RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for ATP1A3 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000040907

Ensembl transcript IDs: ENSMUST00000080882.11, ENSMUST00000102858.10, ENSMUST00000196684.2

Found 208 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR TCA 90 bp GGTCTCTTTCTCCACCCAACCTGGAATGACAGAAGAGAGTCAAAGTaGGAGGAAGGCAGACACGAGAGCCATATGAGCAAGAGACAGGGA +
Preference number: 1 (lower is better)
Translates to: GLFLHPTWNDRRESK*EEGRHESHMSKRQG
Trigger: TCCCTGTCTCTTGCTCATATGGCTCTCGTGTCTGCCTTCCTCTCACTTTGACTCTCTTCTGTCATTCCAGGTTGGGTGGAGAAAGAGACC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000102858.10
3UTR-3UTR CCA 90 bp CTTGGGGTAGGGAAGACACGGGCGACGTGGTGGTGGCTGAGGTCAATAGTAGGTCGGAGAGGGCTGTCCTaGGCTTGGGGTAGGGAAGAC +
Preference number: 2 (lower is better)
Translates to: LGVGKTRATWWWLRSIVGRRGLS*AWGRED
Trigger: GTCTTCCCTACCCCAAGCCCAGGACAGCCCTCTCCG...ACCTACTATTGACCTCAGCCACCACCACGTCGCCCGTGTCTTCCCTACCCCAAG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000102858.10
3UTR-3UTR CCA 90 bp CTTGGGGTAGGGAAGACACGGGCGACGTGGTGGTGGCTGAGGTCAATAGTAGGTGAGGTAATCGAGGTGTaGGAGAGGAGGCTGGGCCAC +
Preference number: 2 (lower is better)
Translates to: LGVGKTRATWWWLRSIVGEVIEV*ERRLGH
Trigger: GTGGCCCAGCCTCCTCTCCCACACCTCGATTACCTC...ACCTACTATTGACCTCAGCCACCACCACGTCGCCCGTGTCTTCCCTACCCCAAG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000102858.10
3UTR-3UTR TCA 90 bp GACACGGGCGACGTGGTGGTGGCTGAGGTCAATAGTAGGTCTCTTTCTCCACCCAGAAACTCAGGGACATaGGCTCAAGGGCAGCCTGAG +
Preference number: 2 (lower is better)
Translates to: DTGDVVVAEVNSRSLSPPRNSGT*AQGQPE
Trigger: CTCAGGCTGCCCTTGAGCTCATGTCCCTGAGTTTCT...GGGTGGAGAAAGAGACCTACTATTGACCTCAGCCACCACCACGTCGCCCGTGTC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000102858.10
3UTR-3UTR CCA 90 bp CTTGGGGTAGGGAAGACACGGGCGACGTGGTGGTGGCTGAGGTCAATAGTAGGTAAACACAAGGTGTGGTaGCAGGCCTGTCATCCCAGC +
Preference number: 2 (lower is better)
Translates to: LGVGKTRATWWWLRSIVGKHKVW*QACHPS
Trigger: GCTGGGATGACAGGCCTGCCACCACACCTTGTGTTT...ACCTACTATTGACCTCAGCCACCACCACGTCGCCCGTGTCTTCCCTACCCCAAG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000102858.10
3UTR-3UTR CCA 90 bp GACACGGGCGACGTGGTGGTGGCTGAGGTCAATAGTAGGTCTCTTTCTCCACCCCACAAACACAAGGTGTaGTGGCAGGCCTGTCATCCC +
Preference number: 2 (lower is better)
Translates to: DTGDVVVAEVNSRSLSPPHKHKV*WQACHP
Trigger: GGGATGACAGGCCTGCCACCACACCTTGTGTTTGTG...GGGTGGAGAAAGAGACCTACTATTGACCTCAGCCACCACCACGTCGCCCGTGTC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000102858.10
3UTR-3UTR CCA 90 bp ATATTTGATAATTGTTCAGAATTAGAACCGGAGATGGCATACGCCAGGAGACGGCGGAGAGGGCTGTCCTaGGCTTGGGGTAGGGAAGAC +
Preference number: 2 (lower is better)
Translates to: IFDNCSELEPEMAYARRRRRGLS*AWGRED
Trigger: GTCTTCCCTACCCCAAGCCCAGGACAGCCCTCTCCG...CCGTCTCCTGGCGTATGCCATCTCCGGTTCTAATTCTGAACAATTATCAAATAT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000080882.11
ENSMUST00000102858.10
ENSMUST00000196684.2
3UTR-3UTR CCA 90 bp ACTGATATATTTGATAATTGTTCAGAATTAGAACCGGAGATGGCATACGCCAGGGGGCTGTCCTGGGCTTaGGGTAGGGAAGACACGGGC +
Preference number: 2 (lower is better)
Translates to: TDIFDNCSELEPEMAYARGLSWA*GREDTG
Trigger: GCCCGTGTCTTCCCTACCCCAAGCCCAGGACAGCCC...CCTGGCGTATGCCATCTCCGGTTCTAATTCTGAACAATTATCAAATATATCAGT
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000080882.11
ENSMUST00000102858.10
ENSMUST00000196684.2
3UTR-3UTR TCA 90 bp ATATTTGATAATTGTTCAGAATTAGAACCGGAGATGGCATACGCCAGGAGACGGAGCCAGAGGAAGAAGTaGGGGAACGTGGGAGGTAAT +
Preference number: 2 (lower is better)
Translates to: IFDNCSELEPEMAYARRRSQRKK*GNVGGN
Trigger: ATTACCTCCCACGTTCCCTCACTTCTTCCTCTGGCT...CCGTCTCCTGGCGTATGCCATCTCCGGTTCTAATTCTGAACAATTATCAAATAT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000080882.11
ENSMUST00000102858.10
ENSMUST00000196684.2
3UTR CCA 72 bp GGAGAGAAGCCAGCCAGAGGAAGAAGTGAGGGAACGTaGGAGGTAATCGAGGTGTGGGAGAGGAGGCTGGGC +
Preference number: 3 (lower is better)
Translates to: GEKPARGRSEGT*EVIEVWERRLG
Trigger: GCCCAGCCTCCTCTCCCACACCTCGATTACCTCCCACGTTCCCTCACTTCTTCCTCTGGCTGGCTTCTCTCC
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000080882.11
ENSMUST00000102858.10
ENSMUST00000196684.2
3UTR CCA 72 bp CCTGGGCTTGGGGTAGGGAAGACACGGGCGACGTGGTaGTGGCTGAGGTCAATAGTAGGTCTCTTTCTCCAC +
Preference number: 3 (lower is better)
Translates to: PGLGVGKTRATW*WLRSIVGLFLH
Trigger: GTGGAGAAAGAGACCTACTATTGACCTCAGCCACCACCACGTCGCCCGTGTCTTCCCTACCCCAAGCCCAGG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000102858.10
3UTR TCA 72 bp CTCCACCCAACCTGGAATGACAGAAGAGAGTCAAAGTaGGAGGAAGGCAGACACGAGAGCCATATGAGCAAG +
Preference number: 3 (lower is better)
Translates to: LHPTWNDRRESK*EEGRHESHMSK
Trigger: CTTGCTCATATGGCTCTCGTGTCTGCCTTCCTCTCACTTTGACTCTCTTCTGTCATTCCAGGTTGGGTGGAG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000102858.10
CDS-3UTR CCA 90 bp GGGGACCGGAGAGGGCTGTCCTGGGCTTGGGGTAGGGAAGACACGGGCGACGTGCAGAGCCCGGCGATGTaGGACAGGGCCACCCAGGTG +
Preference number: 4 (lower is better)
Translates to: GDRRGLSWAWGREDTGDVQSPAM*DRATQV
Trigger: CACCTGGGTGGCCCTGTCCCACATCGCCGGGCTCTG...CACGTCGCCCGTGTCTTCCCTACCCCAAGCCCAGGACAGCCCTCTCCGGTCCCC
70% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000080882.11
ENSMUST00000102858.10
ENSMUST00000196684.2
CDS-3UTR TCA 90 bp GGGGACCGGAGAGGGCTGTCCTGGGCTTGGGGTAGGGAAGACACGGGCGACGTGAGCCATGGGCCGAGATaGTGCGCAGGTCAGCTGGCA +
Preference number: 4 (lower is better)
Translates to: GDRRGLSWAWGREDTGDVSHGPR*CAGQLA
Trigger: TGCCAGCTGACCTGCGCATCATCTCGGCCCATGGCT...CACGTCGCCCGTGTCTTCCCTACCCCAAGCCCAGGACAGCCCTCTCCGGTCCCC
68% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000080882.11
ENSMUST00000102858.10
ENSMUST00000196684.2
CDS-3UTR TCA 90 bp GGGCTGTCCTGGGCTTGGGGTAGGGAAGACACGGGCGACGTGGTGGTGGCTGAGTGTCCTGCCCGCCCTTaGAGACGGCCCGGTTGCAGA +
Preference number: 4 (lower is better)
Translates to: GLSWAWGREDTGDVVVAECPARP*RRPGCR
Trigger: TCTGCAACCGGGCCGTCTTCAAGGGCGGGCAGGACA...CTCAGCCACCACCACGTCGCCCGTGTCTTCCCTACCCCAAGCCCAGGACAGCCC
68% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000080882.11
ENSMUST00000102858.10
ENSMUST00000196684.2
CDS-3UTR GCA 90 bp GGGCTGTCCTGGGCTTGGGGTAGGGAAGACACGGGCGACGTGGTGGTGGCTGAGGGGGGTTGTCGTGTGTaGAGTCCGGGGAGCGGGTCT +
Preference number: 4 (lower is better)
Translates to: GLSWAWGREDTGDVVVAEGGCRV*SPGSGS
Trigger: AGACCCGCTCCCCGGACTGCACACACGACAACCCCC...CTCAGCCACCACCACGTCGCCCGTGTCTTCCCTACCCCAAGCCCAGGACAGCCC
68% GC, longest homopolymer 6 nt, total homopolymer stretches 14 nt.
Matches the following 3 transcripts:
ENSMUST00000080882.11
ENSMUST00000102858.10
ENSMUST00000196684.2
CDS-3UTR CCA 90 bp GGGGACCGGAGAGGGCTGTCCTGGGCTTGGGGTAGGGAAGACACGGGCGACGTGGATGCGCAGGTCAGCTaGCACCCGGTCACCACCCTT +
Preference number: 4 (lower is better)
Translates to: GDRRGLSWAWGREDTGDVDAQVS*HPVTTL
Trigger: AAGGGTGGTGACCGGGTGCCAGCTGACCTGCGCATC...CACGTCGCCCGTGTCTTCCCTACCCCAAGCCCAGGACAGCCCTCTCCGGTCCCC
68% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000080882.11
ENSMUST00000102858.10
ENSMUST00000196684.2
CDS-3UTR CCA 90 bp GGGCTGTCCTGGGCTTGGGGTAGGGAAGACACGGGCGACGTGGTGGTGGCTGAGCGGTGCGGTCACCTGTaGCTACCACCACACCCCGAG +
Preference number: 4 (lower is better)
Translates to: GLSWAWGREDTGDVVVAERCGHL*LPPHPE
Trigger: CTCGGGGTGTGGTGGTAGCCACAGGTGACCGCACCG...CTCAGCCACCACCACGTCGCCCGTGTCTTCCCTACCCCAAGCCCAGGACAGCCC
68% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000080882.11
ENSMUST00000102858.10
ENSMUST00000196684.2
CDS-3UTR TCA 90 bp GGGCTGTCCTGGGCTTGGGGTAGGGAAGACACGGGCGACGTGGTGGTGGCTGAGAGCCATGGGCCGAGATaGTGCGCAGGTCAGCTGGCA +
Preference number: 4 (lower is better)
Translates to: GLSWAWGREDTGDVVVAESHGPR*CAGQLA
Trigger: TGCCAGCTGACCTGCGCATCATCTCGGCCCATGGCT...CTCAGCCACCACCACGTCGCCCGTGTCTTCCCTACCCCAAGCCCAGGACAGCCC
67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000080882.11
ENSMUST00000102858.10
ENSMUST00000196684.2
CDS-3UTR GCA 90 bp GGGGACCGGAGAGGGCTGTCCTGGGCTTGGGGTAGGGAAGACACGGGCGACGTGACTGGGATGTTGTCCTaGCCGCCCTTGAAGACGGCC +
Preference number: 4 (lower is better)
Translates to: GDRRGLSWAWGREDTGDVTGMLS*PPLKTA
Trigger: GGCCGTCTTCAAGGGCGGGCAGGACAACATCCCAGT...CACGTCGCCCGTGTCTTCCCTACCCCAAGCCCAGGACAGCCCTCTCCGGTCCCC
67% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000080882.11
ENSMUST00000102858.10
ENSMUST00000196684.2
CDS-3UTR CCA 90 bp GGGGACCGGAGAGGGCTGTCCTGGGCTTGGGGTAGGGAAGACACGGGCGACGTGTGCCCTGCAGGAGGATaGTGGCACAGCGGTCCAGAA +
Preference number: 4 (lower is better)
Translates to: GDRRGLSWAWGREDTGDVCPAGG*WHSGPE
Trigger: TTCTGGACCGCTGTGCCACCATCCTCCTGCAGGGCA...CACGTCGCCCGTGTCTTCCCTACCCCAAGCCCAGGACAGCCCTCTCCGGTCCCC
67% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000080882.11
ENSMUST00000102858.10
ENSMUST00000196684.2
CDS-3UTR TCA 90 bp TGTCCTGGGCTTGGGGTAGGGAAGACACGGGCGACGTGGTGGTGGCTGAGGTCATGGCAATGCGGCCCATaGCGGTGCGGTCACCTGTGG +
Preference number: 4 (lower is better)
Translates to: CPGLGVGKTRATWWWLRSWQCGP*RCGHLW
Trigger: CCACAGGTGACCGCACCGTCATGGGCCGCATTGCCA...TGACCTCAGCCACCACCACGTCGCCCGTGTCTTCCCTACCCCAAGCCCAGGACA
66% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000102858.10
CDS-3UTR TCA 90 bp GGGGACCGGAGAGGGCTGTCCTGGGCTTGGGGTAGGGAAGACACGGGCGACGTGGGCCACCCAGGTGTGTaGGCTCTTGTCGAAAGAGGT +
Preference number: 4 (lower is better)
Translates to: GDRRGLSWAWGREDTGDVGHPGV*ALVERG
Trigger: ACCTCTTTCGACAAGAGCTCACACACCTGGGTGGCC...CACGTCGCCCGTGTCTTCCCTACCCCAAGCCCAGGACAGCCCTCTCCGGTCCCC
66% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000080882.11
ENSMUST00000102858.10
ENSMUST00000196684.2
CDS-3UTR TCA 90 bp TGTCCTGGGCTTGGGGTAGGGAAGACACGGGCGACGTGGTGGTGGCTGAGGTCATGTCCTGCCCGCCCTTaGAGACGGCCCGGTTGCAGA +
Preference number: 4 (lower is better)
Translates to: CPGLGVGKTRATWWWLRSCPARP*RRPGCR
Trigger: TCTGCAACCGGGCCGTCTTCAAGGGCGGGCAGGACA...TGACCTCAGCCACCACCACGTCGCCCGTGTCTTCCCTACCCCAAGCCCAGGACA
66% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000102858.10
CDS-3UTR GCA 90 bp GGGGACCGGAGAGGGCTGTCCTGGGCTTGGGGTAGGGAAGACACGGGCGACGTGGGTGATGATCACGACTaGGGCCAGCACTATGCCCAG +
Preference number: 4 (lower is better)
Translates to: GDRRGLSWAWGREDTGDVGDDHD*GQHYAQ
Trigger: CTGGGCATAGTGCTGGCCGCAGTCGTGATCATCACC...CACGTCGCCCGTGTCTTCCCTACCCCAAGCCCAGGACAGCCCTCTCCGGTCCCC
66% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000080882.11
ENSMUST00000102858.10
ENSMUST00000196684.2
CDS-3UTR GCA 90 bp GGGCTGTCCTGGGCTTGGGGTAGGGAAGACACGGGCGACGTGGTGGTGGCTGAGACTGGGATGTTGTCCTaGCCGCCCTTGAAGACGGCC +
Preference number: 4 (lower is better)
Translates to: GLSWAWGREDTGDVVVAETGMLS*PPLKTA
Trigger: GGCCGTCTTCAAGGGCGGGCAGGACAACATCCCAGT...CTCAGCCACCACCACGTCGCCCGTGTCTTCCCTACCCCAAGCCCAGGACAGCCC
66% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000080882.11
