RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for ATP10D (Mus musculus)

Ensembl gene IDs: ENSMUSG00000046808

Ensembl transcript IDs: ENSMUST00000094710.8, ENSMUST00000126664.8, ENSMUST00000169617.3

Found 262 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR TCA 90 bp TTCTTTGCCCTTCCCTACAAAGGCTACTTCAGCAGAAAGCTGAAATaGCAGAGAGTGACGTCAAACACCTTCAGTCGGGAACCAAAACCT +
Preference number: 1 (lower is better)
Translates to: FFALPYKGYFSRKLK*QRVTSNTFSREPKP
Trigger: AGGTTTTGGTTCCCGACTGAAGGTGTTTGACGTCACTCTCTGTCATTTCAGCTTTCTGCTGAAGTAGCCTTTGTAGGGAAGGGCAAAGAA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000094710.8
ENSMUST00000126664.8
3UTR GCA 90 bp AGCAGAAGGCAGCCTGGGATTGTTGAAAACACTAGCCTTCTTCTTTaGCCTTCCCTACAAAGGCTACTTCAGCAGAAAGCTGAAATGACA +
Preference number: 1 (lower is better)
Translates to: SRRQPGIVENTSLLL*PSLQRLLQQKAEMT
Trigger: TGTCATTTCAGCTTTCTGCTGAAGTAGCCTTTGTAGGGAAGGGCAAAGAAGAAGGCTAGTGTTTTCAACAATCCCAGGCTGCCTTCTGCT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000094710.8
ENSMUST00000126664.8
3UTR TCA 90 bp ATCTCAAGGAAGCAGAAGGCAGCTTCGTTTAGACACATGGTTTTGTaGCAGTTCCAGAAATCAGTCTATGTGAAAAGACCATTTAACAAC +
Preference number: 1 (lower is better)
Translates to: ISRKQKAASFRHMVL*QFQKSVYVKRPFNN
Trigger: GTTGTTAAATGGTCTTTTCACATAGACTGATTTCTGGAACTGTCACAAAACCATGTGTCTAAACGAAGCTGCCTTCTGCTTCCTTGAGAT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000094710.8
ENSMUST00000126664.8
3UTR GCA 90 bp AAAACAACACATTCTCCTGAATTAAATATTCCAGTTCCTAAACTCTaGTCTGGTCAAACACTATCCTTTGTTTACAAATGTGCTCACAGG +
Preference number: 1 (lower is better)
Translates to: KTTHSPELNIPVPKL*SGQTLSFVYKCAHR
Trigger: CCTGTGAGCACATTTGTAAACAAAGGATAGTGTTTGACCAGAGCAGAGTTTAGGAACTGGAATATTTAATTCAGGAGAATGTGTTGTTTT
37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000094710.8
ENSMUST00000126664.8
3UTR-3UTR TCA 90 bp AAATGGAGACAGCATCCATCCGTGATTTGTCACAGCAGAAACCTTGCTACAGACGACAGCATCCATCCGTaGTTTGTCACAGCAGAAACC +
Preference number: 2 (lower is better)
Translates to: KWRQHPSVICHSRNLATDDSIHP*FVTAET
Trigger: GGTTTCTGCTGTGACAAATCACGGATGGATGCTGTC...GTCTGTAGCAAGGTTTCTGCTGTGACAAATCACGGATGGATGCTGTCTCCATTT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000094710.8
ENSMUST00000126664.8
3UTR-3UTR GCA 90 bp GTATCAATTTCAACCCATATCTCATTCTGTGGAGGGCACAACACAGACAAACTCTTAGAACCCAGGAGCTaGTCACACACGGCCTGTAGG +
Preference number: 2 (lower is better)
Translates to: VSISTHISFCGGHNTDKLLEPRS*SHTACR
Trigger: CCTACAGGCCGTGTGTGAGCAGCTCCTGGGTTCTAA...GAGTTTGTCTGTGTTGTGCCCTCCACAGAATGAGATATGGGTTGAAATTGATAC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000094710.8
ENSMUST00000126664.8
3UTR-3UTR TCA 90 bp AAATGGAGACAGCATCCATCCGTGATTTGTCACAGCAGAAACCTTGCTACAGACGCACTGTTACAACTATaGACTCTCAAGCGGACTCTG +
Preference number: 2 (lower is better)
Translates to: KWRQHPSVICHSRNLATDALLQL*TLKRTL
Trigger: CAGAGTCCGCTTGAGAGTTCATAGTTGTAACAGTGC...GTCTGTAGCAAGGTTTCTGCTGTGACAAATCACGGATGGATGCTGTCTCCATTT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000094710.8
ENSMUST00000126664.8
3UTR-3UTR TCA 90 bp AAATGGAGACAGCATCCATCCGTGATTTGTCACAGCAGAAACCTTGCTACAGACACATCCTTCCAAACTTaGAGGATTGCCAGCAACTCT +
Preference number: 2 (lower is better)
Translates to: KWRQHPSVICHSRNLATDTSFQT*RIASNS
Trigger: AGAGTTGCTGGCAATCCTTCAAGTTTGGAAGGATGT...GTCTGTAGCAAGGTTTCTGCTGTGACAAATCACGGATGGATGCTGTCTCCATTT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000094710.8
ENSMUST00000126664.8
3UTR-3UTR TCA 90 bp AAATGGAGACAGCATCCATCCGTGATTTGTCACAGCAGAAACCTTGCTACAGACAGCAGAAAGCTGAAATaGCAGAGAGTGACGTCAAAC +
Preference number: 2 (lower is better)
Translates to: KWRQHPSVICHSRNLATDSRKLK*QRVTSN
Trigger: GTTTGACGTCACTCTCTGTCATTTCAGCTTTCTGCT...GTCTGTAGCAAGGTTTCTGCTGTGACAAATCACGGATGGATGCTGTCTCCATTT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000094710.8
ENSMUST00000126664.8
3UTR-3UTR TCA 90 bp TGGAGGGCACAACACAGACAAACTCTTGAGCACTGTTACAACTATGAACTCTCAACATCCTTCCAAACTTaGAGGATTGCCAGCAACTCT +
Preference number: 2 (lower is better)
Translates to: WRAQHRQTLEHCYNYELSTSFQT*RIASNS
Trigger: AGAGTTGCTGGCAATCCTTCAAGTTTGGAAGGATGT...TGAGAGTTCATAGTTGTAACAGTGCTCAAGAGTTTGTCTGTGTTGTGCCCTCCA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000094710.8
ENSMUST00000126664.8
3UTR-3UTR TCA 90 bp TCAATTTCAACCCATATCTCATTCTGTGGAGGGCACAACACAGACAAACTCTTGGCACTGTTACAACTATaGACTCTCAAGCGGACTCTG +
Preference number: 2 (lower is better)
Translates to: SISTHISFCGGHNTDKLLALLQL*TLKRTL
Trigger: CAGAGTCCGCTTGAGAGTTCATAGTTGTAACAGTGC...CAAGAGTTTGTCTGTGTTGTGCCCTCCACAGAATGAGATATGGGTTGAAATTGA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000094710.8
ENSMUST00000126664.8
3UTR-3UTR GCA 90 bp ATGGAGACAGCATCCATCCGTGATTTGTCACAGCAGAAACCTTGCTACAGACATCTAACTTCTGAGAGGTaGTCTTCTACATCCTTCCAA +
Preference number: 2 (lower is better)
Translates to: METASIRDLSQQKPCYRHLTSER*SSTSFQ
Trigger: TTGGAAGGATGTAGAAGAGCACCTCTCAGAAGTTAG...ATGTCTGTAGCAAGGTTTCTGCTGTGACAAATCACGGATGGATGCTGTCTCCAT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000094710.8
ENSMUST00000126664.8
3UTR-3UTR GCA 90 bp AAATGGAGACAGCATCCATCCGTGATTTGTCACAGCAGAAACCTTGCTACAGACCTAACTTCTGAGAGGTaGTCTTCTACATCCTTCCAA +
Preference number: 2 (lower is better)
Translates to: KWRQHPSVICHSRNLATDLTSER*SSTSFQ
Trigger: TTGGAAGGATGTAGAAGAGCACCTCTCAGAAGTTAG...GTCTGTAGCAAGGTTTCTGCTGTGACAAATCACGGATGGATGCTGTCTCCATTT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000094710.8
ENSMUST00000126664.8
3UTR-3UTR CCA 90 bp ATGGAGACAGCATCCATCCGTGATTTGTCACAGCAGAAACCTTGCTACAGACATGCATCAGGGGACCCATaGAGAATACTTAAATACCTA +
Preference number: 2 (lower is better)
Translates to: METASIRDLSQQKPCYRHASGDP*RILKYL
Trigger: TAGGTATTTAAGTATTCTCCATGGGTCCCCTGATGC...ATGTCTGTAGCAAGGTTTCTGCTGTGACAAATCACGGATGGATGCTGTCTCCAT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000126664.8
3UTR CAA 90 bp GTCACAGCAGAAACCTTGCTACAGACATCTCTACCCTTCAATATGTaGATTTTTCTAAGAGCCTCGGAGATTCCCACTGAGAATAACCTG +
Preference number: 2 (lower is better)
Translates to: VTAETLLQTSLPFNM*IFLRASEIPTENNL
Trigger: CAGGTTATTCTCAGTGGGAATCTCCGAGGCTCTTAGAAAAATCAACATATTGAAGGGTAGAGATGTCTGTAGCAAGGTTTCTGCTGTGAC
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000094710.8
ENSMUST00000126664.8
3UTR-3UTR TCA 90 bp GAGGTTCTTGGTTTTTCCATGCCAAGCAAAATGCTGACATCCCTTGTACAAAGCAGTAATCCTAACTTCTaGGAGGTGCTCTTCTACATC +
Preference number: 2 (lower is better)
Translates to: EVLGFSMPSKMLTSLVQSSNPNF*EVLFYI
Trigger: GATGTAGAAGAGCACCTCTCAGAAGTTAGGATTACT...GCTTTGTACAAGGGATGTCAGCATTTTGCTTGGCATGGAAAAACCAAGAACCTC
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000094710.8
ENSMUST00000126664.8
3UTR-3UTR GCA 90 bp TCAATTTCAACCCATATCTCATTCTGTGGAGGGCACAACACAGACAAACTCTTGACTAGCCTTCTTCTTTaGCCTTCCCTACAAAGGCTA +
Preference number: 2 (lower is better)
Translates to: SISTHISFCGGHNTDKLLTSLLL*PSLQRL
Trigger: TAGCCTTTGTAGGGAAGGGCAAAGAAGAAGGCTAGT...CAAGAGTTTGTCTGTGTTGTGCCCTCCACAGAATGAGATATGGGTTGAAATTGA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000094710.8
ENSMUST00000126664.8
3UTR-3UTR CCA 90 bp GACATCTCTACCCTTCAATATGTTGATTTTTCTAAGAGCCTCGGAGATTCCCACCCATATCTCATTCTGTaGAGGGCACAACACAGACAA +
Preference number: 2 (lower is better)
Translates to: DISTLQYVDFSKSLGDSHPYLIL*RAQHRQ
Trigger: TTGTCTGTGTTGTGCCCTCCACAGAATGAGATATGG...GTGGGAATCTCCGAGGCTCTTAGAAAAATCAACATATTGAAGGGTAGAGATGTC
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000094710.8
ENSMUST00000126664.8
3UTR-3UTR CCA 90 bp TGGAGGGCACAACACAGACAAACTCTTGAGCACTGTTACAACTATGAACTCTCACAAAACCTTCTCTCATaGGAAATAAAAGGCTCTTGG +
Preference number: 2 (lower is better)
Translates to: WRAQHRQTLEHCYNYELSQNLLS*EIKGSW
Trigger: CCAAGAGCCTTTTATTTCCCATGAGAGAAGGTTTTG...TGAGAGTTCATAGTTGTAACAGTGCTCAAGAGTTTGTCTGTGTTGTGCCCTCCA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000094710.8
ENSMUST00000126664.8
3UTR-3UTR GCA 90 bp AAATGGAGACAGCATCCATCCGTGATTTGTCACAGCAGAAACCTTGCTACAGACAAAGCATTTTTCAAATaGATGGTGAGGCTAATCTGT +
Preference number: 2 (lower is better)
Translates to: KWRQHPSVICHSRNLATDKAFFK*MVRLIC
Trigger: ACAGATTAGCCTCACCATGCATTTGAAAAATGCTTT...GTCTGTAGCAAGGTTTCTGCTGTGACAAATCACGGATGGATGCTGTCTCCATTT
41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000094710.8
ENSMUST00000126664.8
3UTR-3UTR CCA 90 bp GTATCAATTTCAACCCATATCTCATTCTGTGGAGGGCACAACACAGACAAACTCCAAAACCTTCTCTCATaGGAAATAAAAGGCTCTTGG +
Preference number: 2 (lower is better)
Translates to: VSISTHISFCGGHNTDKLQNLLS*EIKGSW
Trigger: CCAAGAGCCTTTTATTTCCCATGAGAGAAGGTTTTG...GAGTTTGTCTGTGTTGTGCCCTCCACAGAATGAGATATGGGTTGAAATTGATAC
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000094710.8
ENSMUST00000126664.8
3UTR-3UTR CCA 90 bp TCAATTTCAACCCATATCTCATTCTGTGGAGGGCACAACACAGACAAACTCTTGCTCTCAAGCGGACTCTaGAAGACTTTCAAAATGATT +
Preference number: 2 (lower is better)
Translates to: SISTHISFCGGHNTDKLLLSSGL*KTFKMI
Trigger: AATCATTTTGAAAGTCTTCCAGAGTCCGCTTGAGAG...CAAGAGTTTGTCTGTGTTGTGCCCTCCACAGAATGAGATATGGGTTGAAATTGA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000094710.8
ENSMUST00000126664.8
3UTR-3UTR TCA 90 bp ATGTTGATTTTTCTAAGAGCCTCGGAGATTCCCACTGAGAATAACCTGTATCAAAGTAATCCTAACTTCTaGGAGGTGCTCTTCTACATC +
Preference number: 2 (lower is better)
Translates to: MLIFLRASEIPTENNLYQSNPNF*EVLFYI
Trigger: GATGTAGAAGAGCACCTCTCAGAAGTTAGGATTACT...TTGATACAGGTTATTCTCAGTGGGAATCTCCGAGGCTCTTAGAAAAATCAACAT
40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000094710.8
ENSMUST00000126664.8
3UTR-3UTR GCA 90 bp ATTCTGTGGAGGGCACAACACAGACAAACTCTTGAGCACTGTTACAACTATGAAAAAGCATTTTTCAAATaGATGGTGAGGCTAATCTGT +
Preference number: 2 (lower is better)
Translates to: ILWRAQHRQTLEHCYNYEKAFFK*MVRLIC
Trigger: ACAGATTAGCCTCACCATGCATTTGAAAAATGCTTT...TTCATAGTTGTAACAGTGCTCAAGAGTTTGTCTGTGTTGTGCCCTCCACAGAAT
39% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000094710.8
ENSMUST00000126664.8
3UTR TCA 72 bp CCCAGGAGCTGCTCACACACGGCCTGTAGGCTCAGGTaGTTGTGTTTCATGGCCATTTGTCCGTTTCCTGGT +
Preference number: 3 (lower is better)
Translates to: PRSCSHTACRLR*LCFMAICPFPG
Trigger: ACCAGGAAACGGACAAATGGCCATGAAACACAATCACCTGAGCCTACAGGCCGTGTGTGAGCAGCTCCTGGG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000094710.8
ENSMUST00000126664.8
3UTR CCA 72 bp CACACACGGCCTGTAGGCTCAGGTGATTGTGTTTCATaGCCATTTGTCCGTTTCCTGGTTGACAACATCGGC +
Preference number: 3 (lower is better)
Translates to: HTRPVGSGDCVS*PFVRFLVDNIG
Trigger: GCCGATGTTGTCAACCAGGAAACGGACAAATGGCCATGAAACACAATCACCTGAGCCTACAGGCCGTGTGTG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000094710.8
ENSMUST00000126664.8
3UTR TCA 72 bp ACTTCTGAGAGGTGCTCTTCTACATCCTTCCAAACTTaGAGGATTGCCAGCAACTCTAAGCAGGGTGTCCTG +
Preference number: 3 (lower is better)
Translates to: TSERCSSTSFQT*RIASNSKQGVL
Trigger: CAGGACACCCTGCTTAGAGTTGCTGGCAATCCTTCAAGTTTGGAAGGATGTAGAAGAGCACCTCTCAGAAGT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000094710.8
ENSMUST00000126664.8
3UTR-3UTR CAA 90 bp CCTTCCCTACAAAGGCTACTTCAGCAGAAAGCTGAAATGACAGAGAGTGACGTCTCCAAACTTGAAGGATaGCCAGCAACTCTAAGCAGG +
Preference number: 3 (lower is better)
Translates to: PSLQRLLQQKAEMTESDVSKLEG*PATLSR
Trigger: CCTGCTTAGAGTTGCTGGCAATCCTTCAAGTTTGGA...GACGTCACTCTCTGTCATTTCAGCTTTCTGCTGAAGTAGCCTTTGTAGGGAAGG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000094710.8
ENSMUST00000126664.8
3UTR-3UTR CAA 90 bp AAATGGAGACAGCATCCATCCGTGATTTGTCACAGCAGAAACCTTGCTACAGACGGCAGCCTGGGATTGTaGAAAACACTAGCCTTCTTC +
Preference number: 3 (lower is better)
Translates to: KWRQHPSVICHSRNLATDGSLGL*KTLAFF
Trigger: GAAGAAGGCTAGTGTTTTCAACAATCCCAGGCTGCC...GTCTGTAGCAAGGTTTCTGCTGTGACAAATCACGGATGGATGCTGTCTCCATTT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000094710.8
ENSMUST00000126664.8
3UTR-3UTR CAA 90 bp AGGCAGCCTGGGATTGTTGAAAACACTAGCCTTCTTCTTTGCCCTTCCCTACAATACATCCTTCCAAACTaGAAGGATTGCCAGCAACTC +
Preference number: 3 (lower is better)
Translates to: RQPGIVENTSLLLCPSLQYILPN*KDCQQL
Trigger: GAGTTGCTGGCAATCCTTCAAGTTTGGAAGGATGTA...TTGTAGGGAAGGGCAAAGAAGAAGGCTAGTGTTTTCAACAATCCCAGGCTGCCT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000094710.8
ENSMUST00000126664.8
