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Pregenerated sensors for ATP13A3 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000022533

Ensembl transcript IDs: ENSMUST00000061350.13, ENSMUST00000100013.9, ENSMUST00000229503.2, ENSMUST00000229616.2

Found 242 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR GCA 90 bp TTTGAATCTCAGGCTTGTTGGCGCCACACTCGCCCAAGCACTGTCTaGAGCATTCCCTTACAGCAGTTGGTGCTACAAGATAGAAACCGG +
Preference number: 1 (lower is better)
Translates to: FESQACWRHTRPSTV*SIPLQQLVLQDRNR
Trigger: CCGGTTTCTATCTTGTAGCACCAACTGCTGTAAGGGAATGCTGCAGACAGTGCTTGGGCGAGTGTGGCGCCAACAAGCCTGAGATTCAAA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000061350.13
ENSMUST00000100013.9
3UTR GCA 90 bp ACTATCTATTCCAGGACTAAACAATTCTCCTGCCTCAGCCTCCTGTaGAGGACTAGGGGCCTTTACTTATCATGCCTGGCTGCTCAGAAA +
Preference number: 1 (lower is better)
Translates to: TIYSRTKQFSCLSLL*RTRGLYLSCLAAQK
Trigger: TTTCTGAGCAGCCAGGCATGATAAGTAAAGGCCCCTAGTCCTGCACAGGAGGCTGAGGCAGGAGAATTGTTTAGTCCTGGAATAGATAGT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000061350.13
ENSMUST00000100013.9
3UTR GCA 90 bp CTGAGACAGGCTTTTACTATCTATTCCAGGACTAAACAATTCTCCTaGCTCAGCCTCCTGTGCAGGACTAGGGGCCTTTACTTATCATGC +
Preference number: 1 (lower is better)
Translates to: LRQAFTIYSRTKQFS*LSLLCRTRGLYLSC
Trigger: GCATGATAAGTAAAGGCCCCTAGTCCTGCACAGGAGGCTGAGGCAGGAGAATTGTTTAGTCCTGGAATAGATAGTAAAAGCCTGTCTCAG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000061350.13
ENSMUST00000100013.9
3UTR TCA 90 bp GTTCTTTGCTTAACTAGACTGCAGTATGGGAGCCATGGAATACTATaGAGGATATCTCAGACAGCAAGCAGTGGAGCGCCTTACTGTCTA +
Preference number: 1 (lower is better)
Translates to: VLCLTRLQYGSHGIL*RISQTASSGAPYCL
Trigger: TAGACAGTAAGGCGCTCCACTGCTTGCTGTCTGAGATATCCTTCATAGTATTCCATGGCTCCCATACTGCAGTCTAGTTAAGCAAAGAAC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000061350.13
ENSMUST00000100013.9
3UTR CCA 90 bp GCCACACTCGCCCAAGCACTGTCTGCAGCATTCCCTTACAGCAGTTaGTGCTACAAGATAGAAACCGGTTACCATTATTTATTTATATGT +
Preference number: 1 (lower is better)
Translates to: ATLAQALSAAFPYSS*CYKIETGYHYLFIC
Trigger: ACATATAAATAAATAATGGTAACCGGTTTCTATCTTGTAGCACCAACTGCTGTAAGGGAATGCTGCAGACAGTGCTTGGGCGAGTGTGGC
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000061350.13
ENSMUST00000100013.9
3UTR GCA 90 bp TACAGAAGACTCAGTCTACCTATGGCACTAAGCAGGACCCATGTCTaGATTCACAGACATTCTTCGAACAATATTCTCAACTGGAATAAC +
Preference number: 1 (lower is better)
Translates to: YRRLSLPMALSRTHV*IHRHSSNNILNWNN
Trigger: GTTATTCCAGTTGAGAATATTGTTCGAAGAATGTCTGTGAATGCAGACATGGGTCCTGCTTAGTGCCATAGGTAGACTGAGTCTTCTGTA
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000061350.13
ENSMUST00000100013.9
3UTR GCA 90 bp ACACTCGCCCAAGCACTGTCTGCAGCATTCCCTTACAGCAGTTGGTaGTACAAGATAGAAACCGGTTACCATTATTTATTTATATGTAAG +
Preference number: 1 (lower is better)
Translates to: TLAQALSAAFPYSSW*YKIETGYHYLFICK
Trigger: CTTACATATAAATAAATAATGGTAACCGGTTTCTATCTTGTAGCACCAACTGCTGTAAGGGAATGCTGCAGACAGTGCTTGGGCGAGTGT
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000061350.13
ENSMUST00000100013.9
3UTR GCA 90 bp CTTCGTACAAATGCTTTCTCTCACCTACATAAAACCTTGTTCCTTTaGAAACAATATGGACAGATGAGATATAAACCCTTATCAACTCTA +
Preference number: 1 (lower is better)
Translates to: LRTNAFSHLHKTLFL*KQYGQMRYKPLSTL
Trigger: TAGAGTTGATAAGGGTTTATATCTCATCTGTCCATATTGTTTGCAAAGGAACAAGGTTTTATGTAGGTGAGAGAAAGCATTTGTACGAAG
36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000061350.13
ENSMUST00000100013.9
3UTR-3UTR GCA 90 bp GACAGGCTTTTACTATCTATTCCAGGACTAAACAATTCTCCTGCCTCAGCCTCCAAATCCGCCTGCCCCTaGCTCCCTCCCGAATGCTGG +
Preference number: 2 (lower is better)
Translates to: DRLLLSIPGLNNSPASASKSACP*LPPECW
Trigger: CCAGCATTCGGGAGGGAGGCAGGGGCAGGCGGATTT...GGAGGCTGAGGCAGGAGAATTGTTTAGTCCTGGAATAGATAGTAAAAGCCTGTC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000061350.13
ENSMUST00000100013.9
3UTR-3UTR GCA 90 bp ACACTCGCCCAAGCACTGTCTGCAGCATTCCCTTACAGCAGTTGGTGCTACAAGAGAAAAGCTCAACAGTaGATGCTGCTGAGCACTGCT +
Preference number: 2 (lower is better)
Translates to: TLAQALSAAFPYSSWCYKRKAQQ*MLLSTA
Trigger: AGCAGTGCTCAGCAGCATGCACTGTTGAGCTTTTCT...CTTGTAGCACCAACTGCTGTAAGGGAATGCTGCAGACAGTGCTTGGGCGAGTGT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000061350.13
ENSMUST00000100013.9
3UTR-3UTR TCA 90 bp ACACTCGCCCAAGCACTGTCTGCAGCATTCCCTTACAGCAGTTGGTGCTACAAGGAGAGGGATATAAACTaGACTAGTGCCATTCTGACA +
Preference number: 2 (lower is better)
Translates to: TLAQALSAAFPYSSWCYKERDIN*TSAILT
Trigger: TGTCAGAATGGCACTAGTTCAGTTTATATCCCTCTC...CTTGTAGCACCAACTGCTGTAAGGGAATGCTGCAGACAGTGCTTGGGCGAGTGT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000061350.13
ENSMUST00000100013.9
3UTR-3UTR GCA 90 bp ATGACTTACAGAAGACTCAGTCTACCTATGGCACTAAGCAGGACCCATGTCTGCAGAAAAGCTCAACAGTaGATGCTGCTGAGCACTGCT +
Preference number: 2 (lower is better)
Translates to: MTYRRLSLPMALSRTHVCRKAQQ*MLLSTA
Trigger: AGCAGTGCTCAGCAGCATGCACTGTTGAGCTTTTCT...GCAGACATGGGTCCTGCTTAGTGCCATAGGTAGACTGAGTCTTCTGTAAGTCAT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000061350.13
ENSMUST00000100013.9
3UTR-3UTR GCA 90 bp ATGACTTACAGAAGACTCAGTCTACCTATGGCACTAAGCAGGACCCATGTCTGCACCCCGATCCTTCTCTaGTTGTGTATTCTGAGACAG +
Preference number: 2 (lower is better)
Translates to: MTYRRLSLPMALSRTHVCTPILL*LCILRQ
Trigger: CTGTCTCAGAATACACAAGCAGAGAAGGATCGGGGT...GCAGACATGGGTCCTGCTTAGTGCCATAGGTAGACTGAGTCTTCTGTAAGTCAT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000061350.13
ENSMUST00000100013.9
3UTR-3UTR TCA 90 bp ACACTCGCCCAAGCACTGTCTGCAGCATTCCCTTACAGCAGTTGGTGCTACAAGGAAATGGAAATTACCTaGGTTGCTCTATCAACAACA +
Preference number: 2 (lower is better)
Translates to: TLAQALSAAFPYSSWCYKEMEIT*VALSTT
Trigger: TGTTGTTGATAGAGCAACTCAGGTAATTTCCATTTC...CTTGTAGCACCAACTGCTGTAAGGGAATGCTGCAGACAGTGCTTGGGCGAGTGT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000061350.13
ENSMUST00000100013.9
3UTR-3UTR TCA 90 bp CACTCGCCCAAGCACTGTCTGCAGCATTCCCTTACAGCAGTTGGTGCTACAAGAGAAATGGAAATTACCTaGGTTGCTCTATCAACAACA +
Preference number: 2 (lower is better)
Translates to: HSPKHCLQHSLTAVGATREMEIT*VALSTT
Trigger: TGTTGTTGATAGAGCAACTCAGGTAATTTCCATTTC...TCTTGTAGCACCAACTGCTGTAAGGGAATGCTGCAGACAGTGCTTGGGCGAGTG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000061350.13
ENSMUST00000100013.9
3UTR-3UTR TCA 90 bp CACTCGCCCAAGCACTGTCTGCAGCATTCCCTTACAGCAGTTGGTGCTACAAGAGATGTTAAGTACAACTaGTATTGGGTTTCTAAGCTG +
Preference number: 2 (lower is better)
Translates to: HSPKHCLQHSLTAVGATRDVKYN*YWVSKL
Trigger: CAGCTTAGAAACCCAATATCAGTTGTACTTAACATC...TCTTGTAGCACCAACTGCTGTAAGGGAATGCTGCAGACAGTGCTTGGGCGAGTG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000061350.13
ENSMUST00000100013.9
3UTR-3UTR GCA 90 bp CAGCTCAAGAGGTCTAAGATGCATAGCTTCATAGAATCATTCACGGGACAATTGACTAAACAATTCTCCTaGCTCAGCCTCCTGTGCAGG +
Preference number: 2 (lower is better)
Translates to: QLKRSKMHSFIESFTGQLTKQFS*LSLLCR
Trigger: CCTGCACAGGAGGCTGAGGCAGGAGAATTGTTTAGT...CAATTGTCCCGTGAATGATTCTATGAAGCTATGCATCTTAGACCTCTTGAGCTG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000061350.13
ENSMUST00000100013.9
3UTR-3UTR CCA 90 bp CACTCGCCCAAGCACTGTCTGCAGCATTCCCTTACAGCAGTTGGTGCTACAAGATCAACCTATTTTCACTaGAGGCTAATCACAATTAAC +
Preference number: 2 (lower is better)
Translates to: HSPKHCLQHSLTAVGATRSTYFH*RLITIN
Trigger: GTTAATTGTGATTAGCCTCCAGTGAAAATAGGTTGA...TCTTGTAGCACCAACTGCTGTAAGGGAATGCTGCAGACAGTGCTTGGGCGAGTG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000061350.13
ENSMUST00000100013.9
3UTR-3UTR TCA 90 bp CAGCTCAAGAGGTCTAAGATGCATAGCTTCATAGAATCATTCACGGGACAATTGTTACTGTCTAGAAAGTaGCACCCAGGCAGGAGATAC +
Preference number: 2 (lower is better)
Translates to: QLKRSKMHSFIESFTGQLLLSRK*HPGRRY
Trigger: GTATCTCCTGCCTGGGTGTCACTTTCTAGACAGTAA...CAATTGTCCCGTGAATGATTCTATGAAGCTATGCATCTTAGACCTCTTGAGCTG
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000061350.13
ENSMUST00000100013.9
3UTR CAA 90 bp GAATGGGATCTACTGCCAAGAGACATAACCCCGATCCTTCTCTGCTaGTGTATTCTGAGACAGGCTTTTACTATCTATTCCAGGACTAAA +
Preference number: 2 (lower is better)
Translates to: EWDLLPRDITPILLC*CILRQAFTIYSRTK
Trigger: TTTAGTCCTGGAATAGATAGTAAAAGCCTGTCTCAGAATACACAAGCAGAGAAGGATCGGGGTTATGTCTCTTGGCAGTAGATCCCATTC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000061350.13
ENSMUST00000100013.9
3UTR-3UTR CCA 90 bp ATGACTTACAGAAGACTCAGTCTACCTATGGCACTAAGCAGGACCCATGTCTGCTTTGGGAGAAAACACTaGATCAAAACAGGCTTTCAA +
Preference number: 2 (lower is better)
Translates to: MTYRRLSLPMALSRTHVCFGRKH*IKTGFQ
Trigger: TTGAAAGCCTGTTTTGATCCAGTGTTTTCTCCCAAA...GCAGACATGGGTCCTGCTTAGTGCCATAGGTAGACTGAGTCTTCTGTAAGTCAT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000061350.13
ENSMUST00000100013.9
3UTR-3UTR TCA 90 bp TCACTAGTGGCAACAGCAGTAATAGTGATCCTGAGACACATTTACTTTTTCTACTTACTGTCTAGAAAGTaGCACCCAGGCAGGAGATAC +
Preference number: 2 (lower is better)
Translates to: SLVATAVIVILRHIYFFYLLSRK*HPGRRY
Trigger: GTATCTCCTGCCTGGGTGTCACTTTCTAGACAGTAA...GTAGAAAAAGTAAATGTGTCTCAGGATCACTATTACTGCTGTTGCCACTAGTGA
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000061350.13
ENSMUST00000100013.9
3UTR-3UTR CCA 90 bp GACAGGCTTTTACTATCTATTCCAGGACTAAACAATTCTCCTGCCTCAGCCTCCTTTGGGAGAAAACACTaGATCAAAACAGGCTTTCAA +
Preference number: 2 (lower is better)
Translates to: DRLLLSIPGLNNSPASASFGRKH*IKTGFQ
Trigger: TTGAAAGCCTGTTTTGATCCAGTGTTTTCTCCCAAA...GGAGGCTGAGGCAGGAGAATTGTTTAGTCCTGGAATAGATAGTAAAAGCCTGTC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000061350.13
ENSMUST00000100013.9
3UTR CAA 90 bp TGCCAAACTGCCAGGTCCTACCTAGGAAAGCATTGTGAAAGTTCCTaGAGAACTGAACAGAATCAGATAAAACACAAATGTGTAAATGCT +
Preference number: 2 (lower is better)
Translates to: CQTARSYLGKHCESS*RTEQNQIKHKCVNA
Trigger: AGCATTTACACATTTGTGTTTTATCTGATTCTGTTCAGTTCTCAAGGAACTTTCACAATGCTTTCCTAGGTAGGACCTGGCAGTTTGGCA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000061350.13
ENSMUST00000100013.9
3UTR-3UTR TCA 90 bp TCACTAGTGGCAACAGCAGTAATAGTGATCCTGAGACACATTTACTTTTTCTACATTGTGAAAGTTCCTTaGGAACTGAACAGAATCAGA +
Preference number: 2 (lower is better)
Translates to: SLVATAVIVILRHIYFFYIVKVP*ELNRIR
Trigger: TCTGATTCTGTTCAGTTCTCAAGGAACTTTCACAAT...GTAGAAAAAGTAAATGTGTCTCAGGATCACTATTACTGCTGTTGCCACTAGTGA
38% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000061350.13
ENSMUST00000100013.9
3UTR-3UTR GCA 90 bp GAAAGAAACACATTATTTACCATGCCTTTGAAACTGTGCAGTACTTTCATCAACGGAAATTACCTGAGTTaGTCTATCAACAACACACAA +
Preference number: 2 (lower is better)
Translates to: ERNTLFTMPLKLCSTFINGNYLS*SINNTQ
Trigger: TTGTGTGTTGTTGATAGAGCAACTCAGGTAATTTCC...GTTGATGAAAGTACTGCACAGTTTCAAAGGCATGGTAAATAATGTGTTTCTTTC
36% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000061350.13
ENSMUST00000100013.9
3UTR-3UTR GCA 90 bp GAAAGAAACACATTATTTACCATGCCTTTGAAACTGTGCAGTACTTTCATCAACCTTATCATGCCTGGCTaGTCAGAAATAAACCTTTTT +
Preference number: 2 (lower is better)
Translates to: ERNTLFTMPLKLCSTFINLIMPG*SEINLF
Trigger: AAAAAGGTTTATTTCTGAGCAGCCAGGCATGATAAG...GTTGATGAAAGTACTGCACAGTTTCAAAGGCATGGTAAATAATGTGTTTCTTTC
36% GC, longest homopolymer 5 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000061350.13
ENSMUST00000100013.9
3UTR-3UTR CCA 90 bp GAAAGAAACACATTATTTACCATGCCTTTGAAACTGTGCAGTACTTTCATCAACTCAACCTATTTTCACTaGAGGCTAATCACAATTAAC +
Preference number: 2 (lower is better)
Translates to: ERNTLFTMPLKLCSTFINSTYFH*RLITIN
Trigger: GTTAATTGTGATTAGCCTCCAGTGAAAATAGGTTGA...GTTGATGAAAGTACTGCACAGTTTCAAAGGCATGGTAAATAATGTGTTTCTTTC
34% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000061350.13
ENSMUST00000100013.9
3UTR GCA 72 bp CAGGCTTGTTGGCGCCACACTCGCCCAAGCACTGTCTaGAGCATTCCCTTACAGCAGTTGGTGCTACAAGAT +
Preference number: 3 (lower is better)
Translates to: QACWRHTRPSTV*SIPLQQLVLQD
Trigger: ATCTTGTAGCACCAACTGCTGTAAGGGAATGCTGCAGACAGTGCTTGGGCGAGTGTGGCGCCAACAAGCCTG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000061350.13
ENSMUST00000100013.9
3UTR GCA 72 bp TCCAGGACTAAACAATTCTCCTGCCTCAGCCTCCTGTaGAGGACTAGGGGCCTTTACTTATCATGCCTGGCT +