ENSMUST00000102858.10
ENSMUST00000196684.2
CDS-3UTR GCA 90 bp GGGGACCGGAGAGGGCTGTCCTGGGCTTGGGGTAGGGAAGACACGGGCGACGTGGTAGGCCAGGGAGATTaGAGGGACCATGTCGGTACC +
Preference number: 4 (lower is better)
Translates to: GDRRGLSWAWGREDTGDVVGQGD*RDHVGT
Trigger: GGTACCGACATGGTCCCTGCAATCTCCCTGGCCTAC...CACGTCGCCCGTGTCTTCCCTACCCCAAGCCCAGGACAGCCCTCTCCGGTCCCC
66% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000080882.11
ENSMUST00000102858.10
ENSMUST00000196684.2
CDS-3UTR GCA 90 bp GGGGACCGGAGAGGGCTGTCCTGGGCTTGGGGTAGGGAAGACACGGGCGACGTGGAAGGGCCACATCCATaGCTGGGCAGTAGGACAGGA +
Preference number: 4 (lower is better)
Translates to: GDRRGLSWAWGREDTGDVEGPHP*LGSRTG
Trigger: TCCTGTCCTACTGCCCAGGCATGGATGTGGCCCTTC...CACGTCGCCCGTGTCTTCCCTACCCCAAGCCCAGGACAGCCCTCTCCGGTCCCC
66% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000080882.11
ENSMUST00000102858.10
ENSMUST00000196684.2
CDS-3UTR CCA 90 bp GGGCTGTCCTGGGCTTGGGGTAGGGAAGACACGGGCGACGTGGTGGTGGCTGAGTGCCCTGCAGGAGGATaGTGGCACAGCGGTCCAGAA +
Preference number: 4 (lower is better)
Translates to: GLSWAWGREDTGDVVVAECPAGG*WHSGPE
Trigger: TTCTGGACCGCTGTGCCACCATCCTCCTGCAGGGCA...CTCAGCCACCACCACGTCGCCCGTGTCTTCCCTACCCCAAGCCCAGGACAGCCC
66% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000080882.11
ENSMUST00000102858.10
ENSMUST00000196684.2
CDS-3UTR CCA 90 bp GGGGACCGGAGAGGGCTGTCCTGGGCTTGGGGTAGGGAAGACACGGGCGACGTGTCCCTGGGGTTCACCTaGCTGACAGGGATGTTGAGC +
Preference number: 4 (lower is better)
Translates to: GDRRGLSWAWGREDTGDVSLGFT*LTGMLS
Trigger: GCTCAACATCCCTGTCAGCCAGGTGAACCCCAGGGA...CACGTCGCCCGTGTCTTCCCTACCCCAAGCCCAGGACAGCCCTCTCCGGTCCCC
66% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000080882.11
ENSMUST00000102858.10
ENSMUST00000196684.2
CDS-3UTR TCA 90 bp GGGGACCGGAGAGGGCTGTCCTGGGCTTGGGGTAGGGAAGACACGGGCGACGTGGTCGAAAGAGGTCCCTaGCTGATCCTCTGTGGTGTC +
Preference number: 4 (lower is better)
Translates to: GDRRGLSWAWGREDTGDVVERGP*LILCGV
Trigger: GACACCACAGAGGATCAGTCAGGGACCTCTTTCGAC...CACGTCGCCCGTGTCTTCCCTACCCCAAGCCCAGGACAGCCCTCTCCGGTCCCC
64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000080882.11
ENSMUST00000102858.10
ENSMUST00000196684.2
CDS-3UTR TCA 90 bp GGGCTGTCCTGGGCTTGGGGTAGGGAAGACACGGGCGACGTGGTGGTGGCTGAGTTGGCAGTGATGGGGTaGTCGCCGGTGACCATGATG +
Preference number: 4 (lower is better)
Translates to: GLSWAWGREDTGDVVVAELAVMG*SPVTMM
Trigger: CATCATGGTCACCGGCGATCACCCCATCACTGCCAA...CTCAGCCACCACCACGTCGCCCGTGTCTTCCCTACCCCAAGCCCAGGACAGCCC
64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000080882.11
ENSMUST00000102858.10
ENSMUST00000196684.2
CDS-3UTR TCA 90 bp GGGGACCGGAGAGGGCTGTCCTGGGCTTGGGGTAGGGAAGACACGGGCGACGTGATTGCTCCCTGTCTCTaGCAGCCCTCCACGATGATG +
Preference number: 4 (lower is better)
Translates to: GDRRGLSWAWGREDTGDVIAPCL*QPSTMM
Trigger: CATCATCGTGGAGGGCTGTCAGAGACAGGGAGCAAT...CACGTCGCCCGTGTCTTCCCTACCCCAAGCCCAGGACAGCCCTCTCCGGTCCCC
64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000080882.11
ENSMUST00000102858.10
ENSMUST00000196684.2
CDS-3UTR GCA 90 bp GGGCTGTCCTGGGCTTGGGGTAGGGAAGACACGGGCGACGTGGTGGTGGCTGAGGGTGATGATCACGACTaGGGCCAGCACTATGCCCAG +
Preference number: 4 (lower is better)
Translates to: GLSWAWGREDTGDVVVAEGDDHD*GQHYAQ
Trigger: CTGGGCATAGTGCTGGCCGCAGTCGTGATCATCACC...CTCAGCCACCACCACGTCGCCCGTGTCTTCCCTACCCCAAGCCCAGGACAGCCC
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000080882.11
ENSMUST00000102858.10
ENSMUST00000196684.2
CDS-3UTR GCA 90 bp GGGCTGTCCTGGGCTTGGGGTAGGGAAGACACGGGCGACGTGGTGGTGGCTGAGGAAGGGCCACATCCATaGCTGGGCAGTAGGACAGGA +
Preference number: 4 (lower is better)
Translates to: GLSWAWGREDTGDVVVAEEGPHP*LGSRTG
Trigger: TCCTGTCCTACTGCCCAGGCATGGATGTGGCCCTTC...CTCAGCCACCACCACGTCGCCCGTGTCTTCCCTACCCCAAGCCCAGGACAGCCC
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000080882.11
ENSMUST00000102858.10
ENSMUST00000196684.2
CDS-3UTR CCA 90 bp GGGGACCGGAGAGGGCTGTCCTGGGCTTGGGGTAGGGAAGACACGGGCGACGTGCAGTTTGTCTGTGCGTaGGTTCCTGGGCTGCCTCTT +
Preference number: 4 (lower is better)
Translates to: GDRRGLSWAWGREDTGDVQFVCA*VPGLPL
Trigger: AAGAGGCAGCCCAGGAACCCACGCACAGACAAACTG...CACGTCGCCCGTGTCTTCCCTACCCCAAGCCCAGGACAGCCCTCTCCGGTCCCC
64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000080882.11
ENSMUST00000102858.10
ENSMUST00000196684.2
CDS-3UTR TCA 90 bp GGGCTGTCCTGGGCTTGGGGTAGGGAAGACACGGGCGACGTGGTGGTGGCTGAGAAAGAGGTCCCTGACTaGTCCTCTGTGGTGTCTGCC +
Preference number: 4 (lower is better)
Translates to: GLSWAWGREDTGDVVVAEKEVPD*SSVVSA
Trigger: GGCAGACACCACAGAGGATCAGTCAGGGACCTCTTT...CTCAGCCACCACCACGTCGCCCGTGTCTTCCCTACCCCAAGCCCAGGACAGCCC
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000080882.11
ENSMUST00000102858.10
ENSMUST00000196684.2
CDS-3UTR TCA 90 bp GGGGACCGGAGAGGGCTGTCCTGGGCTTGGGGTAGGGAAGACACGGGCGACGTGCGTTACCCTCAGAGATaGTACCCACACCCTTGGCAA +
Preference number: 4 (lower is better)
Translates to: GDRRGLSWAWGREDTGDVRYPQR*YPHPWQ
Trigger: TTGCCAAGGGTGTGGGTATCATCTCTGAGGGTAACG...CACGTCGCCCGTGTCTTCCCTACCCCAAGCCCAGGACAGCCCTCTCCGGTCCCC
63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000080882.11
ENSMUST00000102858.10
ENSMUST00000196684.2
CDS-3UTR TCA 90 bp GGGCTGTCCTGGGCTTGGGGTAGGGAAGACACGGGCGACGTGGTGGTGGCTGAGTTGAGGTCGGTGCCGTaGATCACACAGGCTTTGGCA +
Preference number: 4 (lower is better)
Translates to: GLSWAWGREDTGDVVVAELRSVP*ITQALA
Trigger: TGCCAAAGCCTGTGTGATTCACGGCACCGACCTCAA...CTCAGCCACCACCACGTCGCCCGTGTCTTCCCTACCCCAAGCCCAGGACAGCCC
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000080882.11
ENSMUST00000102858.10
ENSMUST00000196684.2
CDS-3UTR TCA 90 bp GGGCTGTCCTGGGCTTGGGGTAGGGAAGACACGGGCGACGTGGTGGTGGCTGAGATTGCTCCCTGTCTCTaGCAGCCCTCCACGATGATG +
Preference number: 4 (lower is better)
Translates to: GLSWAWGREDTGDVVVAEIAPCL*QPSTMM
Trigger: CATCATCGTGGAGGGCTGTCAGAGACAGGGAGCAAT...CTCAGCCACCACCACGTCGCCCGTGTCTTCCCTACCCCAAGCCCAGGACAGCCC
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000080882.11
ENSMUST00000102858.10
ENSMUST00000196684.2
CDS-3UTR CCA 90 bp GGGGACCGGAGAGGGCTGTCCTGGGCTTGGGGTAGGGAAGACACGGGCGACGTGCGGGCTAGGATCTCCTaGGCTTTACTGTGTGTCAGA +
Preference number: 4 (lower is better)
Translates to: GDRRGLSWAWGREDTGDVRARIS*ALLCVR
Trigger: TCTGACACACAGTAAAGCCCAGGAGATCCTAGCCCG...CACGTCGCCCGTGTCTTCCCTACCCCAAGCCCAGGACAGCCCTCTCCGGTCCCC
63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000080882.11
ENSMUST00000102858.10
ENSMUST00000196684.2
CDS-3UTR CCA 90 bp GGGCTGTCCTGGGCTTGGGGTAGGGAAGACACGGGCGACGTGGTGGTGGCTGAGCAATCTCAATGGCGATaGGCGTCTTGCCCACCTCCA +
Preference number: 4 (lower is better)
Translates to: GLSWAWGREDTGDVVVAEQSQWR*ASCPPP
Trigger: TGGAGGTGGGCAAGACGCCCATCGCCATTGAGATTG...CTCAGCCACCACCACGTCGCCCGTGTCTTCCCTACCCCAAGCCCAGGACAGCCC
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000080882.11
ENSMUST00000102858.10
ENSMUST00000196684.2
CDS-3UTR CCA 90 bp GGGGACCGGAGAGGGCTGTCCTGGGCTTGGGGTAGGGAAGACACGGGCGACGTGCAAAGGCAAAGCCCTTaGGGAACTGTTCCTCAGGCA +
Preference number: 4 (lower is better)
Translates to: GDRRGLSWAWGREDTGDVQRQSP*GTVPQA
Trigger: TGCCTGAGGAACAGTTCCCCAAGGGCTTTGCCTTTG...CACGTCGCCCGTGTCTTCCCTACCCCAAGCCCAGGACAGCCCTCTCCGGTCCCC
63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000080882.11
ENSMUST00000102858.10
ENSMUST00000196684.2
CDS-3UTR CCA 90 bp GGGCTGTCCTGGGCTTGGGGTAGGGAAGACACGGGCGACGTGGTGGTGGCTGAGTTTTGTCCTGCGAGGTaGCGACACGGTAGCTGTCAG +
Preference number: 4 (lower is better)
Translates to: GLSWAWGREDTGDVVVAEFCPAR*RHGSCQ
Trigger: CTGACAGCTACCGTGTCGCCACCTCGCAGGACAAAA...CTCAGCCACCACCACGTCGCCCGTGTCTTCCCTACCCCAAGCCCAGGACAGCCC
63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000196684.2
CDS-3UTR TCA 90 bp GGGGACCGGAGAGGGCTGTCCTGGGCTTGGGGTAGGGAAGACACGGGCGACGTGGGTTCCTGCGCAGGATaGGTTTGCGAATCTCATCAT +
Preference number: 4 (lower is better)
Translates to: GDRRGLSWAWGREDTGDVGSCAG*VCESHH
Trigger: ATGATGAGATTCGCAAACTCATCCTGCGCAGGAACC...CACGTCGCCCGTGTCTTCCCTACCCCAAGCCCAGGACAGCCCTCTCCGGTCCCC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000080882.11
ENSMUST00000102858.10
ENSMUST00000196684.2
CDS-3UTR GCA 90 bp GGGCTGTCCTGGGCTTGGGGTAGGGAAGACACGGGCGACGTGGTGGTGGCTGAGTCCTCCGCATTCACCTaGATCTTTTCACCTTCCCGG +
Preference number: 4 (lower is better)
Translates to: GLSWAWGREDTGDVVVAESSAFT*IFSPSR
Trigger: CCGGGAAGGTGAAAAGATGCAGGTGAATGCGGAGGA...CTCAGCCACCACCACGTCGCCCGTGTCTTCCCTACCCCAAGCCCAGGACAGCCC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000080882.11
ENSMUST00000102858.10
ENSMUST00000196684.2
CDS-3UTR GCA 90 bp GGGCTGTCCTGGGCTTGGGGTAGGGAAGACACGGGCGACGTGGTGGTGGCTGAGATCCTCTGTGGTGTCTaGCTCGTGGATCTGGTTGTC +
Preference number: 4 (lower is better)
Translates to: GLSWAWGREDTGDVVVAEILCGV*LVDLVV
Trigger: GACAACCAGATCCACGAGGCAGACACCACAGAGGAT...CTCAGCCACCACCACGTCGCCCGTGTCTTCCCTACCCCAAGCCCAGGACAGCCC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000080882.11
ENSMUST00000102858.10
ENSMUST00000196684.2
CDS-3UTR CCA 90 bp GGGGACCGGAGAGGGCTGTCCTGGGCTTGGGGTAGGGAAGACACGGGCGACGTGATCACAAGGGCTTGCTaGGGGACCATGTTCTTGAAG +
Preference number: 4 (lower is better)
Translates to: GDRRGLSWAWGREDTGDVITRAC*GTMFLK
Trigger: CTTCAAGAACATGGTCCCCCAGCAAGCCCTTGTGAT...CACGTCGCCCGTGTCTTCCCTACCCCAAGCCCAGGACAGCCCTCTCCGGTCCCC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000080882.11
ENSMUST00000102858.10
ENSMUST00000196684.2
CDS-3UTR CCA 90 bp GACACGGGCGACGTGGTGGTGGCTGAGGTCAATAGTAGGTCTCTTTCTCCACCCCGGTGCGGTCACCTGTaGCTACCACCACACCCCGAG +
Preference number: 4 (lower is better)
Translates to: DTGDVVVAEVNSRSLSPPRCGHL*LPPHPE
Trigger: CTCGGGGTGTGGTGGTAGCCACAGGTGACCGCACCG...GGGTGGAGAAAGAGACCTACTATTGACCTCAGCCACCACCACGTCGCCCGTGTC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000102858.10
CDS-3UTR CCA 90 bp GGGCTGTCCTGGGCTTGGGGTAGGGAAGACACGGGCGACGTGGTGGTGGCTGAGGAATCACACAGGCTTTaGCATCCCTGGGGTTCACCT +
Preference number: 4 (lower is better)
Translates to: GLSWAWGREDTGDVVVAEESHRL*HPWGSP
Trigger: AGGTGAACCCCAGGGATGCCAAAGCCTGTGTGATTC...CTCAGCCACCACCACGTCGCCCGTGTCTTCCCTACCCCAAGCCCAGGACAGCCC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000080882.11
ENSMUST00000102858.10
ENSMUST00000196684.2
CDS-3UTR TCA 90 bp GGGGACCGGAGAGGGCTGTCCTGGGCTTGGGGTAGGGAAGACACGGGCGACGTGGCAGACCTCTTCTACTaGCATCTTGTGCTCTGTCAT +
Preference number: 4 (lower is better)
Translates to: GDRRGLSWAWGREDTGDVADLFY*HLVLCH
Trigger: ATGACAGAGCACAAGATGTCAGTAGAAGAGGTCTGC...CACGTCGCCCGTGTCTTCCCTACCCCAAGCCCAGGACAGCCCTCTCCGGTCCCC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000080882.11
ENSMUST00000102858.10
ENSMUST00000196684.2
CDS-3UTR TCA 90 bp GGGGACCGGAGAGGGCTGTCCTGGGCTTGGGGTAGGGAAGACACGGGCGACGTGCTTCCTCCACACCAGTaGCAATGGAAGCAAAGTTGT +