3UTR-3UTR CAA 90 bp TCATTCTGTGGAGGGCACAACACAGACAAACTCTTGAGCACTGTTACAACTATGTTATGTTCACTCCCATaGCATCAGGGGACCCATGGA +
Preference number: 3 (lower is better)
Translates to: SFCGGHNTDKLLSTVTTMLCSLP*HQGTHG
Trigger: TCCATGGGTCCCCTGATGCAATGGGAGTGAACATAA...CATAGTTGTAACAGTGCTCAAGAGTTTGTCTGTGTTGTGCCCTCCACAGAATGA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000126664.8
3UTR TCA 72 bp CTTCCCTACAAAGGCTACTTCAGCAGAAAGCTGAAATaGCAGAGAGTGACGTCAAACACCTTCAGTCGGGAA +
Preference number: 3 (lower is better)
Translates to: LPYKGYFSRKLK*QRVTSNTFSRE
Trigger: TTCCCGACTGAAGGTGTTTGACGTCACTCTCTGTCATTTCAGCTTTCTGCTGAAGTAGCCTTTGTAGGGAAG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000094710.8
ENSMUST00000126664.8
3UTR GCA 72 bp CAGCCTGGGATTGTTGAAAACACTAGCCTTCTTCTTTaGCCTTCCCTACAAAGGCTACTTCAGCAGAAAGCT +
Preference number: 3 (lower is better)
Translates to: QPGIVENTSLLL*PSLQRLLQQKA
Trigger: AGCTTTCTGCTGAAGTAGCCTTTGTAGGGAAGGGCAAAGAAGAAGGCTAGTGTTTTCAACAATCCCAGGCTG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000094710.8
ENSMUST00000126664.8
3UTR-3UTR CAA 90 bp AGGCTACTTCAGCAGAAAGCTGAAATGACAGAGAGTGACGTCAAACACCTTCAGTACATCCTTCCAAACTaGAAGGATTGCCAGCAACTC +
Preference number: 3 (lower is better)
Translates to: RLLQQKAEMTESDVKHLQYILPN*KDCQQL
Trigger: GAGTTGCTGGCAATCCTTCAAGTTTGGAAGGATGTA...CTGAAGGTGTTTGACGTCACTCTCTGTCATTTCAGCTTTCTGCTGAAGTAGCCT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000094710.8
ENSMUST00000126664.8
3UTR-3UTR CAA 90 bp GTATCAATTTCAACCCATATCTCATTCTGTGGAGGGCACAACACAGACAAACTCGAAGGCAGCCTGGGATaGTTGAAAACACTAGCCTTC +
Preference number: 3 (lower is better)
Translates to: VSISTHISFCGGHNTDKLEGSLG*LKTLAF
Trigger: GAAGGCTAGTGTTTTCAACAATCCCAGGCTGCCTTC...GAGTTTGTCTGTGTTGTGCCCTCCACAGAATGAGATATGGGTTGAAATTGATAC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000094710.8
ENSMUST00000126664.8
3UTR-3UTR CAA 90 bp CCTTCCCTACAAAGGCTACTTCAGCAGAAAGCTGAAATGACAGAGAGTGACGTCGGAAATAAAAGGCTCTaGGGAATTTGTCCTCAAAAA +
Preference number: 3 (lower is better)
Translates to: PSLQRLLQQKAEMTESDVGNKRL*GICPQK
Trigger: TTTTTGAGGACAAATTCCCAAGAGCCTTTTATTTCC...GACGTCACTCTCTGTCATTTCAGCTTTCTGCTGAAGTAGCCTTTGTAGGGAAGG
43% GC, longest homopolymer 5 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000094710.8
ENSMUST00000126664.8
3UTR-3UTR CAA 90 bp AGGCTACTTCAGCAGAAAGCTGAAATGACAGAGAGTGACGTCAAACACCTTCAGGTCAAACACTATCCTTaGTTTACAAATGTGCTCACA +
Preference number: 3 (lower is better)
Translates to: RLLQQKAEMTESDVKHLQVKHYP*FTNVLT
Trigger: TGTGAGCACATTTGTAAACAAAGGATAGTGTTTGAC...CTGAAGGTGTTTGACGTCACTCTCTGTCATTTCAGCTTTCTGCTGAAGTAGCCT
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000094710.8
ENSMUST00000126664.8
3UTR-3UTR CAA 90 bp TCATTCTGTGGAGGGCACAACACAGACAAACTCTTGAGCACTGTTACAACTATGGGAAATAAAAGGCTCTaGGGAATTTGTCCTCAAAAA +
Preference number: 3 (lower is better)
Translates to: SFCGGHNTDKLLSTVTTMGNKRL*GICPQK
Trigger: TTTTTGAGGACAAATTCCCAAGAGCCTTTTATTTCC...CATAGTTGTAACAGTGCTCAAGAGTTTGTCTGTGTTGTGCCCTCCACAGAATGA
41% GC, longest homopolymer 5 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000094710.8
ENSMUST00000126664.8
3UTR-3UTR CAA 90 bp AAACCTTCTCTCATGGGAAATAAAAGGCTCTTGGGAATTTGTCCTCAAAAATTATCCAAACTTGAAGGATaGCCAGCAACTCTAAGCAGG +
Preference number: 3 (lower is better)
Translates to: KPSLMGNKRLLGICPQKLSKLEG*PATLSR
Trigger: CCTGCTTAGAGTTGCTGGCAATCCTTCAAGTTTGGA...TAATTTTTGAGGACAAATTCCCAAGAGCCTTTTATTTCCCATGAGAGAAGGTTT
40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000094710.8
ENSMUST00000126664.8
3UTR GCA 72 bp CTGCTCTGGTCAAACACTATCCTTTGTTTACAAATGTaGTCACAGGTATACAATGATAGAGAGGTTCTTGGT +
Preference number: 3 (lower is better)
Translates to: LLWSNTILCLQM*SQVYNDREVLG
Trigger: ACCAAGAACCTCTCTATCATTGTATACCTGTGAGCACATTTGTAAACAAAGGATAGTGTTTGACCAGAGCAG
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000094710.8
ENSMUST00000126664.8
3UTR TCA 72 bp ACATGGTTTTGTGACAGTTCCAGAAATCAGTCTATGTaGAAAGACCATTTAACAACGATACCAGGAAGGTAC +
Preference number: 3 (lower is better)
Translates to: TWFCDSSRNQSM*KDHLTTIPGRY
Trigger: GTACCTTCCTGGTATCGTTGTTAAATGGTCTTTTCACATAGACTGATTTCTGGAACTGTCACAAAACCATGT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000094710.8
ENSMUST00000126664.8
3UTR GCA 72 bp CATTCTCCTGAATTAAATATTCCAGTTCCTAAACTCTaGTCTGGTCAAACACTATCCTTTGTTTACAAATGT +
Preference number: 3 (lower is better)
Translates to: HSPELNIPVPKL*SGQTLSFVYKC
Trigger: ACATTTGTAAACAAAGGATAGTGTTTGACCAGAGCAGAGTTTAGGAACTGGAATATTTAATTCAGGAGAATG
35% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000094710.8
ENSMUST00000126664.8
CDS-3UTR CCA 90 bp CATTTGTCCGTTTCCTGGTTGACAACATCGGCACATAGGGAGTCTCTGCGTCTAACTGTCCTGCAGCCCTaGGCTCTGGGTCTCGCCATG +
Preference number: 4 (lower is better)
Translates to: HLSVSWLTTSAHRESLRLTVLQP*ALGLAM
Trigger: CATGGCGAGACCCAGAGCCCAGGGCTGCAGGACAGT...TAGACGCAGAGACTCCCTATGTGCCGATGTTGTCAACCAGGAAACGGACAAATG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000126664.8
CDS-3UTR TCA 90 bp AGGCTACTTCAGCAGAAAGCTGAAATGACAGAGAGTGACGTCAAACACCTTCAGGTGCTCCCGGAGAGCTaGGCCGAGGGCTTTCCCAGA +
Preference number: 4 (lower is better)
Translates to: RLLQQKAEMTESDVKHLQVLPES*AEGFPR
Trigger: TCTGGGAAAGCCCTCGGCTCAGCTCTCCGGGAGCAC...CTGAAGGTGTTTGACGTCACTCTCTGTCATTTCAGCTTTCTGCTGAAGTAGCCT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000126664.8
CDS-3UTR GCA 90 bp AGGCTACTTCAGCAGAAAGCTGAAATGACAGAGAGTGACGTCAAACACCTTCAGCACTGGGAACTGTCCTaGAGCCCTGGGCTCTGGGTC +
Preference number: 4 (lower is better)
Translates to: RLLQQKAEMTESDVKHLQHWELS*SPGLWV
Trigger: GACCCAGAGCCCAGGGCTGCAGGACAGTTCCCAGTG...CTGAAGGTGTTTGACGTCACTCTCTGTCATTTCAGCTTTCTGCTGAAGTAGCCT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000126664.8
CDS-3UTR CCA 90 bp CATTTGTCCGTTTCCTGGTTGACAACATCGGCACATAGGGAGTCTCTGCGTCTACTCTCATCTTCACCCTaGGCTCTCCCATGGCTCAGC +
Preference number: 4 (lower is better)
Translates to: HLSVSWLTTSAHRESLRLLSSSP*ALPWLS
Trigger: GCTGAGCCATGGGAGAGCCCAGGGTGAAGATGAGAG...TAGACGCAGAGACTCCCTATGTGCCGATGTTGTCAACCAGGAAACGGACAAATG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000126664.8
CDS-3UTR CCA 90 bp AGGCAGCCTGGGATTGTTGAAAACACTAGCCTTCTTCTTTGCCCTTCCCTACAAGCTTTCCTGCAGGTCTaGGGGTCCTCGAGGACTTGC +
Preference number: 4 (lower is better)
Translates to: RQPGIVENTSLLLCPSLQAFLQV*GSSRTC
Trigger: GCAAGTCCTCGAGGACCCCCAGACCTGCAGGAAAGC...TTGTAGGGAAGGGCAAAGAAGAAGGCTAGTGTTTTCAACAATCCCAGGCTGCCT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000126664.8
CDS-3UTR CCA 90 bp CATTTGTCCGTTTCCTGGTTGACAACATCGGCACATAGGGAGTCTCTGCGTCTACCGCTCATCCCAGCATaGTGTTACCTCGGATCCCAA +
Preference number: 4 (lower is better)
Translates to: HLSVSWLTTSAHRESLRLPLIPA*CYLGSQ
Trigger: TTGGGATCCGAGGTAACACCATGCTGGGATGAGCGG...TAGACGCAGAGACTCCCTATGTGCCGATGTTGTCAACCAGGAAACGGACAAATG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000126664.8
CDS-3UTR GCA 90 bp CATTTGTCCGTTTCCTGGTTGACAACATCGGCACATAGGGAGTCTCTGCGTCTACCTCGGATCCCAAAGTaGCAAAAGAGAACGGAGCAG +
Preference number: 4 (lower is better)
Translates to: HLSVSWLTTSAHRESLRLPRIPK*QKRTEQ
Trigger: CTGCTCCGTTCTCTTTTGGCACTTTGGGATCCGAGG...TAGACGCAGAGACTCCCTATGTGCCGATGTTGTCAACCAGGAAACGGACAAATG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000126664.8
CDS-3UTR GCA 90 bp GTATCAATTTCAACCCATATCTCATTCTGTGGAGGGCACAACACAGACAAACTCGACGCGGTGCTTTCCTaGAGGTCTGGGGGTCCTCGA +
Preference number: 4 (lower is better)
Translates to: VSISTHISFCGGHNTDKLDAVLS*RSGGPR
Trigger: TCGAGGACCCCCAGACCTGCAGGAAAGCACCGCGTC...GAGTTTGTCTGTGTTGTGCCCTCCACAGAATGAGATATGGGTTGAAATTGATAC
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000126664.8
CDS-3UTR GCA 90 bp AGGCTACTTCAGCAGAAAGCTGAAATGACAGAGAGTGACGTCAAACACCTTCAGGGAATAACGACGCGGTaGTTTCCTGCAGGTCTGGGG +
Preference number: 4 (lower is better)
Translates to: RLLQQKAEMTESDVKHLQGITTR*FPAGLG
Trigger: CCCCAGACCTGCAGGAAAGCACCGCGTCGTTATTCC...CTGAAGGTGTTTGACGTCACTCTCTGTCATTTCAGCTTTCTGCTGAAGTAGCCT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000126664.8
CDS-3UTR GCA 90 bp AGGCAGCCTGGGATTGTTGAAAACACTAGCCTTCTTCTTTGCCCTTCCCTACAAGCATACTCGTCCAGGTaGCTCTGCGTTCTCTCCCTT +
Preference number: 4 (lower is better)
Translates to: RQPGIVENTSLLLCPSLQAYSSR*LCVLSL
Trigger: AAGGGAGAGAACGCAGAGGCACCTGGACGAGTATGC...TTGTAGGGAAGGGCAAAGAAGAAGGCTAGTGTTTTCAACAATCCCAGGCTGCCT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000126664.8
CDS-3UTR TCA 90 bp CATTTGTCCGTTTCCTGGTTGACAACATCGGCACATAGGGAGTCTCTGCGTCTAAGGGTGGGTTGCAAGTaGCACATAAGGCTCCAAAAG +
Preference number: 4 (lower is better)
Translates to: HLSVSWLTTSAHRESLRLRVGCK*HIRLQK
Trigger: CTTTTGGAGCCTTATGTGTCACTTGCAACCCACCCT...TAGACGCAGAGACTCCCTATGTGCCGATGTTGTCAACCAGGAAACGGACAAATG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000094710.8
ENSMUST00000126664.8
CDS-3UTR TCA 90 bp GACATCTCTACCCTTCAATATGTTGATTTTTCTAAGAGCCTCGGAGATTCCCACCAGCCTCTGTGTTTCTaGTGGTGCACCCGCGGAGCA +
Preference number: 4 (lower is better)
Translates to: DISTLQYVDFSKSLGDSHQPLCF*WCTRGA
Trigger: TGCTCCGCGGGTGCACCATCAGAAACACAGAGGCTG...GTGGGAATCTCCGAGGCTCTTAGAAAAATCAACATATTGAAGGGTAGAGATGTC
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000126664.8
CDS-3UTR TCA 90 bp CATTTGTCCGTTTCCTGGTTGACAACATCGGCACATAGGGAGTCTCTGCGTCTAGGACCTGCAGCAAGATaGTCATGGTCCAGAACACAT +
Preference number: 4 (lower is better)
Translates to: HLSVSWLTTSAHRESLRLGPAAR*SWSRTH
Trigger: ATGTGTTCTGGACCATGATCATCTTGCTGCAGGTCC...TAGACGCAGAGACTCCCTATGTGCCGATGTTGTCAACCAGGAAACGGACAAATG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000126664.8
CDS-3UTR TCA 90 bp AGGCAGCCTGGGATTGTTGAAAACACTAGCCTTCTTCTTTGCCCTTCCCTACAAAGTCCAGTGAGCAGCTaGGGGGTAAGCTGGCTAAAT +
Preference number: 4 (lower is better)
Translates to: RQPGIVENTSLLLCPSLQSPVSS*GVSWLN
Trigger: ATTTAGCCAGCTTACCCCTCAGCTGCTCACTGGACT...TTGTAGGGAAGGGCAAAGAAGAAGGCTAGTGTTTTCAACAATCCCAGGCTGCCT
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000126664.8
CDS-3UTR TCA 90 bp AGGCAGCCTGGGATTGTTGAAAACACTAGCCTTCTTCTTTGCCCTTCCCTACAAGGGGATTCCCAAAGGTaGAGATGTCAATGTCAGAGC +
Preference number: 4 (lower is better)
Translates to: RQPGIVENTSLLLCPSLQGDSQR*RCQCQS
Trigger: GCTCTGACATTGACATCTTCACCTTTGGGAATCCCC...TTGTAGGGAAGGGCAAAGAAGAAGGCTAGTGTTTTCAACAATCCCAGGCTGCCT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000094710.8
ENSMUST00000126664.8
CDS-3UTR TCA 90 bp ATGGAGACAGCATCCATCCGTGATTTGTCACAGCAGAAACCTTGCTACAGACATTCAGCATCCAGATCTTaGTGCCAGCTTGGTGAAGGG +
Preference number: 4 (lower is better)
Translates to: METASIRDLSQQKPCYRHSASRS*CQLGEG
Trigger: CCCTTCACCAAGCTGGCATCAAGATCTGGATGCTGA...ATGTCTGTAGCAAGGTTTCTGCTGTGACAAATCACGGATGGATGCTGTCTCCAT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000126664.8
CDS-3UTR TCA 90 bp CGTGATTTGTCACAGCAGAAACCTTGCTACAGACATCTCTACCCTTCAATATGTGCCTGCATGCCTTCTTaGCCTGAGACACCGATCCCA +
Preference number: 4 (lower is better)
Translates to: RDLSQQKPCYRHLYPSICACMPS*PETPIP
Trigger: TGGGATCGGTGTCTCAGGTCAAGAAGGCATGCAGGC...ACATATTGAAGGGTAGAGATGTCTGTAGCAAGGTTTCTGCTGTGACAAATCACG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000126664.8
CDS-3UTR GCA 90 bp CAAATGTGCTCACAGGTATACAATGATAGAGAGGTTCTTGGTTTTTCCATGCCAGCAGCAGCTCAGTCATaGCCAAGACGCAGGGAGACC +
Preference number: 4 (lower is better)
Translates to: QMCSQVYNDREVLGFSMPAAAQS*PRRRET
Trigger: GGTCTCCCTGCGTCTTGGGCATGACTGAGCTGCTGC...TGGCATGGAAAAACCAAGAACCTCTCTATCATTGTATACCTGTGAGCACATTTG
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000126664.8
CDS-3UTR GCA 90 bp CCTTCCCTACAAAGGCTACTTCAGCAGAAAGCTGAAATGACAGAGAGTGACGTCGAGAGTCCAATCTTTTaGCGAGGTTGGTTCGGTGCA +
Preference number: 4 (lower is better)
Translates to: PSLQRLLQQKAEMTESDVESPIF*RGWFGA
Trigger: TGCACCGAACCAACCTCGGCAAAAGATTGGACTCTC...GACGTCACTCTCTGTCATTTCAGCTTTCTGCTGAAGTAGCCTTTGTAGGGAAGG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000126664.8
CDS-3UTR CCA 90 bp AGGCAGCCTGGGATTGTTGAAAACACTAGCCTTCTTCTTTGCCCTTCCCTACAAATCTTTTGCCGAGGTTaGTTCGGTGCAGAAACCACC +
Preference number: 4 (lower is better)
Translates to: RQPGIVENTSLLLCPSLQIFCRG*FGAETT
Trigger: GGTGGTTTCTGCACCGAACCAACCTCGGCAAAAGAT...TTGTAGGGAAGGGCAAAGAAGAAGGCTAGTGTTTTCAACAATCCCAGGCTGCCT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000126664.8
