Pregenerated sensors for ATP1B1 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000026576Ensembl transcript IDs: ENSMUST00000027863.13
Found 20 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR-3UTR CCA 90 bp | AAAGGAAATGGACGAATAAGCAAACTACCCAGCCCATCACTAGCCACAGTGACAAGCTGCAGAACACACTaGAGGACACGGGGAGAGATG | + |
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Preference number: 2 (lower is better) Translates to: KGNGRISKLPSPSLATVTSCRTH*RTRGEM Trigger: CATCTCTCCCCGTGTCCTCCAGTGTGTTCTGCAGCT...TGTCACTGTGGCTAGTGATGGGCTGGGTAGTTTGCTTATTCGTCCATTTCCTTT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000027863.13 |
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| 3UTR-3UTR TCA 90 bp | AAAGGAAATGGACGAATAAGCAAACTACCCAGCCCATCACTAGCCACAGTGACAATGGGCCGTTACCTTTaGAATTTCAGAGCCAAGAAA | + |
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Preference number: 2 (lower is better) Translates to: KGNGRISKLPSPSLATVTMGRYL*NFRAKK Trigger: TTTCTTGGCTCTGAAATTTCAAAGGTAACGGCCCAT...TGTCACTGTGGCTAGTGATGGGCTGGGTAGTTTGCTTATTCGTCCATTTCCTTT 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000027863.13 |
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| 3UTR CCA 72 bp | GAAGAGACTATGGAGTGTGTTAAAAATGCTCATCGATaGGCCGTTACCTTTGAAATTTCAGAGCCAAGAAAA | + |
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Preference number: 3 (lower is better) Translates to: EETMECVKNAHR*AVTFEISEPRK Trigger: TTTTCTTGGCTCTGAAATTTCAAAGGTAACGGCCCATCGATGAGCATTTTTAACACACTCCATAGTCTCTTC 40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000027863.13 |
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| CDS-3UTR TCA 90 bp | GAAAATGGTCAAAACATTCATAAGGACGCAGCACCAGCGCATGATGCCTCCAGACTTGGATGGTCCCGATaGAGATGCCAGCCAGGCAGC | + |
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Preference number: 4 (lower is better) Translates to: ENGQNIHKDAAPAHDASRLGWSR*RCQPGS Trigger: GCTGCCTGGCTGGCATCTTCATCGGGACCATCCAAG...TCTGGAGGCATCATGCGCTGGTGCTGCGTCCTTATGAATGTTTTGACCATTTTC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000027863.13 |
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| CDS-3UTR GCA 90 bp | AGAAGGAAAGGAAATGGACGAATAAGCAAACTACCCAGCCCATCACTAGCCACAGTGAGGTTGGTGAACTaGACGGCCAGCAGGGGCTGC | + |
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Preference number: 4 (lower is better) Translates to: RRKGNGRISKLPSPSLATVRLVN*TASRGC Trigger: GCAGCCCCTGCTGGCCGTGCAGTTCACCAACCTCAC...TGTGGCTAGTGATGGGCTGGGTAGTTTGCTTATTCGTCCATTTCCTTTCCTTCT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000027863.13 |
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| CDS-3UTR TCA 90 bp | GAAAATGGTCAAAACATTCATAAGGACGCAGCACCAGCGCATGATGCCTCCAGACCAGCCAGTCAAGCTTaGACCTGCACACCTTCCTCT | + |
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Preference number: 4 (lower is better) Translates to: ENGQNIHKDAAPAHDASRPASQA*TCTPSS Trigger: AGAGGAAGGTGTGCAGGTTCAAGCTTGACTGGCTGG...TCTGGAGGCATCATGCGCTGGTGCTGCGTCCTTATGAATGTTTTGACCATTTTC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000027863.13 |
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| CDS-3UTR CCA 90 bp | AAAGGAAATGGACGAATAAGCAAACTACCCAGCCCATCACTAGCCACAGTGACAGGGGCCACTCGGTCCTaGTATGTGGGCTTCAGTTCA | + |