Preference number: 3 (lower is better)
Translates to: SRTKQFSCLSLL*RTRGLYLSCLA
Trigger: AGCCAGGCATGATAAGTAAAGGCCCCTAGTCCTGCACAGGAGGCTGAGGCAGGAGAATTGTTTAGTCCTGGA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000061350.13
ENSMUST00000100013.9
3UTR CCA 72 bp TTGCTTAAATGGAAAGCGTTTGAATCTCAGGCTTGTTaGCGCCACACTCGCCCAAGCACTGTCTGCAGCATT +
Preference number: 3 (lower is better)
Translates to: LLKWKAFESQAC*RHTRPSTVCSI
Trigger: AATGCTGCAGACAGTGCTTGGGCGAGTGTGGCGCCAACAAGCCTGAGATTCAAACGCTTTCCATTTAAGCAA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000061350.13
ENSMUST00000100013.9
3UTR GCA 72 bp GCTTTTACTATCTATTCCAGGACTAAACAATTCTCCTaGCTCAGCCTCCTGTGCAGGACTAGGGGCCTTTAC +
Preference number: 3 (lower is better)
Translates to: AFTIYSRTKQFS*LSLLCRTRGLY
Trigger: GTAAAGGCCCCTAGTCCTGCACAGGAGGCTGAGGCAGGAGAATTGTTTAGTCCTGGAATAGATAGTAAAAGC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000061350.13
ENSMUST00000100013.9
3UTR TCA 72 bp TTAACTAGACTGCAGTATGGGAGCCATGGAATACTATaGAGGATATCTCAGACAGCAAGCAGTGGAGCGCCT +
Preference number: 3 (lower is better)
Translates to: LTRLQYGSHGIL*RISQTASSGAP
Trigger: AGGCGCTCCACTGCTTGCTGTCTGAGATATCCTTCATAGTATTCCATGGCTCCCATACTGCAGTCTAGTTAA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000061350.13
ENSMUST00000100013.9
3UTR CCA 72 bp GCCCAAGCACTGTCTGCAGCATTCCCTTACAGCAGTTaGTGCTACAAGATAGAAACCGGTTACCATTATTTA +
Preference number: 3 (lower is better)
Translates to: AQALSAAFPYSS*CYKIETGYHYL
Trigger: TAAATAATGGTAACCGGTTTCTATCTTGTAGCACCAACTGCTGTAAGGGAATGCTGCAGACAGTGCTTGGGC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000061350.13
ENSMUST00000100013.9
3UTR-3UTR CAA 90 bp ATGACTTACAGAAGACTCAGTCTACCTATGGCACTAAGCAGGACCCATGTCTGCTGGAAATTACCTGAGTaGCTCTATCAACAACACACA +
Preference number: 3 (lower is better)
Translates to: MTYRRLSLPMALSRTHVCWKLPE*LYQQHT
Trigger: TGTGTGTTGTTGATAGAGCAACTCAGGTAATTTCCA...GCAGACATGGGTCCTGCTTAGTGCCATAGGTAGACTGAGTCTTCTGTAAGTCAT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000061350.13
ENSMUST00000100013.9
3UTR GCA 72 bp CTCAGTCTACCTATGGCACTAAGCAGGACCCATGTCTaGATTCACAGACATTCTTCGAACAATATTCTCAAC +
Preference number: 3 (lower is better)
Translates to: LSLPMALSRTHV*IHRHSSNNILN
Trigger: GTTGAGAATATTGTTCGAAGAATGTCTGTGAATGCAGACATGGGTCCTGCTTAGTGCCATAGGTAGACTGAG
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000061350.13
ENSMUST00000100013.9
3UTR-3UTR CAA 90 bp TCACTAGTGGCAACAGCAGTAATAGTGATCCTGAGACACATTTACTTTTTCTACCCGATCCTTCTCTGCTaGTGTATTCTGAGACAGGCT +
Preference number: 3 (lower is better)
Translates to: SLVATAVIVILRHIYFFYPILLC*CILRQA
Trigger: AGCCTGTCTCAGAATACACAAGCAGAGAAGGATCGG...GTAGAAAAAGTAAATGTGTCTCAGGATCACTATTACTGCTGTTGCCACTAGTGA
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000061350.13
ENSMUST00000100013.9
3UTR GCA 72 bp GATCTACTGCCAAGAGACATAACCCCGATCCTTCTCTaGTTGTGTATTCTGAGACAGGCTTTTACTATCTAT +
Preference number: 3 (lower is better)
Translates to: DLLPRDITPILL*LCILRQAFTIY
Trigger: ATAGATAGTAAAAGCCTGTCTCAGAATACACAAGCAGAGAAGGATCGGGGTTATGTCTCTTGGCAGTAGATC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000061350.13
ENSMUST00000100013.9
3UTR GCA 72 bp CAAGCACTGTCTGCAGCATTCCCTTACAGCAGTTGGTaGTACAAGATAGAAACCGGTTACCATTATTTATTT +
Preference number: 3 (lower is better)
Translates to: QALSAAFPYSSW*YKIETGYHYLF
Trigger: AAATAAATAATGGTAACCGGTTTCTATCTTGTAGCACCAACTGCTGTAAGGGAATGCTGCAGACAGTGCTTG
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000061350.13
ENSMUST00000100013.9
3UTR-3UTR CAA 90 bp TCACTAGTGGCAACAGCAGTAATAGTGATCCTGAGACACATTTACTTTTTCTACCATTGTGAAAGTTCCTaGAGAACTGAACAGAATCAG +
Preference number: 3 (lower is better)
Translates to: SLVATAVIVILRHIYFFYHCESS*RTEQNQ
Trigger: CTGATTCTGTTCAGTTCTCAAGGAACTTTCACAATG...GTAGAAAAAGTAAATGTGTCTCAGGATCACTATTACTGCTGTTGCCACTAGTGA
39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000061350.13
ENSMUST00000100013.9
3UTR GCA 72 bp AATGCTTTCTCTCACCTACATAAAACCTTGTTCCTTTaGAAACAATATGGACAGATGAGATATAAACCCTTA +
Preference number: 3 (lower is better)
Translates to: NAFSHLHKTLFL*KQYGQMRYKPL
Trigger: TAAGGGTTTATATCTCATCTGTCCATATTGTTTGCAAAGGAACAAGGTTTTATGTAGGTGAGAGAAAGCATT
35% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000061350.13
ENSMUST00000100013.9
CDS-3UTR TCA 90 bp AGCGTCAGAAAAGCTCAACAGTGCATGCTGCTGAGCACTGCTACTAGCACAGAGAGGCAACCGCCACTGTaGGGTACTGGAAACTGGAGA +
Preference number: 4 (lower is better)
Translates to: SVRKAQQCMLLSTATSTERQPPL*GTGNWR
Trigger: TCTCCAGTTTCCAGTACCTCACAGTGGCGGTTGCCT...CTCTGTGCTAGTAGCAGTGCTCAGCAGCATGCACTGTTGAGCTTTTCTGACGCT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000061350.13
ENSMUST00000100013.9
ENSMUST00000229503.2
CDS-3UTR CCA 90 bp GTCAGAAAAGCTCAACAGTGCATGCTGCTGAGCACTGCTACTAGCACAGAGAGCTCATCCCACAGTCTCTaGCCACAGAGACAGCCGTCA +
Preference number: 4 (lower is better)
Translates to: VRKAQQCMLLSTATSTESSSHSL*PQRQPS
Trigger: TGACGGCTGTCTCTGTGGCCAGAGACTGTGGGATGA...GCTCTCTGTGCTAGTAGCAGTGCTCAGCAGCATGCACTGTTGAGCTTTTCTGAC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000061350.13
ENSMUST00000100013.9
CDS-3UTR TCA 90 bp CACTCGCCCAAGCACTGTCTGCAGCATTCCCTTACAGCAGTTGGTGCTACAAGAACTCTCACGGTACTGTaGGTTGCCACCATGTCATGT +
Preference number: 4 (lower is better)
Translates to: HSPKHCLQHSLTAVGATRTLTVL*VATMSC
Trigger: ACATGACATGGTGGCAACTCACAGTACCGTGAGAGT...TCTTGTAGCACCAACTGCTGTAAGGGAATGCTGCAGACAGTGCTTGGGCGAGTG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000061350.13
ENSMUST00000100013.9
CDS-3UTR TCA 90 bp GTCAGAAAAGCTCAACAGTGCATGCTGCTGAGCACTGCTACTAGCACAGAGAGCGTGGCTGTGTGGTGCTaGAACGACACTCTCCTTGTT +
Preference number: 4 (lower is better)
Translates to: VRKAQQCMLLSTATSTESVAVWC*NDTLLV
Trigger: AACAAGGAGAGTGTCGTTTCAGCACCACACAGCCAC...GCTCTCTGTGCTAGTAGCAGTGCTCAGCAGCATGCACTGTTGAGCTTTTCTGAC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000100013.9
ENSMUST00000229503.2
CDS-3UTR GCA 90 bp ACACTCGCCCAAGCACTGTCTGCAGCATTCCCTTACAGCAGTTGGTGCTACAAGCCACAAAACAAAGTGTaGCGCTTGTGTGTCTCTGGG +
Preference number: 4 (lower is better)
Translates to: TLAQALSAAFPYSSWCYKPQNKV*RLCVSG
Trigger: CCCAGAGACACACAAGCGGCACACTTTGTTTTGTGG...CTTGTAGCACCAACTGCTGTAAGGGAATGCTGCAGACAGTGCTTGGGCGAGTGT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000061350.13
ENSMUST00000100013.9
CDS-3UTR GCA 90 bp CACTCGCCCAAGCACTGTCTGCAGCATTCCCTTACAGCAGTTGGTGCTACAAGAGGAAATGCCACCATGTaGCCTCTTCAAAGCACCACA +
Preference number: 4 (lower is better)
Translates to: HSPKHCLQHSLTAVGATRGNATM*PLQSTT
Trigger: TGTGGTGCTTTGAAGAGGGCACATGGTGGCATTTCC...TCTTGTAGCACCAACTGCTGTAAGGGAATGCTGCAGACAGTGCTTGGGCGAGTG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000061350.13
ENSMUST00000100013.9
CDS-3UTR TCA 90 bp ACACTCGCCCAAGCACTGTCTGCAGCATTCCCTTACAGCAGTTGGTGCTACAAGATGCCAGGTCAGCTTTaGCTCCAATTTTCTGTGTGC +
Preference number: 4 (lower is better)
Translates to: TLAQALSAAFPYSSWCYKMPGQL*LQFSVC
Trigger: GCACACAGAAAATTGGAGTCAAAGCTGACCTGGCAT...CTTGTAGCACCAACTGCTGTAAGGGAATGCTGCAGACAGTGCTTGGGCGAGTGT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000061350.13
ENSMUST00000100013.9
CDS-3UTR TCA 90 bp AGCGTCAGAAAAGCTCAACAGTGCATGCTGCTGAGCACTGCTACTAGCACAGAGACGGAGATCACAATCTaGGACAAGACGGAGAAGAGG +
Preference number: 4 (lower is better)
Translates to: SVRKAQQCMLLSTATSTETEITI*DKTEKR
Trigger: CCTCTTCTCCGTCTTGTCTCAGATTGTGATCTCCGT...CTCTGTGCTAGTAGCAGTGCTCAGCAGCATGCACTGTTGAGCTTTTCTGACGCT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000061350.13
ENSMUST00000100013.9
ENSMUST00000229503.2
CDS-3UTR GCA 90 bp CACAGCGTCAGAAAAGCTCAACAGTGCATGCTGCTGAGCACTGCTACTAGCACAAGCACCACAATCATTTaGACCATCACCGCACATCCC +
Preference number: 4 (lower is better)
Translates to: HSVRKAQQCMLLSTATSTSTTII*TITAHP
Trigger: GGGATGTGCGGTGATGGTGCAAATGATTGTGGTGCT...TGTGCTAGTAGCAGTGCTCAGCAGCATGCACTGTTGAGCTTTTCTGACGCTGTG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000061350.13
ENSMUST00000100013.9
CDS-3UTR GCA 90 bp ACACTCGCCCAAGCACTGTCTGCAGCATTCCCTTACAGCAGTTGGTGCTACAAGGCTCAGATAAGGAAATaGCACCATGTGCCCTCTTCA +
Preference number: 4 (lower is better)
Translates to: TLAQALSAAFPYSSWCYKAQIRK*HHVPSS
Trigger: TGAAGAGGGCACATGGTGGCATTTCCTTATCTGAGC...CTTGTAGCACCAACTGCTGTAAGGGAATGCTGCAGACAGTGCTTGGGCGAGTGT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000061350.13
ENSMUST00000100013.9
CDS-3UTR TCA 90 bp GTCAGAAAAGCTCAACAGTGCATGCTGCTGAGCACTGCTACTAGCACAGAGAGCATGCCAGGTCAGCTTTaGCTCCAATTTTCTGTGTGC +
Preference number: 4 (lower is better)
Translates to: VRKAQQCMLLSTATSTESMPGQL*LQFSVC
Trigger: GCACACAGAAAATTGGAGTCAAAGCTGACCTGGCAT...GCTCTCTGTGCTAGTAGCAGTGCTCAGCAGCATGCACTGTTGAGCTTTTCTGAC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000061350.13
ENSMUST00000100013.9
CDS-3UTR TCA 90 bp ACACTCGCCCAAGCACTGTCTGCAGCATTCCCTTACAGCAGTTGGTGCTACAAGGAATGGTTTTCCTTTTaGAAAGGCAACCGCCACTGT +
Preference number: 4 (lower is better)
Translates to: TLAQALSAAFPYSSWCYKEWFSF*KGNRHC
Trigger: ACAGTGGCGGTTGCCTTTTCAAAAGGAAAACCATTC...CTTGTAGCACCAACTGCTGTAAGGGAATGCTGCAGACAGTGCTTGGGCGAGTGT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000061350.13
ENSMUST00000100013.9
CDS-3UTR GCA 90 bp AGCGTCAGAAAAGCTCAACAGTGCATGCTGCTGAGCACTGCTACTAGCACAGAGTGTCTTCTGATCCGGTaGCATTCGAGCAAACACAGT +
Preference number: 4 (lower is better)
Translates to: SVRKAQQCMLLSTATSTECLLIR*HSSKHS
Trigger: ACTGTGTTTGCTCGAATGGCACCGGATCAGAAGACA...CTCTGTGCTAGTAGCAGTGCTCAGCAGCATGCACTGTTGAGCTTTTCTGACGCT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000061350.13
ENSMUST00000100013.9
CDS-3UTR CCA 90 bp CACAGCGTCAGAAAAGCTCAACAGTGCATGCTGCTGAGCACTGCTACTAGCACACTCCTACAAAAACCATaGCAAGCTTCCAGCGGCATA +
Preference number: 4 (lower is better)
Translates to: HSVRKAQQCMLLSTATSTLLQKP*QASSGI
Trigger: TATGCCGCTGGAAGCTTGCCATGGTTTTTGTAGGAG...TGTGCTAGTAGCAGTGCTCAGCAGCATGCACTGTTGAGCTTTTCTGACGCTGTG
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000061350.13
ENSMUST00000100013.9
CDS-3UTR CCA 90 bp AGCGTCAGAAAAGCTCAACAGTGCATGCTGCTGAGCACTGCTACTAGCACAGAGCTCCTACAAAAACCATaGCAAGCTTCCAGCGGCATA +
Preference number: 4 (lower is better)
Translates to: SVRKAQQCMLLSTATSTELLQKP*QASSGI
Trigger: TATGCCGCTGGAAGCTTGCCATGGTTTTTGTAGGAG...CTCTGTGCTAGTAGCAGTGCTCAGCAGCATGCACTGTTGAGCTTTTCTGACGCT
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000061350.13
ENSMUST00000100013.9
CDS-3UTR CCA 90 bp GTCAGAAAAGCTCAACAGTGCATGCTGCTGAGCACTGCTACTAGCACAGAGAGCTTCCCTGATAAGGTTTaGCACACAGGAGATACTGGG +
Preference number: 4 (lower is better)
Translates to: VRKAQQCMLLSTATSTESFPDKV*HTGDTG
Trigger: CCCAGTATCTCCTGTGTGCCAAACCTTATCAGGGAA...GCTCTCTGTGCTAGTAGCAGTGCTCAGCAGCATGCACTGTTGAGCTTTTCTGAC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000061350.13
ENSMUST00000100013.9
CDS-3UTR CCA 90 bp GTCAGAAAAGCTCAACAGTGCATGCTGCTGAGCACTGCTACTAGCACAGAGAGCCCTTTACTACAGCTTTaGCTTCCGTCGTTGTCTGAG +
Preference number: 4 (lower is better)
Translates to: VRKAQQCMLLSTATSTESPLLQL*LPSLSE
Trigger: CTCAGACAACGACGGAAGCCAAAGCTGTAGTAAAGG...GCTCTCTGTGCTAGTAGCAGTGCTCAGCAGCATGCACTGTTGAGCTTTTCTGAC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000061350.13
ENSMUST00000100013.9
ENSMUST00000229503.2
CDS-3UTR TCA 90 bp CACAGCGTCAGAAAAGCTCAACAGTGCATGCTGCTGAGCACTGCTACTAGCACAATTCATCAGTTGTCCTaGGAAGCACCACTTCACAGT +
Preference number: 4 (lower is better)
Translates to: HSVRKAQQCMLLSTATSTIHQLS*EAPLHS
Trigger: ACTGTGAAGTGGTGCTTCTCAGGACAACTGATGAAT...TGTGCTAGTAGCAGTGCTCAGCAGCATGCACTGTTGAGCTTTTCTGACGCTGTG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000061350.13
ENSMUST00000100013.9
CDS-3UTR TCA 90 bp GTCAGAAAAGCTCAACAGTGCATGCTGCTGAGCACTGCTACTAGCACAGAGAGCATTCATCAGTTGTCCTaGGAAGCACCACTTCACAGT +
Preference number: 4 (lower is better)
Translates to: VRKAQQCMLLSTATSTESIHQLS*EAPLHS
Trigger: ACTGTGAAGTGGTGCTTCTCAGGACAACTGATGAAT...GCTCTCTGTGCTAGTAGCAGTGCTCAGCAGCATGCACTGTTGAGCTTTTCTGAC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000061350.13