CDS-3UTR TCA 90 bp AGGCTACTTCAGCAGAAAGCTGAAATGACAGAGAGTGACGTCAAACACCTTCAGGGGGATTCCCAAAGGTaGAGATGTCAATGTCAGAGC +
Preference number: 4 (lower is better)
Translates to: RLLQQKAEMTESDVKHLQGDSQR*RCQCQS
Trigger: GCTCTGACATTGACATCTTCACCTTTGGGAATCCCC...CTGAAGGTGTTTGACGTCACTCTCTGTCATTTCAGCTTTCTGCTGAAGTAGCCT
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000094710.8
ENSMUST00000126664.8
CDS-3UTR TCA 90 bp CCTTCCCTACAAAGGCTACTTCAGCAGAAAGCTGAAATGACAGAGAGTGACGTCAGTAGACACTGTTGCTaGCTTCATTGCAAGGACAGC +
Preference number: 4 (lower is better)
Translates to: PSLQRLLQQKAEMTESDVSRHCC*LHCKDS
Trigger: GCTGTCCTTGCAATGAAGTCAGCAACAGTGTCTACT...GACGTCACTCTCTGTCATTTCAGCTTTCTGCTGAAGTAGCCTTTGTAGGGAAGG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000094710.8
ENSMUST00000126664.8
CDS-3UTR TCA 90 bp AGGCTACTTCAGCAGAAAGCTGAAATGACAGAGAGTGACGTCAAACACCTTCAGCCAGAGGCAGCATGGTaGTTTCCTTTTGGAAGGCTT +
Preference number: 4 (lower is better)
Translates to: RLLQQKAEMTESDVKHLQPEAAW*FPFGRL
Trigger: AAGCCTTCCAAAAGGAAATCACCATGCTGCCTCTGG...CTGAAGGTGTTTGACGTCACTCTCTGTCATTTCAGCTTTCTGCTGAAGTAGCCT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000126664.8
CDS-3UTR TCA 90 bp ATTCTGTGGAGGGCACAACACAGACAAACTCTTGAGCACTGTTACAACTATGAACTCAGCCATATGCCGTaGCCCAGTGCACCAGTTAAG +
Preference number: 4 (lower is better)
Translates to: ILWRAQHRQTLEHCYNYELSHMP*PSAPVK
Trigger: CTTAACTGGTGCACTGGGTCACGGCATATGGCTGAG...TTCATAGTTGTAACAGTGCTCAAGAGTTTGTCTGTGTTGTGCCCTCCACAGAAT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000126664.8
CDS-3UTR TCA 90 bp ATGTTGATTTTTCTAAGAGCCTCGGAGATTCCCACTGAGAATAACCTGTATCAATCCAGTCAGCACGGGTaGGATGACACGTCCATCCGG +
Preference number: 4 (lower is better)
Translates to: MLIFLRASEIPTENNLYQSSQHG*DDTSIR
Trigger: CCGGATGGACGTGTCATCTCACCCGTGCTGACTGGA...TTGATACAGGTTATTCTCAGTGGGAATCTCCGAGGCTCTTAGAAAAATCAACAT
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000126664.8
CDS-3UTR GCA 90 bp AAATGGAGACAGCATCCATCCGTGATTTGTCACAGCAGAAACCTTGCTACAGACCTGCAGGAGGGTCTCTaGCGAAACATCTTTCTCCAA +
Preference number: 4 (lower is better)
Translates to: KWRQHPSVICHSRNLATDLQEGL*RNIFLQ
Trigger: TTGGAGAAAGATGTTTCGGCAGAGACCCTCCTGCAG...GTCTGTAGCAAGGTTTCTGCTGTGACAAATCACGGATGGATGCTGTCTCCATTT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000094710.8
ENSMUST00000126664.8
CDS-3UTR GCA 90 bp CCAAAACCTTCTCTCATGGGAAATAAAAGGCTCTTGGGAATTTGTCCTCAAAAATTCCTACAGCAGAGGTaGTCCCGGAGAGCTGAGCCG +
Preference number: 4 (lower is better)
Translates to: PKPSLMGNKRLLGICPQKFLQQR*SRRAEP
Trigger: CGGCTCAGCTCTCCGGGAGCACCTCTGCTGTAGGAA...TTTTTGAGGACAAATTCCCAAGAGCCTTTTATTTCCCATGAGAGAAGGTTTTGG
48% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000126664.8
CDS-3UTR GCA 90 bp ATTCTGTGGAGGGCACAACACAGACAAACTCTTGAGCACTGTTACAACTATGAACTTTGCAGACTCTCCTaGAGGGCAAACTCCAGGGTC +
Preference number: 4 (lower is better)
Translates to: ILWRAQHRQTLEHCYNYELCRLS*RANSRV
Trigger: GACCCTGGAGTTTGCCCTGCAGGAGAGTCTGCAAAG...TTCATAGTTGTAACAGTGCTCAAGAGTTTGTCTGTGTTGTGCCCTCCACAGAAT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000126664.8
CDS-3UTR GCA 90 bp TCATTCTGTGGAGGGCACAACACAGACAAACTCTTGAGCACTGTTACAACTATGTCAAGGAACTGCCTTTaGAGACTCTCCTGCAGGGCA +
Preference number: 4 (lower is better)
Translates to: SFCGGHNTDKLLSTVTTMSRNCL*RLSCRA
Trigger: TGCCCTGCAGGAGAGTCTGCAAAGGCAGTTCCTTGA...CATAGTTGTAACAGTGCTCAAGAGTTTGTCTGTGTTGTGCCCTCCACAGAATGA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000126664.8
CDS-3UTR GCA 90 bp GAGGTTCTTGGTTTTTCCATGCCAAGCAAAATGCTGACATCCCTTGTACAAAGCGTCAGCTCAAGGAACTaGCTTTGCAGACTCTCCTGC +
Preference number: 4 (lower is better)
Translates to: EVLGFSMPSKMLTSLVQSVSSRN*LCRLSC
Trigger: GCAGGAGAGTCTGCAAAGGCAGTTCCTTGAGCTGAC...GCTTTGTACAAGGGATGTCAGCATTTTGCTTGGCATGGAAAAACCAAGAACCTC
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000126664.8
CDS-3UTR CCA 90 bp AGGCAGCCTGGGATTGTTGAAAACACTAGCCTTCTTCTTTGCCCTTCCCTACAAACCGTGACCAGCATGTaGATCCAAGTCAAACTCTTG +
Preference number: 4 (lower is better)
Translates to: RQPGIVENTSLLLCPSLQTVTSM*IQVKLL
Trigger: CAAGAGTTTGACTTGGATCCACATGCTGGTCACGGT...TTGTAGGGAAGGGCAAAGAAGAAGGCTAGTGTTTTCAACAATCCCAGGCTGCCT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000094710.8
ENSMUST00000126664.8
CDS-3UTR CCA 90 bp TGGAGGGCACAACACAGACAAACTCTTGAGCACTGTTACAACTATGAACTCTCATGGCACCGTCACCAATaGCTAGGGTCATCACATGGA +
Preference number: 4 (lower is better)
Translates to: WRAQHRQTLEHCYNYELSWHRHQ*LGSSHG
Trigger: TCCATGTGATGACCCTAGCCATTGGTGACGGTGCCA...TGAGAGTTCATAGTTGTAACAGTGCTCAAGAGTTTGTCTGTGTTGTGCCCTCCA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000126664.8
CDS-3UTR TCA 90 bp TCATTCTGTGGAGGGCACAACACAGACAAACTCTTGAGCACTGTTACAACTATGAGCCTCGGAATCGGCTaGGGTCATTGTTTGGACTTT +
Preference number: 4 (lower is better)
Translates to: SFCGGHNTDKLLSTVTTMSLGIG*GHCLDF
Trigger: AAAGTCCAAACAATGACCTCAGCCGATTCCGAGGCT...CATAGTTGTAACAGTGCTCAAGAGTTTGTCTGTGTTGTGCCCTCCACAGAATGA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000126664.8
CDS-3UTR TCA 90 bp ATGGAGACAGCATCCATCCGTGATTTGTCACAGCAGAAACCTTGCTACAGACATCACCAGTTAAGCACATaGCAATCAGAAGCAGGACAC +
Preference number: 4 (lower is better)
Translates to: METASIRDLSQQKPCYRHHQLST*QSEAGH
Trigger: GTGTCCTGCTTCTGATTGTCATGTGCTTAACTGGTG...ATGTCTGTAGCAAGGTTTCTGCTGTGACAAATCACGGATGGATGCTGTCTCCAT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000126664.8
CDS-3UTR TCA 90 bp GACATCTCTACCCTTCAATATGTTGATTTTTCTAAGAGCCTCGGAGATTCCCACCATGCCTTCTTGACCTaGGACACCGATCCCAATGTC +
Preference number: 4 (lower is better)
Translates to: DISTLQYVDFSKSLGDSHHAFLT*DTDPNV
Trigger: GACATTGGGATCGGTGTCTCAGGTCAAGAAGGCATG...GTGGGAATCTCCGAGGCTCTTAGAAAAATCAACATATTGAAGGGTAGAGATGTC
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000126664.8
CDS-3UTR GCA 90 bp CATTTGTCCGTTTCCTGGTTGACAACATCGGCACATAGGGAGTCTCTGCGTCTATCCAAGTCAAACTCTTaGTTTCAATCACCAGGTGGA +
Preference number: 4 (lower is better)
Translates to: HLSVSWLTTSAHRESLRLSKSNS*FQSPGG
Trigger: TCCACCTGGTGATTGAAAGCAAGAGTTTGACTTGGA...TAGACGCAGAGACTCCCTATGTGCCGATGTTGTCAACCAGGAAACGGACAAATG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000094710.8
ENSMUST00000126664.8
CDS-3UTR GCA 90 bp TCAATTTCAACCCATATCTCATTCTGTGGAGGGCACAACACAGACAAACTCTTGCGCCGAGAGTGTCTGTaGATTCCTCCTCTTCAGAGA +
Preference number: 4 (lower is better)
Translates to: SISTHISFCGGHNTDKLLRRECL*IPPLQR
Trigger: TCTCTGAAGAGGAGGAATGCACAGACACTCTCGGCG...CAAGAGTTTGTCTGTGTTGTGCCCTCCACAGAATGAGATATGGGTTGAAATTGA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000126664.8
CDS-3UTR CCA 90 bp AGGCAGCCTGGGATTGTTGAAAACACTAGCCTTCTTCTTTGCCCTTCCCTACAATGCCATCTGGGTCTGTaGAAAAGAGTAAGACCATGT +
Preference number: 4 (lower is better)
Translates to: RQPGIVENTSLLLCPSLQCHLGL*KRVRPC
Trigger: ACATGGTCTTACTCTTTTCCACAGACCCAGATGGCA...TTGTAGGGAAGGGCAAAGAAGAAGGCTAGTGTTTTCAACAATCCCAGGCTGCCT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000126664.8
CDS-3UTR CCA 90 bp ATGGAGACAGCATCCATCCGTGATTTGTCACAGCAGAAACCTTGCTACAGACATACACATAGAGAGAAATaGGGATCAGGACCTGCAGCA +
Preference number: 4 (lower is better)
Translates to: METASIRDLSQQKPCYRHTHREK*GSGPAA
Trigger: TGCTGCAGGTCCTGATCCCCATTTCTCTCTATGTGT...ATGTCTGTAGCAAGGTTTCTGCTGTGACAAATCACGGATGGATGCTGTCTCCAT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000126664.8
CDS-3UTR CCA 90 bp ATTCTGTGGAGGGCACAACACAGACAAACTCTTGAGCACTGTTACAACTATGAATGCAACGGTAAGCTCTaGCGGCATACACCAAAGCTG +
Preference number: 4 (lower is better)
Translates to: ILWRAQHRQTLEHCYNYECNGKL*RHTPKL
Trigger: CAGCTTTGGTGTATGCCGCCAGAGCTTACCGTTGCA...TTCATAGTTGTAACAGTGCTCAAGAGTTTGTCTGTGTTGTGCCCTCCACAGAAT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000126664.8
CDS-3UTR TCA 90 bp TGGAGGGCACAACACAGACAAACTCTTGAGCACTGTTACAACTATGAACTCTCAAGTAGACACTGTTGCTaGCTTCATTGCAAGGACAGC +
Preference number: 4 (lower is better)
Translates to: WRAQHRQTLEHCYNYELSSRHCC*LHCKDS
Trigger: GCTGTCCTTGCAATGAAGTCAGCAACAGTGTCTACT...TGAGAGTTCATAGTTGTAACAGTGCTCAAGAGTTTGTCTGTGTTGTGCCCTCCA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000094710.8
ENSMUST00000126664.8
CDS-3UTR TCA 90 bp CTCATTCTGTGGAGGGCACAACACAGACAAACTCTTGAGCACTGTTACAACTATTTCAGGGCTCGGCACTaGATGGTAGAATCCATTTTC +
Preference number: 4 (lower is better)
Translates to: LILWRAQHRQTLEHCYNYFRARH*MVESIF
Trigger: GAAAATGGATTCTACCATTCAGTGCCGAGCCCTGAA...ATAGTTGTAACAGTGCTCAAGAGTTTGTCTGTGTTGTGCCCTCCACAGAATGAG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000126664.8
CDS-3UTR TCA 90 bp CTTTGTTTACAAATGTGCTCACAGGTATACAATGATAGAGAGGTTCTTGGTTTTGCCCAAGGTCCTCAGTaGTGTTCAGGGCTCGGCACT +
Preference number: 4 (lower is better)
Translates to: LCLQMCSQVYNDREVLGFAQGPQ*CSGLGT
Trigger: AGTGCCGAGCCCTGAACATCACTGAGGACCTTGGGC...AAAACCAAGAACCTCTCTATCATTGTATACCTGTGAGCACATTTGTAAACAAAG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000126664.8
CDS-3UTR TCA 90 bp ATTCTGTGGAGGGCACAACACAGACAAACTCTTGAGCACTGTTACAACTATGAAATCCCACAGGCATCCTaGCTCTGTGTATTGAGGATG +
Preference number: 4 (lower is better)
Translates to: ILWRAQHRQTLEHCYNYEIPQAS*LCVLRM
Trigger: CATCCTCAATACACAGAGTCAGGATGCCTGTGGGAT...TTCATAGTTGTAACAGTGCTCAAGAGTTTGTCTGTGTTGTGCCCTCCACAGAAT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000126664.8
CDS-3UTR GCA 90 bp TCATTCTGTGGAGGGCACAACACAGACAAACTCTTGAGCACTGTTACAACTATGGTCTCACGTGTGCTCTaGTCAACAGTAGACACTGTT +
Preference number: 4 (lower is better)
Translates to: SFCGGHNTDKLLSTVTTMVSRVL*STVDTV
Trigger: AACAGTGTCTACTGTTGAGCAGAGCACACGTGAGAC...CATAGTTGTAACAGTGCTCAAGAGTTTGTCTGTGTTGTGCCCTCCACAGAATGA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000094710.8
ENSMUST00000126664.8
CDS-3UTR GCA 90 bp CGTGATTTGTCACAGCAGAAACCTTGCTACAGACATCTCTACCCTTCAATATGTGCCTCTGCTTTAAATTaGTCTCTCCATCAAGGCCGG +
Preference number: 4 (lower is better)
Translates to: RDLSQQKPCYRHLYPSICASALN*SLHQGR
Trigger: CCGGCCTTGATGGAGAGAGCAATTTAAAGCAGAGGC...ACATATTGAAGGGTAGAGATGTCTGTAGCAAGGTTTCTGCTGTGACAAATCACG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000126664.8
CDS-3UTR GCA 90 bp CCTTCCCTACAAAGGCTACTTCAGCAGAAAGCTGAAATGACAGAGAGTGACGTCCACCGTGTTGCAAATTaGCAGTGCAATAAAGAAGTC +
Preference number: 4 (lower is better)
Translates to: PSLQRLLQQKAEMTESDVHRVAN*QCNKEV
Trigger: GACTTCTTTATTGCACTGGCAATTTGCAACACGGTG...GACGTCACTCTCTGTCATTTCAGCTTTCTGCTGAAGTAGCCTTTGTAGGGAAGG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000126664.8
CDS-3UTR GCA 90 bp TCAATTTCAACCCATATCTCATTCTGTGGAGGGCACAACACAGACAAACTCTTGTCGTCCAGGTGCCTCTaGGTTCTCTCCCTTATTATC +
Preference number: 4 (lower is better)
Translates to: SISTHISFCGGHNTDKLLSSRCL*VLSLII
Trigger: GATAATAAGGGAGAGAACGCAGAGGCACCTGGACGA...CAAGAGTTTGTCTGTGTTGTGCCCTCCACAGAATGAGATATGGGTTGAAATTGA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000126664.8
CDS-3UTR GCA 90 bp AAATGGAGACAGCATCCATCCGTGATTTGTCACAGCAGAAACCTTGCTACAGACATTCCTCAGCCACTCTaGATATTCCGTGTCACTCAT +
Preference number: 4 (lower is better)
Translates to: KWRQHPSVICHSRNLATDIPQPL*IFRVTH
Trigger: ATGAGTGACACGGAATATGCAGAGTGGCTGAGGAAT...GTCTGTAGCAAGGTTTCTGCTGTGACAAATCACGGATGGATGCTGTCTCCATTT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000126664.8
CDS-3UTR CCA 90 bp AAACCTTCTCTCATGGGAAATAAAAGGCTCTTGGGAATTTGTCCTCAAAAATTAGACGCCAGTGATGTCTaGCCCACTGCAGCAGCTCAG +
Preference number: 4 (lower is better)
Translates to: KPSLMGNKRLLGICPQKLDASDV*PTAAAQ
Trigger: CTGAGCTGCTGCAGTGGGCCAGACATCACTGGCGTC...TAATTTTTGAGGACAAATTCCCAAGAGCCTTTTATTTCCCATGAGAGAAGGTTT
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000126664.8
CDS-3UTR CCA 90 bp CTCATTCTGTGGAGGGCACAACACAGACAAACTCTTGAGCACTGTTACAACTATCCACACGTTCTTTATTaGCATGTTCCAGGAAGCCTC +
Preference number: 4 (lower is better)
Translates to: LILWRAQHRQTLEHCYNYPHVLY*HVPGSL
Trigger: GAGGCTTCCTGGAACATGCCAATAAAGAACGTGTGG...ATAGTTGTAACAGTGCTCAAGAGTTTGTCTGTGTTGTGCCCTCCACAGAATGAG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000126664.8
CDS-3UTR CCA 90 bp AGGCTACTTCAGCAGAAAGCTGAAATGACAGAGAGTGACGTCAAACACCTTCAGGCTAGGGTCATCACATaGAGATGGTTTCGAACCAAT +
Preference number: 4 (lower is better)
