACACTACAGCTGCTGAATGGTTACAACATAGGCCTCCAGTCCTAACTTCAGT
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000177974.8
ENSMUST00000179939.8
CDS-3UTR CAA 90 bp AGACTGACCTTGAACATGCGCAAACGTTCATCAGTCATGGTGGTGGTGGTTAGTTTTGCACTTCTCCAATaGGTGCATATGTGGATCCAG +
Preference number: 5 (lower is better)
Translates to: RLTLNMRKRSSVMVVVVSFALLQ*VHMWIQ
Trigger: CTGGATCCACATATGCACCAATTGGAGAAGTGCAAA...ACTAACCACCACCACCATGACTGATGAACGTTTGCGCATGTTCAAGGTCAGTCT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000179939.8
CDS-3UTR CAA 90 bp TGCACACCTAAACAACTGAAGTTAGGACTGGAGGCCTATGTTGTAACCATTCAGCCCTTCACAAACATCTaGCTCATGGATGTCCGGCTT +
Preference number: 5 (lower is better)
Translates to: CTPKQLKLGLEAYVVTIQPFTNI*LMDVRL
Trigger: AAGCCGGACATCCATGAGCAAGATGTTTGTGAAGGG...CTGAATGGTTACAACATAGGCCTCCAGTCCTAACTTCAGTTGTTTAGGTGTGCA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000177974.8
ENSMUST00000179939.8
CDS-3UTR CAA 90 bp CTCGTGAAGACGGATGTAAACAGAACCATCAGACCTACAGAAGAAGCCGAGCAGTCAACAATCTTAGACTaGTGGGAAGGTTCAACTCGA +
Preference number: 5 (lower is better)
Translates to: LVKTDVNRTIRPTEEAEQSTILD*WEGSTR
Trigger: TCGAGTTGAACCTTCCCACAAGTCTAAGATTGTTGA...CTGCTCGGCTTCTTCTGTAGGTCTGATGGTTCTGTTTACATCCGTCTTCACGAG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000031423.10
ENSMUST00000179939.8
CDS-3UTR CAA 90 bp CTCGTGAAGACGGATGTAAACAGAACCATCAGACCTACAGAAGAAGCCGAGCAGTTTTCAGACAAGCTGTaGAGGGCATTACACATCTCT +
Preference number: 5 (lower is better)
Translates to: LVKTDVNRTIRPTEEAEQFSDKL*RALHIS
Trigger: AGAGATGTGTAATGCCCTCAACAGCTTGTCTGAAAA...CTGCTCGGCTTCTTCTGTAGGTCTGATGGTTCTGTTTACATCCGTCTTCACGAG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000031423.10
ENSMUST00000179939.8
CDS TCA 90 bp TTACACAGAGCACAGATGGTGGCTAACTCTACAAGCCCGTCATACTaGTGGCACTTCACTGGCTTATCATCCTTTTGCACTTCTCCAATT +
Preference number: 5 (lower is better)
Translates to: LHRAQMVANSTSPSY*WHFTGLSSFCTSPI
Trigger: AATTGGAGAAGTGCAAAAGGATGATAAGCCAGTGAAGTGCCATCAGTATGACGGGCTTGTAGAGTTAGCCACCATCTGTGCTCTGTGTAA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000031423.10
ENSMUST00000177974.8
ENSMUST00000179939.8
CDS-3UTR CAA 90 bp ACCTCTCGTGAAGACGGATGTAAACAGAACCATCAGACCTACAGAAGAAGCCGAATATCAGCAGGAACTTaGTCACCAACAGCAATTTCC +
Preference number: 5 (lower is better)
Translates to: TSREDGCKQNHQTYRRSRISAGT*SPTAIS
Trigger: GGAAATTGCTGTTGGTGACAAAGTTCCTGCTGATAT...TCGGCTTCTTCTGTAGGTCTGATGGTTCTGTTTACATCCGTCTTCACGAGAGGT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000031423.10
ENSMUST00000179939.8
CDS-3UTR CAA 90 bp AAACCTCTCGTGAAGACGGATGTAAACAGAACCATCAGACCTACAGAAGAAGCCTCCCAGCAGCAATGTTaGTACCAGAAAAGAGCATGT +
Preference number: 5 (lower is better)
Translates to: KPLVKTDVNRTIRPTEEASQQQC*YQKRAC
Trigger: ACATGCTCTTTTCTGGTACAAACATTGCTGCTGGGA...GGCTTCTTCTGTAGGTCTGATGGTTCTGTTTACATCCGTCTTCACGAGAGGTTT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000031423.10
ENSMUST00000179939.8
CDS-3UTR CAA 90 bp ACCTCTCGTGAAGACGGATGTAAACAGAACCATCAGACCTACAGAAGAAGCCGATTGAAATGCCCAATGTaGATGATCCAGACTGCAATG +
Preference number: 5 (lower is better)
Translates to: TSREDGCKQNHQTYRRSRLKCPM*MIQTAM
Trigger: CATTGCAGTCTGGATCATCAACATTGGGCATTTCAA...TCGGCTTCTTCTGTAGGTCTGATGGTTCTGTTTACATCCGTCTTCACGAGAGGT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000031423.10
ENSMUST00000179939.8
CDS-3UTR CAA 90 bp ACCTCTCGTGAAGACGGATGTAAACAGAACCATCAGACCTACAGAAGAAGCCGATCAACAATCTTAGACTaGTGGGAAGGTTCAACTCGA +