ENSMUST00000100013.9
CDS-3UTR TCA 90 bp CACTCGCCCAAGCACTGTCTGCAGCATTCCCTTACAGCAGTTGGTGCTACAAGACGCATCTGTTGTGACTaGCTCTGTGAGTATTTATTC +
Preference number: 4 (lower is better)
Translates to: HSPKHCLQHSLTAVGATRRICCD*LCEYLF
Trigger: GAATAAATACTCACAGAGTCAGTCACAACAGATGCG...TCTTGTAGCACCAACTGCTGTAAGGGAATGCTGCAGACAGTGCTTGGGCGAGTG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000061350.13
ENSMUST00000100013.9
CDS-3UTR TCA 90 bp AGCGTCAGAAAAGCTCAACAGTGCATGCTGCTGAGCACTGCTACTAGCACAGAGCTGCATCACAAGGCATaGCTGTCCCATTTAATGGAA +
Preference number: 4 (lower is better)
Translates to: SVRKAQQCMLLSTATSTELHHKA*LSHLME
Trigger: TTCCATTAAATGGGACAGTCATGCCTTGTGATGCAG...CTCTGTGCTAGTAGCAGTGCTCAGCAGCATGCACTGTTGAGCTTTTCTGACGCT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000061350.13
ENSMUST00000100013.9
CDS-3UTR TCA 90 bp GTCAGAAAAGCTCAACAGTGCATGCTGCTGAGCACTGCTACTAGCACAGAGAGCCTGCATCACAAGGCATaGCTGTCCCATTTAATGGAA +
Preference number: 4 (lower is better)
Translates to: VRKAQQCMLLSTATSTESLHHKA*LSHLME
Trigger: TTCCATTAAATGGGACAGTCATGCCTTGTGATGCAG...GCTCTCTGTGCTAGTAGCAGTGCTCAGCAGCATGCACTGTTGAGCTTTTCTGAC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000061350.13
ENSMUST00000100013.9
CDS-3UTR TCA 90 bp CACAGCGTCAGAAAAGCTCAACAGTGCATGCTGCTGAGCACTGCTACTAGCACAGAATGGTTTTCCTTTTaGAAAGGCAACCGCCACTGT +
Preference number: 4 (lower is better)
Translates to: HSVRKAQQCMLLSTATSTEWFSF*KGNRHC
Trigger: ACAGTGGCGGTTGCCTTTTCAAAAGGAAAACCATTC...TGTGCTAGTAGCAGTGCTCAGCAGCATGCACTGTTGAGCTTTTCTGACGCTGTG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000061350.13
ENSMUST00000100013.9
ENSMUST00000229503.2
CDS-3UTR TCA 90 bp GACAGGCTTTTACTATCTATTCCAGGACTAAACAATTCTCCTGCCTCAGCCTCCGTGGCTGTGTGGTGCTaGAACGACACTCTCCTTGTT +
Preference number: 4 (lower is better)
Translates to: DRLLLSIPGLNNSPASASVAVWC*NDTLLV
Trigger: AACAAGGAGAGTGTCGTTTCAGCACCACACAGCCAC...GGAGGCTGAGGCAGGAGAATTGTTTAGTCCTGGAATAGATAGTAAAAGCCTGTC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000100013.9
CDS-3UTR GCA 90 bp CACTCGCCCAAGCACTGTCTGCAGCATTCCCTTACAGCAGTTGGTGCTACAAGATTCACAGTCTTTAACTaGAGCTCTAACACATGTGGC +
Preference number: 4 (lower is better)
Translates to: HSPKHCLQHSLTAVGATRFTVFN*SSNTCG
Trigger: GCCACATGTGTTAGAGCTGCAGTTAAAGACTGTGAA...TCTTGTAGCACCAACTGCTGTAAGGGAATGCTGCAGACAGTGCTTGGGCGAGTG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000061350.13
ENSMUST00000100013.9
CDS-3UTR GCA 90 bp AGCGTCAGAAAAGCTCAACAGTGCATGCTGCTGAGCACTGCTACTAGCACAGAGCCCCTGTGTCAGTCCTaGACTATGCTTTTCATAAAG +
Preference number: 4 (lower is better)
Translates to: SVRKAQQCMLLSTATSTEPLCQS*TMLFIK
Trigger: CTTTATGAAAAGCATAGTGCAGGACTGACACAGGGG...CTCTGTGCTAGTAGCAGTGCTCAGCAGCATGCACTGTTGAGCTTTTCTGACGCT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000061350.13
ENSMUST00000100013.9
CDS-3UTR GCA 90 bp CACTCGCCCAAGCACTGTCTGCAGCATTCCCTTACAGCAGTTGGTGCTACAAGAGATCCGGTTATGAAGTaGTGTTTCTTCTTCAGTTGC +
Preference number: 4 (lower is better)
Translates to: HSPKHCLQHSLTAVGATRDPVMK*CFFFSC
Trigger: GCAACTGAAGAAGAAACAGCACTTCATAACCGGATC...TCTTGTAGCACCAACTGCTGTAAGGGAATGCTGCAGACAGTGCTTGGGCGAGTG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000061350.13
ENSMUST00000100013.9
CDS-3UTR TCA 90 bp CACAGCGTCAGAAAAGCTCAACAGTGCATGCTGCTGAGCACTGCTACTAGCACACGCATCTGTTGTGACTaGCTCTGTGAGTATTTATTC +
Preference number: 4 (lower is better)
Translates to: HSVRKAQQCMLLSTATSTRICCD*LCEYLF
Trigger: GAATAAATACTCACAGAGTCAGTCACAACAGATGCG...TGTGCTAGTAGCAGTGCTCAGCAGCATGCACTGTTGAGCTTTTCTGACGCTGTG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000061350.13
ENSMUST00000100013.9
CDS-3UTR TCA 90 bp AGCGTCAGAAAAGCTCAACAGTGCATGCTGCTGAGCACTGCTACTAGCACAGAGTCAATGAAGAGAAACTaGAAGTCTCCCAGGTTACTC +
Preference number: 4 (lower is better)
Translates to: SVRKAQQCMLLSTATSTESMKRN*KSPRLL
Trigger: GAGTAACCTGGGAGACTTTCAGTTTCTCTTCATTGA...CTCTGTGCTAGTAGCAGTGCTCAGCAGCATGCACTGTTGAGCTTTTCTGACGCT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000061350.13
ENSMUST00000100013.9
CDS-3UTR TCA 90 bp ACTATGAAGGATATCTCAGACAGCAAGCAGTGGAGCGCCTTACTGTCTAGAAAGACGGAGATCACAATCTaGGACAAGACGGAGAAGAGG +
Preference number: 4 (lower is better)
Translates to: TMKDISDSKQWSALLSRKTEITI*DKTEKR
Trigger: CCTCTTCTCCGTCTTGTCTCAGATTGTGATCTCCGT...CTTTCTAGACAGTAAGGCGCTCCACTGCTTGCTGTCTGAGATATCCTTCATAGT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000061350.13
ENSMUST00000100013.9
CDS-3UTR TCA 90 bp ACACTCGCCCAAGCACTGTCTGCAGCATTCCCTTACAGCAGTTGGTGCTACAAGGCTATGGTGATAATCTaGCATGATCCATTCTCCTTT +
Preference number: 4 (lower is better)
Translates to: TLAQALSAAFPYSSWCYKAMVII*HDPFSF
Trigger: AAAGGAGAATGGATCATGTCAGATTATCACCATAGC...CTTGTAGCACCAACTGCTGTAAGGGAATGCTGCAGACAGTGCTTGGGCGAGTGT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000061350.13
ENSMUST00000100013.9
CDS-3UTR GCA 90 bp ACACTCGCCCAAGCACTGTCTGCAGCATTCCCTTACAGCAGTTGGTGCTACAAGTGTTTCTTCTTCAGTTaGTTCTTCCAGAATCCATCC +
Preference number: 4 (lower is better)
Translates to: TLAQALSAAFPYSSWCYKCFFFS*FFQNPS
Trigger: GGATGGATTCTGGAAGAAGCAACTGAAGAAGAAACA...CTTGTAGCACCAACTGCTGTAAGGGAATGCTGCAGACAGTGCTTGGGCGAGTGT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000061350.13
ENSMUST00000100013.9
CDS-3UTR GCA 90 bp GTCAGAAAAGCTCAACAGTGCATGCTGCTGAGCACTGCTACTAGCACAGAGAGCGATCCGGTTATGAAGTaGTGTTTCTTCTTCAGTTGC +
Preference number: 4 (lower is better)
Translates to: VRKAQQCMLLSTATSTESDPVMK*CFFFSC
Trigger: GCAACTGAAGAAGAAACAGCACTTCATAACCGGATC...GCTCTCTGTGCTAGTAGCAGTGCTCAGCAGCATGCACTGTTGAGCTTTTCTGAC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000061350.13
ENSMUST00000100013.9
CDS-3UTR GCA 90 bp GTCAGAAAAGCTCAACAGTGCATGCTGCTGAGCACTGCTACTAGCACAGAGAGCCATTTCTTGGTTTCCTaGAGTTGTAGGTTCAGGAAG +
Preference number: 4 (lower is better)
Translates to: VRKAQQCMLLSTATSTESHFLVS*SCRFRK
Trigger: CTTCCTGAACCTACAACTGCAGGAAACCAAGAAATG...GCTCTCTGTGCTAGTAGCAGTGCTCAGCAGCATGCACTGTTGAGCTTTTCTGAC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000061350.13
ENSMUST00000100013.9
CDS-3UTR GCA 90 bp AGCGTCAGAAAAGCTCAACAGTGCATGCTGCTGAGCACTGCTACTAGCACAGAGCAAATCTTCAAGTACTaGAGGGGTTTCCTGCTTCAA +
Preference number: 4 (lower is better)
Translates to: SVRKAQQCMLLSTATSTEQIFKY*RGFLLQ
Trigger: TTGAAGCAGGAAACCCCTGCAGTACTTGAAGATTTG...CTCTGTGCTAGTAGCAGTGCTCAGCAGCATGCACTGTTGAGCTTTTCTGACGCT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000061350.13
ENSMUST00000100013.9
CDS-3UTR CCA 90 bp AGTGCCATTCTGACACAGCGTCAGAAAAGCTCAACAGTGCATGCTGCTGAGCACAACAGCTCCATTTCTTaGTTTCCTGCAGTTGTAGGT +
Preference number: 4 (lower is better)
Translates to: SAILTQRQKSSTVHAAEHNSSIS*FPAVVG
Trigger: ACCTACAACTGCAGGAAACCAAGAAATGGAGCTGTT...GTGCTCAGCAGCATGCACTGTTGAGCTTTTCTGACGCTGTGTCAGAATGGCACT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000061350.13
ENSMUST00000100013.9
CDS-3UTR CCA 90 bp ATGACTTACAGAAGACTCAGTCTACCTATGGCACTAAGCAGGACCCATGTCTGCTTCCCTGATAAGGTTTaGCACACAGGAGATACTGGG +
Preference number: 4 (lower is better)
Translates to: MTYRRLSLPMALSRTHVCFPDKV*HTGDTG
Trigger: CCCAGTATCTCCTGTGTGCCAAACCTTATCAGGGAA...GCAGACATGGGTCCTGCTTAGTGCCATAGGTAGACTGAGTCTTCTGTAAGTCAT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000061350.13
ENSMUST00000100013.9
CDS-3UTR CCA 90 bp AGTGCCATTCTGACACAGCGTCAGAAAAGCTCAACAGTGCATGCTGCTGAGCACGTAACACTGAAGTACTaGATGATGCTGTATAACGCC +
Preference number: 4 (lower is better)
Translates to: SAILTQRQKSSTVHAAEHVTLKY*MMLYNA
Trigger: GGCGTTATACAGCATCATCCAGTACTTCAGTGTTAC...GTGCTCAGCAGCATGCACTGTTGAGCTTTTCTGACGCTGTGTCAGAATGGCACT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000061350.13
ENSMUST00000100013.9
CDS-3UTR CCA 90 bp AGTGCCATTCTGACACAGCGTCAGAAAAGCTCAACAGTGCATGCTGCTGAGCACATAATCTCAAGAACCTaGTCAACAGAGGCAACTGGA +
Preference number: 4 (lower is better)
Translates to: SAILTQRQKSSTVHAAEHIISRT*STEATG
Trigger: TCCAGTTGCCTCTGTTGACCAGGTTCTTGAGATTAT...GTGCTCAGCAGCATGCACTGTTGAGCTTTTCTGACGCTGTGTCAGAATGGCACT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000061350.13
ENSMUST00000100013.9
ENSMUST00000229503.2
CDS-3UTR TCA 90 bp AGCGTCAGAAAAGCTCAACAGTGCATGCTGCTGAGCACTGCTACTAGCACAGAGTTTTCTTCAGTCAGATaGACAGCATGGCCATTAGAA +
Preference number: 4 (lower is better)
Translates to: SVRKAQQCMLLSTATSTEFSSVR*TAWPLE
Trigger: TTCTAATGGCCATGCTGTTCATCTGACTGAAGAAAA...CTCTGTGCTAGTAGCAGTGCTCAGCAGCATGCACTGTTGAGCTTTTCTGACGCT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000061350.13
ENSMUST00000100013.9
CDS-3UTR TCA 90 bp AGCGTCAGAAAAGCTCAACAGTGCATGCTGCTGAGCACTGCTACTAGCACAGAGTCCTTTCACATCCACTaGAGGATTTGGCAAATTAGT +
Preference number: 4 (lower is better)
Translates to: SVRKAQQCMLLSTATSTESFHIH*RIWQIS
Trigger: ACTAATTTGCCAAATCCTTCAGTGGATGTGAAAGGA...CTCTGTGCTAGTAGCAGTGCTCAGCAGCATGCACTGTTGAGCTTTTCTGACGCT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000061350.13
ENSMUST00000100013.9
CDS-3UTR TCA 90 bp ATGACTTACAGAAGACTCAGTCTACCTATGGCACTAAGCAGGACCCATGTCTGCGGCATGATCCGGTTATaGAGTGCTGTTTCTTCTTCA +
Preference number: 4 (lower is better)
Translates to: MTYRRLSLPMALSRTHVCGMIRL*SAVSSS
Trigger: TGAAGAAGAAACAGCACTTCATAACCGGATCATGCC...GCAGACATGGGTCCTGCTTAGTGCCATAGGTAGACTGAGTCTTCTGTAAGTCAT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000061350.13
ENSMUST00000100013.9
CDS-3UTR TCA 90 bp CACTCGCCCAAGCACTGTCTGCAGCATTCCCTTACAGCAGTTGGTGCTACAAGAATAATAACTTTATCCTaGGGTAGAATCATCCCACAG +
Preference number: 4 (lower is better)
Translates to: HSPKHCLQHSLTAVGATRIITLS*GRIIPQ
Trigger: CTGTGGGATGATTCTACCTCAGGATAAAGTTATTAT...TCTTGTAGCACCAACTGCTGTAAGGGAATGCTGCAGACAGTGCTTGGGCGAGTG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000061350.13
ENSMUST00000100013.9
CDS-3UTR TCA 90 bp GTCAGAAAAGCTCAACAGTGCATGCTGCTGAGCACTGCTACTAGCACAGAGAGCGGTGATAATCTGACATaGTCCATTCTCCTTTACTAC +
Preference number: 4 (lower is better)
Translates to: VRKAQQCMLLSTATSTESGDNLT*SILLYY
Trigger: GTAGTAAAGGAGAATGGATCATGTCAGATTATCACC...GCTCTCTGTGCTAGTAGCAGTGCTCAGCAGCATGCACTGTTGAGCTTTTCTGAC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000061350.13
ENSMUST00000100013.9
ENSMUST00000229503.2
CDS-3UTR TCA 90 bp GTCAGAAAAGCTCAACAGTGCATGCTGCTGAGCACTGCTACTAGCACAGAGAGCGCTATGGTGATAATCTaGCATGATCCATTCTCCTTT +
Preference number: 4 (lower is better)
Translates to: VRKAQQCMLLSTATSTESAMVII*HDPFSF
Trigger: AAAGGAGAATGGATCATGTCAGATTATCACCATAGC...GCTCTCTGTGCTAGTAGCAGTGCTCAGCAGCATGCACTGTTGAGCTTTTCTGAC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000061350.13
ENSMUST00000100013.9
ENSMUST00000229503.2
CDS-3UTR GCA 90 bp ATGACTTACAGAAGACTCAGTCTACCTATGGCACTAAGCAGGACCCATGTCTGCACCACACTCATCCGTTaGAAGGCAGAAGAAAATGGA +
Preference number: 4 (lower is better)
Translates to: MTYRRLSLPMALSRTHVCTTLIR*KAEENG
Trigger: TCCATTTTCTTCTGCCTTGCAACGGATGAGTGTGGT...GCAGACATGGGTCCTGCTTAGTGCCATAGGTAGACTGAGTCTTCTGTAAGTCAT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000061350.13
ENSMUST00000100013.9
CDS-3UTR GCA 90 bp CACTCGCCCAAGCACTGTCTGCAGCATTCCCTTACAGCAGTTGGTGCTACAAGACGAATGTTGGCTTTATaGAAATCTTCAAGTACTGCA +
Preference number: 4 (lower is better)
Translates to: HSPKHCLQHSLTAVGATRRMLAL*KSSSTA
Trigger: TGCAGTACTTGAAGATTTGCATAAAGCCAACATTCG...TCTTGTAGCACCAACTGCTGTAAGGGAATGCTGCAGACAGTGCTTGGGCGAGTG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000061350.13
ENSMUST00000100013.9
CDS-3UTR GCA 90 bp GACAGGCTTTTACTATCTATTCCAGGACTAAACAATTCTCCTGCCTCAGCCTCCTGTCTTCTGATCCGGTaGCATTCGAGCAAACACAGT +
Preference number: 4 (lower is better)
Translates to: DRLLLSIPGLNNSPASASCLLIR*HSSKHS
Trigger: ACTGTGTTTGCTCGAATGGCACCGGATCAGAAGACA...GGAGGCTGAGGCAGGAGAATTGTTTAGTCCTGGAATAGATAGTAAAAGCCTGTC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000061350.13
ENSMUST00000100013.9
CDS-3UTR CCA 90 bp CACTCGCCCAAGCACTGTCTGCAGCATTCCCTTACAGCAGTTGGTGCTACAAGACAGATGTTTATCCTCTaGGGACTAATACAGAAAATC +
Preference number: 4 (lower is better)
Translates to: HSPKHCLQHSLTAVGATRQMFIL*GLIQKI