Preference number: 4 (lower is better)
Translates to: GDRRGLSWAWGREDTGDVLPPHQ*QWKQSC
Trigger: ACAACTTTGCTTCCATTGTCACTGGTGTGGAGGAAG...CACGTCGCCCGTGTCTTCCCTACCCCAAGCCCAGGACAGCCCTCTCCGGTCCCC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000080882.11
ENSMUST00000102858.10
ENSMUST00000196684.2
CDS-3UTR TCA 90 bp GGGGACCGGAGAGGGCTGTCCTGGGCTTGGGGTAGGGAAGACACGGGCGACGTGTGTCTTCTAGGTCATTaGCAGTGCGATCATCCCAGT +
Preference number: 4 (lower is better)
Translates to: GDRRGLSWAWGREDTGDVCLLGH*QCDHPS
Trigger: ACTGGGATGATCGCACTGTCAATGACCTAGAAGACA...CACGTCGCCCGTGTCTTCCCTACCCCAAGCCCAGGACAGCCCTCTCCGGTCCCC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000080882.11
ENSMUST00000102858.10
ENSMUST00000196684.2
CDS-3UTR GCA 90 bp GGGGACCGGAGAGGGCTGTCCTGGGCTTGGGGTAGGGAAGACACGGGCGACGTGAGAATCTCGTCAATCTaGTCCGAGGTGAAGTCCTTG +
Preference number: 4 (lower is better)
Translates to: GDRRGLSWAWGREDTGDVRISSI*SEVKSL
Trigger: CAAGGACTTCACCTCGGAGCAGATTGACGAGATTCT...CACGTCGCCCGTGTCTTCCCTACCCCAAGCCCAGGACAGCCCTCTCCGGTCCCC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000080882.11
ENSMUST00000102858.10
ENSMUST00000196684.2
CDS-3UTR GCA 90 bp GGGGACCGGAGAGGGCTGTCCTGGGCTTGGGGTAGGGAAGACACGGGCGACGTGATCTCGGTGTGGTTCTaGAGAATCTCGTCAATCTGC +
Preference number: 4 (lower is better)
Translates to: GDRRGLSWAWGREDTGDVISVWF*RISSIC
Trigger: GCAGATTGACGAGATTCTGCAGAACCACACCGAGAT...CACGTCGCCCGTGTCTTCCCTACCCCAAGCCCAGGACAGCCCTCTCCGGTCCCC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000080882.11
ENSMUST00000102858.10
ENSMUST00000196684.2
CDS-3UTR CCA 90 bp GGGCTGTCCTGGGCTTGGGGTAGGGAAGACACGGGCGACGTGGTGGTGGCTGAGTGGCCTTGCTCTTCTTaGGCGAGCTCTTGTCATCTT +
Preference number: 4 (lower is better)
Translates to: GLSWAWGREDTGDVVVAEWPCSS*ASSCHL
Trigger: AAGATGACAAGAGCTCGCCCAAGAAGAGCAAGGCCA...CTCAGCCACCACCACGTCGCCCGTGTCTTCCCTACCCCAAGCCCAGGACAGCCC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000080882.11
ENSMUST00000102858.10
ENSMUST00000196684.2
CDS-3UTR CCA 90 bp GACACGGGCGACGTGGTGGTGGCTGAGGTCAATAGTAGGTCTCTTTCTCCACCCGGTCCCGGCGCTCTTTaGCCTTGCTCTTCTTGGGCG +
Preference number: 4 (lower is better)
Translates to: DTGDVVVAEVNSRSLSPPGPGAL*PCSSWA
Trigger: CGCCCAAGAAGAGCAAGGCCAAAGAGCGCCGGGACC...GGGTGGAGAAAGAGACCTACTATTGACCTCAGCCACCACCACGTCGCCCGTGTC
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000102858.10
CDS-3UTR CCA 90 bp GGGCTGTCCTGGGCTTGGGGTAGGGAAGACACGGGCGACGTGGTGGTGGCTGAGGGTGCCAAGAGGCAGTaGGATGTTAGCCATGATGAA +
Preference number: 4 (lower is better)
Translates to: GLSWAWGREDTGDVVVAEGAKRQ*DVSHDE
Trigger: TTCATCATGGCTAACATCCCACTGCCTCTTGGCACC...CTCAGCCACCACCACGTCGCCCGTGTCTTCCCTACCCCAAGCCCAGGACAGCCC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000080882.11
ENSMUST00000102858.10
ENSMUST00000196684.2
CDS-3UTR TCA 90 bp GGGCTGTCCTGGGCTTGGGGTAGGGAAGACACGGGCGACGTGGTGGTGGCTGAGCTTCCTCCACACCAGTaGCAATGGAAGCAAAGTTGT +
Preference number: 4 (lower is better)
Translates to: GLSWAWGREDTGDVVVAELPPHQ*QWKQSC
Trigger: ACAACTTTGCTTCCATTGTCACTGGTGTGGAGGAAG...CTCAGCCACCACCACGTCGCCCGTGTCTTCCCTACCCCAAGCCCAGGACAGCCC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000080882.11
ENSMUST00000102858.10
ENSMUST00000196684.2
CDS-3UTR GCA 90 bp GGGCTGTCCTGGGCTTGGGGTAGGGAAGACACGGGCGACGTGGTGGTGGCTGAGTTATTCTTCATGCCCTaGTGGAAGACGGAGTTCCTC +
Preference number: 4 (lower is better)
Translates to: GLSWAWGREDTGDVVVAELFFMP*WKTEFL
Trigger: GAGGAACTCCGTCTTCCAGCAGGGCATGAAGAATAA...CTCAGCCACCACCACGTCGCCCGTGTCTTCCCTACCCCAAGCCCAGGACAGCCC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000080882.11
ENSMUST00000102858.10
ENSMUST00000196684.2
CDS-3UTR GCA 90 bp GGGGACCGGAGAGGGCTGTCCTGGGCTTGGGGTAGGGAAGACACGGGCGACGTGAGATCTTATTCTTCATaGCCTGCTGGAAGACGGAGT +
Preference number: 4 (lower is better)
Translates to: GDRRGLSWAWGREDTGDVRSYSS*PAGRRS
Trigger: ACTCCGTCTTCCAGCAGGGCATGAAGAATAAGATCT...CACGTCGCCCGTGTCTTCCCTACCCCAAGCCCAGGACAGCCCTCTCCGGTCCCC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000080882.11
ENSMUST00000102858.10
ENSMUST00000196684.2
CDS-3UTR GCA 90 bp CTTGGGGTAGGGAAGACACGGGCGACGTGGTGGTGGCTGAGGTCAATAGTAGGTGAGAGGCACAGGGAGTaGTCACCCTCTGCTTCCCCT +
Preference number: 4 (lower is better)
Translates to: LGVGKTRATWWWLRSIVGERHRE*SPSASP
Trigger: AGGGGAAGCAGAGGGTGAGCACTCCCTGTGCCTCTC...ACCTACTATTGACCTCAGCCACCACCACGTCGCCCGTGTCTTCCCTACCCCAAG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000102858.10
CDS-3UTR CCA 90 bp GGGGACCGGAGAGGGCTGTCCTGGGCTTGGGGTAGGGAAGACACGGGCGACGTGACGCCCGTAATGAGCTaGATGAAATGCTCAATCTCA +
Preference number: 4 (lower is better)
Translates to: GDRRGLSWAWGREDTGDVTPVMS*MKCSIS
Trigger: TGAGATTGAGCATTTCATCCAGCTCATTACGGGCGT...CACGTCGCCCGTGTCTTCCCTACCCCAAGCCCAGGACAGCCCTCTCCGGTCCCC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000080882.11
ENSMUST00000102858.10
ENSMUST00000196684.2
CDS-3UTR CCA 90 bp GACACGGGCGACGTGGTGGTGGCTGAGGTCAATAGTAGGTCTCTTTCTCCACCCGGCCACATCCATGCCTaGGCAGTAGGACAGGAAGGC +
Preference number: 4 (lower is better)
Translates to: DTGDVVVAEVNSRSLSPPGHIHA*AVGQEG
Trigger: GCCTTCCTGTCCTACTGCCCAGGCATGGATGTGGCC...GGGTGGAGAAAGAGACCTACTATTGACCTCAGCCACCACCACGTCGCCCGTGTC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000102858.10
CDS-3UTR TCA 90 bp GGGCTGTCCTGGGCTTGGGGTAGGGAAGACACGGGCGACGTGGTGGTGGCTGAGATTTGTTGGTCGAGTTaGACGGAATCTCAGCCACTT +
Preference number: 4 (lower is better)
Translates to: GLSWAWGREDTGDVVVAEICWSS*TESQPL
Trigger: AAGTGGCTGAGATTCCGTTCAACTCGACCAACAAAT...CTCAGCCACCACCACGTCGCCCGTGTCTTCCCTACCCCAAGCCCAGGACAGCCC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000080882.11
ENSMUST00000102858.10
ENSMUST00000196684.2
CDS-3UTR TCA 90 bp GGGCTGTCCTGGGCTTGGGGTAGGGAAGACACGGGCGACGTGGTGGTGGCTGAGAAAGGTTGTCTGTGGTaGAGTTCACGTCATCACAGT +
Preference number: 4 (lower is better)
Translates to: GLSWAWGREDTGDVVVAEKGCLW*SSRHHS
Trigger: ACTGTGATGACGTGAACTTCACCACAGACAACCTTT...CTCAGCCACCACCACGTCGCCCGTGTCTTCCCTACCCCAAGCCCAGGACAGCCC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000080882.11
ENSMUST00000102858.10
ENSMUST00000196684.2
CDS-3UTR TCA 90 bp TGTCCTGGGCTTGGGGTAGGGAAGACACGGGCGACGTGGTGGTGGCTGAGGTCAGGTTCCTGCGCAGGATaGGTTTGCGAATCTCATCAT +
Preference number: 4 (lower is better)
Translates to: CPGLGVGKTRATWWWLRSGSCAG*VCESHH
Trigger: ATGATGAGATTCGCAAACTCATCCTGCGCAGGAACC...TGACCTCAGCCACCACCACGTCGCCCGTGTCTTCCCTACCCCAAGCCCAGGACA
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000102858.10
CDS-3UTR GCA 90 bp GGGCTGTCCTGGGCTTGGGGTAGGGAAGACACGGGCGACGTGGTGGTGGCTGAGTCTACTGACATCTTGTaGTCTGTCATAGCCACTTCC +
Preference number: 4 (lower is better)
Translates to: GLSWAWGREDTGDVVVAESTDIL*SVIATS
Trigger: GGAAGTGGCTATGACAGAGCACAAGATGTCAGTAGA...CTCAGCCACCACCACGTCGCCCGTGTCTTCCCTACCCCAAGCCCAGGACAGCCC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000080882.11
ENSMUST00000102858.10
ENSMUST00000196684.2
CDS-3UTR GCA 90 bp GGGGACCGGAGAGGGCTGTCCTGGGCTTGGGGTAGGGAAGACACGGGCGACGTGATGAGCTGGATGAAATaGTCAATCTCAATGGCGATG +
Preference number: 4 (lower is better)
Translates to: GDRRGLSWAWGREDTGDVMSWMK*SISMAM
Trigger: CATCGCCATTGAGATTGAGCATTTCATCCAGCTCAT...CACGTCGCCCGTGTCTTCCCTACCCCAAGCCCAGGACAGCCCTCTCCGGTCCCC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000080882.11
ENSMUST00000102858.10
ENSMUST00000196684.2
CDS-3UTR GCA 90 bp GACACGGGCGACGTGGTGGTGGCTGAGGTCAATAGTAGGTCTCTTTCTCCACCCGAAGGGCCACATCCATaGCTGGGCAGTAGGACAGGA +
Preference number: 4 (lower is better)
Translates to: DTGDVVVAEVNSRSLSPPEGPHP*LGSRTG
Trigger: TCCTGTCCTACTGCCCAGGCATGGATGTGGCCCTTC...GGGTGGAGAAAGAGACCTACTATTGACCTCAGCCACCACCACGTCGCCCGTGTC
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000102858.10
CDS-3UTR GCA 90 bp GACACGGGCGACGTGGTGGTGGCTGAGGTCAATAGTAGGTCTCTTTCTCCACCCGGAGTGCTCACCCTCTaGTTCCCCTCCCAGCCTTTA +
Preference number: 4 (lower is better)
Translates to: DTGDVVVAEVNSRSLSPPGVLTL*FPSQPL
Trigger: TAAAGGCTGGGAGGGGAAGCAGAGGGTGAGCACTCC...GGGTGGAGAAAGAGACCTACTATTGACCTCAGCCACCACCACGTCGCCCGTGTC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000102858.10
CDS-3UTR TCA 90 bp GACACGGGCGACGTGGTGGTGGCTGAGGTCAATAGTAGGTCTCTTTCTCCACCCAAAGAGGTCCCTGACTaGTCCTCTGTGGTGTCTGCC +
Preference number: 4 (lower is better)
Translates to: DTGDVVVAEVNSRSLSPPKEVPD*SSVVSA
Trigger: GGCAGACACCACAGAGGATCAGTCAGGGACCTCTTT...GGGTGGAGAAAGAGACCTACTATTGACCTCAGCCACCACCACGTCGCCCGTGTC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000102858.10
CDS-3UTR TCA 90 bp CTTGGGGTAGGGAAGACACGGGCGACGTGGTGGTGGCTGAGGTCAATAGTAGGTCACTTGGAAAGAGAGTaGAAGGCAAGGCGGGGAGAG +
Preference number: 4 (lower is better)
Translates to: LGVGKTRATWWWLRSIVGHLERE*KARRGE
Trigger: CTCTCCCCGCCTTGCCTTTCACTCTCTTTCCAAGTG...ACCTACTATTGACCTCAGCCACCACCACGTCGCCCGTGTCTTCCCTACCCCAAG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000102858.10
CDS-3UTR GCA 90 bp TGTCCTGGGCTTGGGGTAGGGAAGACACGGGCGACGTGGTGGTGGCTGAGGTCAATCTCGGTGTGGTTCTaGAGAATCTCGTCAATCTGC +
Preference number: 4 (lower is better)
Translates to: CPGLGVGKTRATWWWLRSISVWF*RISSIC
Trigger: GCAGATTGACGAGATTCTGCAGAACCACACCGAGAT...TGACCTCAGCCACCACCACGTCGCCCGTGTCTTCCCTACCCCAAGCCCAGGACA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000102858.10
CDS-3UTR GCA 90 bp GGGCTGTCCTGGGCTTGGGGTAGGGAAGACACGGGCGACGTGGTGGTGGCTGAGCAAGAAGCCATTTTCTaGCAGGATGACAAAGTAGGA +
Preference number: 4 (lower is better)
Translates to: GLSWAWGREDTGDVVVAEQEAIF*QDDKVG
Trigger: TCCTACTTTGTCATCCTGGCAGAAAATGGCTTCTTG...CTCAGCCACCACCACGTCGCCCGTGTCTTCCCTACCCCAAGCCCAGGACAGCCC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000080882.11
ENSMUST00000102858.10
ENSMUST00000196684.2
CDS-3UTR GCA 90 bp GAGGAAGGCAGACACGAGAGCCATATGAGCAAGAGACAGGGACACAGAAAGAAATGGCGATGGGCGTCTTaGCCACCTCCAAGCCCGAGG +
Preference number: 4 (lower is better)
Translates to: EEGRHESHMSKRQGHRKKWRWAS*PPPSPR
Trigger: CCTCGGGCTTGGAGGTGGGCAAGACGCCCATCGCCA...TTTCTTTCTGTGTCCCTGTCTCTTGCTCATATGGCTCTCGTGTCTGCCTTCCTC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000102858.10
CDS-3UTR CCA 90 bp GACACGGGCGACGTGGTGGTGGCTGAGGTCAATAGTAGGTCTCTTTCTCCACCCCAAAGGCAAAGCCCTTaGGGAACTGTTCCTCAGGCA +
Preference number: 4 (lower is better)
Translates to: DTGDVVVAEVNSRSLSPPQRQSP*GTVPQA
Trigger: TGCCTGAGGAACAGTTCCCCAAGGGCTTTGCCTTTG...GGGTGGAGAAAGAGACCTACTATTGACCTCAGCCACCACCACGTCGCCCGTGTC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000102858.10
CDS-3UTR TCA 90 bp CTTGGGGTAGGGAAGACACGGGCGACGTGGTGGTGGCTGAGGTCAATAGTAGGTTGTCTTCTAGGTCATTaGCAGTGCGATCATCCCAGT +
Preference number: 4 (lower is better)
Translates to: LGVGKTRATWWWLRSIVGCLLGH*QCDHPS
Trigger: ACTGGGATGATCGCACTGTCAATGACCTAGAAGACA...ACCTACTATTGACCTCAGCCACCACCACGTCGCCCGTGTCTTCCCTACCCCAAG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000102858.10