Preference number: 5 (lower is better)
Translates to: TSREDGCKQNHQTYRRSRSTILD*WEGSTR
Trigger: TCGAGTTGAACCTTCCCACAAGTCTAAGATTGTTGA...TCGGCTTCTTCTGTAGGTCTGATGGTTCTGTTTACATCCGTCTTCACGAGAGGT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000031423.10
ENSMUST00000179939.8
CDS-3UTR CAA 90 bp GAAAGCATGTTTCAATGTCACTGTAGAGCAATCTGGCCACTTACAACTGAAGGCATGGGGACTCAAAGATaGCACAATCCACTCCATCGA +
Preference number: 5 (lower is better)
Translates to: ESMFQCHCRAIWPLTTEGMGTQR*HNPLHR
Trigger: TCGATGGAGTGGATTGTGCAATCTTTGAGTCCCCAT...GCCTTCAGTTGTAAGTGGCCAGATTGCTCTACAGTGACATTGAAACATGCTTTC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000177974.8
ENSMUST00000179939.8
CDS-3UTR CAA 90 bp TGTAGAGCAATCTGGCCACTTACAACTGAAGGCATGCATTACAATTATCATACACTCCAGTATTGCGGGTaGTTCCAGGTAGTTTCGGGC +
Preference number: 5 (lower is better)
Translates to: CRAIWPLTTEGMHYNYHTLQYCG*FQVVSG
Trigger: GCCCGAAACTACCTGGAACAACCCGCAATACTGGAG...TGTATGATAATTGTAATGCATGCCTTCAGTTGTAAGTGGCCAGATTGCTCTACA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000177974.8
CDS-3UTR CAA 90 bp TCTCGTGAAGACGGATGTAAACAGAACCATCAGACCTACAGAAGAAGCCGAGCATTTAGCTTTAATTCGTaGCACACTCTTTCTGTCCTG +
Preference number: 5 (lower is better)
Translates to: SREDGCKQNHQTYRRSRAFSFNS*HTLSVL
Trigger: CAGGACAGAAAGAGTGTGCAACGAATTAAAGCTAAA...TGCTCGGCTTCTTCTGTAGGTCTGATGGTTCTGTTTACATCCGTCTTCACGAGA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000031423.10
ENSMUST00000179939.8
CDS-3UTR CAA 90 bp GCACAGAAACTGACCTCTATTTACAGACTACAGTCAAACATGCGCTGTGAGAAGTCCCAGCAGCAATGTTaGTACCAGAAAAGAGCATGT +
Preference number: 5 (lower is better)
Translates to: AQKLTSIYRLQSNMRCEKSQQQC*YQKRAC
Trigger: ACATGCTCTTTTCTGGTACAAACATTGCTGCTGGGA...CTTCTCACAGCGCATGTTTGACTGTAGTCTGTAAATAGAGGTCAGTTTCTGTGC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000177974.8
ENSMUST00000179939.8
CDS-3UTR CAA 90 bp AACGCACATGCACGCACCCGAACACCCTTATATTTCTGCAAATGGTTTAGGAAGATTTCATCCCGGATCTaGCCGATCTCAGTATTAACT +
Preference number: 5 (lower is better)
Translates to: NAHARTRTPLYFCKWFRKISSRI*PISVLT
Trigger: AGTTAATACTGAGATCGGCAAGATCCGGGATGAAAT...CTTCCTAAACCATTTGCAGAAATATAAGGGTGTTCGGGTGCGTGCATGTGCGTT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000177974.8
ENSMUST00000179939.8
CDS-3UTR CAA 90 bp GCAGAGAAATGTGGAGACTTGGCTGATGGCTTCTGTTCTTGGATAAGGTTTCAGTTGAAATGCCCAATGTaGATGATCCAGACTGCAATG +
Preference number: 5 (lower is better)
Translates to: AEKCGDLADGFCSWIRFQLKCPM*MIQTAM
Trigger: CATTGCAGTCTGGATCATCAACATTGGGCATTTCAA...CTGAAACCTTATCCAAGAACAGAAGCCATCAGCCAAGTCTCCACATTTCTCTGC
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000177974.8
ENSMUST00000179939.8
CDS-3UTR CAA 90 bp TGCACACCTAAACAACTGAAGTTAGGACTGGAGGCCTATGTTGTAACCATTCAGGTGTCACCTTCTACTTaGTCCAGAATGAACATCCTG +
Preference number: 5 (lower is better)
Translates to: CTPKQLKLGLEAYVVTIQVSPST*SRMNIL
Trigger: CAGGATGTTCATTCTGGACAAAGTAGAAGGTGACAC...CTGAATGGTTACAACATAGGCCTCCAGTCCTAACTTCAGTTGTTTAGGTGTGCA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000177974.8
ENSMUST00000179939.8
CDS-3UTR CAA 90 bp GTCTGTGCAATACCTGTTACCAGCACAGAAACTGACCTCTATTTACAGACTACAATGGGGACTCAAAGATaGCACAATCCACTCCATCGA +
Preference number: 5 (lower is better)
Translates to: VCAIPVTSTETDLYLQTTMGTQR*HNPLHR
Trigger: TCGATGGAGTGGATTGTGCAATCTTTGAGTCCCCAT...TGTAGTCTGTAAATAGAGGTCAGTTTCTGTGCTGGTAACAGGTATTGCACAGAC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000177974.8