Trigger: GATTTTCTGTATTAGTCCCCAGAGGATAAACATCTG...TCTTGTAGCACCAACTGCTGTAAGGGAATGCTGCAGACAGTGCTTGGGCGAGTG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000061350.13
ENSMUST00000100013.9
CDS-3UTR CCA 90 bp CACTCGCCCAAGCACTGTCTGCAGCATTCCCTTACAGCAGTTGGTGCTACAAGAGAAGAAAATGGAAACTaGCGAACAATTCCTATCTCA +
Preference number: 4 (lower is better)
Translates to: HSPKHCLQHSLTAVGATREENGN*RTIPIS
Trigger: TGAGATAGGAATTGTTCGCCAGTTTCCATTTTCTTC...TCTTGTAGCACCAACTGCTGTAAGGGAATGCTGCAGACAGTGCTTGGGCGAGTG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000061350.13
ENSMUST00000100013.9
CDS-3UTR CCA 90 bp GACAGGCTTTTACTATCTATTCCAGGACTAAACAATTCTCCTGCCTCAGCCTCCCCTTTACTACAGCTTTaGCTTCCGTCGTTGTCTGAG +
Preference number: 4 (lower is better)
Translates to: DRLLLSIPGLNNSPASASPLLQL*LPSLSE
Trigger: CTCAGACAACGACGGAAGCCAAAGCTGTAGTAAAGG...GGAGGCTGAGGCAGGAGAATTGTTTAGTCCTGGAATAGATAGTAAAAGCCTGTC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000061350.13
ENSMUST00000100013.9
CDS-3UTR TCA 90 bp AGTGCCATTCTGACACAGCGTCAGAAAAGCTCAACAGTGCATGCTGCTGAGCACCTGTATAATGCCAATTaGTCTTGGCAACTTTTCCAT +
Preference number: 4 (lower is better)
Translates to: SAILTQRQKSSTVHAAEHLYNAN*SWQLFH
Trigger: ATGGAAAAGTTGCCAAGATCAATTGGCATTATACAG...GTGCTCAGCAGCATGCACTGTTGAGCTTTTCTGACGCTGTGTCAGAATGGCACT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000061350.13
ENSMUST00000100013.9
CDS-3UTR TCA 90 bp AGCGTCAGAAAAGCTCAACAGTGCATGCTGCTGAGCACTGCTACTAGCACAGAGTTAGGAACAAGATCTTaGAAATGTTCCAGTATCACC +
Preference number: 4 (lower is better)
Translates to: SVRKAQQCMLLSTATSTELGTRS*KCSSIT
Trigger: GGTGATACTGGAACATTTTCAAGATCTTGTTCCTAA...CTCTGTGCTAGTAGCAGTGCTCAGCAGCATGCACTGTTGAGCTTTTCTGACGCT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000061350.13
ENSMUST00000100013.9
CDS-3UTR TCA 90 bp TCACTAGTGGCAACAGCAGTAATAGTGATCCTGAGACACATTTACTTTTTCTACAGGCAACCGCCACTGTaGGGTACTGGAAACTGGAGA +
Preference number: 4 (lower is better)
Translates to: SLVATAVIVILRHIYFFYRQPPL*GTGNWR
Trigger: TCTCCAGTTTCCAGTACCTCACAGTGGCGGTTGCCT...GTAGAAAAAGTAAATGTGTCTCAGGATCACTATTACTGCTGTTGCCACTAGTGA
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000061350.13
ENSMUST00000100013.9
CDS-3UTR GCA 90 bp ATGACTTACAGAAGACTCAGTCTACCTATGGCACTAAGCAGGACCCATGTCTGCCAAATCTTCAAGTACTaGAGGGGTTTCCTGCTTCAA +
Preference number: 4 (lower is better)
Translates to: MTYRRLSLPMALSRTHVCQIFKY*RGFLLQ
Trigger: TTGAAGCAGGAAACCCCTGCAGTACTTGAAGATTTG...GCAGACATGGGTCCTGCTTAGTGCCATAGGTAGACTGAGTCTTCTGTAAGTCAT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000061350.13
ENSMUST00000100013.9
CDS-3UTR CCA 90 bp CCCATTATTCAAAGGAGAGACATAGCAAGGTTAAGGTCAAACTCAAAACAAAAACCGCTTGTGTGTCTCTaGGCTGTACTGCTCCTCCCC +
Preference number: 4 (lower is better)
Translates to: PIIQRRDIARLRSNSKQKPLVCL*AVLLLP
Trigger: GGGGAGGAGCAGTACAGCCCAGAGACACACAAGCGG...TTTTTGTTTTGAGTTTGACCTTAACCTTGCTATGTCTCTCCTTTGAATAATGGG
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000061350.13
ENSMUST00000100013.9
CDS-3UTR CCA 90 bp GTCAGAAAAGCTCAACAGTGCATGCTGCTGAGCACTGCTACTAGCACAGAGAGCTTTCTCAAAATCAACTaGAACTGTTTCCGGTTTGCA +
Preference number: 4 (lower is better)
Translates to: VRKAQQCMLLSTATSTESFLKIN*NCFRFA
Trigger: TGCAAACCGGAAACAGTTCCAGTTGATTTTGAGAAA...GCTCTCTGTGCTAGTAGCAGTGCTCAGCAGCATGCACTGTTGAGCTTTTCTGAC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000061350.13
ENSMUST00000100013.9
CDS-3UTR CCA 90 bp ACACTCGCCCAAGCACTGTCTGCAGCATTCCCTTACAGCAGTTGGTGCTACAAGCACGGAAACCTTGTTTaGTATAATCTTCTAACACTT +
Preference number: 4 (lower is better)
Translates to: TLAQALSAAFPYSSWCYKHGNLV*YNLLTL
Trigger: AAGTGTTAGAAGATTATACCAAACAAGGTTTCCGTG...CTTGTAGCACCAACTGCTGTAAGGGAATGCTGCAGACAGTGCTTGGGCGAGTGT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000061350.13
ENSMUST00000100013.9
CDS-3UTR CCA 90 bp CACTCGCCCAAGCACTGTCTGCAGCATTCCCTTACAGCAGTTGGTGCTACAAGATCCTCTAAACTATCATaGGCAAGTTTGATTGGAATA +
Preference number: 4 (lower is better)
Translates to: HSPKHCLQHSLTAVGATRSSKLS*ASLIGI
Trigger: TATTCCAATCAAACTTGCCCATGATAGTTTAGAGGA...TCTTGTAGCACCAACTGCTGTAAGGGAATGCTGCAGACAGTGCTTGGGCGAGTG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000061350.13
ENSMUST00000100013.9
CDS-3UTR CCA 90 bp ATGACTTACAGAAGACTCAGTCTACCTATGGCACTAAGCAGGACCCATGTCTGCATAATCTCAAGAACCTaGTCAACAGAGGCAACTGGA +
Preference number: 4 (lower is better)
Translates to: MTYRRLSLPMALSRTHVCIISRT*STEATG
Trigger: TCCAGTTGCCTCTGTTGACCAGGTTCTTGAGATTAT...GCAGACATGGGTCCTGCTTAGTGCCATAGGTAGACTGAGTCTTCTGTAAGTCAT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000061350.13
ENSMUST00000100013.9
CDS-3UTR CCA 90 bp AGCGTCAGAAAAGCTCAACAGTGCATGCTGCTGAGCACTGCTACTAGCACAGAGATATATATGCGCCACTaGTATGGTACACACATAATC +
Preference number: 4 (lower is better)
Translates to: SVRKAQQCMLLSTATSTEIYMRH*YGTHII
Trigger: GATTATGTGTGTACCATACCAGTGGCGCATATATAT...CTCTGTGCTAGTAGCAGTGCTCAGCAGCATGCACTGTTGAGCTTTTCTGACGCT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000061350.13
ENSMUST00000100013.9
ENSMUST00000229503.2
CDS-3UTR TCA 90 bp ATGACTTACAGAAGACTCAGTCTACCTATGGCACTAAGCAGGACCCATGTCTGCTCCTTTCACATCCACTaGAGGATTTGGCAAATTAGT +
Preference number: 4 (lower is better)
Translates to: MTYRRLSLPMALSRTHVCSFHIH*RIWQIS
Trigger: ACTAATTTGCCAAATCCTTCAGTGGATGTGAAAGGA...GCAGACATGGGTCCTGCTTAGTGCCATAGGTAGACTGAGTCTTCTGTAAGTCAT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000061350.13
ENSMUST00000100013.9
CDS-3UTR TCA 90 bp GACAGGCTTTTACTATCTATTCCAGGACTAAACAATTCTCCTGCCTCAGCCTCCTTTTTCAGTCTTCTCTaGGCATACACAATCCCAGCA +
Preference number: 4 (lower is better)
Translates to: DRLLLSIPGLNNSPASASFFSLL*AYTIPA
Trigger: TGCTGGGATTGTGTATGCTCAGAGAAGACTGAAAAA...GGAGGCTGAGGCAGGAGAATTGTTTAGTCCTGGAATAGATAGTAAAAGCCTGTC
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000061350.13
ENSMUST00000100013.9
CDS-3UTR TCA 90 bp ATGACTTACAGAAGACTCAGTCTACCTATGGCACTAAGCAGGACCCATGTCTGCCAGTATCACCGAAAATaGCTTTCCATTCATCGCAAA +
Preference number: 4 (lower is better)
Translates to: MTYRRLSLPMALSRTHVCQYHRK*LSIHRK
Trigger: TTTGCGATGAATGGAAAGTCATTTTCGGTGATACTG...GCAGACATGGGTCCTGCTTAGTGCCATAGGTAGACTGAGTCTTCTGTAAGTCAT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000061350.13
ENSMUST00000100013.9
CDS-3UTR TCA 90 bp ATGACTTACAGAAGACTCAGTCTACCTATGGCACTAAGCAGGACCCATGTCTGCGCTATGGTGATAATCTaGCATGATCCATTCTCCTTT +
Preference number: 4 (lower is better)
Translates to: MTYRRLSLPMALSRTHVCAMVII*HDPFSF
Trigger: AAAGGAGAATGGATCATGTCAGATTATCACCATAGC...GCAGACATGGGTCCTGCTTAGTGCCATAGGTAGACTGAGTCTTCTGTAAGTCAT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000061350.13
ENSMUST00000100013.9
CDS-3UTR GCA 90 bp ACTATGAAGGATATCTCAGACAGCAAGCAGTGGAGCGCCTTACTGTCTAGAAAGCATTTCTTGGTTTCCTaGAGTTGTAGGTTCAGGAAG +
Preference number: 4 (lower is better)
Translates to: TMKDISDSKQWSALLSRKHFLVS*SCRFRK
Trigger: CTTCCTGAACCTACAACTGCAGGAAACCAAGAAATG...CTTTCTAGACAGTAAGGCGCTCCACTGCTTGCTGTCTGAGATATCCTTCATAGT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000061350.13
ENSMUST00000100013.9
CDS-3UTR GCA 90 bp GACAGGCTTTTACTATCTATTCCAGGACTAAACAATTCTCCTGCCTCAGCCTCCACTGCAGGGGTTTCCTaGTTCAATTTGTTCTGCATT +
Preference number: 4 (lower is better)
Translates to: DRLLLSIPGLNNSPASASTAGVS*FNLFCI
Trigger: AATGCAGAACAAATTGAAGCAGGAAACCCCTGCAGT...GGAGGCTGAGGCAGGAGAATTGTTTAGTCCTGGAATAGATAGTAAAAGCCTGTC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000061350.13
ENSMUST00000100013.9
CDS-3UTR CCA 90 bp ATGACTTACAGAAGACTCAGTCTACCTATGGCACTAAGCAGGACCCATGTCTGCCATTTTCAAATCAAGTaGGTCACCAGAAAGTACACC +
Preference number: 4 (lower is better)
Translates to: MTYRRLSLPMALSRTHVCHFQIK*VTRKYT
Trigger: GGTGTACTTTCTGGTGACCCACTTGATTTGAAAATG...GCAGACATGGGTCCTGCTTAGTGCCATAGGTAGACTGAGTCTTCTGTAAGTCAT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000061350.13
ENSMUST00000100013.9
CDS-3UTR CCA 90 bp CACAGCGTCAGAAAAGCTCAACAGTGCATGCTGCTGAGCACTGCTACTAGCACACCAGAATCCATCCAATaGCTTCAAACATTTTCAAAT +
Preference number: 4 (lower is better)
Translates to: HSVRKAQQCMLLSTATSTPESIQ*LQTFSN
Trigger: ATTTGAAAATGTTTGAAGCCATTGGATGGATTCTGG...TGTGCTAGTAGCAGTGCTCAGCAGCATGCACTGTTGAGCTTTTCTGACGCTGTG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000061350.13
ENSMUST00000100013.9
CDS-3UTR CCA 90 bp ACTATGAAGGATATCTCAGACAGCAAGCAGTGGAGCGCCTTACTGTCTAGAAAGAACAGCTCCATTTCTTaGTTTCCTGCAGTTGTAGGT +
Preference number: 4 (lower is better)
Translates to: TMKDISDSKQWSALLSRKNSSIS*FPAVVG
Trigger: ACCTACAACTGCAGGAAACCAAGAAATGGAGCTGTT...CTTTCTAGACAGTAAGGCGCTCCACTGCTTGCTGTCTGAGATATCCTTCATAGT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000061350.13
ENSMUST00000100013.9
CDS-3UTR CCA 90 bp GACAGGCTTTTACTATCTATTCCAGGACTAAACAATTCTCCTGCCTCAGCCTCCATAATCTCAAGAACCTaGTCAACAGAGGCAACTGGA +
Preference number: 4 (lower is better)
Translates to: DRLLLSIPGLNNSPASASIISRT*STEATG
Trigger: TCCAGTTGCCTCTGTTGACCAGGTTCTTGAGATTAT...GGAGGCTGAGGCAGGAGAATTGTTTAGTCCTGGAATAGATAGTAAAAGCCTGTC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000061350.13
ENSMUST00000100013.9
3UTR CAA 72 bp CTACTGCCAAGAGACATAACCCCGATCCTTCTCTGCTaGTGTATTCTGAGACAGGCTTTTACTATCTATTCC +
Preference number: 4 (lower is better)
Translates to: LLPRDITPILLC*CILRQAFTIYS
Trigger: GGAATAGATAGTAAAAGCCTGTCTCAGAATACACAAGCAGAGAAGGATCGGGGTTATGTCTCTTGGCAGTAG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000061350.13
ENSMUST00000100013.9
CDS-3UTR TCA 90 bp GACAGGCTTTTACTATCTATTCCAGGACTAAACAATTCTCCTGCCTCAGCCTCCTCCATTTCATCTTCTTaGCCCTTGTTGATAGTCTTC +
Preference number: 4 (lower is better)
Translates to: DRLLLSIPGLNNSPASASSISSS*PLLIVF
Trigger: GAAGACTATCAACAAGGGTCAAGAAGATGAAATGGA...GGAGGCTGAGGCAGGAGAATTGTTTAGTCCTGGAATAGATAGTAAAAGCCTGTC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000061350.13
ENSMUST00000100013.9
CDS-3UTR TCA 90 bp GACAGGCTTTTACTATCTATTCCAGGACTAAACAATTCTCCTGCCTCAGCCTCCTTTTCTTCAGTCAGATaGACAGCATGGCCATTAGAA +
Preference number: 4 (lower is better)
Translates to: DRLLLSIPGLNNSPASASFSSVR*TAWPLE
Trigger: TTCTAATGGCCATGCTGTTCATCTGACTGAAGAAAA...GGAGGCTGAGGCAGGAGAATTGTTTAGTCCTGGAATAGATAGTAAAAGCCTGTC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000061350.13
ENSMUST00000100013.9
CDS-3UTR TCA 90 bp CAGCTCAAGAGGTCTAAGATGCATAGCTTCATAGAATCATTCACGGGACAATTGGGCATGATCCGGTTATaGAGTGCTGTTTCTTCTTCA +
Preference number: 4 (lower is better)
Translates to: QLKRSKMHSFIESFTGQLGMIRL*SAVSSS
Trigger: TGAAGAAGAAACAGCACTTCATAACCGGATCATGCC...CAATTGTCCCGTGAATGATTCTATGAAGCTATGCATCTTAGACCTCTTGAGCTG
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000061350.13
ENSMUST00000100013.9
CDS-3UTR TCA 90 bp CCCATTATTCAAAGGAGAGACATAGCAAGGTTAAGGTCAAACTCAAAACAAAAACCCAGATATAAGGCCTaGAGGTGGTCTCTGTGCCAC +
Preference number: 4 (lower is better)
Translates to: PIIQRRDIARLRSNSKQKPRYKA*RWSLCH
Trigger: GTGGCACAGAGACCACCTTCAGGCCTTATATCTGGG...TTTTTGTTTTGAGTTTGACCTTAACCTTGCTATGTCTCTCCTTTGAATAATGGG
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000061350.13
ENSMUST00000100013.9
CDS-3UTR TCA 90 bp CCCATTATTCAAAGGAGAGACATAGCAAGGTTAAGGTCAAACTCAAAACAAAAAAGGCAACCGCCACTGTaGGGTACTGGAAACTGGAGA +
Preference number: 4 (lower is better)
Translates to: PIIQRRDIARLRSNSKQKRQPPL*GTGNWR
Trigger: TCTCCAGTTTCCAGTACCTCACAGTGGCGGTTGCCT...TTTTTGTTTTGAGTTTGACCTTAACCTTGCTATGTCTCTCCTTTGAATAATGGG
43% GC, longest homopolymer 6 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000061350.13
ENSMUST00000100013.9
CDS-3UTR CCA 90 bp ACTATGAAGGATATCTCAGACAGCAAGCAGTGGAGCGCCTTACTGTCTAGAAAGCATTTTCAAATCAAGTaGGTCACCAGAAAGTACACC +
Preference number: 4 (lower is better)
Translates to: TMKDISDSKQWSALLSRKHFQIK*VTRKYT
Trigger: GGTGTACTTTCTGGTGACCCACTTGATTTGAAAATG...CTTTCTAGACAGTAAGGCGCTCCACTGCTTGCTGTCTGAGATATCCTTCATAGT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000061350.13
ENSMUST00000100013.9
CDS-3UTR CCA 90 bp ATGACTTACAGAAGACTCAGTCTACCTATGGCACTAAGCAGGACCCATGTCTGCATATATATGCGCCACTaGTATGGTACACACATAATC +
Preference number: 4 (lower is better)