CDS-3UTR GCA 90 bp GACACGGGCGACGTGGTGGTGGCTGAGGTCAATAGTAGGTCTCTTTCTCCACCCAGAATCTCGTCAATCTaGTCCGAGGTGAAGTCCTTG +
Preference number: 4 (lower is better)
Translates to: DTGDVVVAEVNSRSLSPPRISSI*SEVKSL
Trigger: CAAGGACTTCACCTCGGAGCAGATTGACGAGATTCT...GGGTGGAGAAAGAGACCTACTATTGACCTCAGCCACCACCACGTCGCCCGTGTC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000102858.10
CDS-3UTR TCA 90 bp GAGGAAGGCAGACACGAGAGCCATATGAGCAAGAGACAGGGACACAGAAAGAAAGGCCACCCAGGTGTGTaGGCTCTTGTCGAAAGAGGT +
Preference number: 4 (lower is better)
Translates to: EEGRHESHMSKRQGHRKKGHPGV*ALVERG
Trigger: ACCTCTTTCGACAAGAGCTCACACACCTGGGTGGCC...TTTCTTTCTGTGTCCCTGTCTCTTGCTCATATGGCTCTCGTGTCTGCCTTCCTC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000102858.10
CDS-3UTR GCA 90 bp GACACGGGCGACGTGGTGGTGGCTGAGGTCAATAGTAGGTCTCTTTCTCCACCCAGATCTTATTCTTCATaGCCTGCTGGAAGACGGAGT +
Preference number: 4 (lower is better)
Translates to: DTGDVVVAEVNSRSLSPPRSYSS*PAGRRS
Trigger: ACTCCGTCTTCCAGCAGGGCATGAAGAATAAGATCT...GGGTGGAGAAAGAGACCTACTATTGACCTCAGCCACCACCACGTCGCCCGTGTC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000102858.10
CDS-3UTR CCA 90 bp ATATTTGATAATTGTTCAGAATTAGAACCGGAGATGGCATACGCCAGGAGACGGCAGAGCCCGGCGATGTaGGACAGGGCCACCCAGGTG +
Preference number: 4 (lower is better)
Translates to: IFDNCSELEPEMAYARRRQSPAM*DRATQV
Trigger: CACCTGGGTGGCCCTGTCCCACATCGCCGGGCTCTG...CCGTCTCCTGGCGTATGCCATCTCCGGTTCTAATTCTGAACAATTATCAAATAT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000080882.11
ENSMUST00000102858.10
ENSMUST00000196684.2
CDS-3UTR CCA 90 bp CTTGGGGTAGGGAAGACACGGGCGACGTGGTGGTGGCTGAGGTCAATAGTAGGTGGATCCTCAGTCTCATaGATGGATAGCTGGTATTTG +
Preference number: 4 (lower is better)
Translates to: LGVGKTRATWWWLRSIVGGSSVS*MDSWYL
Trigger: CAAATACCAGCTATCCATCCATGAGACTGAGGATCC...ACCTACTATTGACCTCAGCCACCACCACGTCGCCCGTGTCTTCCCTACCCCAAG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000102858.10
CDS-3UTR TCA 90 bp ATATTTGATAATTGTTCAGAATTAGAACCGGAGATGGCATACGCCAGGAGACGGTGGCAATGCGGCCCATaGCGGTGCGGTCACCTGTGG +
Preference number: 4 (lower is better)
Translates to: IFDNCSELEPEMAYARRRWQCGP*RCGHLW
Trigger: CCACAGGTGACCGCACCGTCATGGGCCGCATTGCCA...CCGTCTCCTGGCGTATGCCATCTCCGGTTCTAATTCTGAACAATTATCAAATAT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000080882.11
ENSMUST00000102858.10
ENSMUST00000196684.2
CDS-3UTR TCA 90 bp ATATTTGATAATTGTTCAGAATTAGAACCGGAGATGGCATACGCCAGGAGACGGTGTCCTGCCCGCCCTTaGAGACGGCCCGGTTGCAGA +
Preference number: 4 (lower is better)
Translates to: IFDNCSELEPEMAYARRRCPARP*RRPGCR
Trigger: TCTGCAACCGGGCCGTCTTCAAGGGCGGGCAGGACA...CCGTCTCCTGGCGTATGCCATCTCCGGTTCTAATTCTGAACAATTATCAAATAT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000080882.11
ENSMUST00000102858.10
ENSMUST00000196684.2
CDS-3UTR GCA 90 bp ATATTTGATAATTGTTCAGAATTAGAACCGGAGATGGCATACGCCAGGAGACGGTGGCGATGGGCGTCTTaGCCACCTCCAAGCCCGAGG +
Preference number: 4 (lower is better)
Translates to: IFDNCSELEPEMAYARRRWRWAS*PPPSPR
Trigger: CCTCGGGCTTGGAGGTGGGCAAGACGCCCATCGCCA...CCGTCTCCTGGCGTATGCCATCTCCGGTTCTAATTCTGAACAATTATCAAATAT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000080882.11
ENSMUST00000102858.10
ENSMUST00000196684.2
CDS-3UTR CCA 90 bp ATATTTGATAATTGTTCAGAATTAGAACCGGAGATGGCATACGCCAGGAGACGGCGGTGCGGTCACCTGTaGCTACCACCACACCCCGAG +
Preference number: 4 (lower is better)
Translates to: IFDNCSELEPEMAYARRRRCGHL*LPPHPE
Trigger: CTCGGGGTGTGGTGGTAGCCACAGGTGACCGCACCG...CCGTCTCCTGGCGTATGCCATCTCCGGTTCTAATTCTGAACAATTATCAAATAT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000080882.11
ENSMUST00000102858.10
ENSMUST00000196684.2
CDS-3UTR CCA 90 bp ATATTTGATAATTGTTCAGAATTAGAACCGGAGATGGCATACGCCAGGAGACGGGGTCCCGGCGCTCTTTaGCCTTGCTCTTCTTGGGCG +
Preference number: 4 (lower is better)
Translates to: IFDNCSELEPEMAYARRRGPGAL*PCSSWA
Trigger: CGCCCAAGAAGAGCAAGGCCAAAGAGCGCCGGGACC...CCGTCTCCTGGCGTATGCCATCTCCGGTTCTAATTCTGAACAATTATCAAATAT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000080882.11
ENSMUST00000102858.10
ENSMUST00000196684.2
CDS-3UTR CCA 90 bp ATATTTGATAATTGTTCAGAATTAGAACCGGAGATGGCATACGCCAGGAGACGGGATGCGCAGGTCAGCTaGCACCCGGTCACCACCCTT +
Preference number: 4 (lower is better)
Translates to: IFDNCSELEPEMAYARRRDAQVS*HPVTTL
Trigger: AAGGGTGGTGACCGGGTGCCAGCTGACCTGCGCATC...CCGTCTCCTGGCGTATGCCATCTCCGGTTCTAATTCTGAACAATTATCAAATAT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000080882.11
ENSMUST00000102858.10
ENSMUST00000196684.2
CDS-3UTR GCA 90 bp ACTGATATATTTGATAATTGTTCAGAATTAGAACCGGAGATGGCATACGCCAGGGGGGGTTGTCGTGTGTaGAGTCCGGGGAGCGGGTCT +
Preference number: 4 (lower is better)
Translates to: TDIFDNCSELEPEMAYARGGCRV*SPGSGS
Trigger: AGACCCGCTCCCCGGACTGCACACACGACAACCCCC...CCTGGCGTATGCCATCTCCGGTTCTAATTCTGAACAATTATCAAATATATCAGT
50% GC, longest homopolymer 7 nt, total homopolymer stretches 11 nt.
Matches the following 3 transcripts:
ENSMUST00000080882.11
ENSMUST00000102858.10
ENSMUST00000196684.2
CDS-3UTR GCA 90 bp ACTGATATATTTGATAATTGTTCAGAATTAGAACCGGAGATGGCATACGCCAGGTGGCGATGGGCGTCTTaGCCACCTCCAAGCCCGAGG +
Preference number: 4 (lower is better)
Translates to: TDIFDNCSELEPEMAYARWRWAS*PPPSPR
Trigger: CCTCGGGCTTGGAGGTGGGCAAGACGCCCATCGCCA...CCTGGCGTATGCCATCTCCGGTTCTAATTCTGAACAATTATCAAATATATCAGT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000080882.11
ENSMUST00000102858.10
ENSMUST00000196684.2
CDS-3UTR TCA 90 bp GAGGAAGGCAGACACGAGAGCCATATGAGCAAGAGACAGGGACACAGAAAGAAAGCAGACCTCTTCTACTaGCATCTTGTGCTCTGTCAT +
Preference number: 4 (lower is better)
Translates to: EEGRHESHMSKRQGHRKKADLFY*HLVLCH
Trigger: ATGACAGAGCACAAGATGTCAGTAGAAGAGGTCTGC...TTTCTTTCTGTGTCCCTGTCTCTTGCTCATATGGCTCTCGTGTCTGCCTTCCTC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000102858.10
CDS-3UTR TCA 90 bp ATATTTGATAATTGTTCAGAATTAGAACCGGAGATGGCATACGCCAGGAGACGGGGCCACCCAGGTGTGTaGGCTCTTGTCGAAAGAGGT +
Preference number: 4 (lower is better)
Translates to: IFDNCSELEPEMAYARRRGHPGV*ALVERG
Trigger: ACCTCTTTCGACAAGAGCTCACACACCTGGGTGGCC...CCGTCTCCTGGCGTATGCCATCTCCGGTTCTAATTCTGAACAATTATCAAATAT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000080882.11
ENSMUST00000102858.10
ENSMUST00000196684.2
CDS-3UTR TCA 90 bp ATATTTGATAATTGTTCAGAATTAGAACCGGAGATGGCATACGCCAGGAGACGGTTGGCAGTGATGGGGTaGTCGCCGGTGACCATGATG +
Preference number: 4 (lower is better)
Translates to: IFDNCSELEPEMAYARRRLAVMG*SPVTMM
Trigger: CATCATGGTCACCGGCGATCACCCCATCACTGCCAA...CCGTCTCCTGGCGTATGCCATCTCCGGTTCTAATTCTGAACAATTATCAAATAT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000080882.11
ENSMUST00000102858.10
ENSMUST00000196684.2
CDS-3UTR GCA 90 bp ATATTTGATAATTGTTCAGAATTAGAACCGGAGATGGCATACGCCAGGAGACGGGTAGGCCAGGGAGATTaGAGGGACCATGTCGGTACC +
Preference number: 4 (lower is better)
Translates to: IFDNCSELEPEMAYARRRVGQGD*RDHVGT
Trigger: GGTACCGACATGGTCCCTGCAATCTCCCTGGCCTAC...CCGTCTCCTGGCGTATGCCATCTCCGGTTCTAATTCTGAACAATTATCAAATAT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000080882.11
ENSMUST00000102858.10
ENSMUST00000196684.2
CDS-3UTR CCA 90 bp ACTGATATATTTGATAATTGTTCAGAATTAGAACCGGAGATGGCATACGCCAGGGATGCGCAGGTCAGCTaGCACCCGGTCACCACCCTT +
Preference number: 4 (lower is better)
Translates to: TDIFDNCSELEPEMAYARDAQVS*HPVTTL
Trigger: AAGGGTGGTGACCGGGTGCCAGCTGACCTGCGCATC...CCTGGCGTATGCCATCTCCGGTTCTAATTCTGAACAATTATCAAATATATCAGT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000080882.11
ENSMUST00000102858.10
ENSMUST00000196684.2
CDS-3UTR CCA 90 bp ATATTTGATAATTGTTCAGAATTAGAACCGGAGATGGCATACGCCAGGAGACGGGTCCCTCTTGAGTACTaGGATGTTGTCCTGCCCGCC +
Preference number: 4 (lower is better)
Translates to: IFDNCSELEPEMAYARRRVPLEY*DVVLPA
Trigger: GGCGGGCAGGACAACATCCCAGTACTCAAGAGGGAC...CCGTCTCCTGGCGTATGCCATCTCCGGTTCTAATTCTGAACAATTATCAAATAT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000080882.11
ENSMUST00000102858.10
ENSMUST00000196684.2
CDS-3UTR CCA 90 bp ATATTTGATAATTGTTCAGAATTAGAACCGGAGATGGCATACGCCAGGAGACGGTCCCTGGGGTTCACCTaGCTGACAGGGATGTTGAGC +
Preference number: 4 (lower is better)
Translates to: IFDNCSELEPEMAYARRRSLGFT*LTGMLS
Trigger: GCTCAACATCCCTGTCAGCCAGGTGAACCCCAGGGA...CCGTCTCCTGGCGTATGCCATCTCCGGTTCTAATTCTGAACAATTATCAAATAT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000080882.11
ENSMUST00000102858.10
ENSMUST00000196684.2
CDS-3UTR TCA 90 bp ATATTTGATAATTGTTCAGAATTAGAACCGGAGATGGCATACGCCAGGAGACGGAAAGAGGTCCCTGACTaGTCCTCTGTGGTGTCTGCC +
Preference number: 4 (lower is better)
Translates to: IFDNCSELEPEMAYARRRKEVPD*SSVVSA
Trigger: GGCAGACACCACAGAGGATCAGTCAGGGACCTCTTT...CCGTCTCCTGGCGTATGCCATCTCCGGTTCTAATTCTGAACAATTATCAAATAT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000080882.11
ENSMUST00000102858.10
ENSMUST00000196684.2
CDS-3UTR TCA 90 bp ATATTTGATAATTGTTCAGAATTAGAACCGGAGATGGCATACGCCAGGAGACGGGTCGAAAGAGGTCCCTaGCTGATCCTCTGTGGTGTC +
Preference number: 4 (lower is better)
Translates to: IFDNCSELEPEMAYARRRVERGP*LILCGV
Trigger: GACACCACAGAGGATCAGTCAGGGACCTCTTTCGAC...CCGTCTCCTGGCGTATGCCATCTCCGGTTCTAATTCTGAACAATTATCAAATAT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000080882.11
ENSMUST00000102858.10
ENSMUST00000196684.2
CDS-3UTR TCA 90 bp ATATTTGATAATTGTTCAGAATTAGAACCGGAGATGGCATACGCCAGGAGACGGATTGCTCCCTGTCTCTaGCAGCCCTCCACGATGATG +
Preference number: 4 (lower is better)
Translates to: IFDNCSELEPEMAYARRRIAPCL*QPSTMM
Trigger: CATCATCGTGGAGGGCTGTCAGAGACAGGGAGCAAT...CCGTCTCCTGGCGTATGCCATCTCCGGTTCTAATTCTGAACAATTATCAAATAT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000080882.11
ENSMUST00000102858.10
ENSMUST00000196684.2
CDS-3UTR GCA 90 bp ACTGATATATTTGATAATTGTTCAGAATTAGAACCGGAGATGGCATACGCCAGGACTGGGATGTTGTCCTaGCCGCCCTTGAAGACGGCC +
Preference number: 4 (lower is better)
Translates to: TDIFDNCSELEPEMAYARTGMLS*PPLKTA
Trigger: GGCCGTCTTCAAGGGCGGGCAGGACAACATCCCAGT...CCTGGCGTATGCCATCTCCGGTTCTAATTCTGAACAATTATCAAATATATCAGT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000080882.11
ENSMUST00000102858.10
ENSMUST00000196684.2
CDS-3UTR CCA 90 bp ACTGATATATTTGATAATTGTTCAGAATTAGAACCGGAGATGGCATACGCCAGGTGCCCTGCAGGAGGATaGTGGCACAGCGGTCCAGAA +
Preference number: 4 (lower is better)
Translates to: TDIFDNCSELEPEMAYARCPAGG*WHSGPE
Trigger: TTCTGGACCGCTGTGCCACCATCCTCCTGCAGGGCA...CCTGGCGTATGCCATCTCCGGTTCTAATTCTGAACAATTATCAAATATATCAGT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000080882.11
ENSMUST00000102858.10
ENSMUST00000196684.2
CDS-3UTR CCA 90 bp ATATTTGATAATTGTTCAGAATTAGAACCGGAGATGGCATACGCCAGGAGACGGCAGTTTGTCTGTGCGTaGGTTCCTGGGCTGCCTCTT +
Preference number: 4 (lower is better)
Translates to: IFDNCSELEPEMAYARRRQFVCA*VPGLPL