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Preference number: 4 (lower is better) Translates to: KGNGRISKLPSPSLATVTGATRS*YVGFSS Trigger: TGAACTGAAGCCCACATACCAGGACCGAGTGGCCCC...TGTCACTGTGGCTAGTGATGGGCTGGGTAGTTTGCTTATTCGTCCATTTCCTTT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000027863.13 |
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| CDS-3UTR CCA 90 bp | GAAGAGACTATGGAGTGTGTTAAAAATGCTCATCGATGGGCCGTTACCTTTGAAAATCTGTGTCAATCCTaGCGGGGCCACTCGGTCCTG | + |
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Preference number: 4 (lower is better) Translates to: EETMECVKNAHRWAVTFENLCQS*RGHSVL Trigger: CAGGACCGAGTGGCCCCGCCAGGATTGACACAGATT...TTCAAAGGTAACGGCCCATCGATGAGCATTTTTAACACACTCCATAGTCTCTTC 49% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000027863.13 |
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| CDS-3UTR CCA 90 bp | GAAAATGGTCAAAACATTCATAAGGACGCAGCACCAGCGCATGATGCCTCCAGAGTTCCTTGGGTTCACTaGGAACATTGCCACAGTCCT | + |
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Preference number: 4 (lower is better) Translates to: ENGQNIHKDAAPAHDASRVPWVH*EHCHSP Trigger: AGGACTGTGGCAATGTTCCCAGTGAACCCAAGGAAC...TCTGGAGGCATCATGCGCTGGTGCTGCGTCCTTATGAATGTTTTGACCATTTTC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000027863.13 |
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| CDS-3UTR GCA 90 bp | AAAGGAAATGGACGAATAAGCAAACTACCCAGCCCATCACTAGCCACAGTGACACATCTCTCTTGCCAGTaGACTGAACAGGCAGGACAT | + |
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Preference number: 4 (lower is better) Translates to: KGNGRISKLPSPSLATVTHLSCQ*TEQAGH Trigger: ATGTCCTGCCTGTTCAGTGCACTGGCAAGAGAGATG...TGTCACTGTGGCTAGTGATGGGCTGGGTAGTTTGCTTATTCGTCCATTTCCTTT 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000027863.13 |
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| CDS-3UTR TCA 90 bp | AAAGGAAATGGACGAATAAGCAAACTACCCAGCCCATCACTAGCCACAGTGACATCTCCGAGTTCCAGATaGATTTCTTCCAGCTGCCTT | + |
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Preference number: 4 (lower is better) Translates to: KGNGRISKLPSPSLATVTSPSSR*ISSSCL Trigger: AAGGCAGCTGGAAGAAATTCATCTGGAACTCGGAGA...TGTCACTGTGGCTAGTGATGGGCTGGGTAGTTTGCTTATTCGTCCATTTCCTTT 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000027863.13 |
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| CDS-3UTR CCA 90 bp | AAAGGAAATGGACGAATAAGCAAACTACCCAGCCCATCACTAGCCACAGTGACAGAGATCTCAGTCTTCTaGATCTGGGGAATCTGTGTC | + |
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Preference number: 4 (lower is better) Translates to: KGNGRISKLPSPSLATVTEISVF*IWGICV Trigger: GACACAGATTCCCCAGATCCAGAAGACTGAGATCTC...TGTCACTGTGGCTAGTGATGGGCTGGGTAGTTTGCTTATTCGTCCATTTCCTTT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000027863.13 |
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| CDS-3UTR CCA 90 bp | AGAAGGAAAGGAAATGGACGAATAAGCAAACTACCCAGCCCATCACTAGCCACAGTTAGCAGCATTACTTaGATGGTCCCGATGAAGATG | + |
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Preference number: 4 (lower is better) Translates to: RRKGNGRISKLPSPSLATVSSIT*MVPMKM Trigger: CATCTTCATCGGGACCATCCAAGTAATGCTGCTAAC...TGTGGCTAGTGATGGGCTGGGTAGTTTGCTTATTCGTCCATTTCCTTTCCTTCT 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000027863.13 |
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| CDS-3UTR CCA 90 bp | AAAGGAAATGGACGAATAAGCAAACTACCCAGCCCATCACTAGCCACAGTGACAAACAGGCAGGACATTTaGATTATACTTCATCATCAG | + |