Translates to: RLLQQKAEMTESDVKHLQARVIT*RWFRTN
Trigger: ATTGGTTCGAAACCATCTCCATGTGATGACCCTAGC...CTGAAGGTGTTTGACGTCACTCTCTGTCATTTCAGCTTTCTGCTGAAGTAGCCT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000126664.8
CDS-3UTR CCA 90 bp AAATGGAGACAGCATCCATCCGTGATTTGTCACAGCAGAAACCTTGCTACAGACAATAGAGAATCATGTTaGAGAGCCGGGTGTAACACC +
Preference number: 4 (lower is better)
Translates to: KWRQHPSVICHSRNLATDNRESC*RAGCNT
Trigger: GGTGTTACACCCGGCTCTCCAACATGATTCTCTATT...GTCTGTAGCAAGGTTTCTGCTGTGACAAATCACGGATGGATGCTGTCTCCATTT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000126664.8
CDS-3UTR CCA 90 bp CATTTGTCCGTTTCCTGGTTGACAACATCGGCACATAGGGAGTCTCTGCGTCTAAACCCACAAAAGAACTaGTACCAGAAAAGGAGATTC +
Preference number: 4 (lower is better)
Translates to: HLSVSWLTTSAHRESLRLNPQKN*YQKRRF
Trigger: GAATCTCCTTTTCTGGTACCAGTTCTTTTGTGGGTT...TAGACGCAGAGACTCCCTATGTGCCGATGTTGTCAACCAGGAAACGGACAAATG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000126664.8
3UTR CAA 72 bp ATCTCATTCTGTGGAGGGCACAACACAGACAAACTCTaGAGCACTGTTACAACTATGAACTCTCAAGCGGAC +
Preference number: 4 (lower is better)
Translates to: ISFCGGHNTDKL*STVTTMNSQAD
Trigger: GTCCGCTTGAGAGTTCATAGTTGTAACAGTGCTCAAGAGTTTGTCTGTGTTGTGCCCTCCACAGAATGAGAT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000094710.8
ENSMUST00000126664.8
CDS-3UTR TCA 90 bp TCATTCTGTGGAGGGCACAACACAGACAAACTCTTGAGCACTGTTACAACTATGTCAGAAAAGAGGTATTaGATCTGCCCAAGGTCCTCA +
Preference number: 4 (lower is better)
Translates to: SFCGGHNTDKLLSTVTTMSEKRY*ICPRSS
Trigger: TGAGGACCTTGGGCAGATTCAATACCTCTTTTCTGA...CATAGTTGTAACAGTGCTCAAGAGTTTGTCTGTGTTGTGCCCTCCACAGAATGA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000126664.8
CDS-3UTR TCA 90 bp TGGAGGGCACAACACAGACAAACTCTTGAGCACTGTTACAACTATGAACTCTCAATGCATAAGCTATGTTaGCAGCTGTCTCCTGCTTGT +
Preference number: 4 (lower is better)
Translates to: WRAQHRQTLEHCYNYELSMHKLC*QLSPAC
Trigger: ACAAGCAGGAGACAGCTGTCAACATAGCTTATGCAT...TGAGAGTTCATAGTTGTAACAGTGCTCAAGAGTTTGTCTGTGTTGTGCCCTCCA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000126664.8
CDS-3UTR GCA 90 bp CAAATGTGCTCACAGGTATACAATGATAGAGAGGTTCTTGGTTTTTCCATGCCACTGCAGGAGGGTCTCTaGCGAAACATCTTTCTCCAA +
Preference number: 4 (lower is better)
Translates to: QMCSQVYNDREVLGFSMPLQEGL*RNIFLQ
Trigger: TTGGAGAAAGATGTTTCGGCAGAGACCCTCCTGCAG...TGGCATGGAAAAACCAAGAACCTCTCTATCATTGTATACCTGTGAGCACATTTG
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000094710.8
ENSMUST00000126664.8
CDS-3UTR CCA 90 bp AGGCTACTTCAGCAGAAAGCTGAAATGACAGAGAGTGACGTCAAACACCTTCAGCTTTCAATCACCAGGTaGAGGAGAATGATGAACAGA +
Preference number: 4 (lower is better)
Translates to: RLLQQKAEMTESDVKHLQLSITR*RRMMNR
Trigger: TCTGTTCATCATTCTCCTCCACCTGGTGATTGAAAG...CTGAAGGTGTTTGACGTCACTCTCTGTCATTTCAGCTTTCTGCTGAAGTAGCCT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000094710.8
ENSMUST00000126664.8
CDS-3UTR CCA 90 bp ATGTTGATTTTTCTAAGAGCCTCGGAGATTCCCACTGAGAATAACCTGTATCAACCGGAAGTCTCAATGTaGCAGATGCCATCTGGGTCT +
Preference number: 4 (lower is better)
Translates to: MLIFLRASEIPTENNLYQPEVSM*QMPSGS
Trigger: AGACCCAGATGGCATCTGCCACATTGAGACTTCCGG...TTGATACAGGTTATTCTCAGTGGGAATCTCCGAGGCTCTTAGAAAAATCAACAT
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000126664.8
CDS-3UTR CCA 90 bp TGGAGGGCACAACACAGACAAACTCTTGAGCACTGTTACAACTATGAACTCTCAGGGATTTCATCCATTTaGGAAGACTCGTCCTCCATA +
Preference number: 4 (lower is better)
Translates to: WRAQHRQTLEHCYNYELSGISSI*EDSSSI
Trigger: TATGGAGGACGAGTCTTCCCAAATGGATGAAATCCC...TGAGAGTTCATAGTTGTAACAGTGCTCAAGAGTTTGTCTGTGTTGTGCCCTCCA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000126664.8
CDS-3UTR TCA 90 bp TCAATTTCAACCCATATCTCATTCTGTGGAGGGCACAACACAGACAAACTCTTGCAAAGTACTTGGCTCTaGGAACTGGAGATGGAAACA +
Preference number: 4 (lower is better)
Translates to: SISTHISFCGGHNTDKLLQSTWL*ELEMET
Trigger: TGTTTCCATCTCCAGTTCTCAGAGCCAAGTACTTTG...CAAGAGTTTGTCTGTGTTGTGCCCTCCACAGAATGAGATATGGGTTGAAATTGA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000094710.8
ENSMUST00000126664.8
CDS-3UTR GCA 90 bp CTTTGTTTACAAATGTGCTCACAGGTATACAATGATAGAGAGGTTCTTGGTTTTAAGTCCACCATGACCTaGTCTGGGGTCCGAGACTGT +
Preference number: 4 (lower is better)
Translates to: LCLQMCSQVYNDREVLGFKSTMT*SGVRDC
Trigger: ACAGTCTCGGACCCCAGAGCAGGTCATGGTGGACTT...AAAACCAAGAACCTCTCTATCATTGTATACCTGTGAGCACATTTGTAAACAAAG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000126664.8
CDS-3UTR CCA 90 bp TGGAGGGCACAACACAGACAAACTCTTGAGCACTGTTACAACTATGAACTCTCAATGGTGATTTCCTTTTaGAAGGCTTCTACCAAAGGC +
Preference number: 4 (lower is better)
Translates to: WRAQHRQTLEHCYNYELSMVISF*KASTKG
Trigger: GCCTTTGGTAGAAGCCTTCCAAAAGGAAATCACCAT...TGAGAGTTCATAGTTGTAACAGTGCTCAAGAGTTTGTCTGTGTTGTGCCCTCCA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000126664.8
CDS-3UTR CCA 90 bp AGGCTACTTCAGCAGAAAGCTGAAATGACAGAGAGTGACGTCAAACACCTTCAGATTTGTCTAAAAGTCTaGTATCTGGTACCACGTCTG +
Preference number: 4 (lower is better)
Translates to: RLLQQKAEMTESDVKHLQICLKV*YLVPRL
Trigger: CAGACGTGGTACCAGATACCAGACTTTTAGACAAAT...CTGAAGGTGTTTGACGTCACTCTCTGTCATTTCAGCTTTCTGCTGAAGTAGCCT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000126664.8
CDS-3UTR CCA 90 bp TGGAGGGCACAACACAGACAAACTCTTGAGCACTGTTACAACTATGAACTCTCACCCTGTTGTCAATGCTaGTTTCAGCTAGAAAGTGAT +
Preference number: 4 (lower is better)
Translates to: WRAQHRQTLEHCYNYELSPCCQC*FQLESD
Trigger: ATCACTTTCTAGCTGAAACCAGCATTGACAACAGGG...TGAGAGTTCATAGTTGTAACAGTGCTCAAGAGTTTGTCTGTGTTGTGCCCTCCA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000126664.8
CDS-3UTR CCA 90 bp ATGTTGATTTTTCTAAGAGCCTCGGAGATTCCCACTGAGAATAACCTGTATCAAGAAGAGCTTGTCATCTaGCTCCAGGAGTTTGCATGC +
Preference number: 4 (lower is better)
Translates to: MLIFLRASEIPTENNLYQEELVI*LQEFAC
Trigger: GCATGCAAACTCCTGGAGCCAGATGACAAGCTCTTC...TTGATACAGGTTATTCTCAGTGGGAATCTCCGAGGCTCTTAGAAAAATCAACAT
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000126664.8
3UTR CAA 72 bp GAAACCTTGCTACAGACATCTCTACCCTTCAATATGTaGATTTTTCTAAGAGCCTCGGAGATTCCCACTGAG +
Preference number: 4 (lower is better)
Translates to: ETLLQTSLPFNM*IFLRASEIPTE
Trigger: CTCAGTGGGAATCTCCGAGGCTCTTAGAAAAATCAACATATTGAAGGGTAGAGATGTCTGTAGCAAGGTTTC
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000094710.8
ENSMUST00000126664.8
CDS-3UTR TCA 90 bp ATGTTGATTTTTCTAAGAGCCTCGGAGATTCCCACTGAGAATAACCTGTATCAAGTTTCAGCTAGAAAGTaGTTCCTCAGCCACTCTGCA +
Preference number: 4 (lower is better)
Translates to: MLIFLRASEIPTENNLYQVSARK*FLSHSA
Trigger: TGCAGAGTGGCTGAGGAATCACTTTCTAGCTGAAAC...TTGATACAGGTTATTCTCAGTGGGAATCTCCGAGGCTCTTAGAAAAATCAACAT
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000126664.8
CDS-3UTR TCA 90 bp ATGTTGATTTTTCTAAGAGCCTCGGAGATTCCCACTGAGAATAACCTGTATCAATTGATGCCAGCTTGGTaGAGGGCTTCTATAGACTCA +
Preference number: 4 (lower is better)
Translates to: MLIFLRASEIPTENNLYQLMPAW*RASIDS
Trigger: TGAGTCTATAGAAGCCCTTCACCAAGCTGGCATCAA...TTGATACAGGTTATTCTCAGTGGGAATCTCCGAGGCTCTTAGAAAAATCAACAT
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000126664.8
CDS-3UTR GCA 90 bp TTCAGGTTGGATTTTCCTAAAGCATTTTTCAAATGCATGGTGAGGCTAATCTGTCACGTGATTGACCTTTaGTGTCCCTCTCCACCTCTT +
Preference number: 4 (lower is better)
Translates to: FRLDFPKAFFKCMVRLICHVIDL*CPSPPL
Trigger: AAGAGGTGGAGAGGGACAGCAAAGGTCAATCACGTG...ACAGATTAGCCTCACCATGCATTTGAAAAATGCTTTAGGAAAATCCAACCTGAA
42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000094710.8
CDS-3UTR GCA 90 bp ATGTTGATTTTTCTAAGAGCCTCGGAGATTCCCACTGAGAATAACCTGTATCAAGTCTCACGTGTGCTCTaGTCAACAGTAGACACTGTT +
Preference number: 4 (lower is better)
Translates to: MLIFLRASEIPTENNLYQVSRVL*STVDTV
Trigger: AACAGTGTCTACTGTTGAGCAGAGCACACGTGAGAC...TTGATACAGGTTATTCTCAGTGGGAATCTCCGAGGCTCTTAGAAAAATCAACAT
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000094710.8
ENSMUST00000126664.8
CDS-3UTR GCA 90 bp GTATCAATTTCAACCCATATCTCATTCTGTGGAGGGCACAACACAGACAAACTCTTTCACATTCTATCCTaGTGGAGAACTTCTCCGGAT +
Preference number: 4 (lower is better)
Translates to: VSISTHISFCGGHNTDKLFHILS*WRTSPD
Trigger: ATCCGGAGAAGTTCTCCAGCAGGATAGAATGTGAAA...GAGTTTGTCTGTGTTGTGCCCTCCACAGAATGAGATATGGGTTGAAATTGATAC
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000126664.8
CDS-3UTR GCA 90 bp ATGTTGATTTTTCTAAGAGCCTCGGAGATTCCCACTGAGAATAACCTGTATCAATTCTCTCTAACTTACTaGGCTTATACCGTGGCCCAC +
Preference number: 4 (lower is better)
Translates to: MLIFLRASEIPTENNLYQFSLTY*AYTVAH
Trigger: GTGGGCCACGGTATAAGCGCAGTAAGTTAGAGAGAA...TTGATACAGGTTATTCTCAGTGGGAATCTCCGAGGCTCTTAGAAAAATCAACAT
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000126664.8
CDS-3UTR GCA 90 bp CAAATGTGCTCACAGGTATACAATGATAGAGAGGTTCTTGGTTTTTCCATGCCACCTCCCTGTTGTCAATaGTGGTTTCAGCTAGAAAGT +
Preference number: 4 (lower is better)
Translates to: QMCSQVYNDREVLGFSMPPPCCQ*WFQLES
Trigger: ACTTTCTAGCTGAAACCAGCATTGACAACAGGGAGG...TGGCATGGAAAAACCAAGAACCTCTCTATCATTGTATACCTGTGAGCACATTTG
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000126664.8
CDS-3UTR GCA 90 bp CTTTGTTTACAAATGTGCTCACAGGTATACAATGATAGAGAGGTTCTTGGTTTTCCATCACAGCCTGCATaGCTTCTTGACCTGAGACAC +
Preference number: 4 (lower is better)
Translates to: LCLQMCSQVYNDREVLGFPSQPA*LLDLRH
Trigger: GTGTCTCAGGTCAAGAAGGCATGCAGGCTGTGATGG...AAAACCAAGAACCTCTCTATCATTGTATACCTGTGAGCACATTTGTAAACAAAG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000126664.8
CDS-3UTR CCA 90 bp GAGGTTCTTGGTTTTTCCATGCCAAGCAAAATGCTGACATCCCTTGTACAAAGCTGTTCAGCATTGCTTTaGTTTCATGACCTGCATAGA +
Preference number: 4 (lower is better)
Translates to: EVLGFSMPSKMLTSLVQSCSALL*FHDLHR
Trigger: TCTATGCAGGTCATGAAACCAAAGCAATGCTGAACA...GCTTTGTACAAGGGATGTCAGCATTTTGCTTGGCATGGAAAAACCAAGAACCTC
42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000126664.8
CDS-3UTR TCA 90 bp CTTTGTTTACAAATGTGCTCACAGGTATACAATGATAGAGAGGTTCTTGGTTTTAGGGTGGGTTGCAAGTaGCACATAAGGCTCCAAAAG +
Preference number: 4 (lower is better)
Translates to: LCLQMCSQVYNDREVLGFRVGCK*HIRLQK
Trigger: CTTTTGGAGCCTTATGTGTCACTTGCAACCCACCCT...AAAACCAAGAACCTCTCTATCATTGTATACCTGTGAGCACATTTGTAAACAAAG
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000094710.8
ENSMUST00000126664.8
CDS-3UTR TCA 90 bp TCAATTTCAACCCATATCTCATTCTGTGGAGGGCACAACACAGACAAACTCTTGTGTCATAGATGTTCCTaGAAACCCACAAAAGAACTG +
Preference number: 4 (lower is better)
Translates to: SISTHISFCGGHNTDKLLCHRCS*KPTKEL
Trigger: CAGTTCTTTTGTGGGTTTTCAGGAACATCTATGACA...CAAGAGTTTGTCTGTGTTGTGCCCTCCACAGAATGAGATATGGGTTGAAATTGA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000126664.8
CDS-3UTR GCA 90 bp TGGAGGGCACAACACAGACAAACTCTTGAGCACTGTTACAACTATGAACTCTCAGTTGCAAATTGCCAGTaGAATAAAGAAGTCCATGAT +
Preference number: 4 (lower is better)
Translates to: WRAQHRQTLEHCYNYELSVANCQ*NKEVHD
Trigger: ATCATGGACTTCTTTATTGCACTGGCAATTTGCAAC...TGAGAGTTCATAGTTGTAACAGTGCTCAAGAGTTTGTCTGTGTTGTGCCCTCCA
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000126664.8
CDS-3UTR GCA 90 bp ATTCTGTGGAGGGCACAACACAGACAAACTCTTGAGCACTGTTACAACTATGAAAAGTTCTTCCAAAATTaGACTCATCAGCATCCCACA +
Preference number: 4 (lower is better)
Translates to: ILWRAQHRQTLEHCYNYEKFFQN*THQHPT
Trigger: TGTGGGATGCTGATGAGTGCAATTTTGGAAGAACTT...TTCATAGTTGTAACAGTGCTCAAGAGTTTGTCTGTGTTGTGCCCTCCACAGAAT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000126664.8
CDS-3UTR CCA 90 bp GAGGTTCTTGGTTTTTCCATGCCAAGCAAAATGCTGACATCCCTTGTACAAAGCTGTTTTCTAGTCTCATaGCAGATTCAACTAGCAGTT +
Preference number: 4 (lower is better)
Translates to: EVLGFSMPSKMLTSLVQSCFLVS*QIQLAV
Trigger: AACTGCTAGTTGAATCTGCCATGAGACTAGAAAACA...GCTTTGTACAAGGGATGTCAGCATTTTGCTTGGCATGGAAAAACCAAGAACCTC
41% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000126664.8
CDS-3UTR TCA 90 bp CAAATGTGCTCACAGGTATACAATGATAGAGAGGTTCTTGGTTTTTCCATGCCAATAAATTCTCTTTGCTaGGGCCCACACGTTCTTTAT +
Preference number: 4 (lower is better)
Translates to: QMCSQVYNDREVLGFSMPINSLC*GPHVLY
Trigger: ATAAAGAACGTGTGGGCCTCAGCAAAGAGAATTTAT...TGGCATGGAAAAACCAAGAACCTCTCTATCATTGTATACCTGTGAGCACATTTG
40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000126664.8
CDS-3UTR GCA 90 bp CTTTGTTTACAAATGTGCTCACAGGTATACAATGATAGAGAGGTTCTTGGTTTTTCTCAATGTGGCAGATaGCATCTGGGTCTGTGGAAA +