ENSMUST00000179939.8
CDS-3UTR CAA 90 bp AAACCTCTCGTGAAGACGGATGTAAACAGAACCATCAGACCTACAGAAGAAGCCAAAGTGCCATTGTCATaGGATATGGGGACTCAAAGA +
Preference number: 5 (lower is better)
Translates to: KPLVKTDVNRTIRPTEEAKVPLS*DMGTQR
Trigger: TCTTTGAGTCCCCATATCCAATGACAATGGCACTTT...GGCTTCTTCTGTAGGTCTGATGGTTCTGTTTACATCCGTCTTCACGAGAGGTTT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000031423.10
ENSMUST00000179939.8
CDS-3UTR CAA 90 bp GATAAGGTTTCAGAACCTCCTTCTCGCAGCAAAGAAACCAACTTCTCTGGAGAGAAAGTGCCATTGTCATaGGATATGGGGACTCAAAGA +
Preference number: 5 (lower is better)
Translates to: DKVSEPPSRSKETNFSGEKVPLS*DMGTQR
Trigger: TCTTTGAGTCCCCATATCCAATGACAATGGCACTTT...CTCTCCAGAGAAGTTGGTTTCTTTGCTGCGAGAAGGAGGTTCTGAAACCTTATC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000177974.8
ENSMUST00000179939.8
CDS CCA 90 bp CTGATGGCACTTCACTGGCTTATCATCCTTTTGCACTTCTCCAATTaGTGCATATGTGGATCCAGTTATGCTGAACTCATTAAGGGAACA +
Preference number: 5 (lower is better)
Translates to: LMALHWLIILLHFSN*CICGSSYAELIKGT
Trigger: TGTTCCCTTAATGAGTTCAGCATAACTGGATCCACATATGCACCAATTGGAGAAGTGCAAAAGGATGATAAGCCAGTGAAGTGCCATCAG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000031423.10
ENSMUST00000177974.8
ENSMUST00000179939.8
CDS-3UTR CAA 90 bp GTCTGTGCAATACCTGTTACCAGCACAGAAACTGACCTCTATTTACAGACTACATCCTGTCGATACACTTaGCCCATTTCAGGCTCATAT +
Preference number: 5 (lower is better)
Translates to: VCAIPVTSTETDLYLQTTSCRYT*PISGSY
Trigger: ATATGAGCCTGAAATGGGCAAAGTGTATCGACAGGA...TGTAGTCTGTAAATAGAGGTCAGTTTCTGTGCTGGTAACAGGTATTGCACAGAC
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000177974.8
ENSMUST00000179939.8
CDS-3UTR CAA 90 bp GCAGAGAAATGTGGAGACTTGGCTGATGGCTTCTGTTCTTGGATAAGGTTTCAGTTTAGCTTTAATTCGTaGCACACTCTTTCTGTCCTG +
Preference number: 5 (lower is better)
Translates to: AEKCGDLADGFCSWIRFQFSFNS*HTLSVL
Trigger: CAGGACAGAAAGAGTGTGCAACGAATTAAAGCTAAA...CTGAAACCTTATCCAAGAACAGAAGCCATCAGCCAAGTCTCCACATTTCTCTGC
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000177974.8
ENSMUST00000179939.8
CDS-3UTR CAA 90 bp TCGCAGCAAAGAAACCAACTTCTCTGGAGAGGCTCTCTGATTTGTTATGCTAAATTTGCACTTCTCCAATaGGTGCATATGTGGATCCAG +
Preference number: 5 (lower is better)
Translates to: SQQRNQLLWRGSLICYAKFALLQ*VHMWIQ
Trigger: CTGGATCCACATATGCACCAATTGGAGAAGTGCAAA...TTTAGCATAACAAATCAGAGAGCCTCTCCAGAGAAGTTGGTTTCTTTGCTGCGA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000177974.8
ENSMUST00000179939.8
CDS-3UTR CAA 90 bp ACACAATACTTGTATTGCACCAACATCTGTCTACTGCTTCTGACTTCATTAAATGGAGTCATGGGGACCTaGGTACTTCCAACTCGGATG +
Preference number: 5 (lower is better)
Translates to: TQYLYCTNICLLLLTSLNGVMGT*VLPTRM
Trigger: CATCCGAGTTGGAAGTACCAAGGTCCCCATGACTCC...ATTTAATGAAGTCAGAAGCAGTAGACAGATGTTGGTGCAATACAAGTATTGTGT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000177974.8
ENSMUST00000179939.8
CDS-3UTR CAA 90 bp TGCACACCTAAACAACTGAAGTTAGGACTGGAGGCCTATGTTGTAACCATTCAGAAAGTGCCATTGTCATaGGATATGGGGACTCAAAGA +
Preference number: 5 (lower is better)
Translates to: CTPKQLKLGLEAYVVTIQKVPLS*DMGTQR
Trigger: TCTTTGAGTCCCCATATCCAATGACAATGGCACTTT...CTGAATGGTTACAACATAGGCCTCCAGTCCTAACTTCAGTTGTTTAGGTGTGCA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000177974.8
ENSMUST00000179939.8
CDS GCA 90 bp ATGGCACTTCACTGGCTTATCATCCTTTTGCACTTCTCCAATTGGTaGATATGTGGATCCAGTTATGCTGAACTCATTAAGGGAACAAGT +
Preference number: 5 (lower is better)