Translates to: MTYRRLSLPMALSRTHVCIYMRH*YGTHII
Trigger: GATTATGTGTGTACCATACCAGTGGCGCATATATAT...GCAGACATGGGTCCTGCTTAGTGCCATAGGTAGACTGAGTCTTCTGTAAGTCAT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000061350.13
ENSMUST00000100013.9
CDS-3UTR TCA 90 bp CAGCTCAAGAGGTCTAAGATGCATAGCTTCATAGAATCATTCACGGGACAATTGGTATTTTCCACTCGCTaGATTCCCCACAGATCTAAA +
Preference number: 4 (lower is better)
Translates to: QLKRSKMHSFIESFTGQLVFSTR*IPHRSK
Trigger: TTTAGATCTGTGGGGAATTCAGCGAGTGGAAAATAC...CAATTGTCCCGTGAATGATTCTATGAAGCTATGCATCTTAGACCTCTTGAGCTG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000061350.13
ENSMUST00000100013.9
CDS-3UTR GCA 90 bp GACAGGCTTTTACTATCTATTCCAGGACTAAACAATTCTCCTGCCTCAGCCTCCTTACCAACATCTCACTaGAAACATTGTCTTCTGGTA +
Preference number: 4 (lower is better)
Translates to: DRLLLSIPGLNNSPASASLPTSH*KHCLLV
Trigger: TACCAGAAGACAATGTTTGCAGTGAGATGTTGGTAA...GGAGGCTGAGGCAGGAGAATTGTTTAGTCCTGGAATAGATAGTAAAAGCCTGTC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000061350.13
ENSMUST00000100013.9
CDS-3UTR GCA 90 bp CAGCTCAAGAGGTCTAAGATGCATAGCTTCATAGAATCATTCACGGGACAATTGATATGCTGTACTTTATaGCAGGTCAGCTTTGACTCC +
Preference number: 4 (lower is better)
Translates to: QLKRSKMHSFIESFTGQLICCTL*QVSFDS
Trigger: GGAGTCAAAGCTGACCTGGCATAAAGTACAGCATAT...CAATTGTCCCGTGAATGATTCTATGAAGCTATGCATCTTAGACCTCTTGAGCTG
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000061350.13
ENSMUST00000100013.9
CDS-3UTR GCA 90 bp TCACTAGTGGCAACAGCAGTAATAGTGATCCTGAGACACATTTACTTTTTCTACGCTCAGATAAGGAAATaGCACCATGTGCCCTCTTCA +
Preference number: 4 (lower is better)
Translates to: SLVATAVIVILRHIYFFYAQIRK*HHVPSS
Trigger: TGAAGAGGGCACATGGTGGCATTTCCTTATCTGAGC...GTAGAAAAAGTAAATGTGTCTCAGGATCACTATTACTGCTGTTGCCACTAGTGA
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000061350.13
ENSMUST00000100013.9
CDS-3UTR CCA 90 bp ATGACTTACAGAAGACTCAGTCTACCTATGGCACTAAGCAGGACCCATGTCTGCTCCTCTAAACTATCATaGGCAAGTTTGATTGGAATA +
Preference number: 4 (lower is better)
Translates to: MTYRRLSLPMALSRTHVCSSKLS*ASLIGI
Trigger: TATTCCAATCAAACTTGCCCATGATAGTTTAGAGGA...GCAGACATGGGTCCTGCTTAGTGCCATAGGTAGACTGAGTCTTCTGTAAGTCAT
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000061350.13
ENSMUST00000100013.9
CDS-3UTR TCA 90 bp GAAAGAAACACATTATTTACCATGCCTTTGAAACTGTGCAGTACTTTCATCAACACTCTCACGGTACTGTaGGTTGCCACCATGTCATGT +
Preference number: 4 (lower is better)
Translates to: ERNTLFTMPLKLCSTFINTLTVL*VATMSC
Trigger: ACATGACATGGTGGCAACTCACAGTACCGTGAGAGT...GTTGATGAAAGTACTGCACAGTTTCAAAGGCATGGTAAATAATGTGTTTCTTTC
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000061350.13
ENSMUST00000100013.9
CDS-3UTR TCA 90 bp GAAAGAAACACATTATTTACCATGCCTTTGAAACTGTGCAGTACTTTCATCAACACGGAGATCACAATCTaGGACAAGACGGAGAAGAGG +
Preference number: 4 (lower is better)
Translates to: ERNTLFTMPLKLCSTFINTEITI*DKTEKR
Trigger: CCTCTTCTCCGTCTTGTCTCAGATTGTGATCTCCGT...GTTGATGAAAGTACTGCACAGTTTCAAAGGCATGGTAAATAATGTGTTTCTTTC
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000061350.13
ENSMUST00000100013.9
CDS-3UTR GCA 90 bp TCACTAGTGGCAACAGCAGTAATAGTGATCCTGAGACACATTTACTTTTTCTACCCCCTGTGTCAGTCCTaGACTATGCTTTTCATAAAG +
Preference number: 4 (lower is better)
Translates to: SLVATAVIVILRHIYFFYPLCQS*TMLFIK
Trigger: CTTTATGAAAAGCATAGTGCAGGACTGACACAGGGG...GTAGAAAAAGTAAATGTGTCTCAGGATCACTATTACTGCTGTTGCCACTAGTGA
41% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 2 transcripts:
ENSMUST00000061350.13
ENSMUST00000100013.9
CDS-3UTR GCA 90 bp GAAAGAAACACATTATTTACCATGCCTTTGAAACTGTGCAGTACTTTCATCAACCCACAAAACAAAGTGTaGCGCTTGTGTGTCTCTGGG +
Preference number: 4 (lower is better)
Translates to: ERNTLFTMPLKLCSTFINPQNKV*RLCVSG
Trigger: CCCAGAGACACACAAGCGGCACACTTTGTTTTGTGG...GTTGATGAAAGTACTGCACAGTTTCAAAGGCATGGTAAATAATGTGTTTCTTTC
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000061350.13
ENSMUST00000100013.9
CDS-3UTR GCA 90 bp GAAAGAAACACATTATTTACCATGCCTTTGAAACTGTGCAGTACTTTCATCAACAGCACCACAATCATTTaGACCATCACCGCACATCCC +
Preference number: 4 (lower is better)
Translates to: ERNTLFTMPLKLCSTFINSTTII*TITAHP
Trigger: GGGATGTGCGGTGATGGTGCAAATGATTGTGGTGCT...GTTGATGAAAGTACTGCACAGTTTCAAAGGCATGGTAAATAATGTGTTTCTTTC
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000061350.13
ENSMUST00000100013.9
CDS-3UTR GCA 90 bp CCCATTATTCAAAGGAGAGACATAGCAAGGTTAAGGTCAAACTCAAAACAAAAAGGAAATGCCACCATGTaGCCTCTTCAAAGCACCACA +
Preference number: 4 (lower is better)
Translates to: PIIQRRDIARLRSNSKQKGNATM*PLQSTT
Trigger: TGTGGTGCTTTGAAGAGGGCACATGGTGGCATTTCC...TTTTTGTTTTGAGTTTGACCTTAACCTTGCTATGTCTCTCCTTTGAATAATGGG
41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000061350.13
ENSMUST00000100013.9
CDS-3UTR CCA 90 bp GACAGGCTTTTACTATCTATTCCAGGACTAAACAATTCTCCTGCCTCAGCCTCCTTTTGCATTCAAATTTaGTTGATTCTCCACAGGAAG +
Preference number: 4 (lower is better)
Translates to: DRLLLSIPGLNNSPASASFCIQI*LILHRK
Trigger: CTTCCTGTGGAGAATCAACCAAATTTGAATGCAAAA...GGAGGCTGAGGCAGGAGAATTGTTTAGTCCTGGAATAGATAGTAAAAGCCTGTC
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000061350.13
ENSMUST00000100013.9
CDS-3UTR CCA 90 bp ACTATGAAGGATATCTCAGACAGCAAGCAGTGGAGCGCCTTACTGTCTAGAAAGTTTTGCATTCAAATTTaGTTGATTCTCCACAGGAAG +
Preference number: 4 (lower is better)
Translates to: TMKDISDSKQWSALLSRKFCIQI*LILHRK
Trigger: CTTCCTGTGGAGAATCAACCAAATTTGAATGCAAAA...CTTTCTAGACAGTAAGGCGCTCCACTGCTTGCTGTCTGAGATATCCTTCATAGT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000061350.13
ENSMUST00000100013.9
CDS-3UTR CCA 90 bp ACTATGAAGGATATCTCAGACAGCAAGCAGTGGAGCGCCTTACTGTCTAGAAAGCCAGAATCCATCCAATaGCTTCAAACATTTTCAAAT +
Preference number: 4 (lower is better)
Translates to: TMKDISDSKQWSALLSRKPESIQ*LQTFSN
Trigger: ATTTGAAAATGTTTGAAGCCATTGGATGGATTCTGG...CTTTCTAGACAGTAAGGCGCTCCACTGCTTGCTGTCTGAGATATCCTTCATAGT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000061350.13
ENSMUST00000100013.9
CDS-3UTR TCA 90 bp CAGCTCAAGAGGTCTAAGATGCATAGCTTCATAGAATCATTCACGGGACAATTGCTGTATAATGCCAATTaGTCTTGGCAACTTTTCCAT +
Preference number: 4 (lower is better)
Translates to: QLKRSKMHSFIESFTGQLLYNAN*SWQLFH
Trigger: ATGGAAAAGTTGCCAAGATCAATTGGCATTATACAG...CAATTGTCCCGTGAATGATTCTATGAAGCTATGCATCTTAGACCTCTTGAGCTG
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000061350.13
ENSMUST00000100013.9
CDS-3UTR TCA 90 bp TCACTAGTGGCAACAGCAGTAATAGTGATCCTGAGACACATTTACTTTTTCTACTCAATGAAGAGAAACTaGAAGTCTCCCAGGTTACTC +
Preference number: 4 (lower is better)
Translates to: SLVATAVIVILRHIYFFYSMKRN*KSPRLL
Trigger: GAGTAACCTGGGAGACTTTCAGTTTCTCTTCATTGA...GTAGAAAAAGTAAATGTGTCTCAGGATCACTATTACTGCTGTTGCCACTAGTGA
40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000061350.13
ENSMUST00000100013.9
CDS-3UTR GCA 90 bp CAGCTCAAGAGGTCTAAGATGCATAGCTTCATAGAATCATTCACGGGACAATTGACCATTAATAAGTACTaGATCACAAGGCATGACTGT +
Preference number: 4 (lower is better)
Translates to: QLKRSKMHSFIESFTGQLTINKY*ITRHDC
Trigger: ACAGTCATGCCTTGTGATGCAGTACTTATTAATGGT...CAATTGTCCCGTGAATGATTCTATGAAGCTATGCATCTTAGACCTCTTGAGCTG
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000061350.13
ENSMUST00000100013.9
CDS-3UTR CCA 90 bp CAGCTCAAGAGGTCTAAGATGCATAGCTTCATAGAATCATTCACGGGACAATTGGAAGAAAATGGAAACTaGCGAACAATTCCTATCTCA +
Preference number: 4 (lower is better)
Translates to: QLKRSKMHSFIESFTGQLEENGN*RTIPIS
Trigger: TGAGATAGGAATTGTTCGCCAGTTTCCATTTTCTTC...CAATTGTCCCGTGAATGATTCTATGAAGCTATGCATCTTAGACCTCTTGAGCTG
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000061350.13
ENSMUST00000100013.9
CDS-3UTR CCA 90 bp TCACTAGTGGCAACAGCAGTAATAGTGATCCTGAGACACATTTACTTTTTCTACGTAACACTGAAGTACTaGATGATGCTGTATAACGCC +
Preference number: 4 (lower is better)
Translates to: SLVATAVIVILRHIYFFYVTLKY*MMLYNA
Trigger: GGCGTTATACAGCATCATCCAGTACTTCAGTGTTAC...GTAGAAAAAGTAAATGTGTCTCAGGATCACTATTACTGCTGTTGCCACTAGTGA
40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000061350.13
ENSMUST00000100013.9
CDS-3UTR CCA 90 bp CCCATTATTCAAAGGAGAGACATAGCAAGGTTAAGGTCAAACTCAAAACAAAAACCTTTACTACAGCTTTaGCTTCCGTCGTTGTCTGAG +
Preference number: 4 (lower is better)
Translates to: PIIQRRDIARLRSNSKQKPLLQL*LPSLSE
Trigger: CTCAGACAACGACGGAAGCCAAAGCTGTAGTAAAGG...TTTTTGTTTTGAGTTTGACCTTAACCTTGCTATGTCTCTCCTTTGAATAATGGG
40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000061350.13
ENSMUST00000100013.9
3UTR CAA 72 bp GCCAGGTCCTACCTAGGAAAGCATTGTGAAAGTTCCTaGAGAACTGAACAGAATCAGATAAAACACAAATGT +
Preference number: 4 (lower is better)
Translates to: ARSYLGKHCESS*RTEQNQIKHKC
Trigger: ACATTTGTGTTTTATCTGATTCTGTTCAGTTCTCAAGGAACTTTCACAATGCTTTCCTAGGTAGGACCTGGC
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000061350.13
ENSMUST00000100013.9
CDS-3UTR TCA 90 bp TCACTAGTGGCAACAGCAGTAATAGTGATCCTGAGACACATTTACTTTTTCTACTCCATTTCATCTTCTTaGCCCTTGTTGATAGTCTTC +
Preference number: 4 (lower is better)
Translates to: SLVATAVIVILRHIYFFYSISSS*PLLIVF
Trigger: GAAGACTATCAACAAGGGTCAAGAAGATGAAATGGA...GTAGAAAAAGTAAATGTGTCTCAGGATCACTATTACTGCTGTTGCCACTAGTGA
39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000061350.13
ENSMUST00000100013.9
CDS-3UTR TCA 90 bp TCACTAGTGGCAACAGCAGTAATAGTGATCCTGAGACACATTTACTTTTTCTACGCATTCAAATTTGGTTaGTTCTCCACAGGAAGAAAG +
Preference number: 4 (lower is better)
Translates to: SLVATAVIVILRHIYFFYAFKFG*FSTGRK
Trigger: CTTTCTTCCTGTGGAGAATCAACCAAATTTGAATGC...GTAGAAAAAGTAAATGTGTCTCAGGATCACTATTACTGCTGTTGCCACTAGTGA
39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000061350.13
ENSMUST00000100013.9
CDS-3UTR TCA 90 bp TCACTAGTGGCAACAGCAGTAATAGTGATCCTGAGACACATTTACTTTTTCTACGGTGATAATCTGACATaGTCCATTCTCCTTTACTAC +
Preference number: 4 (lower is better)
Translates to: SLVATAVIVILRHIYFFYGDNLT*SILLYY
Trigger: GTAGTAAAGGAGAATGGATCATGTCAGATTATCACC...GTAGAAAAAGTAAATGTGTCTCAGGATCACTATTACTGCTGTTGCCACTAGTGA
39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000061350.13
ENSMUST00000100013.9
CDS-3UTR CCA 90 bp CAGCTCAAGAGGTCTAAGATGCATAGCTTCATAGAATCATTCACGGGACAATTGCACGGAAACCTTGTTTaGTATAATCTTCTAACACTT +
Preference number: 4 (lower is better)
Translates to: QLKRSKMHSFIESFTGQLHGNLV*YNLLTL
Trigger: AAGTGTTAGAAGATTATACCAAACAAGGTTTCCGTG...CAATTGTCCCGTGAATGATTCTATGAAGCTATGCATCTTAGACCTCTTGAGCTG
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000061350.13
ENSMUST00000100013.9
CDS-3UTR TCA 90 bp GAAAGAAACACATTATTTACCATGCCTTTGAAACTGTGCAGTACTTTCATCAACTTTTTCAGTCTTCTCTaGGCATACACAATCCCAGCA +
Preference number: 4 (lower is better)
Translates to: ERNTLFTMPLKLCSTFINFFSLL*AYTIPA
Trigger: TGCTGGGATTGTGTATGCTCAGAGAAGACTGAAAAA...GTTGATGAAAGTACTGCACAGTTTCAAAGGCATGGTAAATAATGTGTTTCTTTC
38% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000061350.13
ENSMUST00000100013.9
CDS-3UTR TCA 90 bp TCACTAGTGGCAACAGCAGTAATAGTGATCCTGAGACACATTTACTTTTTCTACTTAGGAACAAGATCTTaGAAATGTTCCAGTATCACC +
Preference number: 4 (lower is better)
Translates to: SLVATAVIVILRHIYFFYLGTRS*KCSSIT
Trigger: GGTGATACTGGAACATTTTCAAGATCTTGTTCCTAA...GTAGAAAAAGTAAATGTGTCTCAGGATCACTATTACTGCTGTTGCCACTAGTGA
38% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000061350.13
ENSMUST00000100013.9
CDS-3UTR GCA 90 bp CCCATTATTCAAAGGAGAGACATAGCAAGGTTAAGGTCAAACTCAAAACAAAAATTCACAGTCTTTAACTaGAGCTCTAACACATGTGGC +
Preference number: 4 (lower is better)
Translates to: PIIQRRDIARLRSNSKQKFTVFN*SSNTCG
Trigger: GCCACATGTGTTAGAGCTGCAGTTAAAGACTGTGAA...TTTTTGTTTTGAGTTTGACCTTAACCTTGCTATGTCTCTCCTTTGAATAATGGG
38% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000061350.13
ENSMUST00000100013.9
CDS-3UTR GCA 90 bp CCCATTATTCAAAGGAGAGACATAGCAAGGTTAAGGTCAAACTCAAAACAAAAAATATGCTGTACTTTATaGCAGGTCAGCTTTGACTCC +
Preference number: 4 (lower is better)
Translates to: PIIQRRDIARLRSNSKQKICCTL*QVSFDS
Trigger: GGAGTCAAAGCTGACCTGGCATAAAGTACAGCATAT...TTTTTGTTTTGAGTTTGACCTTAACCTTGCTATGTCTCTCCTTTGAATAATGGG
38% GC, longest homopolymer 6 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000061350.13
ENSMUST00000100013.9