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Preference number: 4 (lower is better) Translates to: KGNGRISKLPSPSLATVTNRQDI*IILHHQ Trigger: CTGATGATGAAGTATAATCCAAATGTCCTGCCTGTT...TGTCACTGTGGCTAGTGATGGGCTGGGTAGTTTGCTTATTCGTCCATTTCCTTT 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000027863.13 |
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| CDS-3UTR TCA 90 bp | GTTAAAAATGCTCATCGATGGGCCGTTACCTTTGAAATTTCAGAGCCAAGAAAATGGGCTTCAGTTCACTaGTGGTTAGCAGCATTACTT | + |
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Preference number: 4 (lower is better) Translates to: VKNAHRWAVTFEISEPRKWASVH*WLAALL Trigger: AAGTAATGCTGCTAACCATCAGTGAACTGAAGCCCA...TTTTCTTGGCTCTGAAATTTCAAAGGTAACGGCCCATCGATGAGCATTTTTAAC 41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000027863.13 |
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| CDS-3UTR CAA 90 bp | GAAAATGGTCAAAACATTCATAAGGACGCAGCACCAGCGCATGATGCCTCCAGAATGTCGCCCCGTTCCTaGGGTTCACTGGGAACATTG | + |
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Preference number: 5 (lower is better) Translates to: ENGQNIHKDAAPAHDASRMSPRS*GSLGTL Trigger: CAATGTTCCCAGTGAACCCAAGGAACGGGGCGACAT...TCTGGAGGCATCATGCGCTGGTGCTGCGTCCTTATGAATGTTTTGACCATTTTC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000027863.13 |
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| CDS-3UTR CAA 90 bp | GTTAAAAATGCTCATCGATGGGCCGTTACCTTTGAAATTTCAGAGCCAAGAAAACCCAGCCAGTCAAGCTaGAACCTGCACACCTTCCTC | + |
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Preference number: 5 (lower is better) Translates to: VKNAHRWAVTFEISEPRKPSQSS*NLHTFL Trigger: GAGGAAGGTGTGCAGGTTCAAGCTTGACTGGCTGGG...TTTTCTTGGCTCTGAAATTTCAAAGGTAACGGCCCATCGATGAGCATTTTTAAC 47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000027863.13 |
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| CDS-3UTR CAA 90 bp | GAAGAGACTATGGAGTGTGTTAAAAATGCTCATCGATGGGCCGTTACCTTTGAAGGTTCACTGGGAACATaGCCACAGTCCTCGAAAATC | + |
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Preference number: 5 (lower is better) Translates to: EETMECVKNAHRWAVTFEGSLGT*PQSSKI Trigger: GATTTTCGAGGACTGTGGCAATGTTCCCAGTGAACC...TTCAAAGGTAACGGCCCATCGATGAGCATTTTTAACACACTCCATAGTCTCTTC 46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000027863.13 |
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| CDS-3UTR CAA 90 bp | GAAGAGACTATGGAGTGTGTTAAAAATGCTCATCGATGGGCCGTTACCTTTGAAAACACTCGGTTGAGCTaGATAATGATGCAGGGCTTC | + |
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Preference number: 5 (lower is better) Translates to: EETMECVKNAHRWAVTFENTRLS*IMMQGF Trigger: GAAGCCCTGCATCATTATCAAGCTCAACCGAGTGTT...TTCAAAGGTAACGGCCCATCGATGAGCATTTTTAACACACTCCATAGTCTCTTC 44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000027863.13 |
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| CDS-3UTR CAA 90 bp | GTTAAAAATGCTCATCGATGGGCCGTTACCTTTGAAATTTCAGAGCCAAGAAAATCCAAGGATTCATTCTaGGGAGGCTTCGGTTTGAAG | + |
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Preference number: 5 (lower is better) Translates to: VKNAHRWAVTFEISEPRKSKDSF*GGFGLK Trigger: CTTCAAACCGAAGCCTCCCAAGAATGAATCCTTGGA...TTTTCTTGGCTCTGAAATTTCAAAGGTAACGGCCCATCGATGAGCATTTTTAAC 42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000027863.13 |
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