Translates to: MALHWLIILLHFSNW*ICGSSYAELIKGTS
Trigger: ACTTGTTCCCTTAATGAGTTCAGCATAACTGGATCCACATATGCACCAATTGGAGAAGTGCAAAAGGATGATAAGCCAGTGAAGTGCCAT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000031423.10
ENSMUST00000177974.8
ENSMUST00000179939.8
CDS-3UTR CAA 90 bp GTCTGTGCAATACCTGTTACCAGCACAGAAACTGACCTCTATTTACAGACTACAATATCAGCAGGAACTTaGTCACCAACAGCAATTTCC +
Preference number: 5 (lower is better)
Translates to: VCAIPVTSTETDLYLQTTISAGT*SPTAIS
Trigger: GGAAATTGCTGTTGGTGACAAAGTTCCTGCTGATAT...TGTAGTCTGTAAATAGAGGTCAGTTTCTGTGCTGGTAACAGGTATTGCACAGAC
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000177974.8
ENSMUST00000179939.8
CDS-3UTR CAA 90 bp CACACAATACTTGTATTGCACCAACATCTGTCTACTGCTTCTGACTTCATTAAATTCTCTCCTGTTCTGTaGCCACCATTTCATCCCGGA +
Preference number: 5 (lower is better)
Translates to: HTILVLHQHLSTASDFIKFSPVL*PPFHPG
Trigger: TCCGGGATGAAATGGTGGCAACAGAACAGGAGAGAA...TTTAATGAAGTCAGAAGCAGTAGACAGATGTTGGTGCAATACAAGTATTGTGTG
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000177974.8
ENSMUST00000179939.8
CDS-3UTR CAA 90 bp ATGCACACAATACTTGTATTGCACCAACATCTGTCTACTGCTTCTGACTTCATTGACATAATCTTCTGTTaGACACCAGGAGTCATGGGG +
Preference number: 5 (lower is better)
Translates to: MHTILVLHQHLSTASDFIDIIFC*TPGVMG
Trigger: CCCCATGACTCCTGGTGTCAAACAGAAGATTATGTC...AATGAAGTCAGAAGCAGTAGACAGATGTTGGTGCAATACAAGTATTGTGTGCAT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000177974.8
ENSMUST00000179939.8
CDS GCA 90 bp ATTTCCACTATATCACCAGGAACTATGTCTTTAGCTTTAATTCGTTaGACACTCTTTCTGTCCTGTCGATACACTTTGCCCATTTCAGGC +
Preference number: 5 (lower is better)
Translates to: ISTISPGTMSLALIR*TLFLSCRYTLPISG
Trigger: GCCTGAAATGGGCAAAGTGTATCGACAGGACAGAAAGAGTGTGCAACGAATTAAAGCTAAAGACATAGTTCCTGGTGATATAGTGGAAAT
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000031423.10
ENSMUST00000177974.8
ENSMUST00000179939.8
CDS-3UTR CAA 90 bp GGCATGCATTACAATTATCATACAGTTAGAGAGGCTATGACATTTTGCAGAGAAATGAGGGAGATAACTTaGGAAAGCTGCTCCCCAAAC +
Preference number: 5 (lower is better)
Translates to: GMHYNYHTVREAMTFCREMREIT*ESCSPN
Trigger: GTTTGGGGAGCAGCTTTCCAAAGTTATCTCCCTCAT...TTCTCTGCAAAATGTCATAGCCTCTCTAACTGTATGATAATTGTAATGCATGCC
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000177974.8
ENSMUST00000179939.8
CDS-3UTR CAA 90 bp CCATTAGAAAGCATGTTTCAATGTCACTGTAGAGCAATCTGGCCACTTACAACTTCAACAATCTTAGACTaGTGGGAAGGTTCAACTCGA +
Preference number: 5 (lower is better)
Translates to: PLESMFQCHCRAIWPLTTSTILD*WEGSTR
Trigger: TCGAGTTGAACCTTCCCACAAGTCTAAGATTGTTGA...AGTTGTAAGTGGCCAGATTGCTCTACAGTGACATTGAAACATGCTTTCTAATGG
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000177974.8
ENSMUST00000179939.8
CDS-3UTR CAA 90 bp TTACAGATTTTACAAAACATACACACACATAAACACACACTTGCCCTTACACCAGACATAATCTTCTGTTaGACACCAGGAGTCATGGGG +
Preference number: 5 (lower is better)
Translates to: LQILQNIHTHKHTLALTPDIIFC*TPGVMG
Trigger: CCCCATGACTCCTGGTGTCAAACAGAAGATTATGTC...TGGTGTAAGGGCAAGTGTGTGTTTATGTGTGTGTATGTTTTGTAAAATCTGTAA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000179939.8
CDS-3UTR CAA 90 bp ATGCACACAATACTTGTATTGCACCAACATCTGTCTACTGCTTCTGACTTCATTTTTTCAGACAAGCTGTaGAGGGCATTACACATCTCT +
Preference number: 5 (lower is better)
Translates to: MHTILVLHQHLSTASDFIFSDKL*RALHIS
Trigger: AGAGATGTGTAATGCCCTCAACAGCTTGTCTGAAAA...AATGAAGTCAGAAGCAGTAGACAGATGTTGGTGCAATACAAGTATTGTGTGCAT
40% GC, longest homopolymer 6 nt, total homopolymer stretches 6 nt.