CDS-3UTR GCA 90 bp TCACTAGTGGCAACAGCAGTAATAGTGATCCTGAGACACATTTACTTTTTCTACCGAATGTTGGCTTTATaGAAATCTTCAAGTACTGCA +
Preference number: 4 (lower is better)
Translates to: SLVATAVIVILRHIYFFYRMLAL*KSSSTA
Trigger: TGCAGTACTTGAAGATTTGCATAAAGCCAACATTCG...GTAGAAAAAGTAAATGTGTCTCAGGATCACTATTACTGCTGTTGCCACTAGTGA
38% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000061350.13
ENSMUST00000100013.9
CDS-3UTR TCA 90 bp CCCATTATTCAAAGGAGAGACATAGCAAGGTTAAGGTCAAACTCAAAACAAAAACAGTATCACCGAAAATaGCTTTCCATTCATCGCAAA +
Preference number: 4 (lower is better)
Translates to: PIIQRRDIARLRSNSKQKQYHRK*LSIHRK
Trigger: TTTGCGATGAATGGAAAGTCATTTTCGGTGATACTG...TTTTTGTTTTGAGTTTGACCTTAACCTTGCTATGTCTCTCCTTTGAATAATGGG
37% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000061350.13
ENSMUST00000100013.9
CDS-3UTR GCA 90 bp GAAAGAAACACATTATTTACCATGCCTTTGAAACTGTGCAGTACTTTCATCAACTGTTTCTTCTTCAGTTaGTTCTTCCAGAATCCATCC +
Preference number: 4 (lower is better)
Translates to: ERNTLFTMPLKLCSTFINCFFFS*FFQNPS
Trigger: GGATGGATTCTGGAAGAAGCAACTGAAGAAGAAACA...GTTGATGAAAGTACTGCACAGTTTCAAAGGCATGGTAAATAATGTGTTTCTTTC
37% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000061350.13
ENSMUST00000100013.9
CDS-3UTR GCA 90 bp GAAAGAAACACATTATTTACCATGCCTTTGAAACTGTGCAGTACTTTCATCAACCTCCAATTTTCTGTGTaGAAGAGCAATTACACGGAA +
Preference number: 4 (lower is better)
Translates to: ERNTLFTMPLKLCSTFINLQFSV*KSNYTE
Trigger: TTCCGTGTAATTGCTCTTGCACACAGAAAATTGGAG...GTTGATGAAAGTACTGCACAGTTTCAAAGGCATGGTAAATAATGTGTTTCTTTC
37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000061350.13
ENSMUST00000100013.9
CDS-3UTR TCA 90 bp GAAAGAAACACATTATTTACCATGCCTTTGAAACTGTGCAGTACTTTCATCAACATAATAACTTTATCCTaGGGTAGAATCATCCCACAG +
Preference number: 4 (lower is better)
Translates to: ERNTLFTMPLKLCSTFINIITLS*GRIIPQ
Trigger: CTGTGGGATGATTCTACCTCAGGATAAAGTTATTAT...GTTGATGAAAGTACTGCACAGTTTCAAAGGCATGGTAAATAATGTGTTTCTTTC
36% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000061350.13
ENSMUST00000100013.9
CDS-3UTR GCA 90 bp CCCATTATTCAAAGGAGAGACATAGCAAGGTTAAGGTCAAACTCAAAACAAAAATTACCAACATCTCACTaGAAACATTGTCTTCTGGTA +
Preference number: 4 (lower is better)
Translates to: PIIQRRDIARLRSNSKQKLPTSH*KHCLLV
Trigger: TACCAGAAGACAATGTTTGCAGTGAGATGTTGGTAA...TTTTTGTTTTGAGTTTGACCTTAACCTTGCTATGTCTCTCCTTTGAATAATGGG
36% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000061350.13
ENSMUST00000100013.9
CDS-3UTR CCA 90 bp CCCATTATTCAAAGGAGAGACATAGCAAGGTTAAGGTCAAACTCAAAACAAAAACAGATGTTTATCCTCTaGGGACTAATACAGAAAATC +
Preference number: 4 (lower is better)
Translates to: PIIQRRDIARLRSNSKQKQMFIL*GLIQKI
Trigger: GATTTTCTGTATTAGTCCCCAGAGGATAAACATCTG...TTTTTGTTTTGAGTTTGACCTTAACCTTGCTATGTCTCTCCTTTGAATAATGGG
36% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000061350.13
ENSMUST00000100013.9
CDS-3UTR CAA 90 bp CACTCGCCCAAGCACTGTCTGCAGCATTCCCTTACAGCAGTTGGTGCTACAAGACAATCCCAGCAGTCATaGCAGCAGGAAGAGCAGGTG +
Preference number: 5 (lower is better)
Translates to: HSPKHCLQHSLTAVGATRQSQQS*QQEEQV
Trigger: CACCTGCTCTTCCTGCTGCAATGACTGCTGGGATTG...TCTTGTAGCACCAACTGCTGTAAGGGAATGCTGCAGACAGTGCTTGGGCGAGTG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000061350.13
ENSMUST00000100013.9
CDS TCA 90 bp CATGATCCATTCTCCTTTACTACAGCTTTGGCTTCCGTCGTTGTCTaGGGTTTAGGCGGCCACTCAGGATCAAAGCGGAGCTCCTGTGCT +
Preference number: 5 (lower is better)
Translates to: HDPFSFTTALASVVV*GLGGHSGSKRSSCA
Trigger: AGCACAGGAGCTCCGCTTTGATCCTGAGTGGCCGCCTAAACCTCAGACAACGACGGAAGCCAAAGCTGTAGTAAAGGAGAATGGATCATG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000061350.13
ENSMUST00000100013.9
ENSMUST00000229503.2
CDS-3UTR CAA 90 bp CACAGCGTCAGAAAAGCTCAACAGTGCATGCTGCTGAGCACTGCTACTAGCACACAATGCCTCCACCAATaGTGTCTTCTGATCCGGTGC +
Preference number: 5 (lower is better)
Translates to: HSVRKAQQCMLLSTATSTQCLHQ*CLLIRC
Trigger: GCACCGGATCAGAAGACACAATTGGTGGAGGCATTG...TGTGCTAGTAGCAGTGCTCAGCAGCATGCACTGTTGAGCTTTTCTGACGCTGTG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000061350.13
ENSMUST00000100013.9
CDS GCA 90 bp GTCCCACAAAACAAAGTGTGCCGCTTGTGTGTCTCTGGGCTGTACTaGTCCTCCCCCATTCCTTTCACATCCACTGAAGGATTTGGCAAA +
Preference number: 5 (lower is better)
Translates to: VPQNKVCRLCVSGLY*SSPIPFTSTEGFGK
Trigger: TTTGCCAAATCCTTCAGTGGATGTGAAAGGAATGGGGGAGGAGCAGTACAGCCCAGAGACACACAAGCGGCACACTTTGTTTTGTGGGAC
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000061350.13
ENSMUST00000100013.9
CDS-3UTR CAA 90 bp GTCAGAAAAGCTCAACAGTGCATGCTGCTGAGCACTGCTACTAGCACAGAGAGCTCTCACCTAGTGTCCTaGCAACCACACTCATCCGTT +
Preference number: 5 (lower is better)
Translates to: VRKAQQCMLLSTATSTESSHLVS*QPHSSV
Trigger: AACGGATGAGTGTGGTTGCAAGGACACTAGGTGAGA...GCTCTCTGTGCTAGTAGCAGTGCTCAGCAGCATGCACTGTTGAGCTTTTCTGAC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000061350.13
ENSMUST00000100013.9
CDS-3UTR CAA 90 bp GTCAGAAAAGCTCAACAGTGCATGCTGCTGAGCACTGCTACTAGCACAGAGAGCAACCACACTCATCCGTaGCAAGGCAGAAGAAAATGG +
Preference number: 5 (lower is better)
Translates to: VRKAQQCMLLSTATSTESNHTHP*QGRRKW
Trigger: CCATTTTCTTCTGCCTTGCAACGGATGAGTGTGGTT...GCTCTCTGTGCTAGTAGCAGTGCTCAGCAGCATGCACTGTTGAGCTTTTCTGAC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000061350.13
ENSMUST00000100013.9
CDS-3UTR CAA 90 bp CACTCGCCCAAGCACTGTCTGCAGCATTCCCTTACAGCAGTTGGTGCTACAAGATATGCCAGGTCAGCTTaGACTCCAATTTTCTGTGTG +
Preference number: 5 (lower is better)
Translates to: HSPKHCLQHSLTAVGATRYARSA*TPIFCV
Trigger: CACACAGAAAATTGGAGTCAAAGCTGACCTGGCATA...TCTTGTAGCACCAACTGCTGTAAGGGAATGCTGCAGACAGTGCTTGGGCGAGTG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000061350.13
ENSMUST00000100013.9
CDS-3UTR CAA 90 bp CACTCGCCCAAGCACTGTCTGCAGCATTCCCTTACAGCAGTTGGTGCTACAAGACTATCATGGGCAAGTTaGATTGGAATAGCCTCTGAG +
Preference number: 5 (lower is better)
Translates to: HSPKHCLQHSLTAVGATRLSWAS*IGIASE
Trigger: CTCAGAGGCTATTCCAATCAAACTTGCCCATGATAG...TCTTGTAGCACCAACTGCTGTAAGGGAATGCTGCAGACAGTGCTTGGGCGAGTG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000061350.13
ENSMUST00000100013.9
CDS GCA 90 bp AAATTCATCAGTTGTCCTGAGAAGCACCACTTCACAGTCTTTAACTaGAGCTCTAACACATGTGGCTTTCACTCGCCACTCAGGCAGCCA +
Preference number: 5 (lower is better)
Translates to: KFISCPEKHHFTVFN*SSNTCGFHSPLRQP
Trigger: TGGCTGCCTGAGTGGCGAGTGAAAGCCACATGTGTTAGAGCTGCAGTTAAAGACTGTGAAGTGGTGCTTCTCAGGACAACTGATGAATTT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000061350.13
ENSMUST00000100013.9
CDS GCA 90 bp GTCTACGTTCTGCAATGCCTCCACCAATTGTGTCTTCTGATCCGGTaGCATTCGAGCAAACACAGTACCATGCAACATCAACTTAGGAAC +
Preference number: 5 (lower is better)
Translates to: VYVLQCLHQLCLLIR*HSSKHSTMQHQLRN
Trigger: GTTCCTAAGTTGATGTTGCATGGTACTGTGTTTGCTCGAATGGCACCGGATCAGAAGACACAATTGGTGGAGGCATTGCAGAACGTAGAC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000061350.13
ENSMUST00000100013.9
CDS-3UTR CAA 90 bp CAGCTCAAGAGGTCTAAGATGCATAGCTTCATAGAATCATTCACGGGACAATTGCAATCCCAGCAGTCATaGCAGCAGGAAGAGCAGGTG +
Preference number: 5 (lower is better)
Translates to: QLKRSKMHSFIESFTGQLQSQQS*QQEEQV
Trigger: CACCTGCTCTTCCTGCTGCAATGACTGCTGGGATTG...CAATTGTCCCGTGAATGATTCTATGAAGCTATGCATCTTAGACCTCTTGAGCTG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000061350.13
ENSMUST00000100013.9
CDS-3UTR CAA 90 bp AGCGTCAGAAAAGCTCAACAGTGCATGCTGCTGAGCACTGCTACTAGCACAGAGCAACTTTTCCATCCTTaGGAGGTAATGCTTCAGCAA +
Preference number: 5 (lower is better)
Translates to: SVRKAQQCMLLSTATSTEQLFHP*EVMLQQ
Trigger: TTGCTGAAGCATTACCTCCAAAGGATGGAAAAGTTG...CTCTGTGCTAGTAGCAGTGCTCAGCAGCATGCACTGTTGAGCTTTTCTGACGCT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000061350.13
ENSMUST00000100013.9
CDS-3UTR CAA 90 bp CACTCGCCCAAGCACTGTCTGCAGCATTCCCTTACAGCAGTTGGTGCTACAAGACCTTGTTTGTCTCGATaGAATACAACTTTCCAAAGG +
Preference number: 5 (lower is better)
Translates to: HSPKHCLQHSLTAVGATRPCLSR*NTTFQR
Trigger: CCTTTGGAAAGTTGTATTCAATCGAGACAAACAAGG...TCTTGTAGCACCAACTGCTGTAAGGGAATGCTGCAGACAGTGCTTGGGCGAGTG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000100013.9
CDS-3UTR CAA 90 bp GTCAGAAAAGCTCAACAGTGCATGCTGCTGAGCACTGCTACTAGCACAGAGAGCCGACACTCTCCTTGTTaGTCTCGATTGAATACAACT +
Preference number: 5 (lower is better)
Translates to: VRKAQQCMLLSTATSTESRHSPC*SRLNTT
Trigger: AGTTGTATTCAATCGAGACAAACAAGGAGAGTGTCG...GCTCTCTGTGCTAGTAGCAGTGCTCAGCAGCATGCACTGTTGAGCTTTTCTGAC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000100013.9
ENSMUST00000229503.2
CDS GCA 90 bp TCCATCCTCTTCTCACCTAGTGTCCTTGCAACCACACTCATCCGTTaGAAGGCAGAAGAAAATGGAAACTGGCGAACAATTCCTATCTCA +
Preference number: 5 (lower is better)
Translates to: SILFSPSVLATTLIR*KAEENGNWRTIPIS
Trigger: TGAGATAGGAATTGTTCGCCAGTTTCCATTTTCTTCTGCCTTGCAACGGATGAGTGTGGTTGCAAGGACACTAGGTGAGAAGAGGATGGA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000061350.13
ENSMUST00000100013.9
CDS-3UTR CAA 90 bp ACTATGAAGGATATCTCAGACAGCAAGCAGTGGAGCGCCTTACTGTCTAGAAAGTCACGGTACTGTGAGTaGCCACCATGTCATGTAACA +
Preference number: 5 (lower is better)
Translates to: TMKDISDSKQWSALLSRKSRYCE*PPCHVT
Trigger: TGTTACATGACATGGTGGCAACTCACAGTACCGTGA...CTTTCTAGACAGTAAGGCGCTCCACTGCTTGCTGTCTGAGATATCCTTCATAGT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000061350.13
ENSMUST00000100013.9
CDS-3UTR CAA 90 bp ATGACTTACAGAAGACTCAGTCTACCTATGGCACTAAGCAGGACCCATGTCTGCAAACAGCTCCATTTCTaGGTTTCCTGCAGTTGTAGG +
Preference number: 5 (lower is better)
Translates to: MTYRRLSLPMALSRTHVCKQLHF*VSCSCR
Trigger: CCTACAACTGCAGGAAACCAAGAAATGGAGCTGTTT...GCAGACATGGGTCCTGCTTAGTGCCATAGGTAGACTGAGTCTTCTGTAAGTCAT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000061350.13
ENSMUST00000100013.9
CDS-3UTR CAA 90 bp GACAGGCTTTTACTATCTATTCCAGGACTAAACAATTCTCCTGCCTCAGCCTCCAACCACACTCATCCGTaGCAAGGCAGAAGAAAATGG +
Preference number: 5 (lower is better)
Translates to: DRLLLSIPGLNNSPASASNHTHP*QGRRKW
Trigger: CCATTTTCTTCTGCCTTGCAACGGATGAGTGTGGTT...GGAGGCTGAGGCAGGAGAATTGTTTAGTCCTGGAATAGATAGTAAAAGCCTGTC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000061350.13
ENSMUST00000100013.9
CDS-3UTR CAA 90 bp AGTGCCATTCTGACACAGCGTCAGAAAAGCTCAACAGTGCATGCTGCTGAGCACTCCAACATGCGCTTCTaGTTGTATTACAAACATCTG +
Preference number: 5 (lower is better)
Translates to: SAILTQRQKSSTVHAAEHSNMRF*LYYKHL
Trigger: CAGATGTTTGTAATACAACAAGAAGCGCATGTTGGA...GTGCTCAGCAGCATGCACTGTTGAGCTTTTCTGACGCTGTGTCAGAATGGCACT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000061350.13
ENSMUST00000100013.9
ENSMUST00000229503.2
CDS-3UTR CAA 90 bp AGTGCCATTCTGACACAGCGTCAGAAAAGCTCAACAGTGCATGCTGCTGAGCACCCTTGTTTGTCTCGATaGAATACAACTTTCCAAAGG +
Preference number: 5 (lower is better)
Translates to: SAILTQRQKSSTVHAAEHPCLSR*NTTFQR
Trigger: CCTTTGGAAAGTTGTATTCAATCGAGACAAACAAGG...GTGCTCAGCAGCATGCACTGTTGAGCTTTTCTGACGCTGTGTCAGAATGGCACT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000100013.9
ENSMUST00000229503.2
CDS TCA 90 bp TTTCCATCCTTTGGAGGTAATGCTTCAGCAATAATAACTTTATCCTaGGGTAGAATCATCCCACAGTCTCTGGCCACAGAGACAGCCGTC +
Preference number: 5 (lower is better)
Translates to: FPSFGGNASAIITLS*GRIIPQSLATETAV
Trigger: GACGGCTGTCTCTGTGGCCAGAGACTGTGGGATGATTCTACCTCAGGATAAAGTTATTATTGCTGAAGCATTACCTCCAAAGGATGGAAA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000061350.13
ENSMUST00000100013.9
CDS-3UTR CAA 90 bp GACAGGCTTTTACTATCTATTCCAGGACTAAACAATTCTCCTGCCTCAGCCTCCAAACAGCTCCATTTCTaGGTTTCCTGCAGTTGTAGG +
Preference number: 5 (lower is better)
Translates to: DRLLLSIPGLNNSPASASKQLHF*VSCSCR
Trigger: CCTACAACTGCAGGAAACCAAGAAATGGAGCTGTTT...GGAGGCTGAGGCAGGAGAATTGTTTAGTCCTGGAATAGATAGTAAAAGCCTGTC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000061350.13
ENSMUST00000100013.9
CDS-3UTR CAA 90 bp CAGCTCAAGAGGTCTAAGATGCATAGCTTCATAGAATCATTCACGGGACAATTGTCTCACCTAGTGTCCTaGCAACCACACTCATCCGTT +
Preference number: 5 (lower is better)
Translates to: QLKRSKMHSFIESFTGQLSHLVS*QPHSSV
Trigger: AACGGATGAGTGTGGTTGCAAGGACACTAGGTGAGA...CAATTGTCCCGTGAATGATTCTATGAAGCTATGCATCTTAGACCTCTTGAGCTG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000061350.13