Preference number: 4 (lower is better)
Translates to: LCLQMCSQVYNDREVLGFSQCGR*HLGLWK
Trigger: TTTCCACAGACCCAGATGGCATCTGCCACATTGAGA...AAAACCAAGAACCTCTCTATCATTGTATACCTGTGAGCACATTTGTAAACAAAG
40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000126664.8
CDS-3UTR GCA 90 bp AAACCTTCTCTCATGGGAAATAAAAGGCTCTTGGGAATTTGTCCTCAAAAATTATACGGCCCTGTTTTGTaGCTCTGTTTCTGTACAGCA +
Preference number: 4 (lower is better)
Translates to: KPSLMGNKRLLGICPQKLYGPVL*LCFCTA
Trigger: TGCTGTACAGAAACAGAGGCACAAAACAGGGCCGTA...TAATTTTTGAGGACAAATTCCCAAGAGCCTTTTATTTCCCATGAGAGAAGGTTT
40% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000126664.8
CDS-3UTR CCA 90 bp CTTTGTTTACAAATGTGCTCACAGGTATACAATGATAGAGAGGTTCTTGGTTTTACCGTGACCAGCATGTaGATCCAAGTCAAACTCTTG +
Preference number: 4 (lower is better)
Translates to: LCLQMCSQVYNDREVLGFTVTSM*IQVKLL
Trigger: CAAGAGTTTGACTTGGATCCACATGCTGGTCACGGT...AAAACCAAGAACCTCTCTATCATTGTATACCTGTGAGCACATTTGTAAACAAAG
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000094710.8
ENSMUST00000126664.8
CDS-3UTR CCA 90 bp AAACCTTCTCTCATGGGAAATAAAAGGCTCTTGGGAATTTGTCCTCAAAAATTATCTGAGAACTGGAGATaGAAACACGGATCCCTGAAG +
Preference number: 4 (lower is better)
Translates to: KPSLMGNKRLLGICPQKLSENWR*KHGSLK
Trigger: CTTCAGGGATCCGTGTTTCCATCTCCAGTTCTCAGA...TAATTTTTGAGGACAAATTCCCAAGAGCCTTTTATTTCCCATGAGAGAAGGTTT
40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000094710.8
ENSMUST00000126664.8
CDS-3UTR CCA 90 bp CTTTGTTTACAAATGTGCTCACAGGTATACAATGATAGAGAGGTTCTTGGTTTTTCAGGAGTGTGTACTTaGTCGTCCGTATCCGGTTAT +
Preference number: 4 (lower is better)
Translates to: LCLQMCSQVYNDREVLGFSGVCT*SSVSGY
Trigger: ATAACCGGATACGGACGACCAAGTACACACTCCTGA...AAAACCAAGAACCTCTCTATCATTGTATACCTGTGAGCACATTTGTAAACAAAG
40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000126664.8
CDS-3UTR CCA 90 bp CAAATGTGCTCACAGGTATACAATGATAGAGAGGTTCTTGGTTTTTCCATGCCAGCTGAGGTCATTGTTTaGACTTTCACATTCTATCCT +
Preference number: 4 (lower is better)
Translates to: QMCSQVYNDREVLGFSMPAEVIV*TFTFYP
Trigger: AGGATAGAATGTGAAAGTCCAAACAATGACCTCAGC...TGGCATGGAAAAACCAAGAACCTCTCTATCATTGTATACCTGTGAGCACATTTG
40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000126664.8
CDS-3UTR CCA 90 bp ATGTTGATTTTTCTAAGAGCCTCGGAGATTCCCACTGAGAATAACCTGTATCAAGTCATCACATGGAGATaGTTTCGAACCAATTTCACC +
Preference number: 4 (lower is better)
Translates to: MLIFLRASEIPTENNLYQVITWR*FRTNFT
Trigger: GGTGAAATTGGTTCGAAACCATCTCCATGTGATGAC...TTGATACAGGTTATTCTCAGTGGGAATCTCCGAGGCTCTTAGAAAAATCAACAT
40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000126664.8
CDS-3UTR CCA 90 bp AAACCTTCTCTCATGGGAAATAAAAGGCTCTTGGGAATTTGTCCTCAAAAATTACACATTCTATCCTGCTaGAGAACTTCTCCGGATCAA +
Preference number: 4 (lower is better)
Translates to: KPSLMGNKRLLGICPQKLHILSC*RTSPDQ
Trigger: TTGATCCGGAGAAGTTCTCCAGCAGGATAGAATGTG...TAATTTTTGAGGACAAATTCCCAAGAGCCTTTTATTTCCCATGAGAGAAGGTTT
39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000126664.8
CDS-3UTR GCA 90 bp CTTTGTTTACAAATGTGCTCACAGGTATACAATGATAGAGAGGTTCTTGGTTTTTCCAAGTCAAACTCTTaGTTTCAATCACCAGGTGGA +
Preference number: 4 (lower is better)
Translates to: LCLQMCSQVYNDREVLGFSKSNS*FQSPGG
Trigger: TCCACCTGGTGATTGAAAGCAAGAGTTTGACTTGGA...AAAACCAAGAACCTCTCTATCATTGTATACCTGTGAGCACATTTGTAAACAAAG
38% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000094710.8
ENSMUST00000126664.8
CDS-3UTR GCA 90 bp CCAAAACCTTCTCTCATGGGAAATAAAAGGCTCTTGGGAATTTGTCCTCAAAAACAAGCCATCTTTAATTaGAATAATTGTGAGGACCAC +
Preference number: 4 (lower is better)
Translates to: PKPSLMGNKRLLGICPQKQAIFN*NNCEDH
Trigger: GTGGTCCTCACAATTATTGCAATTAAAGATGGCTTG...TTTTTGAGGACAAATTCCCAAGAGCCTTTTATTTCCCATGAGAGAAGGTTTTGG
38% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000126664.8
CDS-3UTR CCA 90 bp AAACCTTCTCTCATGGGAAATAAAAGGCTCTTGGGAATTTGTCCTCAAAAATTACTTTCAATCACCAGGTaGAGGAGAATGATGAACAGA +
Preference number: 4 (lower is better)
Translates to: KPSLMGNKRLLGICPQKLLSITR*RRMMNR
Trigger: TCTGTTCATCATTCTCCTCCACCTGGTGATTGAAAG...TAATTTTTGAGGACAAATTCCCAAGAGCCTTTTATTTCCCATGAGAGAAGGTTT
38% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000094710.8
ENSMUST00000126664.8
CDS-3UTR CCA 90 bp AAACCTTCTCTCATGGGAAATAAAAGGCTCTTGGGAATTTGTCCTCAAAAATTACGGACGGACAATTTCTaGAAGATGTTTTTAATCTCT +
Preference number: 4 (lower is better)
Translates to: KPSLMGNKRLLGICPQKLRTDNF*KMFLIS
Trigger: AGAGATTAAAAACATCTTCCAGAAATTGTCCGTCCG...TAATTTTTGAGGACAAATTCCCAAGAGCCTTTTATTTCCCATGAGAGAAGGTTT
36% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 1 transcripts:
ENSMUST00000126664.8
CDS TCA 90 bp TGGGAACTGTCCTGCAGCCCTGGGCTCTGGGTCTCGCCATGTTGCTaGGGGAGCCGCCGAGAGTGTCTGTGCATTCCTCCTCTTCAGAGA +
Preference number: 5 (lower is better)
Translates to: WELSCSPGLWVSPCC*GSRRECLCIPPLQR
Trigger: TCTCTGAAGAGGAGGAATGCACAGACACTCTCGGCGGCTCCCTCAGCAACATGGCGAGACCCAGAGCCCAGGGCTGCAGGACAGTTCCCA
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000126664.8
CDS TCA 90 bp CCAGATCCTTCTCCATTTCCTACAGCAGAGGTGCTCCCGGAGAGCTaGGCCGAGGGCTTTCCCAGAGGCCCACTGGGAACTGTCCTGCAG +
Preference number: 5 (lower is better)
Translates to: PDPSPFPTAEVLPES*AEGFPRGPLGTVLQ
Trigger: CTGCAGGACAGTTCCCAGTGGGCCTCTGGGAAAGCCCTCGGCTCAGCTCTCCGGGAGCACCTCTGCTGTAGGAAATGGAGAAGGATCTGG
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000126664.8
CDS GCA 90 bp CGGCAGCAGATCACAGCTTGGCACCACGCGGTCAGCTCAAGGAACTaGCTTTGCAGACTCTCCTGCAGGGCAAACTCCAGGGTCTTCCCA +
Preference number: 5 (lower is better)
Translates to: RQQITAWHHAVSSRN*LCRLSCRANSRVFP
Trigger: TGGGAAGACCCTGGAGTTTGCCCTGCAGGAGAGTCTGCAAAGGCAGTTCCTTGAGCTGACCGCGTGGTGCCAAGCTGTGATCTGCTGCCG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000126664.8
CDS GCA 90 bp TCCCGGGCCGCTCATCCCAGCATGGTGTTACCTCGGATCCCAAAGTaGCAAAAGAGAACGGAGCAGAGATCCAAAGGGCGGGGAGAGTTA +
Preference number: 5 (lower is better)
Translates to: SRAAHPSMVLPRIPK*QKRTEQRSKGRGEL
Trigger: TAACTCTCCCCGCCCTTTGGATCTCTGCTCCGTTCTCTTTTGGCACTTTGGGATCCGAGGTAACACCATGCTGGGATGAGCGGCCCGGGA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000126664.8
ENSMUST00000169617.3
CDS GCA 90 bp TGGCACCACGCGGTCAGCTCAAGGAACTGCCTTTGCAGACTCTCCTaGAGGGCAAACTCCAGGGTCTTCCCAGTGATAACAAGTCCCGCA +
Preference number: 5 (lower is better)
Translates to: WHHAVSSRNCLCRLS*RANSRVFPVITSPA
Trigger: TGCGGGACTTGTTATCACTGGGAAGACCCTGGAGTTTGCCCTGCAGGAGAGTCTGCAAAGGCAGTTCCTTGAGCTGACCGCGTGGTGCCA
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000126664.8
CDS GCA 90 bp CAGATCACAGCTTGGCACCACGCGGTCAGCTCAAGGAACTGCCTTTaGAGACTCTCCTGCAGGGCAAACTCCAGGGTCTTCCCAGTGATA +
Preference number: 5 (lower is better)
Translates to: QITAWHHAVSSRNCL*RLSCRANSRVFPVI
Trigger: TATCACTGGGAAGACCCTGGAGTTTGCCCTGCAGGAGAGTCTGCAAAGGCAGTTCCTTGAGCTGACCGCGTGGTGCCAAGCTGTGATCTG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000126664.8
CDS TCA 90 bp ACCACGTCTGTTTCCATGGGACTACTGAAGGCGGCCTGTCTGGAATaGGGCACTTCCCCAGATCCTTCTCCATTTCCTACAGCAGAGGTG +
Preference number: 5 (lower is better)
Translates to: TTSVSMGLLKAACLE*GTSPDPSPFPTAEV
Trigger: CACCTCTGCTGTAGGAAATGGAGAAGGATCTGGGGAAGTGCCTCATTCCAGACAGGCCGCCTTCAGTAGTCCCATGGAAACAGACGTGGT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000126664.8
CDS GCA 90 bp CCAGGTTCAGAGCAGCCACGGTCTAGCGCAGTCTCACGTGTGCTCTaGTCAACAGTAGACACTGTTGCTGACTTCATTGCAAGGACAGCA +
Preference number: 5 (lower is better)
Translates to: PGSEQPRSSAVSRVL*STVDTVADFIARTA
Trigger: TGCTGTCCTTGCAATGAAGTCAGCAACAGTGTCTACTGTTGAGCAGAGCACACGTGAGACTGCGCTAGACCGTGGCTGCTCTGAACCTGG
54% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000094710.8
ENSMUST00000126664.8
CDS CCA 90 bp TGCTCACAAAGGCACAGGGAGTCCCAGAGGATGAATCCTTCCCACTaGCAAGGGACGGTGAACTTGATCTCCGGACGGACAATTTCTGGA +
Preference number: 5 (lower is better)
Translates to: CSQRHRESQRMNPSH*QGTVNLISGRTISG
Trigger: TCCAGAAATTGTCCGTCCGGAGATCAAGTTCACCGTCCCTTGCCAGTGGGAAGGATTCATCCTCTGGGACTCCCTGTGCCTTTGTGAGCA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000126664.8
CDS TCA 90 bp TGCCAGTGCAATAAAGAAGTCCATGATGTACAAAGTCTCCAGCGGTaGACTCTGAGCGGTGCCATCCAGTCCAGTGAGCAGCTGAGGGGT +
Preference number: 5 (lower is better)
Translates to: CQCNKEVHDVQSLQR*TLSGAIQSSEQLRG
Trigger: ACCCCTCAGCTGCTCACTGGACTGGATGGCACCGCTCAGAGTTCACCGCTGGAGACTTTGTACATCATGGACTTCTTTATTGCACTGGCA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000126664.8
CDS CCA 90 bp ATGGGCATTCCACCCAGTGAGGAGAGTCCAATCTTTTGCCGAGGTTaGTTCGGTGCAGAAACCACCACCGTGTTGCAAATTGCCAGTGCA +
Preference number: 5 (lower is better)
Translates to: MGIPPSEESPIFCRG*FGAETTTVLQIASA
Trigger: TGCACTGGCAATTTGCAACACGGTGGTGGTTTCTGCACCGAACCAACCTCGGCAAAAGATTGGACTCTCCTCACTGGGTGGAATGCCCAT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000126664.8
CDS TCA 90 bp CTTCCTGACATAGCAGCTGATTGGCTGGCATGCTTAGATGCCACGTaGTTGACCTTTGCTGTCCCTCTCCACCTCTTGAGAGCTTCAGCT +
Preference number: 5 (lower is better)
Translates to: LPDIAADWLACLDAT*LTFAVPLHLLRASA
Trigger: AGCTGAAGCTCTCAAGAGGTGGAGAGGGACAGCAAAGGTCAATCACGTGGCATCTAAGCATGCCAGCCAATCAGCTGCTATGTCAGGAAG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000094710.8
ENSMUST00000126664.8
CDS TCA 90 bp GAGTCCTACGGCCCTGTTTTGTGCCTCTGTTTCTGTACAGCAAGCTaGGTTACTGGCCTGGGGGATTTCATCCATTTGGGAAGACTCGTC +
Preference number: 5 (lower is better)
Translates to: ESYGPVLCLCFCTAS*VTGLGDFIHLGRLV
Trigger: GACGAGTCTTCCCAAATGGATGAAATCCCCCAGGCCAGTAACTCAGCTTGCTGTACAGAAACAGAGGCACAAAACAGGGCCGTAGGACTC
52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000126664.8
CDS-3UTR CAA 90 bp GAGGTTCTTGGTTTTTCCATGCCAAGCAAAATGCTGACATCCCTTGTACAAAGCGTGCGCAGCCCTCGTTaGGCATACTCGTCCAGGTGC +
Preference number: 5 (lower is better)
Translates to: EVLGFSMPSKMLTSLVQSVRSPR*AYSSRC
Trigger: GCACCTGGACGAGTATGCCAAACGAGGGCTGCGCAC...GCTTTGTACAAGGGATGTCAGCATTTTGCTTGGCATGGAAAAACCAAGAACCTC
52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000126664.8
CDS GCA 90 bp AAGGACTTGATGGGCATTCCACCCAGTGAGGAGAGTCCAATCTTTTaGCGAGGTTGGTTCGGTGCAGAAACCACCACCGTGTTGCAAATT +
Preference number: 5 (lower is better)
Translates to: KDLMGIPPSEESPIF*RGWFGAETTTVLQI
Trigger: AATTTGCAACACGGTGGTGGTTTCTGCACCGAACCAACCTCGGCAAAAGATTGGACTCTCCTCACTGGGTGGAATGCCCATCAAGTCCTT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000126664.8
CDS GCA 90 bp TTGCCGAGGTTGGTTCGGTGCAGAAACCACCACCGTGTTGCAAATTaGCAGTGCAATAAAGAAGTCCATGATGTACAAAGTCTCCAGCGG +
Preference number: 5 (lower is better)
Translates to: LPRLVRCRNHHRVAN*QCNKEVHDVQSLQR
Trigger: CCGCTGGAGACTTTGTACATCATGGACTTCTTTATTGCACTGGCAATTTGCAACACGGTGGTGGTTTCTGCACCGAACCAACCTCGGCAA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000126664.8
CDS GCA 90 bp GCTACACATAGAGTGCGCAGCCCTCGTTTGGCATACTCGTCCAGGTaGCTCTGCGTTCTCTCCCTTATTATCATCTGTTGTTCTGGATTT +
Preference number: 5 (lower is better)
Translates to: ATHRVRSPRLAYSSR*LCVLSLIIICCSGF
Trigger: AAATCCAGAACAACAGATGATAATAAGGGAGAGAACGCAGAGGCACCTGGACGAGTATGCCAAACGAGGGCTGCGCACTCTATGTGTAGC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000126664.8
CDS CCA 90 bp TCTGTACAGCAAGCTGAGTTACTGGCCTGGGGGATTTCATCCATTTaGGAAGACTCGTCCTCCATAGGAGGTGACAGTTTTGGTCGACTA +
Preference number: 5 (lower is better)
Translates to: SVQQAELLAWGISSI*EDSSSIGGDSFGRL
Trigger: TAGTCGACCAAAACTGTCACCTCCTATGGAGGACGAGTCTTCCCAAATGGATGAAATCCCCCAGGCCAGTAACTCAGCTTGCTGTACAGA
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000126664.8
CDS CCA 90 bp CTGTTTTGTGCCTCTGTTTCTGTACAGCAAGCTGAGTTACTGGCCTaGGGGATTTCATCCATTTGGGAAGACTCGTCCTCCATAGGAGGT +
Preference number: 5 (lower is better)
Translates to: LFCASVSVQQAELLA*GISSIWEDSSSIGG
Trigger: ACCTCCTATGGAGGACGAGTCTTCCCAAATGGATGAAATCCCCCAGGCCAGTAACTCAGCTTGCTGTACAGAAACAGAGGCACAAAACAG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000126664.8
CDS-3UTR CAA 90 bp GAGGTTCTTGGTTTTTCCATGCCAAGCAAAATGCTGACATCCCTTGTACAAAGCGAGGATCCAGTCATCTaGGAGGCCCCAGGTTCAGAG +
Preference number: 5 (lower is better)
Translates to: EVLGFSMPSKMLTSLVQSEDPVI*EAPGSE
Trigger: CTCTGAACCTGGGGCCTCCAAGATGACTGGATCCTC...GCTTTGTACAAGGGATGTCAGCATTTTGCTTGGCATGGAAAAACCAAGAACCTC
50% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000094710.8
ENSMUST00000126664.8