Trigger: AAGAGGCAGCCCAGGAACCCACGCACAGACAAACTG...CCGTCTCCTGGCGTATGCCATCTCCGGTTCTAATTCTGAACAATTATCAAATAT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000080882.11
ENSMUST00000102858.10
ENSMUST00000196684.2
CDS-3UTR CCA 90 bp ACTGATATATTTGATAATTGTTCAGAATTAGAACCGGAGATGGCATACGCCAGGGGCCACATCCATGCCTaGGCAGTAGGACAGGAAGGC +
Preference number: 4 (lower is better)
Translates to: TDIFDNCSELEPEMAYARGHIHA*AVGQEG
Trigger: GCCTTCCTGTCCTACTGCCCAGGCATGGATGTGGCC...CCTGGCGTATGCCATCTCCGGTTCTAATTCTGAACAATTATCAAATATATCAGT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000080882.11
ENSMUST00000102858.10
ENSMUST00000196684.2
CDS-3UTR TCA 90 bp ATATTTGATAATTGTTCAGAATTAGAACCGGAGATGGCATACGCCAGGAGACGGCGTTACCCTCAGAGATaGTACCCACACCCTTGGCAA +
Preference number: 4 (lower is better)
Translates to: IFDNCSELEPEMAYARRRRYPQR*YPHPWQ
Trigger: TTGCCAAGGGTGTGGGTATCATCTCTGAGGGTAACG...CCGTCTCCTGGCGTATGCCATCTCCGGTTCTAATTCTGAACAATTATCAAATAT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000080882.11
ENSMUST00000102858.10
ENSMUST00000196684.2
CDS-3UTR GCA 90 bp GAGGAAGGCAGACACGAGAGCCATATGAGCAAGAGACAGGGACACAGAAAGAAAATGAGCTGGATGAAATaGTCAATCTCAATGGCGATG +
Preference number: 4 (lower is better)
Translates to: EEGRHESHMSKRQGHRKKMSWMK*SISMAM
Trigger: CATCGCCATTGAGATTGAGCATTTCATCCAGCTCAT...TTTCTTTCTGTGTCCCTGTCTCTTGCTCATATGGCTCTCGTGTCTGCCTTCCTC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000102858.10
CDS-3UTR CCA 90 bp ACTGATATATTTGATAATTGTTCAGAATTAGAACCGGAGATGGCATACGCCAGGGTCCCTCTTGAGTACTaGGATGTTGTCCTGCCCGCC +
Preference number: 4 (lower is better)
Translates to: TDIFDNCSELEPEMAYARVPLEY*DVVLPA
Trigger: GGCGGGCAGGACAACATCCCAGTACTCAAGAGGGAC...CCTGGCGTATGCCATCTCCGGTTCTAATTCTGAACAATTATCAAATATATCAGT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000080882.11
ENSMUST00000102858.10
ENSMUST00000196684.2
CDS-3UTR CCA 90 bp ACTGATATATTTGATAATTGTTCAGAATTAGAACCGGAGATGGCATACGCCAGGTCCCTGGGGTTCACCTaGCTGACAGGGATGTTGAGC +
Preference number: 4 (lower is better)
Translates to: TDIFDNCSELEPEMAYARSLGFT*LTGMLS
Trigger: GCTCAACATCCCTGTCAGCCAGGTGAACCCCAGGGA...CCTGGCGTATGCCATCTCCGGTTCTAATTCTGAACAATTATCAAATATATCAGT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000080882.11
ENSMUST00000102858.10
ENSMUST00000196684.2
CDS-3UTR CCA 90 bp ATATTTGATAATTGTTCAGAATTAGAACCGGAGATGGCATACGCCAGGAGACGGGAATCACACAGGCTTTaGCATCCCTGGGGTTCACCT +
Preference number: 4 (lower is better)
Translates to: IFDNCSELEPEMAYARRRESHRL*HPWGSP
Trigger: AGGTGAACCCCAGGGATGCCAAAGCCTGTGTGATTC...CCGTCTCCTGGCGTATGCCATCTCCGGTTCTAATTCTGAACAATTATCAAATAT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000080882.11
ENSMUST00000102858.10
ENSMUST00000196684.2
CDS-3UTR TCA 90 bp ACTGATATATTTGATAATTGTTCAGAATTAGAACCGGAGATGGCATACGCCAGGGTCGAAAGAGGTCCCTaGCTGATCCTCTGTGGTGTC +
Preference number: 4 (lower is better)
Translates to: TDIFDNCSELEPEMAYARVERGP*LILCGV
Trigger: GACACCACAGAGGATCAGTCAGGGACCTCTTTCGAC...CCTGGCGTATGCCATCTCCGGTTCTAATTCTGAACAATTATCAAATATATCAGT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000080882.11
ENSMUST00000102858.10
ENSMUST00000196684.2
CDS-3UTR TCA 90 bp ACTGATATATTTGATAATTGTTCAGAATTAGAACCGGAGATGGCATACGCCAGGTTGAGGTCGGTGCCGTaGATCACACAGGCTTTGGCA +
Preference number: 4 (lower is better)
Translates to: TDIFDNCSELEPEMAYARLRSVP*ITQALA
Trigger: TGCCAAAGCCTGTGTGATTCACGGCACCGACCTCAA...CCTGGCGTATGCCATCTCCGGTTCTAATTCTGAACAATTATCAAATATATCAGT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000080882.11
ENSMUST00000102858.10
ENSMUST00000196684.2
CDS-3UTR CCA 90 bp ACTGATATATTTGATAATTGTTCAGAATTAGAACCGGAGATGGCATACGCCAGGCAATCTCAATGGCGATaGGCGTCTTGCCCACCTCCA +
Preference number: 4 (lower is better)
Translates to: TDIFDNCSELEPEMAYARQSQWR*ASCPPP
Trigger: TGGAGGTGGGCAAGACGCCCATCGCCATTGAGATTG...CCTGGCGTATGCCATCTCCGGTTCTAATTCTGAACAATTATCAAATATATCAGT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000080882.11
ENSMUST00000102858.10
ENSMUST00000196684.2
CDS-3UTR CCA 90 bp ATATTTGATAATTGTTCAGAATTAGAACCGGAGATGGCATACGCCAGGAGACGGGGTGCCAAGAGGCAGTaGGATGTTAGCCATGATGAA +
Preference number: 4 (lower is better)
Translates to: IFDNCSELEPEMAYARRRGAKRQ*DVSHDE
Trigger: TTCATCATGGCTAACATCCCACTGCCTCTTGGCACC...CCGTCTCCTGGCGTATGCCATCTCCGGTTCTAATTCTGAACAATTATCAAATAT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000080882.11
ENSMUST00000102858.10
ENSMUST00000196684.2
CDS-3UTR TCA 90 bp ACTGATATATTTGATAATTGTTCAGAATTAGAACCGGAGATGGCATACGCCAGGCGTTACCCTCAGAGATaGTACCCACACCCTTGGCAA +
Preference number: 4 (lower is better)
Translates to: TDIFDNCSELEPEMAYARRYPQR*YPHPWQ
Trigger: TTGCCAAGGGTGTGGGTATCATCTCTGAGGGTAACG...CCTGGCGTATGCCATCTCCGGTTCTAATTCTGAACAATTATCAAATATATCAGT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000080882.11
ENSMUST00000102858.10
ENSMUST00000196684.2
CDS-3UTR TCA 90 bp ATATTTGATAATTGTTCAGAATTAGAACCGGAGATGGCATACGCCAGGAGACGGTGTCTTCTAGGTCATTaGCAGTGCGATCATCCCAGT +
Preference number: 4 (lower is better)
Translates to: IFDNCSELEPEMAYARRRCLLGH*QCDHPS
Trigger: ACTGGGATGATCGCACTGTCAATGACCTAGAAGACA...CCGTCTCCTGGCGTATGCCATCTCCGGTTCTAATTCTGAACAATTATCAAATAT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000080882.11
ENSMUST00000102858.10
ENSMUST00000196684.2
CDS-3UTR GCA 90 bp ATATTTGATAATTGTTCAGAATTAGAACCGGAGATGGCATACGCCAGGAGACGGATCTCGGTGTGGTTCTaGAGAATCTCGTCAATCTGC +
Preference number: 4 (lower is better)
Translates to: IFDNCSELEPEMAYARRRISVWF*RISSIC
Trigger: GCAGATTGACGAGATTCTGCAGAACCACACCGAGAT...CCGTCTCCTGGCGTATGCCATCTCCGGTTCTAATTCTGAACAATTATCAAATAT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000080882.11
ENSMUST00000102858.10
ENSMUST00000196684.2
CDS-3UTR CCA 90 bp ACTGATATATTTGATAATTGTTCAGAATTAGAACCGGAGATGGCATACGCCAGGGAATCACACAGGCTTTaGCATCCCTGGGGTTCACCT +
Preference number: 4 (lower is better)
Translates to: TDIFDNCSELEPEMAYARESHRL*HPWGSP
Trigger: AGGTGAACCCCAGGGATGCCAAAGCCTGTGTGATTC...CCTGGCGTATGCCATCTCCGGTTCTAATTCTGAACAATTATCAAATATATCAGT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000080882.11
ENSMUST00000102858.10
ENSMUST00000196684.2
CDS-3UTR TCA 90 bp ATATTTGATAATTGTTCAGAATTAGAACCGGAGATGGCATACGCCAGGAGACGGAAAGGTTGTCTGTGGTaGAGTTCACGTCATCACAGT +
Preference number: 4 (lower is better)
Translates to: IFDNCSELEPEMAYARRRKGCLW*SSRHHS
Trigger: ACTGTGATGACGTGAACTTCACCACAGACAACCTTT...CCGTCTCCTGGCGTATGCCATCTCCGGTTCTAATTCTGAACAATTATCAAATAT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000080882.11
ENSMUST00000102858.10
ENSMUST00000196684.2
CDS-3UTR TCA 90 bp ACTGATATATTTGATAATTGTTCAGAATTAGAACCGGAGATGGCATACGCCAGGGGTTCCTGCGCAGGATaGGTTTGCGAATCTCATCAT +
Preference number: 4 (lower is better)
Translates to: TDIFDNCSELEPEMAYARGSCAG*VCESHH
Trigger: ATGATGAGATTCGCAAACTCATCCTGCGCAGGAACC...CCTGGCGTATGCCATCTCCGGTTCTAATTCTGAACAATTATCAAATATATCAGT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000080882.11
ENSMUST00000102858.10
ENSMUST00000196684.2
CDS-3UTR GCA 90 bp ATATTTGATAATTGTTCAGAATTAGAACCGGAGATGGCATACGCCAGGAGACGGTCTACTGACATCTTGTaGTCTGTCATAGCCACTTCC +
Preference number: 4 (lower is better)
Translates to: IFDNCSELEPEMAYARRRSTDIL*SVIATS
Trigger: GGAAGTGGCTATGACAGAGCACAAGATGTCAGTAGA...CCGTCTCCTGGCGTATGCCATCTCCGGTTCTAATTCTGAACAATTATCAAATAT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000080882.11
ENSMUST00000102858.10
ENSMUST00000196684.2
CDS-3UTR CCA 90 bp ACTGATATATTTGATAATTGTTCAGAATTAGAACCGGAGATGGCATACGCCAGGTGGCCTTGCTCTTCTTaGGCGAGCTCTTGTCATCTT +
Preference number: 4 (lower is better)
Translates to: TDIFDNCSELEPEMAYARWPCSS*ASSCHL
Trigger: AAGATGACAAGAGCTCGCCCAAGAAGAGCAAGGCCA...CCTGGCGTATGCCATCTCCGGTTCTAATTCTGAACAATTATCAAATATATCAGT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000080882.11
ENSMUST00000102858.10
ENSMUST00000196684.2
CDS-3UTR CCA 90 bp ACTGATATATTTGATAATTGTTCAGAATTAGAACCGGAGATGGCATACGCCAGGATCACAAGGGCTTGCTaGGGGACCATGTTCTTGAAG +
Preference number: 4 (lower is better)
Translates to: TDIFDNCSELEPEMAYARITRAC*GTMFLK
Trigger: CTTCAAGAACATGGTCCCCCAGCAAGCCCTTGTGAT...CCTGGCGTATGCCATCTCCGGTTCTAATTCTGAACAATTATCAAATATATCAGT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000080882.11
ENSMUST00000102858.10
ENSMUST00000196684.2
CDS-3UTR CCA 90 bp ATATTTGATAATTGTTCAGAATTAGAACCGGAGATGGCATACGCCAGGAGACGGACGCCCGTAATGAGCTaGATGAAATGCTCAATCTCA +
Preference number: 4 (lower is better)
Translates to: IFDNCSELEPEMAYARRRTPVMS*MKCSIS
Trigger: TGAGATTGAGCATTTCATCCAGCTCATTACGGGCGT...CCGTCTCCTGGCGTATGCCATCTCCGGTTCTAATTCTGAACAATTATCAAATAT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000080882.11
ENSMUST00000102858.10
ENSMUST00000196684.2
CDS-3UTR CCA 90 bp ATATTTGATAATTGTTCAGAATTAGAACCGGAGATGGCATACGCCAGGAGACGGGGATCCTCAGTCTCATaGATGGATAGCTGGTATTTG +
Preference number: 4 (lower is better)
Translates to: IFDNCSELEPEMAYARRRGSSVS*MDSWYL
Trigger: CAAATACCAGCTATCCATCCATGAGACTGAGGATCC...CCGTCTCCTGGCGTATGCCATCTCCGGTTCTAATTCTGAACAATTATCAAATAT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000080882.11
ENSMUST00000102858.10
ENSMUST00000196684.2
CDS-3UTR TCA 90 bp ACTGATATATTTGATAATTGTTCAGAATTAGAACCGGAGATGGCATACGCCAGGGCAGACCTCTTCTACTaGCATCTTGTGCTCTGTCAT +
Preference number: 4 (lower is better)
Translates to: TDIFDNCSELEPEMAYARADLFY*HLVLCH
Trigger: ATGACAGAGCACAAGATGTCAGTAGAAGAGGTCTGC...CCTGGCGTATGCCATCTCCGGTTCTAATTCTGAACAATTATCAAATATATCAGT
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000080882.11
ENSMUST00000102858.10
ENSMUST00000196684.2
CDS-3UTR GCA 90 bp ATATTTGATAATTGTTCAGAATTAGAACCGGAGATGGCATACGCCAGGAGACGGCAAGAAGCCATTTTCTaGCAGGATGACAAAGTAGGA +
Preference number: 4 (lower is better)
Translates to: IFDNCSELEPEMAYARRRQEAIF*QDDKVG
Trigger: TCCTACTTTGTCATCCTGGCAGAAAATGGCTTCTTG...CCGTCTCCTGGCGTATGCCATCTCCGGTTCTAATTCTGAACAATTATCAAATAT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000080882.11
ENSMUST00000102858.10
ENSMUST00000196684.2
CDS-3UTR GCA 90 bp ACTGATATATTTGATAATTGTTCAGAATTAGAACCGGAGATGGCATACGCCAGGTTATTCTTCATGCCCTaGTGGAAGACGGAGTTCCTC +
Preference number: 4 (lower is better)
Translates to: TDIFDNCSELEPEMAYARLFFMP*WKTEFL
Trigger: GAGGAACTCCGTCTTCCAGCAGGGCATGAAGAATAA...CCTGGCGTATGCCATCTCCGGTTCTAATTCTGAACAATTATCAAATATATCAGT
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000080882.11
ENSMUST00000102858.10
ENSMUST00000196684.2
CDS-3UTR TCA 90 bp ACTGATATATTTGATAATTGTTCAGAATTAGAACCGGAGATGGCATACGCCAGGATTTGTTGGTCGAGTTaGACGGAATCTCAGCCACTT +
Preference number: 4 (lower is better)
Translates to: TDIFDNCSELEPEMAYARICWSS*TESQPL
Trigger: AAGTGGCTGAGATTCCGTTCAACTCGACCAACAAAT...CCTGGCGTATGCCATCTCCGGTTCTAATTCTGAACAATTATCAAATATATCAGT
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000080882.11
ENSMUST00000102858.10
ENSMUST00000196684.2
CDS-3UTR GCA 90 bp ACTGATATATTTGATAATTGTTCAGAATTAGAACCGGAGATGGCATACGCCAGGAGATCTTATTCTTCATaGCCTGCTGGAAGACGGAGT +