Matches the following 2 transcripts:
ENSMUST00000177974.8
ENSMUST00000179939.8
CDS-3UTR CAA 90 bp GGCATGCATTACAATTATCATACAGTTAGAGAGGCTATGACATTTTGCAGAGAAATTTCATCCCGGATCTaGCCGATCTCAGTATTAACT +
Preference number: 5 (lower is better)
Translates to: GMHYNYHTVREAMTFCREISSRI*PISVLT
Trigger: AGTTAATACTGAGATCGGCAAGATCCGGGATGAAAT...TTCTCTGCAAAATGTCATAGCCTCTCTAACTGTATGATAATTGTAATGCATGCC
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000177974.8
ENSMUST00000179939.8
CDS-3UTR CAA 90 bp TGTGCTATTTACAGATTTTACAAAACATACACACACATAAACACACACTTGCCCGTGTCACCTTCTACTTaGTCCAGAATGAACATCCTG +
Preference number: 5 (lower is better)
Translates to: CAIYRFYKTYTHINTHLPVSPST*SRMNIL
Trigger: CAGGATGTTCATTCTGGACAAAGTAGAAGGTGACAC...GGGCAAGTGTGTGTTTATGTGTGTGTATGTTTTGTAAAATCTGTAAATAGCACA
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000179939.8
CDS-3UTR CAA 90 bp CACACAATACTTGTATTGCACCAACATCTGTCTACTGCTTCTGACTTCATTAAATTTTCAGACAAGCTGTaGAGGGCATTACACATCTCT +
Preference number: 5 (lower is better)
Translates to: HTILVLHQHLSTASDFIKFSDKL*RALHIS
Trigger: AGAGATGTGTAATGCCCTCAACAGCTTGTCTGAAAA...TTTAATGAAGTCAGAAGCAGTAGACAGATGTTGGTGCAATACAAGTATTGTGTG
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000177974.8
ENSMUST00000179939.8
CDS-3UTR CAA 90 bp AGATTTTACAAAACATACACACACATAAACACACACTTGCCCTTACACCAACCTTTTAGCTTTAATTCGTaGCACACTCTTTCTGTCCTG +
Preference number: 5 (lower is better)
Translates to: RFYKTYTHINTHLPLHQPFSFNS*HTLSVL
Trigger: CAGGACAGAAAGAGTGTGCAACGAATTAAAGCTAAA...AGGTTGGTGTAAGGGCAAGTGTGTGTTTATGTGTGTGTATGTTTTGTAAAATCT
38% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000179939.8
CDS-3UTR CAA 90 bp TTACAGATTTTACAAAACATACACACACATAAACACACACTTGCCCTTACACCATTGAAATGCCCAATGTaGATGATCCAGACTGCAATG +
Preference number: 5 (lower is better)
Translates to: LQILQNIHTHKHTLALTPLKCPM*MIQTAM
Trigger: CATTGCAGTCTGGATCATCAACATTGGGCATTTCAA...TGGTGTAAGGGCAAGTGTGTGTTTATGTGTGTGTATGTTTTGTAAAATCTGTAA
38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000179939.8
CDS CCA 72 bp GGTGCATCTCCTCTCTCTTCAGTGGGTTGTCATGAGTaGCCAGAGCCAGGCACCGTAGCGTGTCGCTGCCAC +
Preference number: 6 (lower is better)
Translates to: GASPLSSVGCHE*PEPGTVACRCH
Trigger: GTGGCAGCGACACGCTACGGTGCCTGGCTCTGGCCACTCATGACAACCCACTGAAGAGAGAGGAGATGCACC
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000031423.10
ENSMUST00000177974.8
ENSMUST00000179939.8
CDS CCA 72 bp GGAGTCATGGGGACCTTGGTACTTCCAACTCGGATGTaGGTGCACCTATCGATGACACCTTCTGGAGCCCCC +
Preference number: 6 (lower is better)
Translates to: GVMGTLVLPTRM*VHLSMTPSGAP
Trigger: GGGGGCTCCAGAAGGTGTCATCGATAGGTGCACCCACATCCGAGTTGGAAGTACCAAGGTCCCCATGACTCC
58% GC, longest homopolymer 5 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000031423.10
ENSMUST00000177974.8
ENSMUST00000179939.8
CDS CAA 72 bp GGCAATTCGTTGGAGCCCCATCTCTCCTTGAGCTTCTaGACCTGCTCCAAGCTCAGCCCCGTGCTCTCGTTG +
Preference number: 6 (lower is better)
Translates to: GNSLEPHLSLSF*TCSKLSPVLSL
Trigger: CAACGAGAGCACGGGGCTGAGCTTGGAGCAGGTCAAGAAGCTCAAGGAGAGATGGGGCTCCAACGAATTGCC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000031423.10
ENSMUST00000177974.8
ENSMUST00000179939.8
CDS GCA 72 bp CAGAAGAGGCTACTTCAATCCTGGGAGGATCCAGCATaGCCACACAGCCGACGAAAGTCAGGTTGGTCTCGT +
Preference number: 6 (lower is better)
Translates to: QKRLLQSWEDPA*PHSRRKSGWSR