CDS-3UTR CAA 90 bp AAATGGAGACAGCATCCATCCGTGATTTGTCACAGCAGAAACCTTGCTACAGACGCAGGGATGATCTCATaGCAGGACAGGCGGATGAAG +
Preference number: 5 (lower is better)
Translates to: KWRQHPSVICHSRNLATDAGMIS*QDRRMK
Trigger: CTTCATCCGCCTGTCCTGCAATGAGATCATCCCTGC...GTCTGTAGCAAGGTTTCTGCTGTGACAAATCACGGATGGATGCTGTCTCCATTT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000126664.8
CDS TCA 90 bp CTTCAGCTCTCTCCTCTGGAGGTAGTCTGTCAAAGTACTTGGCTCTaGGAACTGGAGATGGAAACACGGATCCCTGAAGAACTCGGTAAA +
Preference number: 5 (lower is better)
Translates to: LQLSPLEVVCQSTWL*ELEMETRIPEELGK
Trigger: TTTACCGAGTTCTTCAGGGATCCGTGTTTCCATCTCCAGTTCTCAGAGCCAAGTACTTTGACAGACTACCTCCAGAGGAGAGAGCTGAAG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000094710.8
ENSMUST00000126664.8
CDS TCA 90 bp GTAGGAGTTAAAATGTTAATGAGCCCAAAGCAGCAAAGTCCACCATaGCCTGCTCTGGGGTCCGAGACTGTAAAGTGCAACGGTAAGCTC +
Preference number: 5 (lower is better)
Translates to: VGVKMLMSPKQQSPP*PALGSETVKCNGKL
Trigger: GAGCTTACCGTTGCACTTTACAGTCTCGGACCCCAGAGCAGGTCATGGTGGACTTTGCTGCTTTGGGCTCATTAACATTTTAACTCCTAC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000126664.8
CDS GCA 90 bp TTAAATTGCTCTCTCCATCAAGGCCGGAAGTCTCAATGTGGCAGATaGCATCTGGGTCTGTGGAAAAGAGTAAGACCATGTCTGCAGGGA +
Preference number: 5 (lower is better)
Translates to: LNCSLHQGRKSQCGR*HLGLWKRVRPCLQG
Trigger: TCCCTGCAGACATGGTCTTACTCTTTTCCACAGACCCAGATGGCATCTGCCACATTGAGACTTCCGGCCTTGATGGAGAGAGCAATTTAA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000126664.8
CDS GCA 90 bp CAGCTCCGGAGACACTTGAGCTCTCTTCTGAAGTTCTTCCAAAATTaGACTCATCAGCATCCCACAGGCATCCTGACTCTGTGTATTGAG +
Preference number: 5 (lower is better)
Translates to: QLRRHLSSLLKFFQN*THQHPTGILTLCIE
Trigger: CTCAATACACAGAGTCAGGATGCCTGTGGGATGCTGATGAGTGCAATTTTGGAAGAACTTCAGAAGAGAGCTCAAGTGTCTCCGGAGCTG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000126664.8
CDS CCA 90 bp ATTGGCATGTTCCAGGAAGCCTCGGAATCGGCTGAGGTCATTGTTTaGACTTTCACATTCTATCCTGCTGGAGAACTTCTCCGGATCAAC +
Preference number: 5 (lower is better)
Translates to: IGMFQEASESAEVIV*TFTFYPAGELLRIN
Trigger: GTTGATCCGGAGAAGTTCTCCAGCAGGATAGAATGTGAAAGTCCAAACAATGACCTCAGCCGATTCCGAGGCTTCCTGGAACATGCCAAT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000126664.8
CDS-3UTR CAA 90 bp GTATCAATTTCAACCCATATCTCATTCTGTGGAGGGCACAACACAGACAAACTCGAGGATCCAGTCATCTaGGAGGCCCCAGGTTCAGAG +
Preference number: 5 (lower is better)
Translates to: VSISTHISFCGGHNTDKLEDPVI*EAPGSE
Trigger: CTCTGAACCTGGGGCCTCCAAGATGACTGGATCCTC...GAGTTTGTCTGTGTTGTGCCCTCCACAGAATGAGATATGGGTTGAAATTGATAC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000094710.8
ENSMUST00000126664.8
CDS-3UTR CAA 90 bp CCTTCCCTACAAAGGCTACTTCAGCAGAAAGCTGAAATGACAGAGAGTGACGTCATCTCTTCCAAGGACTaGATGGGCATTCCACCCAGT +
Preference number: 5 (lower is better)
Translates to: PSLQRLLQQKAEMTESDVISSKD*MGIPPS
Trigger: ACTGGGTGGAATGCCCATCAAGTCCTTGGAAGAGAT...GACGTCACTCTCTGTCATTTCAGCTTTCTGCTGAAGTAGCCTTTGTAGGGAAGG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000126664.8
CDS-3UTR CAA 90 bp GTATCAATTTCAACCCATATCTCATTCTGTGGAGGGCACAACACAGACAAACTCCTCAAGGAACTGCCTTaGCAGACTCTCCTGCAGGGC +
Preference number: 5 (lower is better)
Translates to: VSISTHISFCGGHNTDKLLKELP*QTLLQG
Trigger: GCCCTGCAGGAGAGTCTGCAAAGGCAGTTCCTTGAG...GAGTTTGTCTGTGTTGTGCCCTCCACAGAATGAGATATGGGTTGAAATTGATAC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000126664.8
CDS TCA 90 bp CCACACGTTCTTTATTGGCATGTTCCAGGAAGCCTCGGAATCGGCTaGGGTCATTGTTTGGACTTTCACATTCTATCCTGCTGGAGAACT +
Preference number: 5 (lower is better)
Translates to: PHVLYWHVPGSLGIG*GHCLDFHILSCWRT
Trigger: AGTTCTCCAGCAGGATAGAATGTGAAAGTCCAAACAATGACCTCAGCCGATTCCGAGGCTTCCTGGAACATGCCAATAAAGAACGTGTGG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000126664.8
CDS TCA 90 bp GATGTTTTTAATCTCTTCCAAGGACTTGATGGGCATTCCACCCAGTaGGGAGAGTCCAATCTTTTGCCGAGGTTGGTTCGGTGCAGAAAC +
Preference number: 5 (lower is better)
Translates to: DVFNLFQGLDGHSTQ*GESNLLPRLVRCRN
Trigger: GTTTCTGCACCGAACCAACCTCGGCAAAAGATTGGACTCTCCTCACTGGGTGGAATGCCCATCAAGTCCTTGGAAGAGATTAAAAACATC
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000126664.8
CDS TCA 90 bp CTGGGGGATTTCATCCATTTGGGAAGACTCGTCCTCCATAGGAGGTaGCAGTTTTGGTCGACTAAAGAAAGAGATTCTGCTCACAAAGGC +
Preference number: 5 (lower is better)
Translates to: LGDFIHLGRLVLHRR*QFWSTKERDSAHKG
Trigger: GCCTTTGTGAGCAGAATCTCTTTCTTTAGTCGACCAAAACTGTCACCTCCTATGGAGGACGAGTCTTCCCAAATGGATGAAATCCCCCAG
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000126664.8
CDS TCA 90 bp ACTAGCAGTTCCTCCCTGTTGTCAATGCTGGTTTCAGCTAGAAAGTaGTTCCTCAGCCACTCTGCATATTCCGTGTCACTCATGACCTTC +
Preference number: 5 (lower is better)
Translates to: TSSSSLLSMLVSARK*FLSHSAYSVSLMTF
Trigger: GAAGGTCATGAGTGACACGGAATATGCAGAGTGGCTGAGGAATCACTTTCTAGCTGAAACCAGCATTGACAACAGGGAGGAACTGCTAGT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000126664.8
CDS CCA 90 bp CTCTGCTTTAAATTGCTCTCTCCATCAAGGCCGGAAGTCTCAATGTaGCAGATGCCATCTGGGTCTGTGGAAAAGAGTAAGACCATGTCT +
Preference number: 5 (lower is better)
Translates to: LCFKLLSPSRPEVSM*QMPSGSVEKSKTMS
Trigger: AGACATGGTCTTACTCTTTTCCACAGACCCAGATGGCATCTGCCACATTGAGACTTCCGGCCTTGATGGAGAGAGCAATTTAAAGCAGAG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000126664.8
CDS CCA 90 bp GTCTCATGGCAGATTCAACTAGCAGTTCCTCCCTGTTGTCAATGCTaGTTTCAGCTAGAAAGTGATTCCTCAGCCACTCTGCATATTCCG +
Preference number: 5 (lower is better)
Translates to: VSWQIQLAVPPCCQC*FQLESDSSATLHIP
Trigger: CGGAATATGCAGAGTGGCTGAGGAATCACTTTCTAGCTGAAACCAGCATTGACAACAGGGAGGAACTGCTAGTTGAATCTGCCATGAGAC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000126664.8
CDS-3UTR CAA 90 bp ATGGAGACAGCATCCATCCGTGATTTGTCACAGCAGAAACCTTGCTACAGACATGATGTGAAGAGGAGGTaGAAGAAGATCAGCACCCAG +
Preference number: 5 (lower is better)
Translates to: METASIRDLSQQKPCYRHDVKRR*KKISTQ
Trigger: CTGGGTGCTGATCTTCTTCAACCTCCTCTTCACATC...ATGTCTGTAGCAAGGTTTCTGCTGTGACAAATCACGGATGGATGCTGTCTCCAT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000094710.8
ENSMUST00000126664.8
CDS-3UTR CAA 90 bp TCATTCTGTGGAGGGCACAACACAGACAAACTCTTGAGCACTGTTACAACTATGTCCTACGGCCCTGTTTaGTGCCTCTGTTTCTGTACA +
Preference number: 5 (lower is better)
Translates to: SFCGGHNTDKLLSTVTTMSYGPV*CLCFCT
Trigger: TGTACAGAAACAGAGGCACAAAACAGGGCCGTAGGA...CATAGTTGTAACAGTGCTCAAGAGTTTGTCTGTGTTGTGCCCTCCACAGAATGA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000126664.8
CDS-3UTR CAA 90 bp AGGCTACTTCAGCAGAAAGCTGAAATGACAGAGAGTGACGTCAAACACCTTCAGTCTGTTGTTCTGGATTaGTTCCATCTGAGGCAGCCA +
Preference number: 5 (lower is better)
Translates to: RLLQQKAEMTESDVKHLQSVVLD*FHLRQP
Trigger: TGGCTGCCTCAGATGGAACAAATCCAGAACAACAGA...CTGAAGGTGTTTGACGTCACTCTCTGTCATTTCAGCTTTCTGCTGAAGTAGCCT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000126664.8
CDS GCA 90 bp CTAGTCTCATGGCAGATTCAACTAGCAGTTCCTCCCTGTTGTCAATaGTGGTTTCAGCTAGAAAGTGATTCCTCAGCCACTCTGCATATT +
Preference number: 5 (lower is better)
Translates to: LVSWQIQLAVPPCCQ*WFQLESDSSATLHI
Trigger: AATATGCAGAGTGGCTGAGGAATCACTTTCTAGCTGAAACCAGCATTGACAACAGGGAGGAACTGCTAGTTGAATCTGCCATGAGACTAG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000126664.8
CDS-3UTR CAA 90 bp ATGGAGACAGCATCCATCCGTGATTTGTCACAGCAGAAACCTTGCTACAGACATGAAGCAGACCAGGCTTaGATAAAAGGCATCCAACAA +
Preference number: 5 (lower is better)
Translates to: METASIRDLSQQKPCYRHEADQA*IKGIQQ
Trigger: TTGTTGGATGCCTTTTATCAAAGCCTGGTCTGCTTC...ATGTCTGTAGCAAGGTTTCTGCTGTGACAAATCACGGATGGATGCTGTCTCCAT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000094710.8
ENSMUST00000126664.8
CDS-3UTR CAA 90 bp GACATCTCTACCCTTCAATATGTTGATTTTTCTAAGAGCCTCGGAGATTCCCACTGCCTCTGCTTTAAATaGCTCTCTCCATCAAGGCCG +
Preference number: 5 (lower is better)
Translates to: DISTLQYVDFSKSLGDSHCLCFK*LSPSRP
Trigger: CGGCCTTGATGGAGAGAGCAATTTAAAGCAGAGGCA...GTGGGAATCTCCGAGGCTCTTAGAAAAATCAACATATTGAAGGGTAGAGATGTC
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000126664.8
CDS-3UTR CAA 90 bp GAGGTTCTTGGTTTTTCCATGCCAAGCAAAATGCTGACATCCCTTGTACAAAGCAGAGGACGTCGGTGTTaGCTCTTCTCTCTAACTTAC +
Preference number: 5 (lower is better)
Translates to: EVLGFSMPSKMLTSLVQSRGRRC*LFSLTY
Trigger: GTAAGTTAGAGAGAAGAGCAAACACCGACGTCCTCT...GCTTTGTACAAGGGATGTCAGCATTTTGCTTGGCATGGAAAAACCAAGAACCTC
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000126664.8
CDS-3UTR CAA 90 bp GACATCTCTACCCTTCAATATGTTGATTTTTCTAAGAGCCTCGGAGATTCCCACAATCTTTTGCCGAGGTaGGTTCGGTGCAGAAACCAC +
Preference number: 5 (lower is better)
Translates to: DISTLQYVDFSKSLGDSHNLLPR*VRCRNH
Trigger: GTGGTTTCTGCACCGAACCAACCTCGGCAAAAGATT...GTGGGAATCTCCGAGGCTCTTAGAAAAATCAACATATTGAAGGGTAGAGATGTC
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000126664.8
CDS-3UTR CAA 90 bp GACATCTCTACCCTTCAATATGTTGATTTTTCTAAGAGCCTCGGAGATTCCCACTTGAGGATGAAGAGCTaGTCATCTGGCTCCAGGAGT +
Preference number: 5 (lower is better)
Translates to: DISTLQYVDFSKSLGDSHLRMKS*SSGSRS
Trigger: ACTCCTGGAGCCAGATGACAAGCTCTTCATCCTCAA...GTGGGAATCTCCGAGGCTCTTAGAAAAATCAACATATTGAAGGGTAGAGATGTC
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000126664.8
CDS-3UTR CAA 90 bp TGGAGGGCACAACACAGACAAACTCTTGAGCACTGTTACAACTATGAACTCTCACATGGTGATTTCCTTTaGGAAGGCTTCTACCAAAGG +
Preference number: 5 (lower is better)
Translates to: WRAQHRQTLEHCYNYELSHGDFL*EGFYQR
Trigger: CCTTTGGTAGAAGCCTTCCAAAAGGAAATCACCATG...TGAGAGTTCATAGTTGTAACAGTGCTCAAGAGTTTGTCTGTGTTGTGCCCTCCA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000126664.8
CDS-3UTR CAA 90 bp TGGAGGGCACAACACAGACAAACTCTTGAGCACTGTTACAACTATGAACTCTCATGTATACACCACGACTaGTTTGGAAAGAGGATGCCT +
Preference number: 5 (lower is better)
Translates to: WRAQHRQTLEHCYNYELSCIHHD*FGKRMP
Trigger: AGGCATCCTCTTTCCAAACAAGTCGTGGTGTATACA...TGAGAGTTCATAGTTGTAACAGTGCTCAAGAGTTTGTCTGTGTTGTGCCCTCCA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000126664.8
CDS-3UTR CAA 90 bp TCATTCTGTGGAGGGCACAACACAGACAAACTCTTGAGCACTGTTACAACTATGCAGAATCAGCGCCTTTaGTATACACCACGACTTGTT +
Preference number: 5 (lower is better)
Translates to: SFCGGHNTDKLLSTVTTMQNQRL*YTPRLV
Trigger: AACAAGTCGTGGTGTATACAAAAGGCGCTGATTCTG...CATAGTTGTAACAGTGCTCAAGAGTTTGTCTGTGTTGTGCCCTCCACAGAATGA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000126664.8
CDS-3UTR CAA 90 bp CGTGATTTGTCACAGCAGAAACCTTGCTACAGACATCTCTACCCTTCAATATGTTGCACAAGGAGAAGTTaGCTGAGATGTCTGAACTGG +
Preference number: 5 (lower is better)
Translates to: RDLSQQKPCYRHLYPSICCTRRS*LRCLNW
Trigger: CCAGTTCAGACATCTCAGCAAACTTCTCCTTGTGCA...ACATATTGAAGGGTAGAGATGTCTGTAGCAAGGTTTCTGCTGTGACAAATCACG
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000126664.8
CDS GCA 90 bp CTTGTCGATTTTGTATTTCCGGTAGTCTTCCAAGCCATCTTTAATTaGAATAATTGTGAGGACCACCACCAGAGGCAGCATGGTGATTTC +
Preference number: 5 (lower is better)
Translates to: LVDFVFPVVFQAIFN*NNCEDHHQRQHGDF
Trigger: GAAATCACCATGCTGCCTCTGGTGGTGGTCCTCACAATTATTGCAATTAAAGATGGCTTGGAAGACTACCGGAAATACAAAATCGACAAG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000126664.8
ENSMUST00000169617.3
CDS-3UTR CAA 90 bp TCAATTTCAACCCATATCTCATTCTGTGGAGGGCACAACACAGACAAACTCTTGGAAGCAGACCAGGCTTaGATAAAAGGCATCCAACAA +
Preference number: 5 (lower is better)
Translates to: SISTHISFCGGHNTDKLLEADQA*IKGIQQ
Trigger: TTGTTGGATGCCTTTTATCAAAGCCTGGTCTGCTTC...CAAGAGTTTGTCTGTGTTGTGCCCTCCACAGAATGAGATATGGGTTGAAATTGA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000094710.8
ENSMUST00000126664.8
CDS-3UTR CAA 90 bp TCAATTTCAACCCATATCTCATTCTGTGGAGGGCACAACACAGACAAACTCTTGAGTCTGTCAAAGTACTaGGCTCTGAGAACTGGAGAT +
Preference number: 5 (lower is better)
Translates to: SISTHISFCGGHNTDKLLSLSKY*ALRTGD
Trigger: ATCTCCAGTTCTCAGAGCCAAGTACTTTGACAGACT...CAAGAGTTTGTCTGTGTTGTGCCCTCCACAGAATGAGATATGGGTTGAAATTGA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000094710.8
ENSMUST00000126664.8
CDS-3UTR CAA 90 bp CCAAAACCTTCTCTCATGGGAAATAAAAGGCTCTTGGGAATTTGTCCTCAAAAAAGCAGTTCCTCCCTGTaGTCAATGCTGGTTTCAGCT +
Preference number: 5 (lower is better)
Translates to: PKPSLMGNKRLLGICPQKSSSSL*SMLVSA
Trigger: AGCTGAAACCAGCATTGACAACAGGGAGGAACTGCT...TTTTTGAGGACAAATTCCCAAGAGCCTTTTATTTCCCATGAGAGAAGGTTTTGG
43% GC, longest homopolymer 6 nt, total homopolymer stretches 14 nt.