Preference number: 4 (lower is better)
Translates to: TDIFDNCSELEPEMAYARRSYSS*PAGRRS
Trigger: ACTCCGTCTTCCAGCAGGGCATGAAGAATAAGATCT...CCTGGCGTATGCCATCTCCGGTTCTAATTCTGAACAATTATCAAATATATCAGT
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000080882.11
ENSMUST00000102858.10
ENSMUST00000196684.2
CDS-3UTR CCA 90 bp ACTGATATATTTGATAATTGTTCAGAATTAGAACCGGAGATGGCATACGCCAGGACGCCCGTAATGAGCTaGATGAAATGCTCAATCTCA +
Preference number: 4 (lower is better)
Translates to: TDIFDNCSELEPEMAYARTPVMS*MKCSIS
Trigger: TGAGATTGAGCATTTCATCCAGCTCATTACGGGCGT...CCTGGCGTATGCCATCTCCGGTTCTAATTCTGAACAATTATCAAATATATCAGT
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000080882.11
ENSMUST00000102858.10
ENSMUST00000196684.2
CDS-3UTR CCA 90 bp ACTGATATATTTGATAATTGTTCAGAATTAGAACCGGAGATGGCATACGCCAGGGGATCCTCAGTCTCATaGATGGATAGCTGGTATTTG +
Preference number: 4 (lower is better)
Translates to: TDIFDNCSELEPEMAYARGSSVS*MDSWYL
Trigger: CAAATACCAGCTATCCATCCATGAGACTGAGGATCC...CCTGGCGTATGCCATCTCCGGTTCTAATTCTGAACAATTATCAAATATATCAGT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000080882.11
ENSMUST00000102858.10
ENSMUST00000196684.2
CDS-3UTR GCA 90 bp ACTGATATATTTGATAATTGTTCAGAATTAGAACCGGAGATGGCATACGCCAGGCAAGAAGCCATTTTCTaGCAGGATGACAAAGTAGGA +
Preference number: 4 (lower is better)
Translates to: TDIFDNCSELEPEMAYARQEAIF*QDDKVG
Trigger: TCCTACTTTGTCATCCTGGCAGAAAATGGCTTCTTG...CCTGGCGTATGCCATCTCCGGTTCTAATTCTGAACAATTATCAAATATATCAGT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000080882.11
ENSMUST00000102858.10
ENSMUST00000196684.2
CDS-3UTR CAA 90 bp GGGGACCGGAGAGGGCTGTCCTGGGCTTGGGGTAGGGAAGACACGGGCGACGTGCGAGTCTCCAGGGGGTaGTCGTGTGTGCAGTCCGGG +
Preference number: 5 (lower is better)
Translates to: GDRRGLSWAWGREDTGDVRVSRG*SCVQSG
Trigger: CCCGGACTGCACACACGACAACCCCCTGGAGACTCG...CACGTCGCCCGTGTCTTCCCTACCCCAAGCCCAGGACAGCCCTCTCCGGTCCCC
69% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000080882.11
ENSMUST00000102858.10
ENSMUST00000196684.2
CDS-3UTR CAA 90 bp GGGGACCGGAGAGGGCTGTCCTGGGCTTGGGGTAGGGAAGACACGGGCGACGTGATGGCGATGGGCGTCTaGCCCACCTCCAAGCCCGAG +
Preference number: 5 (lower is better)
Translates to: GDRRGLSWAWGREDTGDVMAMGV*PTSKPE
Trigger: CTCGGGCTTGGAGGTGGGCAAGACGCCCATCGCCAT...CACGTCGCCCGTGTCTTCCCTACCCCAAGCCCAGGACAGCCCTCTCCGGTCCCC
69% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000080882.11
ENSMUST00000102858.10
ENSMUST00000196684.2
CDS-3UTR CAA 90 bp GGGGACCGGAGAGGGCTGTCCTGGGCTTGGGGTAGGGAAGACACGGGCGACGTGTTGAAGACGGCCCGGTaGCAGAGCCCGGCGATGTGG +
Preference number: 5 (lower is better)
Translates to: GDRRGLSWAWGREDTGDVLKTAR*QSPAMW
Trigger: CCACATCGCCGGGCTCTGCAACCGGGCCGTCTTCAA...CACGTCGCCCGTGTCTTCCCTACCCCAAGCCCAGGACAGCCCTCTCCGGTCCCC
69% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000080882.11
ENSMUST00000102858.10
ENSMUST00000196684.2
CDS-3UTR CAA 90 bp GGGCTGTCCTGGGCTTGGGGTAGGGAAGACACGGGCGACGTGGTGGTGGCTGAGATGGCGATGGGCGTCTaGCCCACCTCCAAGCCCGAG +
Preference number: 5 (lower is better)
Translates to: GLSWAWGREDTGDVVVAEMAMGV*PTSKPE
Trigger: CTCGGGCTTGGAGGTGGGCAAGACGCCCATCGCCAT...CTCAGCCACCACCACGTCGCCCGTGTCTTCCCTACCCCAAGCCCAGGACAGCCC
68% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000080882.11
ENSMUST00000102858.10
ENSMUST00000196684.2
CDS-3UTR CAA 90 bp GGGGACCGGAGAGGGCTGTCCTGGGCTTGGGGTAGGGAAGACACGGGCGACGTGTTGCGAGCCATGCGCTaGGCGGTCAGCGTCAGACAC +
Preference number: 5 (lower is better)
Translates to: GDRRGLSWAWGREDTGDVLRAMR*AVSVRH
Trigger: GTGTCTGACGCTGACCGCCAAGCGCATGGCTCGCAA...CACGTCGCCCGTGTCTTCCCTACCCCAAGCCCAGGACAGCCCTCTCCGGTCCCC
68% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000080882.11
ENSMUST00000102858.10
ENSMUST00000196684.2
CDS-3UTR CAA 90 bp GGGCTGTCCTGGGCTTGGGGTAGGGAAGACACGGGCGACGTGGTGGTGGCTGAGTTGTCCTGCCCGCCCTaGAAGACGGCCCGGTTGCAG +
Preference number: 5 (lower is better)
Translates to: GLSWAWGREDTGDVVVAELSCPP*KTARLQ
Trigger: CTGCAACCGGGCCGTCTTCAAGGGCGGGCAGGACAA...CTCAGCCACCACCACGTCGCCCGTGTCTTCCCTACCCCAAGCCCAGGACAGCCC
68% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000080882.11
ENSMUST00000102858.10
ENSMUST00000196684.2
CDS-3UTR CAA 90 bp GGGGACCGGAGAGGGCTGTCCTGGGCTTGGGGTAGGGAAGACACGGGCGACGTGGTGCGATCATCCCAGTaGAGCCGGATGCCCACCAGG +
Preference number: 5 (lower is better)
Translates to: GDRRGLSWAWGREDTGDVVRSSQ*SRMPTR
Trigger: CCTGGTGGGCATCCGGCTCAACTGGGATGATCGCAC...CACGTCGCCCGTGTCTTCCCTACCCCAAGCCCAGGACAGCCCTCTCCGGTCCCC
68% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000080882.11
ENSMUST00000102858.10
ENSMUST00000196684.2
CDS-3UTR CAA 90 bp GGGGACCGGAGAGGGCTGTCCTGGGCTTGGGGTAGGGAAGACACGGGCGACGTGGAGGAGTTGTCCACCTaGCAGCCATGGGCCGAGATG +
Preference number: 5 (lower is better)
Translates to: GDRRGLSWAWGREDTGDVEELST*QPWAEM
Trigger: CATCTCGGCCCATGGCTGCAAGGTGGACAACTCCTC...CACGTCGCCCGTGTCTTCCCTACCCCAAGCCCAGGACAGCCCTCTCCGGTCCCC
67% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000080882.11
ENSMUST00000102858.10
ENSMUST00000196684.2
CDS-3UTR CAA 90 bp GGGGACCGGAGAGGGCTGTCCTGGGCTTGGGGTAGGGAAGACACGGGCGACGTGCCAGTCAGGGAGGAGTaGTCCACCTTGCAGCCATGG +
Preference number: 5 (lower is better)
Translates to: GDRRGLSWAWGREDTGDVPVREE*STLQPW
Trigger: CCATGGCTGCAAGGTGGACAACTCCTCCCTGACTGG...CACGTCGCCCGTGTCTTCCCTACCCCAAGCCCAGGACAGCCCTCTCCGGTCCCC
67% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000080882.11
ENSMUST00000102858.10
ENSMUST00000196684.2
CDS-3UTR CAA 90 bp GGGCTGTCCTGGGCTTGGGGTAGGGAAGACACGGGCGACGTGGTGGTGGCTGAGTTGCGAGCCATGCGCTaGGCGGTCAGCGTCAGACAC +
Preference number: 5 (lower is better)
Translates to: GLSWAWGREDTGDVVVAELRAMR*AVSVRH
Trigger: GTGTCTGACGCTGACCGCCAAGCGCATGGCTCGCAA...CTCAGCCACCACCACGTCGCCCGTGTCTTCCCTACCCCAAGCCCAGGACAGCCC
67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000080882.11
ENSMUST00000102858.10
ENSMUST00000196684.2
CDS-3UTR CAA 90 bp GGGCTGTCCTGGGCTTGGGGTAGGGAAGACACGGGCGACGTGGTGGTGGCTGAGGTGCGATCATCCCAGTaGAGCCGGATGCCCACCAGG +
Preference number: 5 (lower is better)
Translates to: GLSWAWGREDTGDVVVAEVRSSQ*SRMPTR
Trigger: CCTGGTGGGCATCCGGCTCAACTGGGATGATCGCAC...CTCAGCCACCACCACGTCGCCCGTGTCTTCCCTACCCCAAGCCCAGGACAGCCC
67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000080882.11
ENSMUST00000102858.10
ENSMUST00000196684.2
CDS-3UTR CAA 90 bp GGGGACCGGAGAGGGCTGTCCTGGGCTTGGGGTAGGGAAGACACGGGCGACGTGATAGCCACTTCCTTCTaGAGGTCATCCAGGTCCCGG +
Preference number: 5 (lower is better)
Translates to: GDRRGLSWAWGREDTGDVIATSF*RSSRSR
Trigger: CCGGGACCTGGATGACCTCAAGAAGGAAGTGGCTAT...CACGTCGCCCGTGTCTTCCCTACCCCAAGCCCAGGACAGCCCTCTCCGGTCCCC
64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000080882.11
ENSMUST00000102858.10
ENSMUST00000196684.2
CDS-3UTR CAA 90 bp GGGGACCGGAGAGGGCTGTCCTGGGCTTGGGGTAGGGAAGACACGGGCGACGTGCAGTCACAGCCACAATaGCTCCCTGTCTCTGACAGC +
Preference number: 5 (lower is better)
Translates to: GDRRGLSWAWGREDTGDVQSQPQ*LPVSDS
Trigger: GCTGTCAGAGACAGGGAGCAATTGTGGCTGTGACTG...CACGTCGCCCGTGTCTTCCCTACCCCAAGCCCAGGACAGCCCTCTCCGGTCCCC
64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000080882.11
ENSMUST00000102858.10
ENSMUST00000196684.2
CDS-3UTR CAA 90 bp GGGCTGTCCTGGGCTTGGGGTAGGGAAGACACGGGCGACGTGGTGGTGGCTGAGAACCACCAGCTGGGCTaGAGAGGGTACATGCGAAGG +
Preference number: 5 (lower is better)
Translates to: GLSWAWGREDTGDVVVAENHQLG*RGYMRR
Trigger: CCTTCGCATGTACCCTCTCAAGCCCAGCTGGTGGTT...CTCAGCCACCACCACGTCGCCCGTGTCTTCCCTACCCCAAGCCCAGGACAGCCC
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000080882.11
ENSMUST00000102858.10
ENSMUST00000196684.2
CDS-3UTR CAA 90 bp TGTCCTGGGCTTGGGGTAGGGAAGACACGGGCGACGTGGTGGTGGCTGAGGTCACCAGTCAGGGAGGAGTaGTCCACCTTGCAGCCATGG +
Preference number: 5 (lower is better)
Translates to: CPGLGVGKTRATWWWLRSPVREE*STLQPW
Trigger: CCATGGCTGCAAGGTGGACAACTCCTCCCTGACTGG...TGACCTCAGCCACCACCACGTCGCCCGTGTCTTCCCTACCCCAAGCCCAGGACA
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000102858.10
CDS-3UTR CAA 90 bp GGGCTGTCCTGGGCTTGGGGTAGGGAAGACACGGGCGACGTGGTGGTGGCTGAGTCAAAGGCAAAGCCCTaGGGGAACTGTTCCTCAGGC +
Preference number: 5 (lower is better)
Translates to: GLSWAWGREDTGDVVVAESKAKP*GNCSSG
Trigger: GCCTGAGGAACAGTTCCCCAAGGGCTTTGCCTTTGA...CTCAGCCACCACCACGTCGCCCGTGTCTTCCCTACCCCAAGCCCAGGACAGCCC
63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000080882.11
ENSMUST00000102858.10
ENSMUST00000196684.2
CDS-3UTR CAA 90 bp GGGCTGTCCTGGGCTTGGGGTAGGGAAGACACGGGCGACGTGGTGGTGGCTGAGGTGACCATGATGACCTaGATGCCTGCGCTTCGGCAT +
Preference number: 5 (lower is better)
Translates to: GLSWAWGREDTGDVVVAEVTMMT*MPALRH
Trigger: ATGCCGAAGCGCAGGCATCAAGGTCATCATGGTCAC...CTCAGCCACCACCACGTCGCCCGTGTCTTCCCTACCCCAAGCCCAGGACAGCCC
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000080882.11
ENSMUST00000102858.10
ENSMUST00000196684.2
CDS-3UTR CAA 90 bp GGGCTGTCCTGGGCTTGGGGTAGGGAAGACACGGGCGACGTGGTGGTGGCTGAGTTGGCCTTGCTCTTCTaGGGCGAGCTCTTGTCATCT +
Preference number: 5 (lower is better)
Translates to: GLSWAWGREDTGDVVVAELALLF*GELLSS
Trigger: AGATGACAAGAGCTCGCCCAAGAAGAGCAAGGCCAA...CTCAGCCACCACCACGTCGCCCGTGTCTTCCCTACCCCAAGCCCAGGACAGCCC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000080882.11
ENSMUST00000102858.10
ENSMUST00000196684.2
CDS-3UTR CAA 90 bp GACACGGGCGACGTGGTGGTGGCTGAGGTCAATAGTAGGTCTCTTTCTCCACCCCGAGTCTCCAGGGGGTaGTCGTGTGTGCAGTCCGGG +
Preference number: 5 (lower is better)
Translates to: DTGDVVVAEVNSRSLSPPRVSRG*SCVQSG
Trigger: CCCGGACTGCACACACGACAACCCCCTGGAGACTCG...GGGTGGAGAAAGAGACCTACTATTGACCTCAGCCACCACCACGTCGCCCGTGTC
62% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000102858.10
CDS-3UTR CAA 90 bp GGGGACCGGAGAGGGCTGTCCTGGGCTTGGGGTAGGGAAGACACGGGCGACGTGATCTCAGCCACTTTCTaGTTCCGTTCTCGCATCAGC +
Preference number: 5 (lower is better)
Translates to: GDRRGLSWAWGREDTGDVISATF*FRSRIS
Trigger: GCTGATGCGAGAACGGAACAAGAAAGTGGCTGAGAT...CACGTCGCCCGTGTCTTCCCTACCCCAAGCCCAGGACAGCCCTCTCCGGTCCCC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000080882.11
ENSMUST00000102858.10
ENSMUST00000196684.2
CDS-3UTR CAA 90 bp GGGGACCGGAGAGGGCTGTCCTGGGCTTGGGGTAGGGAAGACACGGGCGACGTGCTCTTGTCATCTTTTTaGTCCTGCGAGGTGGCGACA +
Preference number: 5 (lower is better)
Translates to: GDRRGLSWAWGREDTGDVLLSSF*SCEVAT
Trigger: TGTCGCCACCTCGCAGGACAAAAAAGATGACAAGAG...CACGTCGCCCGTGTCTTCCCTACCCCAAGCCCAGGACAGCCCTCTCCGGTCCCC
62% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000196684.2
CDS-3UTR CAA 90 bp GGGCTGTCCTGGGCTTGGGGTAGGGAAGACACGGGCGACGTGGTGGTGGCTGAGTGCACGCAGTCAGTATaGTATTTCCGGCAGACCTCT +
Preference number: 5 (lower is better)
Translates to: GLSWAWGREDTGDVVVAECTQSV*YFRQTS
Trigger: AGAGGTCTGCCGGAAATACAATACTGACTGCGTGCA...CTCAGCCACCACCACGTCGCCCGTGTCTTCCCTACCCCAAGCCCAGGACAGCCC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000080882.11