Trigger: ACGAGACCAACCTGACTTTCGTCGGCTGTGTGGGCATGCTGGATCCTCCCAGGATTGAAGTAGCCTCTTCTG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000031423.10
ENSMUST00000177974.8
ENSMUST00000179939.8
CDS CAA 90 bp TCGCTGCCACTGCCCCACTCCCGAATGACAGACATAATCTTCTGTTaGACACCAGGAGTCATGGGGACCTTGGTACTTCCAACTCGGATG +
Preference number: 6 (lower is better)
Translates to: SLPLPHSRMTDIIFC*TPGVMGTLVLPTRM
Trigger: CATCCGAGTTGGAAGTACCAAGGTCCCCATGACTCCTGGTGTCAAACAGAAGATTATGTCTGTCATTCGGGAGTGGGGCAGTGGCAGCGA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000031423.10
ENSMUST00000177974.8
ENSMUST00000179939.8
CDS TCA 72 bp TGGTACTTCCAACTCGGATGTGGGTGCACCTATCGATaGCACCTTCTGGAGCCCCCTTCACAAACATCTTGC +
Preference number: 6 (lower is better)
Translates to: WYFQLGCGCTYR*HLLEPPSQTSC
Trigger: GCAAGATGTTTGTGAAGGGGGCTCCAGAAGGTGTCATCGATAGGTGCACCCACATCCGAGTTGGAAGTACCA
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000031423.10
ENSMUST00000177974.8
ENSMUST00000179939.8
CDS CAA 72 bp TCCAGCAAGGTTTTTCCTTCTTCAGCCGGCAATTCGTaGGAGCCCCATCTCTCCTTGAGCTTCTTGACCTGC +
Preference number: 6 (lower is better)
Translates to: SSKVFPSSAGNS*EPHLSLSFLTC
Trigger: GCAGGTCAAGAAGCTCAAGGAGAGATGGGGCTCCAACGAATTGCCGGCTGAAGAAGGAAAAACCTTGCTGGA
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000031423.10
ENSMUST00000177974.8
ENSMUST00000179939.8
CDS CAA 72 bp TCGATGACACCTTCTGGAGCCCCCTTCACAAACATCTaGCTCATGGATGTCCGGCTTGGCTTGTTTGGGGTA +
Preference number: 6 (lower is better)
Translates to: SMTPSGAPFTNI*LMDVRLGLFGV
Trigger: TACCCCAAACAAGCCAAGCCGGACATCCATGAGCAAGATGTTTGTGAAGGGGGCTCCAGAAGGTGTCATCGA
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000031423.10
ENSMUST00000177974.8
ENSMUST00000179939.8
CDS GCA 72 bp ATCCCGGATCTTGCCGATCTCAGTATTAACTCCAGTTaGCACCACCACTCCCATAGCTTTCCCAGCAGCAAT +
Preference number: 6 (lower is better)
Translates to: IPDLADLSINSS*HHHSHSFPSSN
Trigger: ATTGCTGCTGGGAAAGCTATGGGAGTGGTGGTGGCAACTGGAGTTAATACTGAGATCGGCAAGATCCGGGAT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000031423.10
ENSMUST00000177974.8
ENSMUST00000179939.8
CDS CCA 72 bp CGAGCAAAACAGCGGGCATTTAAGCAGGCATCTCTCTaGGCTGAAGGGCTTAATTCATCAAACTCTCGCCCT +
Preference number: 6 (lower is better)
Translates to: RAKQRAFKQASL*AEGLNSSNSRP
Trigger: AGGGCGAGAGTTTGATGAATTAAGCCCTTCAGCCCAGAGAGATGCCTGCTTAAATGCCCGCTGTTTTGCTCG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000031423.10
ENSMUST00000177974.8
ENSMUST00000179939.8
CDS CAA 72 bp CTGCCCCACTCCCGAATGACAGACATAATCTTCTGTTaGACACCAGGAGTCATGGGGACCTTGGTACTTCCA +
Preference number: 6 (lower is better)
Translates to: LPHSRMTDIIFC*TPGVMGTLVLP
Trigger: TGGAAGTACCAAGGTCCCCATGACTCCTGGTGTCAAACAGAAGATTATGTCTGTCATTCGGGAGTGGGGCAG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000031423.10
ENSMUST00000177974.8
ENSMUST00000179939.8
CDS CAA 72 bp ATAATCTTCTGTTTGACACCAGGAGTCATGGGGACCTaGGTACTTCCAACTCGGATGTGGGTGCACCTATCG +
Preference number: 6 (lower is better)
Translates to: IIFCLTPGVMGT*VLPTRMWVHLS
Trigger: CGATAGGTGCACCCACATCCGAGTTGGAAGTACCAAGGTCCCCATGACTCCTGGTGTCAAACAGAAGATTAT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000031423.10
ENSMUST00000177974.8
ENSMUST00000179939.8
CDS CAA 90 bp ATGACAGACATAATCTTCTGTTTGACACCAGGAGTCATGGGGACCTaGGTACTTCCAACTCGGATGTGGGTGCACCTATCGATGACACCT +
Preference number: 6 (lower is better)
Translates to: MTDIIFCLTPGVMGT*VLPTRMWVHLSMTP