ENSMUST00000100013.9
CDS-3UTR CAA 90 bp GACAGGCTTTTACTATCTATTCCAGGACTAAACAATTCTCCTGCCTCAGCCTCCTATGCCAGGTCAGCTTaGACTCCAATTTTCTGTGTG +
Preference number: 5 (lower is better)
Translates to: DRLLLSIPGLNNSPASASYARSA*TPIFCV
Trigger: CACACAGAAAATTGGAGTCAAAGCTGACCTGGCATA...GGAGGCTGAGGCAGGAGAATTGTTTAGTCCTGGAATAGATAGTAAAAGCCTGTC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000061350.13
ENSMUST00000100013.9
CDS-3UTR CAA 90 bp GTCAGAAAAGCTCAACAGTGCATGCTGCTGAGCACTGCTACTAGCACAGAGAGCCTTAGGAACAAGATCTaGAAAATGTTCCAGTATCAC +
Preference number: 5 (lower is better)
Translates to: VRKAQQCMLLSTATSTESLRNKI*KMFQYH
Trigger: GTGATACTGGAACATTTTCAAGATCTTGTTCCTAAG...GCTCTCTGTGCTAGTAGCAGTGCTCAGCAGCATGCACTGTTGAGCTTTTCTGAC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000061350.13
ENSMUST00000100013.9
CDS-3UTR CAA 90 bp CACAGCGTCAGAAAAGCTCAACAGTGCATGCTGCTGAGCACTGCTACTAGCACAATAGACACGAAGGCATaGATAAGAACAATGATAAGC +
Preference number: 5 (lower is better)
Translates to: HSVRKAQQCMLLSTATSTIDTKA*IRTMIS
Trigger: GCTTATCATTGTTCTTATCAATGCCTTCGTGTCTAT...TGTGCTAGTAGCAGTGCTCAGCAGCATGCACTGTTGAGCTTTTCTGACGCTGTG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000061350.13
ENSMUST00000100013.9
ENSMUST00000229503.2
CDS GCA 90 bp CTCATAAATAGCTGGAAGTTCAAACAGCTCCATTTCTTGGTTTCCTaGAGTTGTAGGTTCAGGAAGCAGTTGTTTGGAAGGACGAACCAC +
Preference number: 5 (lower is better)
Translates to: LINSWKFKQLHFLVS*SCRFRKQLFGRTNH
Trigger: GTGGTTCGTCCTTCCAAACAACTGCTTCCTGAACCTACAACTGCAGGAAACCAAGAAATGGAGCTGTTTGAACTTCCAGCTATTTATGAG
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000061350.13
ENSMUST00000100013.9
CDS CCA 90 bp GGAGGAGGAGAAAACCACCAGTACAAATCACTCCTACAAAAACCATaGCAAGCTTCCAGCGGCATAAGTTATAGCCATGTATCTCCATTT +
Preference number: 5 (lower is better)
Translates to: GGGENHQYKSLLQKP*QASSGISYSHVSPF
Trigger: AAATGGAGATACATGGCTATAACTTATGCCGCTGGAAGCTTGCCATGGTTTTTGTAGGAGTGATTTGTACTGGTGGTTTTCTCCTCCTCC
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000061350.13
ENSMUST00000100013.9
ENSMUST00000229616.2
CDS-3UTR CAA 90 bp ATGACTTACAGAAGACTCAGTCTACCTATGGCACTAAGCAGGACCCATGTCTGCCTCCATTTCATCTTCTaGACCCTTGTTGATAGTCTT +
Preference number: 5 (lower is better)
Translates to: MTYRRLSLPMALSRTHVCLHFIF*TLVDSL
Trigger: AAGACTATCAACAAGGGTCAAGAAGATGAAATGGAG...GCAGACATGGGTCCTGCTTAGTGCCATAGGTAGACTGAGTCTTCTGTAAGTCAT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000061350.13
ENSMUST00000100013.9
CDS-3UTR CAA 90 bp GACAGGCTTTTACTATCTATTCCAGGACTAAACAATTCTCCTGCCTCAGCCTCCCAACTTTTCCATCCTTaGGAGGTAATGCTTCAGCAA +
Preference number: 5 (lower is better)
Translates to: DRLLLSIPGLNNSPASASQLFHP*EVMLQQ
Trigger: TTGCTGAAGCATTACCTCCAAAGGATGGAAAAGTTG...GGAGGCTGAGGCAGGAGAATTGTTTAGTCCTGGAATAGATAGTAAAAGCCTGTC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000061350.13
ENSMUST00000100013.9
CDS-3UTR CAA 90 bp ATGACTTACAGAAGACTCAGTCTACCTATGGCACTAAGCAGGACCCATGTCTGCTCCAACATGCGCTTCTaGTTGTATTACAAACATCTG +
Preference number: 5 (lower is better)
Translates to: MTYRRLSLPMALSRTHVCSNMRF*LYYKHL
Trigger: CAGATGTTTGTAATACAACAAGAAGCGCATGTTGGA...GCAGACATGGGTCCTGCTTAGTGCCATAGGTAGACTGAGTCTTCTGTAAGTCAT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000061350.13
ENSMUST00000100013.9
CDS-3UTR CAA 90 bp GACAGGCTTTTACTATCTATTCCAGGACTAAACAATTCTCCTGCCTCAGCCTCCCGACACTCTCCTTGTTaGTCTCGATTGAATACAACT +
Preference number: 5 (lower is better)
Translates to: DRLLLSIPGLNNSPASASRHSPC*SRLNTT
Trigger: AGTTGTATTCAATCGAGACAAACAAGGAGAGTGTCG...GGAGGCTGAGGCAGGAGAATTGTTTAGTCCTGGAATAGATAGTAAAAGCCTGTC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000100013.9
CDS TCA 90 bp CTGATGATTCACTACACTGTGACAGGGAGTCTGTATAATGCCAATTaGTCTTGGCAACTTTTCCATCCTTTGGAGGTAATGCTTCAGCAA +
Preference number: 5 (lower is better)
Translates to: LMIHYTVTGSLYNAN*SWQLFHPLEVMLQQ
Trigger: TTGCTGAAGCATTACCTCCAAAGGATGGAAAAGTTGCCAAGATCAATTGGCATTATACAGACTCCCTGTCACAGTGTAGTGAATCATCAG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000061350.13
ENSMUST00000100013.9
CDS-3UTR CAA 90 bp GACAGGCTTTTACTATCTATTCCAGGACTAAACAATTCTCCTGCCTCAGCCTCCTGCATTCAAATTTGGTaGATTCTCCACAGGAAGAAA +
Preference number: 5 (lower is better)
Translates to: DRLLLSIPGLNNSPASASCIQIW*ILHRKK
Trigger: TTTCTTCCTGTGGAGAATCAACCAAATTTGAATGCA...GGAGGCTGAGGCAGGAGAATTGTTTAGTCCTGGAATAGATAGTAAAAGCCTGTC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000061350.13
ENSMUST00000100013.9
CDS-3UTR CAA 90 bp ACTATGAAGGATATCTCAGACAGCAAGCAGTGGAGCGCCTTACTGTCTAGAAAGTGCATTCAAATTTGGTaGATTCTCCACAGGAAGAAA +
Preference number: 5 (lower is better)
Translates to: TMKDISDSKQWSALLSRKCIQIW*ILHRKK
Trigger: TTTCTTCCTGTGGAGAATCAACCAAATTTGAATGCA...CTTTCTAGACAGTAAGGCGCTCCACTGCTTGCTGTCTGAGATATCCTTCATAGT
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000061350.13
ENSMUST00000100013.9
CDS-3UTR CAA 90 bp TCACTAGTGGCAACAGCAGTAATAGTGATCCTGAGACACATTTACTTTTTCTACTCAGGAAGCAGTTGTTaGGAAGGACGAACCACAGTA +
Preference number: 5 (lower is better)
Translates to: SLVATAVIVILRHIYFFYSGSSC*EGRTTV
Trigger: TACTGTGGTTCGTCCTTCCAAACAACTGCTTCCTGA...GTAGAAAAAGTAAATGTGTCTCAGGATCACTATTACTGCTGTTGCCACTAGTGA
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000061350.13
ENSMUST00000100013.9
CDS CCA 90 bp ACACAGCAGAAACAAGTAGGCATCTCTATAGAGTTTAAAGTCAGTTaGCTTGGGATACAGTATAGAACGAACAAGCTGTCCTTTGGAAGT +
Preference number: 5 (lower is better)
Translates to: TQQKQVGISIEFKVS*LGIQYRTNKLSFGS
Trigger: ACTTCCAAAGGACAGCTTGTTCGTTCTATACTGTATCCCAAGCCAACTGACTTTAAACTCTATAGAGATGCCTACTTGTTTCTGCTGTGT
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000061350.13
ENSMUST00000100013.9
CDS CCA 90 bp ACGAAGGCATTGATAAGAACAATGATAAGCATATATATGCGCCACTaGTATGGTACACACATAATCTCAAGAACCTGGTCAACAGAGGCA +
Preference number: 5 (lower is better)
Translates to: TKALIRTMISIYMRH*YGTHIISRTWSTEA
Trigger: TGCCTCTGTTGACCAGGTTCTTGAGATTATGTGTGTACCATACCAGTGGCGCATATATATGCTTATCATTGTTCTTATCAATGCCTTCGT
41% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000061350.13
ENSMUST00000100013.9
ENSMUST00000229503.2
CDS-3UTR CAA 90 bp TCACTAGTGGCAACAGCAGTAATAGTGATCCTGAGACACATTTACTTTTTCTACCTATCATGGGCAAGTTaGATTGGAATAGCCTCTGAG +
Preference number: 5 (lower is better)
Translates to: SLVATAVIVILRHIYFFYLSWAS*IGIASE
Trigger: CTCAGAGGCTATTCCAATCAAACTTGCCCATGATAG...GTAGAAAAAGTAAATGTGTCTCAGGATCACTATTACTGCTGTTGCCACTAGTGA
41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000061350.13
ENSMUST00000100013.9
CDS GCA 90 bp GACCATGACAGTTCGAATGTTGGCTTTATGCAAATCTTCAAGTACTaGAGGGGTTTCCTGCTTCAATTTGTTCTGCATTATAATCAATCC +
Preference number: 5 (lower is better)
Translates to: DHDSSNVGFMQIFKY*RGFLLQFVLHYNQS
Trigger: GGATTGATTATAATGCAGAACAAATTGAAGCAGGAAACCCCTGCAGTACTTGAAGATTTGCATAAAGCCAACATTCGAACTGTCATGGTC
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000061350.13
ENSMUST00000100013.9
CDS-3UTR CAA 90 bp CCCATTATTCAAAGGAGAGACATAGCAAGGTTAAGGTCAAACTCAAAACAAAAATCAGGAAGCAGTTGTTaGGAAGGACGAACCACAGTA +
Preference number: 5 (lower is better)
Translates to: PIIQRRDIARLRSNSKQKSGSSC*EGRTTV
Trigger: TACTGTGGTTCGTCCTTCCAAACAACTGCTTCCTGA...TTTTTGTTTTGAGTTTGACCTTAACCTTGCTATGTCTCTCCTTTGAATAATGGG
40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000061350.13
ENSMUST00000100013.9
CDS CCA 90 bp ATATATATGCGCCACTGGTATGGTACACACATAATCTCAAGAACCTaGTCAACAGAGGCAACTGGATGCAACATGATGAATAATATGAAA +
Preference number: 5 (lower is better)
Translates to: IYMRHWYGTHIISRT*STEATGCNMMNNMK
Trigger: TTTCATATTATTCATCATGTTGCATCCAGTTGCCTCTGTTGACCAGGTTCTTGAGATTATGTGTGTACCATACCAGTGGCGCATATATAT
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000061350.13
ENSMUST00000100013.9
ENSMUST00000229503.2
CDS GCA 90 bp CGAATGTTGGCTTTATGCAAATCTTCAAGTACTGCAGGGGTTTCCTaGTTCAATTTGTTCTGCATTATAATCAATCCCATAAAATCCATG +
Preference number: 5 (lower is better)
Translates to: RMLALCKSSSTAGVS*FNLFCIIINPIKSM
Trigger: CATGGATTTTATGGGATTGATTATAATGCAGAACAAATTGAAGCAGGAAACCCCTGCAGTACTTGAAGATTTGCATAAAGCCAACATTCG
38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000061350.13
ENSMUST00000100013.9
CDS GCA 90 bp TGCATTCAAATTTGGTTGATTCTCCACAGGAAGAAAGTGAATTTTTaGACAAAACCATACTCTAAATTCATCAGTTGTCCTGAGAAGCAC +
Preference number: 5 (lower is better)
Translates to: CIQIWLILHRKKVNF*TKPYSKFISCPEKH
Trigger: GTGCTTCTCAGGACAACTGATGAATTTAGAGTATGGTTTTGTGCAAAAATTCACTTTCTTCCTGTGGAGAATCAACCAAATTTGAATGCA
37% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000061350.13
ENSMUST00000100013.9
CDS-3UTR CAA 90 bp CCCATTATTCAAAGGAGAGACATAGCAAGGTTAAGGTCAAACTCAAAACAAAAACTCCATTTCATCTTCTaGACCCTTGTTGATAGTCTT +
Preference number: 5 (lower is better)
Translates to: PIIQRRDIARLRSNSKQKLHFIF*TLVDSL
Trigger: AAGACTATCAACAAGGGTCAAGAAGATGAAATGGAG...TTTTTGTTTTGAGTTTGACCTTAACCTTGCTATGTCTCTCCTTTGAATAATGGG
37% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000061350.13
ENSMUST00000100013.9
CDS-3UTR CAA 90 bp CCCATTATTCAAAGGAGAGACATAGCAAGGTTAAGGTCAAACTCAAAACAAAAATCCAACATGCGCTTCTaGTTGTATTACAAACATCTG +
Preference number: 5 (lower is better)
Translates to: PIIQRRDIARLRSNSKQKSNMRF*LYYKHL
Trigger: CAGATGTTTGTAATACAACAAGAAGCGCATGTTGGA...TTTTTGTTTTGAGTTTGACCTTAACCTTGCTATGTCTCTCCTTTGAATAATGGG
37% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000061350.13
ENSMUST00000100013.9
CDS-3UTR CAA 90 bp GAAAGAAACACATTATTTACCATGCCTTTGAAACTGTGCAGTACTTTCATCAACCTTAGGAACAAGATCTaGAAAATGTTCCAGTATCAC +
Preference number: 5 (lower is better)
Translates to: ERNTLFTMPLKLCSTFINLRNKI*KMFQYH
Trigger: GTGATACTGGAACATTTTCAAGATCTTGTTCCTAAG...GTTGATGAAAGTACTGCACAGTTTCAAAGGCATGGTAAATAATGTGTTTCTTTC
36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000061350.13
ENSMUST00000100013.9
CDS-3UTR CAA 90 bp CCCATTATTCAAAGGAGAGACATAGCAAGGTTAAGGTCAAACTCAAAACAAAAAATAGACACGAAGGCATaGATAAGAACAATGATAAGC +
Preference number: 5 (lower is better)
Translates to: PIIQRRDIARLRSNSKQKIDTKA*IRTMIS
Trigger: GCTTATCATTGTTCTTATCAATGCCTTCGTGTCTAT...TTTTTGTTTTGAGTTTGACCTTAACCTTGCTATGTCTCTCCTTTGAATAATGGG
36% GC, longest homopolymer 6 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000061350.13
ENSMUST00000100013.9
CDS TCA 72 bp CAAGACGGAGAAGAGGAGCGCCCCAGATATAAGGCCTaGAGGTGGTCTCTGTGCCACAAGCTCTTTCCAGGC +
Preference number: 6 (lower is better)
Translates to: QDGEEERPRYKA*RWSLCHKLFPG
Trigger: GCCTGGAAAGAGCTTGTGGCACAGAGACCACCTTCAGGCCTTATATCTGGGGCGCTCCTCTTCTCCGTCTTG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000061350.13
ENSMUST00000100013.9
CDS CAA 90 bp GGGCCCCCTTCATGTAGGCATCCATCCTCTTCTCACCTAGTGTCCTaGCAACCACACTCATCCGTTGCAAGGCAGAAGAAAATGGAAACT +
Preference number: 6 (lower is better)
Translates to: GPPSCRHPSSSHLVS*QPHSSVARQKKMET
Trigger: AGTTTCCATTTTCTTCTGCCTTGCAACGGATGAGTGTGGTTGCAAGGACACTAGGTGAGAAGAGGATGGATGCCTACATGAAGGGGGCCC
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000061350.13
ENSMUST00000100013.9
CDS GCA 72 bp ACCGCACATCCCAACAAAGTAGTCTACGTTCTGCAATaGCTCCACCAATTGTGTCTTCTGATCCGGTGCCAT +
Preference number: 6 (lower is better)
Translates to: TAHPNKVVYVLQ*LHQLCLLIRCH
Trigger: ATGGCACCGGATCAGAAGACACAATTGGTGGAGGCATTGCAGAACGTAGACTACTTTGTTGGGATGTGCGGT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000061350.13
ENSMUST00000100013.9
CDS GCA 72 bp GCCACCATGTGCCCTCTTCAAAGCACCACAATCATTTaGACCATCACCGCACATCCCAACAAAGTAGTCTAC +
Preference number: 6 (lower is better)
Translates to: ATMCPLQSTTII*TITAHPNKVVY
Trigger: GTAGACTACTTTGTTGGGATGTGCGGTGATGGTGCAAATGATTGTGGTGCTTTGAAGAGGGCACATGGTGGC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000061350.13
ENSMUST00000100013.9
CDS CAA 90 bp GCACATCCCAACAAAGTAGTCTACGTTCTGCAATGCCTCCACCAATaGTGTCTTCTGATCCGGTGCCATTCGAGCAAACACAGTACCATG +
Preference number: 6 (lower is better)
Translates to: AHPNKVVYVLQCLHQ*CLLIRCHSSKHSTM
Trigger: CATGGTACTGTGTTTGCTCGAATGGCACCGGATCAGAAGACACAATTGGTGGAGGCATTGCAGAACGTAGACTACTTTGTTGGGATGTGC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000061350.13
ENSMUST00000100013.9