ENSMUST00000102858.10
ENSMUST00000196684.2
CDS-3UTR CAA 90 bp GGGGACCGGAGAGGGCTGTCCTGGGCTTGGGGTAGGGAAGACACGGGCGACGTGTCTTCTACTGACATCTaGTGCTCTGTCATAGCCACT +
Preference number: 5 (lower is better)
Translates to: GDRRGLSWAWGREDTGDVSSTDI*CSVIAT
Trigger: AGTGGCTATGACAGAGCACAAGATGTCAGTAGAAGA...CACGTCGCCCGTGTCTTCCCTACCCCAAGCCCAGGACAGCCCTCTCCGGTCCCC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000080882.11
ENSMUST00000102858.10
ENSMUST00000196684.2
CDS-3UTR CAA 90 bp CTTGGGGTAGGGAAGACACGGGCGACGTGGTGGTGGCTGAGGTCAATAGTAGGTAGCTGCCGGCAGAACTaGACCCATTCTGGGGTGGTG +
Preference number: 5 (lower is better)
Translates to: LGVGKTRATWWWLRSIVGSCRQN*THSGVV
Trigger: CACCACCCCAGAATGGGTCAAGTTCTGCCGGCAGCT...ACCTACTATTGACCTCAGCCACCACCACGTCGCCCGTGTCTTCCCTACCCCAAG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000102858.10
CDS-3UTR CAA 90 bp GACACGGGCGACGTGGTGGTGGCTGAGGTCAATAGTAGGTCTCTTTCTCCACCCGAGGAGTTGTCCACCTaGCAGCCATGGGCCGAGATG +
Preference number: 5 (lower is better)
Translates to: DTGDVVVAEVNSRSLSPPEELST*QPWAEM
Trigger: CATCTCGGCCCATGGCTGCAAGGTGGACAACTCCTC...GGGTGGAGAAAGAGACCTACTATTGACCTCAGCCACCACCACGTCGCCCGTGTC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000102858.10
CDS-3UTR CAA 90 bp GGGGACCGGAGAGGGCTGTCCTGGGCTTGGGGTAGGGAAGACACGGGCGACGTGTATTTGTTGGTCGAGTaGAACGGAATCTCAGCCACT +
Preference number: 5 (lower is better)
Translates to: GDRRGLSWAWGREDTGDVYLLVE*NGISAT
Trigger: AGTGGCTGAGATTCCGTTCAACTCGACCAACAAATA...CACGTCGCCCGTGTCTTCCCTACCCCAAGCCCAGGACAGCCCTCTCCGGTCCCC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000080882.11
ENSMUST00000102858.10
ENSMUST00000196684.2
CDS-3UTR CAA 90 bp GGGGACCGGAGAGGGCTGTCCTGGGCTTGGGGTAGGGAAGACACGGGCGACGTGGATAGCTGGTATTTGTaGGTCGAGTTGAACGGAATC +
Preference number: 5 (lower is better)
Translates to: GDRRGLSWAWGREDTGDVDSWYL*VELNGI
Trigger: GATTCCGTTCAACTCGACCAACAAATACCAGCTATC...CACGTCGCCCGTGTCTTCCCTACCCCAAGCCCAGGACAGCCCTCTCCGGTCCCC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000080882.11
ENSMUST00000102858.10
ENSMUST00000196684.2
CDS-3UTR CAA 90 bp CTTGGGGTAGGGAAGACACGGGCGACGTGGTGGTGGCTGAGGTCAATAGTAGGTTGGCTGACAGGGATGTaGAGCCGGGCAGCGATGTCT +
Preference number: 5 (lower is better)
Translates to: LGVGKTRATWWWLRSIVGWLTGM*SRAAMS
Trigger: AGACATCGCTGCCCGGCTCAACATCCCTGTCAGCCA...ACCTACTATTGACCTCAGCCACCACCACGTCGCCCGTGTCTTCCCTACCCCAAG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000102858.10
CDS GCA 90 bp GAGGGAAGAGAAAGAAGAACGGACACATCTGAGAGGCACAGGGAGTaGTCACCCTCTGCTTCCCCTCCCAGCCTTTACCCCTGGCCATGC +
Preference number: 5 (lower is better)
Translates to: EGRERRTDTSERHRE*SPSASPPSLYPWPC
Trigger: GCATGGCCAGGGGTAAAGGCTGGGAGGGGAAGCAGAGGGTGAGCACTCCCTGTGCCTCTCAGATGTGTCCGTTCTTCTTTCTCTTCCCTC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000102858.10
CDS-3UTR CAA 90 bp GGGCTGTCCTGGGCTTGGGGTAGGGAAGACACGGGCGACGTGGTGGTGGCTGAGGATAGCTGGTATTTGTaGGTCGAGTTGAACGGAATC +
Preference number: 5 (lower is better)
Translates to: GLSWAWGREDTGDVVVAEDSWYL*VELNGI
Trigger: GATTCCGTTCAACTCGACCAACAAATACCAGCTATC...CTCAGCCACCACCACGTCGCCCGTGTCTTCCCTACCCCAAGCCCAGGACAGCCC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000080882.11
ENSMUST00000102858.10
ENSMUST00000196684.2
CDS-3UTR CAA 90 bp CTTGGGGTAGGGAAGACACGGGCGACGTGGTGGTGGCTGAGGTCAATAGTAGGTATAGCCACTTCCTTCTaGAGGTCATCCAGGTCCCGG +
Preference number: 5 (lower is better)
Translates to: LGVGKTRATWWWLRSIVGIATSF*RSSRSR
Trigger: CCGGGACCTGGATGACCTCAAGAAGGAAGTGGCTAT...ACCTACTATTGACCTCAGCCACCACCACGTCGCCCGTGTCTTCCCTACCCCAAG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000102858.10
CDS-3UTR CAA 90 bp GACACGGGCGACGTGGTGGTGGCTGAGGTCAATAGTAGGTCTCTTTCTCCACCCGTGACCATGATGACCTaGATGCCTGCGCTTCGGCAT +
Preference number: 5 (lower is better)
Translates to: DTGDVVVAEVNSRSLSPPVTMMT*MPALRH
Trigger: ATGCCGAAGCGCAGGCATCAAGGTCATCATGGTCAC...GGGTGGAGAAAGAGACCTACTATTGACCTCAGCCACCACCACGTCGCCCGTGTC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000102858.10
CDS-3UTR CAA 90 bp CTTGGGGTAGGGAAGACACGGGCGACGTGGTGGTGGCTGAGGTCAATAGTAGGTCAGTCACAGCCACAATaGCTCCCTGTCTCTGACAGC +
Preference number: 5 (lower is better)
Translates to: LGVGKTRATWWWLRSIVGQSQPQ*LPVSDS
Trigger: GCTGTCAGAGACAGGGAGCAATTGTGGCTGTGACTG...ACCTACTATTGACCTCAGCCACCACCACGTCGCCCGTGTCTTCCCTACCCCAAG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000102858.10
CDS-3UTR CAA 90 bp GACACGGGCGACGTGGTGGTGGCTGAGGTCAATAGTAGGTCTCTTTCTCCACCCTTGGCCTTGCTCTTCTaGGGCGAGCTCTTGTCATCT +
Preference number: 5 (lower is better)
Translates to: DTGDVVVAEVNSRSLSPPLALLF*GELLSS
Trigger: AGATGACAAGAGCTCGCCCAAGAAGAGCAAGGCCAA...GGGTGGAGAAAGAGACCTACTATTGACCTCAGCCACCACCACGTCGCCCGTGTC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000102858.10
CDS-3UTR CAA 90 bp GAGGAAGGCAGACACGAGAGCCATATGAGCAAGAGACAGGGACACAGAAAGAAATTGAAGACGGCCCGGTaGCAGAGCCCGGCGATGTGG +
Preference number: 5 (lower is better)
Translates to: EEGRHESHMSKRQGHRKKLKTAR*QSPAMW
Trigger: CCACATCGCCGGGCTCTGCAACCGGGCCGTCTTCAA...TTTCTTTCTGTGTCCCTGTCTCTTGCTCATATGGCTCTCGTGTCTGCCTTCCTC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000102858.10
CDS-3UTR CAA 90 bp TGTCCTGGGCTTGGGGTAGGGAAGACACGGGCGACGTGGTGGTGGCTGAGGTCAGATAGCTGGTATTTGTaGGTCGAGTTGAACGGAATC +
Preference number: 5 (lower is better)
Translates to: CPGLGVGKTRATWWWLRSDSWYL*VELNGI
Trigger: GATTCCGTTCAACTCGACCAACAAATACCAGCTATC...TGACCTCAGCCACCACCACGTCGCCCGTGTCTTCCCTACCCCAAGCCCAGGACA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000102858.10
CDS-3UTR CAA 90 bp GAGGAAGGCAGACACGAGAGCCATATGAGCAAGAGACAGGGACACAGAAAGAAACCGGATCACAAGGGCTaGCTGGGGGACCATGTTCTT +
Preference number: 5 (lower is better)
Translates to: EEGRHESHMSKRQGHRKKPDHKG*LGDHVL
Trigger: AAGAACATGGTCCCCCAGCAAGCCCTTGTGATCCGG...TTTCTTTCTGTGTCCCTGTCTCTTGCTCATATGGCTCTCGTGTCTGCCTTCCTC
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000102858.10
CDS-3UTR CAA 90 bp ATATTTGATAATTGTTCAGAATTAGAACCGGAGATGGCATACGCCAGGAGACGGTTGTCCTGCCCGCCCTaGAAGACGGCCCGGTTGCAG +
Preference number: 5 (lower is better)
Translates to: IFDNCSELEPEMAYARRRLSCPP*KTARLQ
Trigger: CTGCAACCGGGCCGTCTTCAAGGGCGGGCAGGACAA...CCGTCTCCTGGCGTATGCCATCTCCGGTTCTAATTCTGAACAATTATCAAATAT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000080882.11
ENSMUST00000102858.10
ENSMUST00000196684.2
CDS-3UTR CAA 90 bp ATATTTGATAATTGTTCAGAATTAGAACCGGAGATGGCATACGCCAGGAGACGGAGGTCCCGGCGCTCTTaGGCCTTGCTCTTCTTGGGC +
Preference number: 5 (lower is better)
Translates to: IFDNCSELEPEMAYARRRRSRRS*ALLFLG
Trigger: GCCCAAGAAGAGCAAGGCCAAAGAGCGCCGGGACCT...CCGTCTCCTGGCGTATGCCATCTCCGGTTCTAATTCTGAACAATTATCAAATAT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000080882.11
ENSMUST00000102858.10
ENSMUST00000196684.2
CDS-3UTR CAA 90 bp ATATTTGATAATTGTTCAGAATTAGAACCGGAGATGGCATACGCCAGGAGACGGGTGCGATCATCCCAGTaGAGCCGGATGCCCACCAGG +
Preference number: 5 (lower is better)
Translates to: IFDNCSELEPEMAYARRRVRSSQ*SRMPTR
Trigger: CCTGGTGGGCATCCGGCTCAACTGGGATGATCGCAC...CCGTCTCCTGGCGTATGCCATCTCCGGTTCTAATTCTGAACAATTATCAAATAT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000080882.11
ENSMUST00000102858.10
ENSMUST00000196684.2
CDS-3UTR CAA 90 bp ATATTTGATAATTGTTCAGAATTAGAACCGGAGATGGCATACGCCAGGAGACGGAGCTGCCGGCAGAACTaGACCCATTCTGGGGTGGTG +
Preference number: 5 (lower is better)
Translates to: IFDNCSELEPEMAYARRRSCRQN*THSGVV
Trigger: CACCACCCCAGAATGGGTCAAGTTCTGCCGGCAGCT...CCGTCTCCTGGCGTATGCCATCTCCGGTTCTAATTCTGAACAATTATCAAATAT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000080882.11
ENSMUST00000102858.10
ENSMUST00000196684.2
CDS-3UTR CAA 90 bp ACTGATATATTTGATAATTGTTCAGAATTAGAACCGGAGATGGCATACGCCAGGCGAGTCTCCAGGGGGTaGTCGTGTGTGCAGTCCGGG +
Preference number: 5 (lower is better)
Translates to: TDIFDNCSELEPEMAYARRVSRG*SCVQSG
Trigger: CCCGGACTGCACACACGACAACCCCCTGGAGACTCG...CCTGGCGTATGCCATCTCCGGTTCTAATTCTGAACAATTATCAAATATATCAGT
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000080882.11
ENSMUST00000102858.10
ENSMUST00000196684.2
CDS-3UTR CAA 90 bp ACTGATATATTTGATAATTGTTCAGAATTAGAACCGGAGATGGCATACGCCAGGTTGAAGACGGCCCGGTaGCAGAGCCCGGCGATGTGG +
Preference number: 5 (lower is better)
Translates to: TDIFDNCSELEPEMAYARLKTAR*QSPAMW
Trigger: CCACATCGCCGGGCTCTGCAACCGGGCCGTCTTCAA...CCTGGCGTATGCCATCTCCGGTTCTAATTCTGAACAATTATCAAATATATCAGT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000080882.11
ENSMUST00000102858.10
ENSMUST00000196684.2
CDS-3UTR CAA 90 bp GAGGAAGGCAGACACGAGAGCCATATGAGCAAGAGACAGGGACACAGAAAGAAAATCTCAGCCACTTTCTaGTTCCGTTCTCGCATCAGC +
Preference number: 5 (lower is better)
Translates to: EEGRHESHMSKRQGHRKKISATF*FRSRIS
Trigger: GCTGATGCGAGAACGGAACAAGAAAGTGGCTGAGAT...TTTCTTTCTGTGTCCCTGTCTCTTGCTCATATGGCTCTCGTGTCTGCCTTCCTC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000102858.10
CDS-3UTR CAA 90 bp ATATTTGATAATTGTTCAGAATTAGAACCGGAGATGGCATACGCCAGGAGACGGTGGCTGACAGGGATGTaGAGCCGGGCAGCGATGTCT +
Preference number: 5 (lower is better)
Translates to: IFDNCSELEPEMAYARRRWLTGM*SRAAMS
Trigger: AGACATCGCTGCCCGGCTCAACATCCCTGTCAGCCA...CCGTCTCCTGGCGTATGCCATCTCCGGTTCTAATTCTGAACAATTATCAAATAT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000080882.11
ENSMUST00000102858.10
ENSMUST00000196684.2
CDS-3UTR CAA 90 bp ACTGATATATTTGATAATTGTTCAGAATTAGAACCGGAGATGGCATACGCCAGGAGGTCCCGGCGCTCTTaGGCCTTGCTCTTCTTGGGC +
Preference number: 5 (lower is better)
Translates to: TDIFDNCSELEPEMAYARRSRRS*ALLFLG
Trigger: GCCCAAGAAGAGCAAGGCCAAAGAGCGCCGGGACCT...CCTGGCGTATGCCATCTCCGGTTCTAATTCTGAACAATTATCAAATATATCAGT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000080882.11
ENSMUST00000102858.10
ENSMUST00000196684.2
CDS-3UTR CAA 90 bp ATATTTGATAATTGTTCAGAATTAGAACCGGAGATGGCATACGCCAGGAGACGGCCGGATCACAAGGGCTaGCTGGGGGACCATGTTCTT +
Preference number: 5 (lower is better)
Translates to: IFDNCSELEPEMAYARRRPDHKG*LGDHVL
Trigger: AAGAACATGGTCCCCCAGCAAGCCCTTGTGATCCGG...CCGTCTCCTGGCGTATGCCATCTCCGGTTCTAATTCTGAACAATTATCAAATAT
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000080882.11
ENSMUST00000102858.10
ENSMUST00000196684.2
CDS-3UTR CAA 90 bp ACTGATATATTTGATAATTGTTCAGAATTAGAACCGGAGATGGCATACGCCAGGTTGCGAGCCATGCGCTaGGCGGTCAGCGTCAGACAC +
Preference number: 5 (lower is better)
Translates to: TDIFDNCSELEPEMAYARLRAMR*AVSVRH
Trigger: GTGTCTGACGCTGACCGCCAAGCGCATGGCTCGCAA...CCTGGCGTATGCCATCTCCGGTTCTAATTCTGAACAATTATCAAATATATCAGT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000080882.11
ENSMUST00000102858.10
ENSMUST00000196684.2
CDS-3UTR CAA 90 bp ATATTTGATAATTGTTCAGAATTAGAACCGGAGATGGCATACGCCAGGAGACGGAACCACCAGCTGGGCTaGAGAGGGTACATGCGAAGG +
Preference number: 5 (lower is better)