Trigger: AGGTGTCATCGATAGGTGCACCCACATCCGAGTTGGAAGTACCAAGGTCCCCATGACTCCTGGTGTCAAACAGAAGATTATGTCTGTCAT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000031423.10
ENSMUST00000177974.8
ENSMUST00000179939.8
CDS TCA 72 bp GCACAGATGGTGGCTAACTCTACAAGCCCGTCATACTaGTGGCACTTCACTGGCTTATCATCCTTTTGCACT +
Preference number: 6 (lower is better)
Translates to: AQMVANSTSPSY*WHFTGLSSFCT
Trigger: AGTGCAAAAGGATGATAAGCCAGTGAAGTGCCATCAGTATGACGGGCTTGTAGAGTTAGCCACCATCTGTGC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000031423.10
ENSMUST00000177974.8
ENSMUST00000179939.8
CDS GCA 72 bp CTTCATCAGCTGCTTTATGACCGAGTTGCAGGCGTTTaGACGCTCTATTTTAGAAAGCCCCTTCAGCTCAGT +
Preference number: 6 (lower is better)
Translates to: LHQLLYDRVAGV*TLYFRKPLQLS
Trigger: ACTGAGCTGAAGGGGCTTTCTAAAATAGAGCGTGCAAACGCCTGCAACTCGGTCATAAAGCAGCTGATGAAG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000031423.10
ENSMUST00000177974.8
ENSMUST00000179939.8
CDS GCA 72 bp AAGTGCCATTGTCATTGGATATGGGGACTCAAAGATTaGACAATCCACTCCATCGAAGTCTGGGTTGTCCTC +
Preference number: 6 (lower is better)
Translates to: KCHCHWIWGLKD*TIHSIEVWVVL
Trigger: GAGGACAACCCAGACTTCGATGGAGTGGATTGTGCAATCTTTGAGTCCCCATATCCAATGACAATGGCACTT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000031423.10
ENSMUST00000177974.8
ENSMUST00000179939.8
CDS CAA 72 bp TCAGCATTTCTTTCCTGCCACACACCCACGATTGCATaGGCTACCAAGATAAGCAGAATTACAAACGGCTCT +
Preference number: 6 (lower is better)
Translates to: SAFLSCHTPTIA*ATKISRITNGS
Trigger: AGAGCCGTTTGTAATTCTGCTTATCTTGGTAGCCAATGCAATCGTGGGTGTGTGGCAGGAAAGAAATGCTGA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000031423.10
ENSMUST00000177974.8
ENSMUST00000179939.8
CDS CAA 72 bp CTGAACTCATTAAGGGAACAAGTGTCACCTTCTACTTaGTCCAGAATGAACATCCTGCACACGGACATCTGG +
Preference number: 6 (lower is better)
Translates to: LNSLREQVSPST*SRMNILHTDIW
Trigger: CCAGATGTCCGTGTGCAGGATGTTCATTCTGGACAAAGTAGAAGGTGACACTTGTTCCCTTAATGAGTTCAG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000031423.10
ENSMUST00000177974.8
ENSMUST00000179939.8
CDS CAA 72 bp CAAACATCTTGCTCATGGATGTCCGGCTTGGCTTGTTaGGGGTACAATAGACGGACATTGATTTTCTATCCC +
Preference number: 6 (lower is better)
Translates to: QTSCSWMSGLAC*GYNRRTLIFYP
Trigger: GGGATAGAAAATCAATGTCCGTCTATTGTACCCCAAACAAGCCAAGCCGGACATCCATGAGCAAGATGTTTG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000031423.10
ENSMUST00000177974.8
ENSMUST00000179939.8
CDS CAA 90 bp CCAGTTATGCTGAACTCATTAAGGGAACAAGTGTCACCTTCTACTTaGTCCAGAATGAACATCCTGCACACGGACATCTGGTTTGTGGTA +
Preference number: 6 (lower is better)
Translates to: PVMLNSLREQVSPST*SRMNILHTDIWFVV
Trigger: TACCACAAACCAGATGTCCGTGTGCAGGATGTTCATTCTGGACAAAGTAGAAGGTGACACTTGTTCCCTTAATGAGTTCAGCATAACTGG
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000031423.10
ENSMUST00000177974.8
ENSMUST00000179939.8
CDS CAA 90 bp TACAAGCCCGTCATACTGATGGCACTTCACTGGCTTATCATCCTTTaGCACTTCTCCAATTGGTGCATATGTGGATCCAGTTATGCTGAA +
Preference number: 6 (lower is better)
Translates to: YKPVILMALHWLIIL*HFSNWCICGSSYAE
Trigger: TTCAGCATAACTGGATCCACATATGCACCAATTGGAGAAGTGCAAAAGGATGATAAGCCAGTGAAGTGCCATCAGTATGACGGGCTTGTA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000031423.10
ENSMUST00000177974.8
ENSMUST00000179939.8
CDS CAA 72 bp GTCATACTGATGGCACTTCACTGGCTTATCATCCTTTaGCACTTCTCCAATTGGTGCATATGTGGATCCAGT +