CDS CAA 90 bp GCCACTCAGGATCAAAGCGGAGCTCCTGTGCTAAGTACATGTACTTaGCTTTTGGAGTTTTCTTTCTACAGCTCAGGGCCCAGGACAAAC +
Preference number: 6 (lower is better)
Translates to: ATQDQSGAPVLSTCT*LLEFSFYSSGPRTN
Trigger: GTTTGTCCTGGGCCCTGAGCTGTAGAAAGAAAACTCCAAAAGCAAAGTACATGTACTTAGCACAGGAGCTCCGCTTTGATCCTGAGTGGC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000061350.13
ENSMUST00000100013.9
ENSMUST00000229503.2
CDS CAA 90 bp GACTCCTGTGGTGGCTGTGTGGTGCTGAAACGACACTCTCCTTGTTaGTCTCGATTGAATACAACTTTCCAAAGGACCGTGTCAAGGAAG +
Preference number: 6 (lower is better)
Translates to: DSCGGCVVLKRHSPC*SRLNTTFQRTVSRK
Trigger: CTTCCTTGACACGGTCCTTTGGAAAGTTGTATTCAATCGAGACAAACAAGGAGAGTGTCGTTTCAGCACCACACAGCCACCACAGGAGTC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000100013.9
ENSMUST00000229503.2
CDS GCA 72 bp AGTTGTCCTGAGAAGCACCACTTCACAGTCTTTAACTaGAGCTCTAACACATGTGGCTTTCACTCGCCACTC +
Preference number: 6 (lower is better)
Translates to: SCPEKHHFTVFN*SSNTCGFHSPL
Trigger: GAGTGGCGAGTGAAAGCCACATGTGTTAGAGCTGCAGTTAAAGACTGTGAAGTGGTGCTTCTCAGGACAACT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000061350.13
ENSMUST00000100013.9
CDS GCA 72 bp CTGCAATGCCTCCACCAATTGTGTCTTCTGATCCGGTaGCATTCGAGCAAACACAGTACCATGCAACATCAA +
Preference number: 6 (lower is better)
Translates to: LQCLHQLCLLIR*HSSKHSTMQHQ
Trigger: TTGATGTTGCATGGTACTGTGTTTGCTCGAATGGCACCGGATCAGAAGACACAATTGGTGGAGGCATTGCAG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000061350.13
ENSMUST00000100013.9
CDS CAA 72 bp GGTGGCTGTGTGGTGCTGAAACGACACTCTCCTTGTTaGTCTCGATTGAATACAACTTTCCAAAGGACCGTG +
Preference number: 6 (lower is better)
Translates to: GGCVVLKRHSPC*SRLNTTFQRTV
Trigger: CACGGTCCTTTGGAAAGTTGTATTCAATCGAGACAAACAAGGAGAGTGTCGTTTCAGCACCACACAGCCACC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000100013.9
ENSMUST00000229503.2
CDS CAA 90 bp CCCCACCGATCCACTGACTCCTCCACCGTGATAGACACGAAGGCATaGATAAGAACAATGATAAGCATATATATGCGCCACTGGTATGGT +
Preference number: 6 (lower is better)
Translates to: PHRSTDSSTVIDTKA*IRTMISIYMRHWYG
Trigger: ACCATACCAGTGGCGCATATATATGCTTATCATTGTTCTTATCAATGCCTTCGTGTCTATCACGGTGGAGGAGTCAGTGGATCGGTGGGG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000061350.13
CDS CAA 90 bp ACAGCCGTCAACATGTTGTCTCCTGTGACCATGACAGTTCGAATGTaGGCTTTATGCAAATCTTCAAGTACTGCAGGGGTTTCCTGCTTC +
Preference number: 6 (lower is better)
Translates to: TAVNMLSPVTMTVRM*ALCKSSSTAGVSCF
Trigger: GAAGCAGGAAACCCCTGCAGTACTTGAAGATTTGCATAAAGCCAACATTCGAACTGTCATGGTCACAGGAGACAACATGTTGACGGCTGT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000061350.13
ENSMUST00000100013.9
CDS CAA 72 bp AACAAAGTAGTCTACGTTCTGCAATGCCTCCACCAATaGTGTCTTCTGATCCGGTGCCATTCGAGCAAACAC +
Preference number: 6 (lower is better)
Translates to: NKVVYVLQCLHQ*CLLIRCHSSKH
Trigger: GTGTTTGCTCGAATGGCACCGGATCAGAAGACACAATTGGTGGAGGCATTGCAGAACGTAGACTACTTTGTT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000061350.13
ENSMUST00000100013.9
CDS CAA 72 bp GATCAAAGCGGAGCTCCTGTGCTAAGTACATGTACTTaGCTTTTGGAGTTTTCTTTCTACAGCTCAGGGCCC +
Preference number: 6 (lower is better)
Translates to: DQSGAPVLSTCT*LLEFSFYSSGP
Trigger: GGGCCCTGAGCTGTAGAAAGAAAACTCCAAAAGCAAAGTACATGTACTTAGCACAGGAGCTCCGCTTTGATC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000061350.13
ENSMUST00000100013.9
ENSMUST00000229503.2
CDS CAA 72 bp CTGTGGTGGCTGTGTGGTGCTGAAACGACACTCTCCTaGTTTGTCTCGATTGAATACAACTTTCCAAAGGAC +
Preference number: 6 (lower is better)
Translates to: LWWLCGAETTLS*FVSIEYNFPKD
Trigger: GTCCTTTGGAAAGTTGTATTCAATCGAGACAAACAAGGAGAGTGTCGTTTCAGCACCACACAGCCACCACAG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000100013.9
ENSMUST00000229503.2
CDS TCA 72 bp TTGGAAGGACGAACCACAGTAGGCATGATCCGGTTATaGAGTGCTGTTTCTTCTTCAGTTGCTTCTTCCAGA +
Preference number: 6 (lower is better)
Translates to: LEGRTTVGMIRL*SAVSSSVASSR
Trigger: TCTGGAAGAAGCAACTGAAGAAGAAACAGCACTTCATAACCGGATCATGCCTACTGTGGTTCGTCCTTCCAA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000061350.13
ENSMUST00000100013.9
CDS GCA 72 bp AGCTGGAAGTTCAAACAGCTCCATTTCTTGGTTTCCTaGAGTTGTAGGTTCAGGAAGCAGTTGTTTGGAAGG +
Preference number: 6 (lower is better)
Translates to: SWKFKQLHFLVS*SCRFRKQLFGR
Trigger: CCTTCCAAACAACTGCTTCCTGAACCTACAACTGCAGGAAACCAAGAAATGGAGCTGTTTGAACTTCCAGCT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000061350.13
ENSMUST00000100013.9
CDS GCA 72 bp TCTCCTGTGACCATGACAGTTCGAATGTTGGCTTTATaGAAATCTTCAAGTACTGCAGGGGTTTCCTGCTTC +
Preference number: 6 (lower is better)
Translates to: SPVTMTVRMLAL*KSSSTAGVSCF
Trigger: GAAGCAGGAAACCCCTGCAGTACTTGAAGATTTGCATAAAGCCAACATTCGAACTGTCATGGTCACAGGAGA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000061350.13
ENSMUST00000100013.9
CDS CAA 72 bp GTGGTGCTGAAACGACACTCTCCTTGTTTGTCTCGATaGAATACAACTTTCCAAAGGACCGTGTCAAGGAAG +
Preference number: 6 (lower is better)
Translates to: VVLKRHSPCLSR*NTTFQRTVSRK
Trigger: CTTCCTTGACACGGTCCTTTGGAAAGTTGTATTCAATCGAGACAAACAAGGAGAGTGTCGTTTCAGCACCAC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000100013.9
ENSMUST00000229503.2
CDS CAA 90 bp ACCGTGTCAAGGAAGAAGCTCTCCACCGTGATAGACACGAAGGCATaGATAAGAACAATGATAAGCATATATATGCGCCACTGGTATGGT +
Preference number: 6 (lower is better)
Translates to: TVSRKKLSTVIDTKA*IRTMISIYMRHWYG
Trigger: ACCATACCAGTGGCGCATATATATGCTTATCATTGTTCTTATCAATGCCTTCGTGTCTATCACGGTGGAGAGCTTCTTCCTTGACACGGT
44% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000100013.9
ENSMUST00000229503.2
CDS CAA 72 bp TCCACTGACTCCTCCACCGTGATAGACACGAAGGCATaGATAAGAACAATGATAAGCATATATATGCGCCAC +
Preference number: 6 (lower is better)
Translates to: STDSSTVIDTKA*IRTMISIYMRH
Trigger: GTGGCGCATATATATGCTTATCATTGTTCTTATCAATGCCTTCGTGTCTATCACGGTGGAGGAGTCAGTGGA
44% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000061350.13
CDS TCA 72 bp TTTGGAGGTAATGCTTCAGCAATAATAACTTTATCCTaGGGTAGAATCATCCCACAGTCTCTGGCCACAGAG +
Preference number: 6 (lower is better)
Translates to: FGGNASAIITLS*GRIIPQSLATE
Trigger: CTCTGTGGCCAGAGACTGTGGGATGATTCTACCTCAGGATAAAGTTATTATTGCTGAAGCATTACCTCCAAA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000061350.13
ENSMUST00000100013.9
CDS CCA 72 bp GAAAACCACCAGTACAAATCACTCCTACAAAAACCATaGCAAGCTTCCAGCGGCATAAGTTATAGCCATGTA +
Preference number: 6 (lower is better)
Translates to: ENHQYKSLLQKP*QASSGISYSHV
Trigger: TACATGGCTATAACTTATGCCGCTGGAAGCTTGCCATGGTTTTTGTAGGAGTGATTTGTACTGGTGGTTTTC
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000061350.13
ENSMUST00000100013.9
ENSMUST00000229616.2
CDS CAA 72 bp AACATGTTGTCTCCTGTGACCATGACAGTTCGAATGTaGGCTTTATGCAAATCTTCAAGTACTGCAGGGGTT +
Preference number: 6 (lower is better)
Translates to: NMLSPVTMTVRM*ALCKSSSTAGV
Trigger: AACCCCTGCAGTACTTGAAGATTTGCATAAAGCCAACATTCGAACTGTCATGGTCACAGGAGACAACATGTT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000061350.13
ENSMUST00000100013.9
CDS CAA 72 bp GTCACCTCAAGATCCTCTAAACTATCATGGGCAAGTTaGATTGGAATAGCCTCTGAGTCAATGGCTGATGAT +
Preference number: 6 (lower is better)
Translates to: VTSRSSKLSWAS*IGIASESMADD
Trigger: ATCATCAGCCATTGACTCAGAGGCTATTCCAATCAAACTTGCCCATGATAGTTTAGAGGATCTTGAGGTGAC
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000061350.13
ENSMUST00000100013.9
CDS CAA 72 bp AGGAAGAAGCTCTCCACCGTGATAGACACGAAGGCATaGATAAGAACAATGATAAGCATATATATGCGCCAC +
Preference number: 6 (lower is better)
Translates to: RKKLSTVIDTKA*IRTMISIYMRH
Trigger: GTGGCGCATATATATGCTTATCATTGTTCTTATCAATGCCTTCGTGTCTATCACGGTGGAGAGCTTCTTCCT
43% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000100013.9
ENSMUST00000229503.2
CDS CAA 72 bp GGCTTGGGATACAGTATAGAACGAACAAGCTGTCCTTaGGAAGTACTAAATCCTGTTCTAACTACTATGGCT +
Preference number: 6 (lower is better)
Translates to: GLGYSIERTSCP*EVLNPVLTTMA
Trigger: AGCCATAGTAGTTAGAACAGGATTTAGTACTTCCAAAGGACAGCTTGTTCGTTCTATACTGTATCCCAAGCC
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000061350.13
ENSMUST00000100013.9
CDS CAA 90 bp AATTCCTATCTCATAAATAGCTGGAAGTTCAAACAGCTCCATTTCTaGGTTTCCTGCAGTTGTAGGTTCAGGAAGCAGTTGTTTGGAAGG +
Preference number: 6 (lower is better)
Translates to: NSYLINSWKFKQLHF*VSCSCRFRKQLFGR
Trigger: CCTTCCAAACAACTGCTTCCTGAACCTACAACTGCAGGAAACCAAGAAATGGAGCTGTTTGAACTTCCAGCTATTTATGAGATAGGAATT
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000061350.13
ENSMUST00000100013.9
CDS TCA 72 bp GTTCCAACATGCGCTTCTTGTTGTATTACAAACATCTaGATTTGGATCGCACACTTTATACTGCTTGACCCA +
Preference number: 6 (lower is better)
Translates to: VPTCASCCITNI*IWIAHFILLDP
Trigger: TGGGTCAAGCAGTATAAAGTGTGCGATCCAAATTCAGATGTTTGTAATACAACAAGAAGCGCATGTTGGAAC
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000061350.13
ENSMUST00000100013.9
ENSMUST00000229503.2
CDS CCA 72 bp AAACAAGTAGGCATCTCTATAGAGTTTAAAGTCAGTTaGCTTGGGATACAGTATAGAACGAACAAGCTGTCC +
Preference number: 6 (lower is better)
Translates to: KQVGISIEFKVS*LGIQYRTNKLS
Trigger: GGACAGCTTGTTCGTTCTATACTGTATCCCAAGCCAACTGACTTTAAACTCTATAGAGATGCCTACTTGTTT
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000061350.13
ENSMUST00000100013.9
CDS CAA 90 bp GTTCAGTCCCATTGTATAAGTGTGACGAGTTCCAACATGCGCTTCTaGTTGTATTACAAACATCTGAATTTGGATCGCACACTTTATACT +
Preference number: 6 (lower is better)
Translates to: VQSHCISVTSSNMRF*LYYKHLNLDRTLYT
Trigger: AGTATAAAGTGTGCGATCCAAATTCAGATGTTTGTAATACAACAAGAAGCGCATGTTGGAACTCGTCACACTTATACAATGGGACTGAAC
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000061350.13
ENSMUST00000100013.9
ENSMUST00000229503.2
CDS GCA 72 bp AGTTCGAATGTTGGCTTTATGCAAATCTTCAAGTACTaGAGGGGTTTCCTGCTTCAATTTGTTCTGCATTAT +
Preference number: 6 (lower is better)
Translates to: SSNVGFMQIFKY*RGFLLQFVLHY
Trigger: ATAATGCAGAACAAATTGAAGCAGGAAACCCCTGCAGTACTTGAAGATTTGCATAAAGCCAACATTCGAACT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000061350.13
ENSMUST00000100013.9
CDS CCA 72 bp AAGAACAATGATAAGCATATATATGCGCCACTGGTATaGTACACACATAATCTCAAGAACCTGGTCAACAGA +
Preference number: 6 (lower is better)
Translates to: KNNDKHIYAPLV*YTHNLKNLVNR
Trigger: TCTGTTGACCAGGTTCTTGAGATTATGTGTGTACCATACCAGTGGCGCATATATATGCTTATCATTGTTCTT
39% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000061350.13
ENSMUST00000100013.9
ENSMUST00000229503.2
CDS CAA 72 bp TGTATAAGTGTGACGAGTTCCAACATGCGCTTCTTGTaGTATTACAAACATCTGAATTTGGATCGCACACTT +
Preference number: 6 (lower is better)
Translates to: CISVTSSNMRFL*YYKHLNLDRTL
Trigger: AAGTGTGCGATCCAAATTCAGATGTTTGTAATACAACAAGAAGCGCATGTTGGAACTCGTCACACTTATACA
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000061350.13
ENSMUST00000100013.9
ENSMUST00000229503.2
CDS CAA 72 bp CATTGTATAAGTGTGACGAGTTCCAACATGCGCTTCTaGTTGTATTACAAACATCTGAATTTGGATCGCACA +
Preference number: 6 (lower is better)
Translates to: HCISVTSSNMRF*LYYKHLNLDRT
Trigger: TGTGCGATCCAAATTCAGATGTTTGTAATACAACAAGAAGCGCATGTTGGAACTCGTCACACTTATACAATG
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000061350.13
ENSMUST00000100013.9
ENSMUST00000229503.2
CDS TCA 72 bp ACAGTACCATGCAACATCAACTTAGGAACAAGATCTTaGAAATGTTCCAGTATCACCGAAAATGACTTTCCA +
Preference number: 6 (lower is better)
Translates to: TVPCNINLGTRS*KCSSITENDFP
Trigger: TGGAAAGTCATTTTCGGTGATACTGGAACATTTTCAAGATCTTGTTCCTAAGTTGATGTTGCATGGTACTGT
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000061350.13
ENSMUST00000100013.9
CDS GCA 72 bp GCTTTATGCAAATCTTCAAGTACTGCAGGGGTTTCCTaGTTCAATTTGTTCTGCATTATAATCAATCCCATA +
Preference number: 6 (lower is better)
Translates to: ALCKSSSTAGVS*FNLFCIIINPI
Trigger: TATGGGATTGATTATAATGCAGAACAAATTGAAGCAGGAAACCCCTGCAGTACTTGAAGATTTGCATAAAGC
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000061350.13
ENSMUST00000100013.9
CDS CCA 72 bp TTGATAAGAACAATGATAAGCATATATATGCGCCACTaGTATGGTACACACATAATCTCAAGAACCTGGTCA +
Preference number: 6 (lower is better)
Translates to: LIRTMISIYMRH*YGTHIISRTWS
Trigger: TGACCAGGTTCTTGAGATTATGTGTGTACCATACCAGTGGCGCATATATATGCTTATCATTGTTCTTATCAA
38% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000061350.13
ENSMUST00000100013.9
ENSMUST00000229503.2