Matches the following 1 transcripts:
ENSMUST00000126664.8
CDS-3UTR CAA 90 bp GACATCTCTACCCTTCAATATGTTGATTTTTCTAAGAGCCTCGGAGATTCCCACGAAGTTCTTCCAAAATaGCACTCATCAGCATCCCAC +
Preference number: 5 (lower is better)
Translates to: DISTLQYVDFSKSLGDSHEVLPK*HSSASH
Trigger: GTGGGATGCTGATGAGTGCAATTTTGGAAGAACTTC...GTGGGAATCTCCGAGGCTCTTAGAAAAATCAACATATTGAAGGGTAGAGATGTC
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000126664.8
CDS-3UTR CAA 90 bp TCAATTTCAACCCATATCTCATTCTGTGGAGGGCACAACACAGACAAACTCTTGCCCAATGTCGGCCACTaGTATCATGCTAACATCATT +
Preference number: 5 (lower is better)
Translates to: SISTHISFCGGHNTDKLLPNVGH*YHANII
Trigger: AATGATGTTAGCATGATACAAGTGGCCGACATTGGG...CAAGAGTTTGTCTGTGTTGTGCCCTCCACAGAATGAGATATGGGTTGAAATTGA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000126664.8
CDS TCA 90 bp GAGGTTGAAGAAGATCAGCACCCAGTAGTCTGTCATAGATGTTCCTaGAAACCCACAAAAGAACTGGTACCAGAAAAGGAGATTCACATA +
Preference number: 5 (lower is better)
Translates to: EVEEDQHPVVCHRCS*KPTKELVPEKEIHI
Trigger: TATGTGAATCTCCTTTTCTGGTACCAGTTCTTTTGTGGGTTTTCAGGAACATCTATGACAGACTACTGGGTGCTGATCTTCTTCAACCTC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000126664.8
CDS-3UTR CAA 90 bp GAGGTTCTTGGTTTTTCCATGCCAAGCAAAATGCTGACATCCCTTGTACAAAGCAAGTTGTTGATCTGCTaGTCGATTTTGTATTTCCGG +
Preference number: 5 (lower is better)
Translates to: EVLGFSMPSKMLTSLVQSKLLIC*SILYFR
Trigger: CCGGAAATACAAAATCGACAAGCAGATCAACAACTT...GCTTTGTACAAGGGATGTCAGCATTTTGCTTGGCATGGAAAAACCAAGAACCTC
42% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000126664.8
CDS-3UTR CAA 90 bp GACATCTCTACCCTTCAATATGTTGATTTTTCTAAGAGCCTCGGAGATTCCCACCCAAGTAACGTGAGTTaGTTTTCTAGTCTCATGGCA +
Preference number: 5 (lower is better)
Translates to: DISTLQYVDFSKSLGDSHPSNVS*FSSLMA
Trigger: TGCCATGAGACTAGAAAACAAACTCACGTTACTTGG...GTGGGAATCTCCGAGGCTCTTAGAAAAATCAACATATTGAAGGGTAGAGATGTC
42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000126664.8
CDS-3UTR CAA 90 bp CTTTGTTTACAAATGTGCTCACAGGTATACAATGATAGAGAGGTTCTTGGTTTTGATGTGAAGAGGAGGTaGAAGAAGATCAGCACCCAG +
Preference number: 5 (lower is better)
Translates to: LCLQMCSQVYNDREVLGFDVKRR*KKISTQ
Trigger: CTGGGTGCTGATCTTCTTCAACCTCCTCTTCACATC...AAAACCAAGAACCTCTCTATCATTGTATACCTGTGAGCACATTTGTAAACAAAG
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000094710.8
ENSMUST00000126664.8
CDS-3UTR CAA 90 bp GTATCAATTTCAACCCATATCTCATTCTGTGGAGGGCACAACACAGACAAACTCGTTCAAATAAGTTTCTaGGCACAAAGTTCAGGAGTG +
Preference number: 5 (lower is better)
Translates to: VSISTHISFCGGHNTDKLVQISF*AQSSGV
Trigger: CACTCCTGAACTTTGTGCCAAGAAACTTATTTGAAC...GAGTTTGTCTGTGTTGTGCCCTCCACAGAATGAGATATGGGTTGAAATTGATAC
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000126664.8
CDS-3UTR CAA 90 bp AAACCTTCTCTCATGGGAAATAAAAGGCTCTTGGGAATTTGTCCTCAAAAATTATACCGTGGCCCACTGTaGTTCAGCATTGCTTTGGTT +
Preference number: 5 (lower is better)
Translates to: KPSLMGNKRLLGICPQKLYRGPL*FSIALV
Trigger: AACCAAAGCAATGCTGAACAACAGTGGGCCACGGTA...TAATTTTTGAGGACAAATTCCCAAGAGCCTTTTATTTCCCATGAGAGAAGGTTT
41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000126664.8
CDS-3UTR CAA 90 bp AAACCTTCTCTCATGGGAAATAAAAGGCTCTTGGGAATTTGTCCTCAAAAATTAGAAACCACCACCGTGTaGCAAATTGCCAGTGCAATA +
Preference number: 5 (lower is better)
Translates to: KPSLMGNKRLLGICPQKLETTTV*QIASAI
Trigger: TATTGCACTGGCAATTTGCAACACGGTGGTGGTTTC...TAATTTTTGAGGACAAATTCCCAAGAGCCTTTTATTTCCCATGAGAGAAGGTTT
40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000126664.8
CDS-3UTR CAA 90 bp AAACCTTCTCTCATGGGAAATAAAAGGCTCTTGGGAATTTGTCCTCAAAAATTAAATCGGCTGAGGTCATaGTTTGGACTTTCACATTCT +
Preference number: 5 (lower is better)
Translates to: KPSLMGNKRLLGICPQKLNRLRS*FGLSHS
Trigger: AGAATGTGAAAGTCCAAACAATGACCTCAGCCGATT...TAATTTTTGAGGACAAATTCCCAAGAGCCTTTTATTTCCCATGAGAGAAGGTTT
38% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000126664.8
CDS CCA 72 bp GGGCTCTCCCATGGCTCAGCCGACGCCAGTGATGTCTaGCCCACTGCAGCAGCTCAGTCATGCCCAAGACGC +
Preference number: 6 (lower is better)
Translates to: GLSHGSADASDV*PTAAAQSCPRR
Trigger: GCGTCTTGGGCATGACTGAGCTGCTGCAGTGGGCCAGACATCACTGGCGTCGGCTGAGCCATGGGAGAGCCC
65% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000126664.8
ENSMUST00000169617.3
CDS TCA 72 bp TCCTGCAGCCCTGGGCTCTGGGTCTCGCCATGTTGCTaGGGGAGCCGCCGAGAGTGTCTGTGCATTCCTCCT +
Preference number: 6 (lower is better)
Translates to: SCSPGLWVSPCC*GSRRECLCIPP
Trigger: AGGAGGAATGCACAGACACTCTCGGCGGCTCCCTCAGCAACATGGCGAGACCCAGAGCCCAGGGCTGCAGGA
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000126664.8
CDS TCA 72 bp TCTCCATTTCCTACAGCAGAGGTGCTCCCGGAGAGCTaGGCCGAGGGCTTTCCCAGAGGCCCACTGGGAACT +
Preference number: 6 (lower is better)
Translates to: SPFPTAEVLPES*AEGFPRGPLGT
Trigger: AGTTCCCAGTGGGCCTCTGGGAAAGCCCTCGGCTCAGCTCTCCGGGAGCACCTCTGCTGTAGGAAATGGAGA
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000126664.8
CDS GCA 72 bp CTTCCCCAGATCCTTCTCCATTTCCTACAGCAGAGGTaGTCCCGGAGAGCTGAGCCGAGGGCTTTCCCAGAG +
Preference number: 6 (lower is better)
Translates to: LPQILLHFLQQR*SRRAEPRAFPE
Trigger: CTCTGGGAAAGCCCTCGGCTCAGCTCTCCGGGAGCACCTCTGCTGTAGGAAATGGAGAAGGATCTGGGGAAG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000126664.8
CDS GCA 72 bp GCTTGGCACCACGCGGTCAGCTCAAGGAACTGCCTTTaGAGACTCTCCTGCAGGGCAAACTCCAGGGTCTTC +
Preference number: 6 (lower is better)
Translates to: AWHHAVSSRNCL*RLSCRANSRVF
Trigger: GAAGACCCTGGAGTTTGCCCTGCAGGAGAGTCTGCAAAGGCAGTTCCTTGAGCTGACCGCGTGGTGCCAAGC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000126664.8
CDS CCA 72 bp CTGCTTCATCTGGACTCTCCGCCTCATAGCACAGGTTaGAAGCCGAGGGCGGTGGTCCACTTAGGGCTTCAG +
Preference number: 6 (lower is better)
Translates to: LLHLDSPPHSTG*KPRAVVHLGLQ
Trigger: CTGAAGCCCTAAGTGGACCACCGCCCTCGGCTTCCAACCTGTGCTATGAGGCGGAGAGTCCAGATGAAGCAG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000126664.8
CDS CAA 90 bp GCAGATCACAGCTTGGCACCACGCGGTCAGCTCAAGGAACTGCCTTaGCAGACTCTCCTGCAGGGCAAACTCCAGGGTCTTCCCAGTGAT +
Preference number: 6 (lower is better)
Translates to: ADHSLAPRGQLKELP*QTLLQGKLQGLPSD
Trigger: ATCACTGGGAAGACCCTGGAGTTTGCCCTGCAGGAGAGTCTGCAAAGGCAGTTCCTTGAGCTGACCGCGTGGTGCCAAGCTGTGATCTGC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000126664.8
CDS GCA 72 bp ATCACAGCTTGGCACCACGCGGTCAGCTCAAGGAACTaGCTTTGCAGACTCTCCTGCAGGGCAAACTCCAGG +
Preference number: 6 (lower is better)
Translates to: ITAWHHAVSSRN*LCRLSCRANSR
Trigger: CCTGGAGTTTGCCCTGCAGGAGAGTCTGCAAAGGCAGTTCCTTGAGCTGACCGCGTGGTGCCAAGCTGTGAT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000126664.8
CDS CCA 72 bp AGGCACAGGGAGTCCCAGAGGATGAATCCTTCCCACTaGCAAGGGACGGTGAACTTGATCTCCGGACGGACA +
Preference number: 6 (lower is better)
Translates to: RHRESQRMNPSH*QGTVNLISGRT
Trigger: TGTCCGTCCGGAGATCAAGTTCACCGTCCCTTGCCAGTGGGAAGGATTCATCCTCTGGGACTCCCTGTGCCT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000126664.8
CDS CAA 72 bp AGCTTGGCACCACGCGGTCAGCTCAAGGAACTGCCTTaGCAGACTCTCCTGCAGGGCAAACTCCAGGGTCTT +
Preference number: 6 (lower is better)
Translates to: SLAPRGQLKELP*QTLLQGKLQGL
Trigger: AAGACCCTGGAGTTTGCCCTGCAGGAGAGTCTGCAAAGGCAGTTCCTTGAGCTGACCGCGTGGTGCCAAGCT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000126664.8
CDS TCA 72 bp TCCCCTGTCAGCATCCAGATCTTGATGCCAGCTTGGTaGAGGGCTTCTATAGACTCAGGGACCCCCTCCTGC +
Preference number: 6 (lower is better)
Translates to: SPVSIQILMPAW*RASIDSGTPSC
Trigger: GCAGGAGGGGGTCCCTGAGTCTATAGAAGCCCTTCACCAAGCTGGCATCAAGATCTGGATGCTGACAGGGGA
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000126664.8
CDS CCA 72 bp CCTTCTTTGCTACACATAGAGTGCGCAGCCCTCGTTTaGCATACTCGTCCAGGTGCCTCTGCGTTCTCTCCC +
Preference number: 6 (lower is better)
Translates to: PSLLHIECAALV*HTRPGASAFSP
Trigger: GGGAGAGAACGCAGAGGCACCTGGACGAGTATGCCAAACGAGGGCTGCGCACTCTATGTGTAGCAAAGAAGG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000126664.8
CDS GCA 72 bp GCTCATCCCAGCATGGTGTTACCTCGGATCCCAAAGTaGCAAAAGAGAACGGAGCAGAGATCCAAAGGGCGG +
Preference number: 6 (lower is better)
Translates to: AHPSMVLPRIPK*QKRTEQRSKGR
Trigger: CCGCCCTTTGGATCTCTGCTCCGTTCTCTTTTGGCACTTTGGGATCCGAGGTAACACCATGCTGGGATGAGC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000126664.8
ENSMUST00000169617.3
CDS GCA 72 bp ATGGGCATTCCACCCAGTGAGGAGAGTCCAATCTTTTaGCGAGGTTGGTTCGGTGCAGAAACCACCACCGTG +
Preference number: 6 (lower is better)
Translates to: MGIPPSEESPIF*RGWFGAETTTV
Trigger: CACGGTGGTGGTTTCTGCACCGAACCAACCTCGGCAAAAGATTGGACTCTCCTCACTGGGTGGAATGCCCAT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000126664.8
CDS GCA 72 bp GCGGTCAGCTCAAGGAACTGCCTTTGCAGACTCTCCTaGAGGGCAAACTCCAGGGTCTTCCCAGTGATAACA +
Preference number: 6 (lower is better)
Translates to: AVSSRNCLCRLS*RANSRVFPVIT
Trigger: TGTTATCACTGGGAAGACCCTGGAGTTTGCCCTGCAGGAGAGTCTGCAAAGGCAGTTCCTTGAGCTGACCGC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000126664.8
CDS CAA 72 bp ACCTTCTTTGCTACACATAGAGTGCGCAGCCCTCGTTaGGCATACTCGTCCAGGTGCCTCTGCGTTCTCTCC +
Preference number: 6 (lower is better)
Translates to: TFFATHRVRSPR*AYSSRCLCVLS
Trigger: GGAGAGAACGCAGAGGCACCTGGACGAGTATGCCAAACGAGGGCTGCGCACTCTATGTGTAGCAAAGAAGGT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000126664.8
CDS CAA 72 bp GGCCCTGAGCGTCAGAGGGCTGAGGAAAGTTCTTTCTaGATGATGCCAGCTCCGGAGACACTTGAGCTCTCT +
Preference number: 6 (lower is better)
Translates to: GPERQRAEESSF*MMPAPETLELS
Trigger: AGAGAGCTCAAGTGTCTCCGGAGCTGGCATCATCAAGAAAGAACTTTCCTCAGCCCTCTGACGCTCAGGGCC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000126664.8
CDS CCA 72 bp CTGGGGTCCGAGACTGTAAAGTGCAACGGTAAGCTCTaGCGGCATACACCAAAGCTGCTTCATCTGGACTCT +
Preference number: 6 (lower is better)
Translates to: LGSETVKCNGKL*RHTPKLLHLDS
Trigger: AGAGTCCAGATGAAGCAGCTTTGGTGTATGCCGCCAGAGCTTACCGTTGCACTTTACAGTCTCGGACCCCAG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000126664.8
CDS GCA 72 bp AGAGTGCGCAGCCCTCGTTTGGCATACTCGTCCAGGTaGCTCTGCGTTCTCTCCCTTATTATCATCTGTTGT +
Preference number: 6 (lower is better)
Translates to: RVRSPRLAYSSR*LCVLSLIIICC
Trigger: ACAACAGATGATAATAAGGGAGAGAACGCAGAGGCACCTGGACGAGTATGCCAAACGAGGGCTGCGCACTCT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000126664.8
CDS CCA 72 bp CCACCCAGTGAGGAGAGTCCAATCTTTTGCCGAGGTTaGTTCGGTGCAGAAACCACCACCGTGTTGCAAATT +
Preference number: 6 (lower is better)
Translates to: PPSEESPIFCRG*FGAETTTVLQI
Trigger: AATTTGCAACACGGTGGTGGTTTCTGCACCGAACCAACCTCGGCAAAAGATTGGACTCTCCTCACTGGGTGG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000126664.8
CDS CAA 72 bp GAAAAGAGTAAGACCATGTCTGCAGGGATGATCTCATaGCAGGACAGGCGGATGAAGTCCCCGACGGTGACA +
Preference number: 6 (lower is better)
Translates to: EKSKTMSAGMIS*QDRRMKSPTVT
Trigger: TGTCACCGTCGGGGACTTCATCCGCCTGTCCTGCAATGAGATCATCCCTGCAGACATGGTCTTACTCTTTTC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000126664.8
CDS CAA 90 bp AAGATGCTCCCAACCGTGACCAGCATGTGGATCCAAGTCAAACTCTaGCTTTCAATCACCAGGTGGAGGAGAATGATGAACAGAGCCGCC +
Preference number: 6 (lower is better)
Translates to: KMLPTVTSMWIQVKL*LSITRWRRMMNRAA
Trigger: GGCGGCTCTGTTCATCATTCTCCTCCACCTGGTGATTGAAAGCAAGAGTTTGACTTGGATCCACATGCTGGTCACGGTTGGGAGCATCTT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000094710.8
ENSMUST00000126664.8
CDS CAA 90 bp TCACTCATGACCTTCTTTGCTACACATAGAGTGCGCAGCCCTCGTTaGGCATACTCGTCCAGGTGCCTCTGCGTTCTCTCCCTTATTATC +
Preference number: 6 (lower is better)
Translates to: SLMTFFATHRVRSPR*AYSSRCLCVLSLII
Trigger: GATAATAAGGGAGAGAACGCAGAGGCACCTGGACGAGTATGCCAAACGAGGGCTGCGCACTCTATGTGTAGCAAAGAAGGTCATGAGTGA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000126664.8
CDS TCA 72 bp ATAGCAGCTGATTGGCTGGCATGCTTAGATGCCACGTaGTTGACCTTTGCTGTCCCTCTCCACCTCTTGAGA +
Preference number: 6 (lower is better)
Translates to: IAADWLACLDAT*LTFAVPLHLLR
Trigger: TCTCAAGAGGTGGAGAGGGACAGCAAAGGTCAATCACGTGGCATCTAAGCATGCCAGCCAATCAGCTGCTAT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000094710.8
ENSMUST00000126664.8
CDS TCA 72 bp CTCACGTGTGCTCTGCTCAACAGTAGACACTGTTGCTaGCTTCATTGCAAGGACAGCAGAAGACCCAGGTGT +
Preference number: 6 (lower is better)
Translates to: LTCALLNSRHCC*LHCKDSRRPRC
Trigger: ACACCTGGGTCTTCTGCTGTCCTTGCAATGAAGTCAGCAACAGTGTCTACTGTTGAGCAGAGCACACGTGAG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000094710.8
ENSMUST00000126664.8
CDS TCA 72 bp CATAGACCACAATGCCCACCACAGCCTCTGTGTTTCTaGTGGTGCACCCGCGGAGCAATAAATTCTCTTTGC +
Preference number: 6 (lower is better)
Translates to: HRPQCPPQPLCF*WCTRGAINSLC