Translates to: IFDNCSELEPEMAYARRRNHQLG*RGYMRR
Trigger: CCTTCGCATGTACCCTCTCAAGCCCAGCTGGTGGTT...CCGTCTCCTGGCGTATGCCATCTCCGGTTCTAATTCTGAACAATTATCAAATAT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000080882.11
ENSMUST00000102858.10
ENSMUST00000196684.2
CDS-3UTR CAA 90 bp ACTGATATATTTGATAATTGTTCAGAATTAGAACCGGAGATGGCATACGCCAGGCCAGTCAGGGAGGAGTaGTCCACCTTGCAGCCATGG +
Preference number: 5 (lower is better)
Translates to: TDIFDNCSELEPEMAYARPVREE*STLQPW
Trigger: CCATGGCTGCAAGGTGGACAACTCCTCCCTGACTGG...CCTGGCGTATGCCATCTCCGGTTCTAATTCTGAACAATTATCAAATATATCAGT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000080882.11
ENSMUST00000102858.10
ENSMUST00000196684.2
CDS-3UTR CAA 90 bp ATATTTGATAATTGTTCAGAATTAGAACCGGAGATGGCATACGCCAGGAGACGGTCAAAGGCAAAGCCCTaGGGGAACTGTTCCTCAGGC +
Preference number: 5 (lower is better)
Translates to: IFDNCSELEPEMAYARRRSKAKP*GNCSSG
Trigger: GCCTGAGGAACAGTTCCCCAAGGGCTTTGCCTTTGA...CCGTCTCCTGGCGTATGCCATCTCCGGTTCTAATTCTGAACAATTATCAAATAT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000080882.11
ENSMUST00000102858.10
ENSMUST00000196684.2
CDS-3UTR CAA 90 bp ATATTTGATAATTGTTCAGAATTAGAACCGGAGATGGCATACGCCAGGAGACGGGTGACCATGATGACCTaGATGCCTGCGCTTCGGCAT +
Preference number: 5 (lower is better)
Translates to: IFDNCSELEPEMAYARRRVTMMT*MPALRH
Trigger: ATGCCGAAGCGCAGGCATCAAGGTCATCATGGTCAC...CCGTCTCCTGGCGTATGCCATCTCCGGTTCTAATTCTGAACAATTATCAAATAT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000080882.11
ENSMUST00000102858.10
ENSMUST00000196684.2
CDS-3UTR CAA 90 bp ACTGATATATTTGATAATTGTTCAGAATTAGAACCGGAGATGGCATACGCCAGGTGGCTGACAGGGATGTaGAGCCGGGCAGCGATGTCT +
Preference number: 5 (lower is better)
Translates to: TDIFDNCSELEPEMAYARWLTGM*SRAAMS
Trigger: AGACATCGCTGCCCGGCTCAACATCCCTGTCAGCCA...CCTGGCGTATGCCATCTCCGGTTCTAATTCTGAACAATTATCAAATATATCAGT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000080882.11
ENSMUST00000102858.10
ENSMUST00000196684.2
CDS-3UTR CAA 90 bp ATATTTGATAATTGTTCAGAATTAGAACCGGAGATGGCATACGCCAGGAGACGGCAGTCACAGCCACAATaGCTCCCTGTCTCTGACAGC +
Preference number: 5 (lower is better)
Translates to: IFDNCSELEPEMAYARRRQSQPQ*LPVSDS
Trigger: GCTGTCAGAGACAGGGAGCAATTGTGGCTGTGACTG...CCGTCTCCTGGCGTATGCCATCTCCGGTTCTAATTCTGAACAATTATCAAATAT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000080882.11
ENSMUST00000102858.10
ENSMUST00000196684.2
CDS CCA 90 bp TTCATCACTAGCAGGTACCGGTTGTCATTGGGATCCTCAGTCTCATaGATGGATAGCTGGTATTTGTTGGTCGAGTTGAACGGAATCTCA +
Preference number: 5 (lower is better)
Translates to: FITSRYRLSLGSSVS*MDSWYLLVELNGIS
Trigger: TGAGATTCCGTTCAACTCGACCAACAAATACCAGCTATCCATCCATGAGACTGAGGATCCCAATGACAACCGGTACCTGCTAGTGATGAA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000080882.11
ENSMUST00000102858.10
ENSMUST00000196684.2
CDS-3UTR CAA 90 bp ATATTTGATAATTGTTCAGAATTAGAACCGGAGATGGCATACGCCAGGAGACGGTTGGCCTTGCTCTTCTaGGGCGAGCTCTTGTCATCT +
Preference number: 5 (lower is better)
Translates to: IFDNCSELEPEMAYARRRLALLF*GELLSS
Trigger: AGATGACAAGAGCTCGCCCAAGAAGAGCAAGGCCAA...CCGTCTCCTGGCGTATGCCATCTCCGGTTCTAATTCTGAACAATTATCAAATAT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000080882.11
ENSMUST00000102858.10
ENSMUST00000196684.2
CDS-3UTR CAA 90 bp ACTGATATATTTGATAATTGTTCAGAATTAGAACCGGAGATGGCATACGCCAGGCCGGATCACAAGGGCTaGCTGGGGGACCATGTTCTT +
Preference number: 5 (lower is better)
Translates to: TDIFDNCSELEPEMAYARPDHKG*LGDHVL
Trigger: AAGAACATGGTCCCCCAGCAAGCCCTTGTGATCCGG...CCTGGCGTATGCCATCTCCGGTTCTAATTCTGAACAATTATCAAATATATCAGT
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000080882.11
ENSMUST00000102858.10
ENSMUST00000196684.2
CDS-3UTR CAA 90 bp ACTGATATATTTGATAATTGTTCAGAATTAGAACCGGAGATGGCATACGCCAGGAACCACCAGCTGGGCTaGAGAGGGTACATGCGAAGG +
Preference number: 5 (lower is better)
Translates to: TDIFDNCSELEPEMAYARNHQLG*RGYMRR
Trigger: CCTTCGCATGTACCCTCTCAAGCCCAGCTGGTGGTT...CCTGGCGTATGCCATCTCCGGTTCTAATTCTGAACAATTATCAAATATATCAGT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000080882.11
ENSMUST00000102858.10
ENSMUST00000196684.2
CDS-3UTR CAA 90 bp ACTGATATATTTGATAATTGTTCAGAATTAGAACCGGAGATGGCATACGCCAGGATAGCCACTTCCTTCTaGAGGTCATCCAGGTCCCGG +
Preference number: 5 (lower is better)
Translates to: TDIFDNCSELEPEMAYARIATSF*RSSRSR
Trigger: CCGGGACCTGGATGACCTCAAGAAGGAAGTGGCTAT...CCTGGCGTATGCCATCTCCGGTTCTAATTCTGAACAATTATCAAATATATCAGT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000080882.11
ENSMUST00000102858.10
ENSMUST00000196684.2
CDS-3UTR CAA 90 bp ATATTTGATAATTGTTCAGAATTAGAACCGGAGATGGCATACGCCAGGAGACGGTGCACGCAGTCAGTATaGTATTTCCGGCAGACCTCT +
Preference number: 5 (lower is better)
Translates to: IFDNCSELEPEMAYARRRCTQSV*YFRQTS
Trigger: AGAGGTCTGCCGGAAATACAATACTGACTGCGTGCA...CCGTCTCCTGGCGTATGCCATCTCCGGTTCTAATTCTGAACAATTATCAAATAT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000080882.11
ENSMUST00000102858.10
ENSMUST00000196684.2
CDS-3UTR CAA 90 bp ACTGATATATTTGATAATTGTTCAGAATTAGAACCGGAGATGGCATACGCCAGGATCTCAGCCACTTTCTaGTTCCGTTCTCGCATCAGC +
Preference number: 5 (lower is better)
Translates to: TDIFDNCSELEPEMAYARISATF*FRSRIS
Trigger: GCTGATGCGAGAACGGAACAAGAAAGTGGCTGAGAT...CCTGGCGTATGCCATCTCCGGTTCTAATTCTGAACAATTATCAAATATATCAGT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000080882.11
ENSMUST00000102858.10
ENSMUST00000196684.2
CDS-3UTR CAA 90 bp ATATTTGATAATTGTTCAGAATTAGAACCGGAGATGGCATACGCCAGGAGACGGTATTTGTTGGTCGAGTaGAACGGAATCTCAGCCACT +
Preference number: 5 (lower is better)
Translates to: IFDNCSELEPEMAYARRRYLLVE*NGISAT
Trigger: AGTGGCTGAGATTCCGTTCAACTCGACCAACAAATA...CCGTCTCCTGGCGTATGCCATCTCCGGTTCTAATTCTGAACAATTATCAAATAT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000080882.11
ENSMUST00000102858.10
ENSMUST00000196684.2
CDS-3UTR CAA 90 bp ACTGATATATTTGATAATTGTTCAGAATTAGAACCGGAGATGGCATACGCCAGGTCTTCTACTGACATCTaGTGCTCTGTCATAGCCACT +
Preference number: 5 (lower is better)
Translates to: TDIFDNCSELEPEMAYARSSTDI*CSVIAT
Trigger: AGTGGCTATGACAGAGCACAAGATGTCAGTAGAAGA...CCTGGCGTATGCCATCTCCGGTTCTAATTCTGAACAATTATCAAATATATCAGT
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000080882.11
ENSMUST00000102858.10
ENSMUST00000196684.2
CDS-3UTR CAA 90 bp ACTGATATATTTGATAATTGTTCAGAATTAGAACCGGAGATGGCATACGCCAGGTATTTGTTGGTCGAGTaGAACGGAATCTCAGCCACT +
Preference number: 5 (lower is better)
Translates to: TDIFDNCSELEPEMAYARYLLVE*NGISAT
Trigger: AGTGGCTGAGATTCCGTTCAACTCGACCAACAAATA...CCTGGCGTATGCCATCTCCGGTTCTAATTCTGAACAATTATCAAATATATCAGT
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000080882.11
ENSMUST00000102858.10
ENSMUST00000196684.2
CDS TCA 72 bp GTTTGTCTGTGCGTGGGTTCCTGGGCTGCCTCTTCATaGTGTCGCTCTCGGCAGCCTCGTAGGCCAGGGAGA +
Preference number: 6 (lower is better)
Translates to: VCLCVGSWAASS*CRSRQPRRPGR
Trigger: TCTCCCTGGCCTACGAGGCTGCCGAGAGCGACATCATGAAGAGGCAGCCCAGGAACCCACGCACAGACAAAC
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000080882.11
ENSMUST00000102858.10
ENSMUST00000196684.2
CDS CAA 72 bp ATCACGACTGCGGCCAGCACTATGCCCAGGTACAGATaGTCACCGGAAGGGTCATCCTCCGTCCCTGCCTGG +
Preference number: 6 (lower is better)
Translates to: ITTAASTMPRYR*SPEGSSSVPAW
Trigger: CCAGGCAGGGACGGAGGATGACCCTTCCGGTGACAATCTGTACCTGGGCATAGTGCTGGCCGCAGTCGTGAT
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000080882.11
ENSMUST00000102858.10
ENSMUST00000196684.2
CDS TCA 72 bp CAGGTGTGTGAGCTCTTGTCGAAAGAGGTCCCTGACTaGTCCTCTGTGGTGTCTGCCTCGTGGATCTGGTTG +
Preference number: 6 (lower is better)
Translates to: QVCELLSKEVPD*SSVVSASWIWL
Trigger: CAACCAGATCCACGAGGCAGACACCACAGAGGATCAGTCAGGGACCTCTTTCGACAAGAGCTCACACACCTG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000080882.11
ENSMUST00000102858.10
ENSMUST00000196684.2
CDS CAA 72 bp ACTTCCTTCTTGAGGTCATCCAGGTCCCGGCGCTCTTaGGCCTTGCTCTTCTTGGGCGAGCTCTTGTCATCT +
Preference number: 6 (lower is better)
Translates to: TSFLRSSRSRRS*ALLFLGELLSS
Trigger: AGATGACAAGAGCTCGCCCAAGAAGAGCAAGGCCAAAGAGCGCCGGGACCTGGATGACCTCAAGAAGGAAGT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000080882.11
ENSMUST00000102858.10
ENSMUST00000196684.2
CDS CAA 72 bp ACTGACATCTTGTGCTCTGTCATAGCCACTTCCTTCTaGAGGTCATCCAGGTCCCGGCGCTCTTTGGCCTTG +
Preference number: 6 (lower is better)
Translates to: TDILCSVIATSF*RSSRSRRSLAL
Trigger: CAAGGCCAAAGAGCGCCGGGACCTGGATGACCTCAAGAAGGAAGTGGCTATGACAGAGCACAAGATGTCAGT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000080882.11
ENSMUST00000102858.10
ENSMUST00000196684.2
CDS CAA 90 bp AGCTGGTATTTGTTGGTCGAGTTGAACGGAATCTCAGCCACTTTCTaGTTCCGTTCTCGCATCAGCTTTACGGAACCCGAGGACAGCTCA +
Preference number: 6 (lower is better)
Translates to: SWYLLVELNGISATF*FRSRISFTEPEDSS
Trigger: TGAGCTGTCCTCGGGTTCCGTAAAGCTGATGCGAGAACGGAACAAGAAAGTGGCTGAGATTCCGTTCAACTCGACCAACAAATACCAGCT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000080882.11
ENSMUST00000102858.10
ENSMUST00000196684.2
CDS CAA 72 bp TTGTTGGTCGAGTTGAACGGAATCTCAGCCACTTTCTaGTTCCGTTCTCGCATCAGCTTTACGGAACCCGAG +
Preference number: 6 (lower is better)
Translates to: LLVELNGISATF*FRSRISFTEPE
Trigger: CTCGGGTTCCGTAAAGCTGATGCGAGAACGGAACAAGAAAGTGGCTGAGATTCCGTTCAACTCGACCAACAA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000080882.11
ENSMUST00000102858.10
ENSMUST00000196684.2
CDS CAA 72 bp GCTTTACTGTGTGTCAGACCCTGCACGCAGTCAGTATaGTATTTCCGGCAGACCTCTTCTACTGACATCTTG +
Preference number: 6 (lower is better)
Translates to: ALLCVRPCTQSV*YFRQTSSTDIL
Trigger: CAAGATGTCAGTAGAAGAGGTCTGCCGGAAATACAATACTGACTGCGTGCAGGGTCTGACACACAGTAAAGC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000080882.11
ENSMUST00000102858.10
ENSMUST00000196684.2
CDS TCA 72 bp TCTCATGGATGGATAGCTGGTATTTGTTGGTCGAGTTaGACGGAATCTCAGCCACTTTCTTGTTCCGTTCTC +
Preference number: 6 (lower is better)
Translates to: SHGWIAGICWSS*TESQPLSCSVL
Trigger: GAGAACGGAACAAGAAAGTGGCTGAGATTCCGTTCAACTCGACCAACAAATACCAGCTATCCATCCATGAGA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000080882.11
ENSMUST00000102858.10
ENSMUST00000196684.2
CDS CAA 72 bp GTATTGTATTTCCGGCAGACCTCTTCTACTGACATCTaGTGCTCTGTCATAGCCACTTCCTTCTTGAGGTCA +
Preference number: 6 (lower is better)
Translates to: VLYFRQTSSTDI*CSVIATSFLRS
Trigger: TGACCTCAAGAAGGAAGTGGCTATGACAGAGCACAAGATGTCAGTAGAAGAGGTCTGCCGGAAATACAATAC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000080882.11
ENSMUST00000102858.10
ENSMUST00000196684.2
CDS CAA 72 bp GTCTCATGGATGGATAGCTGGTATTTGTTGGTCGAGTaGAACGGAATCTCAGCCACTTTCTTGTTCCGTTCT +
Preference number: 6 (lower is better)
Translates to: VSWMDSWYLLVE*NGISATFLFRS
Trigger: AGAACGGAACAAGAAAGTGGCTGAGATTCCGTTCAACTCGACCAACAAATACCAGCTATCCATCCATGAGAC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000080882.11
ENSMUST00000102858.10
ENSMUST00000196684.2