Preference number: 6 (lower is better)
Translates to: VILMALHWLIIL*HFSNWCICGSS
Trigger: ACTGGATCCACATATGCACCAATTGGAGAAGTGCAAAAGGATGATAAGCCAGTGAAGTGCCATCAGTATGAC
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000031423.10
ENSMUST00000177974.8
ENSMUST00000179939.8
CDS CCA 72 bp TTGATGACGGAGACAGATTCACCTGTAAGAATTGACTaGTCGACTCTTAGAGTTGTAGACTTGATGGATGTC +
Preference number: 6 (lower is better)
Translates to: LMTETDSPVRID*STLRVVDLMDV
Trigger: GACATCCATCAAGTCTACAACTCTAAGAGTCGACCAGTCAATTCTTACAGGTGAATCTGTCTCCGTCATCAA
43% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000031423.10
ENSMUST00000177974.8
ENSMUST00000179939.8
CDS GCA 72 bp ATATCACCAGGAACTATGTCTTTAGCTTTAATTCGTTaGACACTCTTTCTGTCCTGTCGATACACTTTGCCC +
Preference number: 6 (lower is better)
Translates to: ISPGTMSLALIR*TLFLSCRYTLP
Trigger: GGGCAAAGTGTATCGACAGGACAGAAAGAGTGTGCAACGAATTAAAGCTAAAGACATAGTTCCTGGTGATAT
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000031423.10
ENSMUST00000177974.8
ENSMUST00000179939.8
CDS CAA 72 bp TCTCTATGGTTACTAGAACAGAAAGTGCCATTGTCATaGGATATGGGGACTCAAAGATTGCACAATCCACTC +
Preference number: 6 (lower is better)
Translates to: SLWLLEQKVPLS*DMGTQRLHNPL
Trigger: GAGTGGATTGTGCAATCTTTGAGTCCCCATATCCAATGACAATGGCACTTTCTGTTCTAGTAACCATAGAGA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000031423.10
ENSMUST00000177974.8
ENSMUST00000179939.8
CDS CAA 90 bp CATTACACATCTCTATGGTTACTAGAACAGAAAGTGCCATTGTCATaGGATATGGGGACTCAAAGATTGCACAATCCACTCCATCGAAGT +
Preference number: 6 (lower is better)
Translates to: HYTSLWLLEQKVPLS*DMGTQRLHNPLHRS
Trigger: ACTTCGATGGAGTGGATTGTGCAATCTTTGAGTCCCCATATCCAATGACAATGGCACTTTCTGTTCTAGTAACCATAGAGATGTGTAATG
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000031423.10
ENSMUST00000177974.8
ENSMUST00000179939.8
CDS CAA 90 bp AATTTCCACTATATCACCAGGAACTATGTCTTTAGCTTTAATTCGTaGCACACTCTTTCTGTCCTGTCGATACACTTTGCCCATTTCAGG +
Preference number: 6 (lower is better)
Translates to: NFHYITRNYVFSFNS*HTLSVLSIHFAHFR
Trigger: CCTGAAATGGGCAAAGTGTATCGACAGGACAGAAAGAGTGTGCAACGAATTAAAGCTAAAGACATAGTTCCTGGTGATATAGTGGAAATT
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000031423.10
ENSMUST00000177974.8
ENSMUST00000179939.8
CDS CAA 90 bp GATTCACCTGTAAGAATTGACTGGTCGACTCTTAGAGTTGTAGACTaGATGGATGTCAATCTAATATCAGCAGGAACTTTGTCACCAACA +
Preference number: 6 (lower is better)
Translates to: DSPVRIDWSTLRVVD*MDVNLISAGTLSPT
Trigger: TGTTGGTGACAAAGTTCCTGCTGATATTAGATTGACATCCATCAAGTCTACAACTCTAAGAGTCGACCAGTCAATTCTTACAGGTGAATC
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000031423.10
ENSMUST00000177974.8
ENSMUST00000179939.8
CDS CAA 72 bp TATATCACCAGGAACTATGTCTTTAGCTTTAATTCGTaGCACACTCTTTCTGTCCTGTCGATACACTTTGCC +
Preference number: 6 (lower is better)
Translates to: YITRNYVFSFNS*HTLSVLSIHFA
Trigger: GGCAAAGTGTATCGACAGGACAGAAAGAGTGTGCAACGAATTAAAGCTAAAGACATAGTTCCTGGTGATATA
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000031423.10
ENSMUST00000177974.8
ENSMUST00000179939.8
CDS CAA 72 bp GTAAGAATTGACTGGTCGACTCTTAGAGTTGTAGACTaGATGGATGTCAATCTAATATCAGCAGGAACTTTG +
Preference number: 6 (lower is better)
Translates to: VRIDWSTLRVVD*MDVNLISAGTL
Trigger: CAAAGTTCCTGCTGATATTAGATTGACATCCATCAAGTCTACAACTCTAAGAGTCGACCAGTCAATTCTTAC
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000031423.10
ENSMUST00000177974.8
ENSMUST00000179939.8