Trigger: GCAAAGAGAATTTATTGCTCCGCGGGTGCACCATCAGAAACACAGAGGCTGTGGTGGGCATTGTGGTCTATG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000126664.8
CDS TCA 72 bp AATCTCTTCCAAGGACTTGATGGGCATTCCACCCAGTaGGGAGAGTCCAATCTTTTGCCGAGGTTGGTTCGG +
Preference number: 6 (lower is better)
Translates to: NLFQGLDGHSTQ*GESNLLPRLVR
Trigger: CCGAACCAACCTCGGCAAAAGATTGGACTCTCCTCACTGGGTGGAATGCCCATCAAGTCCTTGGAAGAGATT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000126664.8
CDS TCA 72 bp GGCCCTGTTTTGTGCCTCTGTTTCTGTACAGCAAGCTaGGTTACTGGCCTGGGGGATTTCATCCATTTGGGA +
Preference number: 6 (lower is better)
Translates to: GPVLCLCFCTAS*VTGLGDFIHLG
Trigger: TCCCAAATGGATGAAATCCCCCAGGCCAGTAACTCAGCTTGCTGTACAGAAACAGAGGCACAAAACAGGGCC
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000126664.8
CDS TCA 72 bp GATTCCTCAGCCACTCTGCATATTCCGTGTCACTCATaGCCTTCTTTGCTACACATAGAGTGCGCAGCCCTC +
Preference number: 6 (lower is better)
Translates to: DSSATLHIPCHS*PSLLHIECAAL
Trigger: GAGGGCTGCGCACTCTATGTGTAGCAAAGAAGGTCATGAGTGACACGGAATATGCAGAGTGGCTGAGGAATC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000126664.8
CDS CAA 72 bp TCAGCTCTCTCCTCTGGAGGTAGTCTGTCAAAGTACTaGGCTCTGAGAACTGGAGATGGAAACACGGATCCC +
Preference number: 6 (lower is better)
Translates to: SALSSGGSLSKY*ALRTGDGNTDP
Trigger: GGGATCCGTGTTTCCATCTCCAGTTCTCAGAGCCAAGTACTTTGACAGACTACCTCCAGAGGAGAGAGCTGA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000094710.8
ENSMUST00000126664.8
CDS CAA 90 bp CCGCGGAGCAATAAATTCTCTTTGCTGAGGCCCACACGTTCTTTATaGGCATGTTCCAGGAAGCCTCGGAATCGGCTGAGGTCATTGTTT +
Preference number: 6 (lower is better)
Translates to: PRSNKFSLLRPTRSL*ACSRKPRNRLRSLF
Trigger: AAACAATGACCTCAGCCGATTCCGAGGCTTCCTGGAACATGCCAATAAAGAACGTGTGGGCCTCAGCAAAGAGAATTTATTGCTCCGCGG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000126664.8
CDS TCA 72 bp AATAAAGAAGTCCATGATGTACAAAGTCTCCAGCGGTaGACTCTGAGCGGTGCCATCCAGTCCAGTGAGCAG +
Preference number: 6 (lower is better)
Translates to: NKEVHDVQSLQR*TLSGAIQSSEQ
Trigger: CTGCTCACTGGACTGGATGGCACCGCTCAGAGTTCACCGCTGGAGACTTTGTACATCATGGACTTCTTTATT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000126664.8
CDS GCA 72 bp GCTCCGGTAAAGTTCAGGCAGCTGCAGGAGGGTCTCTaGCGAAACATCTTTCTCCAAAACGCCATAAATGAT +
Preference number: 6 (lower is better)
Translates to: APVKFRQLQEGL*RNIFLQNAIND
Trigger: ATCATTTATGGCGTTTTGGAGAAAGATGTTTCGGCAGAGACCCTCCTGCAGCTGCCTGAACTTTACCGGAGC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000094710.8
ENSMUST00000126664.8
CDS CAA 72 bp GCATGTTCCAGGAAGCCTCGGAATCGGCTGAGGTCATaGTTTGGACTTTCACATTCTATCCTGCTGGAGAAC +
Preference number: 6 (lower is better)
Translates to: ACSRKPRNRLRS*FGLSHSILLEN
Trigger: GTTCTCCAGCAGGATAGAATGTGAAAGTCCAAACAATGACCTCAGCCGATTCCGAGGCTTCCTGGAACATGC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000126664.8
CDS TCA 72 bp TCTCCTCTGGAGGTAGTCTGTCAAAGTACTTGGCTCTaGGAACTGGAGATGGAAACACGGATCCCTGAAGAA +
Preference number: 6 (lower is better)
Translates to: SPLEVVCQSTWL*ELEMETRIPEE
Trigger: TTCTTCAGGGATCCGTGTTTCCATCTCCAGTTCTCAGAGCCAAGTACTTTGACAGACTACCTCCAGAGGAGA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000094710.8
ENSMUST00000126664.8
CDS TCA 72 bp GTTCCAGAAAACCTTTCGTACTCATCTTTGAAGCACTaGAGGTGGGGAATAACGACGCGGTGCTTTCCTGCA +
Preference number: 6 (lower is better)
Translates to: VPENLSYSSLKH*RWGITTRCFPA
Trigger: TGCAGGAAAGCACCGCGTCGTTATTCCCCACCTTCAGTGCTTCAAAGATGAGTACGAAAGGTTTTCTGGAAC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000126664.8
ENSMUST00000169617.3
CDS TCA 72 bp AAGAGCATGTTCTCATACCTGCTCAGCCATATGCCGTaGCCCAGTGCACCAGTTAAGCACATGACAATCAGA +
Preference number: 6 (lower is better)
Translates to: KSMFSYLLSHMP*PSAPVKHMTIR
Trigger: TCTGATTGTCATGTGCTTAACTGGTGCACTGGGTCACGGCATATGGCTGAGCAGGTATGAGAACATGCTCTT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000126664.8
CDS TCA 72 bp AAAATGTTAATGAGCCCAAAGCAGCAAAGTCCACCATaGCCTGCTCTGGGGTCCGAGACTGTAAAGTGCAAC +
Preference number: 6 (lower is better)
Translates to: KMLMSPKQQSPP*PALGSETVKCN
Trigger: GTTGCACTTTACAGTCTCGGACCCCAGAGCAGGTCATGGTGGACTTTGCTGCTTTGGGCTCATTAACATTTT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000126664.8
CDS TCA 72 bp TCCTCCCTGTTGTCAATGCTGGTTTCAGCTAGAAAGTaGTTCCTCAGCCACTCTGCATATTCCGTGTCACTC +
Preference number: 6 (lower is better)
Translates to: SSLLSMLVSARK*FLSHSAYSVSL
Trigger: GAGTGACACGGAATATGCAGAGTGGCTGAGGAATCACTTTCTAGCTGAAACCAGCATTGACAACAGGGAGGA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000126664.8
CDS CCA 72 bp AAATTGCTCTCTCCATCAAGGCCGGAAGTCTCAATGTaGCAGATGCCATCTGGGTCTGTGGAAAAGAGTAAG +
Preference number: 6 (lower is better)
Translates to: KLLSPSRPEVSM*QMPSGSVEKSK
Trigger: CTTACTCTTTTCCACAGACCCAGATGGCATCTGCCACATTGAGACTTCCGGCCTTGATGGAGAGAGCAATTT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000126664.8
CDS CCA 72 bp TTTGTGCCTCTGTTTCTGTACAGCAAGCTGAGTTACTaGCCTGGGGGATTTCATCCATTTGGGAAGACTCGT +
Preference number: 6 (lower is better)
Translates to: FVPLFLYSKLSY*PGGFHPFGKTR
Trigger: ACGAGTCTTCCCAAATGGATGAAATCCCCCAGGCCAGTAACTCAGCTTGCTGTACAGAAACAGAGGCACAAA
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000126664.8
CDS CAA 72 bp AATAAATTCTCTTTGCTGAGGCCCACACGTTCTTTATaGGCATGTTCCAGGAAGCCTCGGAATCGGCTGAGG +
Preference number: 6 (lower is better)
Translates to: NKFSLLRPTRSL*ACSRKPRNRLR
Trigger: CCTCAGCCGATTCCGAGGCTTCCTGGAACATGCCAATAAAGAACGTGTGGGCCTCAGCAAAGAGAATTTATT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000126664.8
CDS CAA 72 bp TTTCTGATGGTGCACCCGCGGAGCAATAAATTCTCTTaGCTGAGGCCCACACGTTCTTTATTGGCATGTTCC +
Preference number: 6 (lower is better)
Translates to: FLMVHPRSNKFS*LRPTRSLLACS
Trigger: GGAACATGCCAATAAAGAACGTGTGGGCCTCAGCAAAGAGAATTTATTGCTCCGCGGGTGCACCATCAGAAA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000126664.8
CDS CAA 90 bp TCTTTATTGGCATGTTCCAGGAAGCCTCGGAATCGGCTGAGGTCATaGTTTGGACTTTCACATTCTATCCTGCTGGAGAACTTCTCCGGA +
Preference number: 6 (lower is better)
Translates to: SLLACSRKPRNRLRS*FGLSHSILLENFSG
Trigger: TCCGGAGAAGTTCTCCAGCAGGATAGAATGTGAAAGTCCAAACAATGACCTCAGCCGATTCCGAGGCTTCCTGGAACATGCCAATAAAGA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000126664.8
CDS CAA 90 bp CAGCTCCATGATAACAGAATCAGCGCCTTTTGTATACACCACGACTaGTTTGGAAAGAGGATGCCTGACCACGACCGACATTCTTTTCCT +
Preference number: 6 (lower is better)
Translates to: QLHDNRISAFCIHHD*FGKRMPDHDRHSFP
Trigger: AGGAAAAGAATGTCGGTCGTGGTCAGGCATCCTCTTTCCAAACAAGTCGTGGTGTATACAAAAGGCGCTGATTCTGTTATCATGGAGCTG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000126664.8
CDS TCA 72 bp CTTTATTGGCATGTTCCAGGAAGCCTCGGAATCGGCTaGGGTCATTGTTTGGACTTTCACATTCTATCCTGC +
Preference number: 6 (lower is better)
Translates to: LYWHVPGSLGIG*GHCLDFHILSC
Trigger: GCAGGATAGAATGTGAAAGTCCAAACAATGACCTCAGCCGATTCCGAGGCTTCCTGGAACATGCCAATAAAG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000126664.8
CDS TCA 72 bp CATAGAGAGAAATGGGGATCAGGACCTGCAGCAAGATaGTCATGGTCCAGAACACATAGAATCCAGTCAGCA +
Preference number: 6 (lower is better)
Translates to: HREKWGSGPAAR*SWSRTHRIQSA
Trigger: TGCTGACTGGATTCTATGTGTTCTGGACCATGATCATCTTGCTGCAGGTCCTGATCCCCATTTCTCTCTATG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000126664.8
CDS GCA 72 bp CGGTGCAGAAACCACCACCGTGTTGCAAATTGCCAGTaGAATAAAGAAGTCCATGATGTACAAAGTCTCCAG +
Preference number: 6 (lower is better)
Translates to: RCRNHHRVANCQ*NKEVHDVQSLQ
Trigger: CTGGAGACTTTGTACATCATGGACTTCTTTATTGCACTGGCAATTTGCAACACGGTGGTGGTTTCTGCACCG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000126664.8
CDS GCA 72 bp AGACACTTGAGCTCTCTTCTGAAGTTCTTCCAAAATTaGACTCATCAGCATCCCACAGGCATCCTGACTCTG +
Preference number: 6 (lower is better)
Translates to: RHLSSLLKFFQN*THQHPTGILTL
Trigger: CAGAGTCAGGATGCCTGTGGGATGCTGATGAGTGCAATTTTGGAAGAACTTCAGAAGAGAGCTCAAGTGTCT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000126664.8
CDS CAA 72 bp ACAGAATCAGCGCCTTTTGTATACACCACGACTTGTTaGGAAAGAGGATGCCTGACCACGACCGACATTCTT +
Preference number: 6 (lower is better)
Translates to: TESAPFVYTTTC*ERGCLTTTDIL
Trigger: AAGAATGTCGGTCGTGGTCAGGCATCCTCTTTCCAAACAAGTCGTGGTGTATACAAAAGGCGCTGATTCTGT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000126664.8
CDS CAA 72 bp GATAACAGAATCAGCGCCTTTTGTATACACCACGACTaGTTTGGAAAGAGGATGCCTGACCACGACCGACAT +
Preference number: 6 (lower is better)
Translates to: DNRISAFCIHHD*FGKRMPDHDRH
Trigger: ATGTCGGTCGTGGTCAGGCATCCTCTTTCCAAACAAGTCGTGGTGTATACAAAAGGCGCTGATTCTGTTATC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000126664.8
CDS CAA 72 bp GAGACACTTGAGCTCTCTTCTGAAGTTCTTCCAAAATaGCACTCATCAGCATCCCACAGGCATCCTGACTCT +
Preference number: 6 (lower is better)
Translates to: ETLELSSEVLPK*HSSASHRHPDS
Trigger: AGAGTCAGGATGCCTGTGGGATGCTGATGAGTGCAATTTTGGAAGAACTTCAGAAGAGAGCTCAAGTGTCTC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000126664.8
CDS GCA 72 bp CCTTTTGTATACACCACGACTTGTTTGGAAAGAGGATaGCTGACCACGACCGACATTCTTTTCCTTACAGAG +
Preference number: 6 (lower is better)
Translates to: PFVYTTTCLERG*LTTTDILFLTE
Trigger: CTCTGTAAGGAAAAGAATGTCGGTCGTGGTCAGGCATCCTCTTTCCAAACAAGTCGTGGTGTATACAAAAGG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000126664.8
CDS CCA 72 bp ATAAGTTTCTTGGCACAAAGTTCAGGAGTGTGTACTTaGTCGTCCGTATCCGGTTATTCACGTAGGTTCCAG +
Preference number: 6 (lower is better)
Translates to: ISFLAQSSGVCT*SSVSGYSRRFQ
Trigger: CTGGAACCTACGTGAATAACCGGATACGGACGACCAAGTACACACTCCTGAACTTTGTGCCAAGAAACTTAT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000126664.8
ENSMUST00000169617.3
CDS CAA 72 bp GTAGGTAAAGTAAGGCACGAAGAAGCAGACCAGGCTTaGATAAAAGGCATCCAACAAGGTGATCCAGAAGGT +
Preference number: 6 (lower is better)
Translates to: VGKVRHEEADQA*IKGIQQGDPEG
Trigger: ACCTTCTGGATCACCTTGTTGGATGCCTTTTATCAAAGCCTGGTCTGCTTCTTCGTGCCTTACTTTACCTAC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000094710.8
ENSMUST00000126664.8
CDS CAA 90 bp TCCATGATAACAGAATCAGCGCCTTTTGTATACACCACGACTTGTTaGGAAAGAGGATGCCTGACCACGACCGACATTCTTTTCCTTACA +
Preference number: 6 (lower is better)
Translates to: SMITESAPFVYTTTC*ERGCLTTTDILFLT
Trigger: TGTAAGGAAAAGAATGTCGGTCGTGGTCAGGCATCCTCTTTCCAAACAAGTCGTGGTGTATACAAAAGGCGCTGATTCTGTTATCATGGA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000126664.8
CDS TCA 72 bp TTGTATACACCACGACTTGTTTGGAAAGAGGATGCCTaGCCACGACCGACATTCTTTTCCTTACAGAGTCAA +
Preference number: 6 (lower is better)
Translates to: LYTPRLVWKEDA*PRPTFFSLQSQ
Trigger: TTGACTCTGTAAGGAAAAGAATGTCGGTCGTGGTCAGGCATCCTCTTTCCAAACAAGTCGTGGTGTATACAA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000126664.8
CDS TCA 72 bp CCTTATTATCATCTGTTGTTCTGGATTTGTTCCATCTaGGGCAGCCACAGACAGCAGCTCCATGATAACAGA +
Preference number: 6 (lower is better)
Translates to: PYYHLLFWICSI*GSHRQQLHDNR
Trigger: TCTGTTATCATGGAGCTGCTGTCTGTGGCTGCCTCAGATGGAACAAATCCAGAACAACAGATGATAATAAGG
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000126664.8
CDS TCA 72 bp GAAGATCAGCACCCAGTAGTCTGTCATAGATGTTCCTaGAAACCCACAAAAGAACTGGTACCAGAAAAGGAG +
Preference number: 6 (lower is better)
Translates to: EDQHPVVCHRCS*KPTKELVPEKE
Trigger: CTCCTTTTCTGGTACCAGTTCTTTTGTGGGTTTTCAGGAACATCTATGACAGACTACTGGGTGCTGATCTTC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000126664.8
CDS GCA 72 bp TTGGTTCGGTGCAGAAACCACCACCGTGTTGCAAATTaGCAGTGCAATAAAGAAGTCCATGATGTACAAAGT +
Preference number: 6 (lower is better)
Translates to: LVRCRNHHRVAN*QCNKEVHDVQS
Trigger: ACTTTGTACATCATGGACTTCTTTATTGCACTGGCAATTTGCAACACGGTGGTGGTTTCTGCACCGAACCAA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000126664.8
CDS CAA 72 bp CGATCCTCAATGCCAGTAGCACCAAGTAACGTGAGTTaGTTTTCTAGTCTCATGGCAGATTCAACTAGCAGT +
Preference number: 6 (lower is better)
Translates to: RSSMPVAPSNVS*FSSLMADSTSS
Trigger: ACTGCTAGTTGAATCTGCCATGAGACTAGAAAACAAACTCACGTTACTTGGTGCTACTGGCATTGAGGATCG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000126664.8
CDS TCA 72 bp CCATTTTCTCGTTGTAGAAATCTACATCGCTCTGGATaGAATAGATCTGCCCAAGCTTCACGATCTCAATGG +
Preference number: 6 (lower is better)
Translates to: PFSRCRNLHRSG*NRSAQASRSQW
Trigger: CCATTGAGATCGTGAAGCTTGGGCAGATCTATTTCATCCAGAGCGATGTAGATTTCTACAACGAGAAAATGG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000126664.8
CDS GCA 72 bp TTTGTATTTCCGGTAGTCTTCCAAGCCATCTTTAATTaGAATAATTGTGAGGACCACCACCAGAGGCAGCAT +
Preference number: 6 (lower is better)
Translates to: FVFPVVFQAIFN*NNCEDHHQRQH
Trigger: ATGCTGCCTCTGGTGGTGGTCCTCACAATTATTGCAATTAAAGATGGCTTGGAAGACTACCGGAAATACAAA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000126664.8
ENSMUST00000169617.3