Pregenerated sensors for ATOH7 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000036816Ensembl transcript IDs: ENSMUST00000044059.5
Found 15 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR-3UTR TCA 90 bp | TTATACATGCAAGACAAGTCCTCTACAAACTCGGCTAGACCCCAGCCCCGTTGTCGCGATGTCCACTCATaGAACCTACAAAACACAAGA | + |
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Preference number: 2 (lower is better) Translates to: LYMQDKSSTNSARPQPRCRDVHS*NLQNTR Trigger: TCTTGTGTTTTGTAGGTTTCATGAGTGGACATCGCG...ACAACGGGGCTGGGGTCTAGCCGAGTTTGTAGAGGACTTGTCTTGCATGTATAA 48% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000044059.5 |
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| 3UTR-3UTR TCA 90 bp | AGCATTATTTTCACAGCAGTCCAAAGTCATTCGCGATGTCCACTCATGAAACCTTTTCATCTACCTGTTTaGAACGGGAAGGAAATTAAG | + |
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Preference number: 2 (lower is better) Translates to: SIIFTAVQSHSRCPLMKPFHLPV*NGKEIK Trigger: CTTAATTTCCTTCCCGTTTCAAACAGGTAGATGAAA...AGGTTTCATGAGTGGACATCGCGAATGACTTTGGACTGCTGTGAAAATAATGCT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000044059.5 |
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| 3UTR TCA 72 bp | TCACAGCAGTCCAAAGTCATTCGCGATGTCCACTCATaGAACCTACAAAACACAAGAGAAGTGGAGATAGGG | + |
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Preference number: 3 (lower is better) Translates to: SQQSKVIRDVHS*NLQNTREVEIG Trigger: CCCTATCTCCACTTCTCTTGTGTTTTGTAGGTTTCATGAGTGGACATCGCGAATGACTTTGGACTGCTGTGA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000044059.5 |
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| 3UTR TCA 72 bp | CTACAAAACACAAGAGAAGTGGAGATAGGGAGGCAATaGACTCATTTCATCTACCTGTTTGAAACGGGAAGG | + |
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Preference number: 3 (lower is better) Translates to: LQNTREVEIGRQ*THFIYLFETGR Trigger: CCTTCCCGTTTCAAACAGGTAGATGAAATGAGTTCATTGCCTCCCTATCTCCACTTCTCTTGTGTTTTGTAG 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000044059.5 |
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| CDS-3UTR GCA 90 bp | GGCTCAACCCCACTTTTATACATGCAAGACAAGTCCTCTACAAACTCGGCTAGATGTTCAGCCCCTGCATaGGGCGCCGCTCGCGCGCGT | + |
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Preference number: 4 (lower is better) Translates to: GSTPLLYMQDKSSTNSARCSAPA*GAARAR Trigger: ACGCGCGCGAGCGGCGCCGCATGCAGGGGCTGAACA...TCTAGCCGAGTTTGTAGAGGACTTGTCTTGCATGTATAAAAGTGGGGTTGAGCC 57% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000044059.5 |
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| CDS-3UTR CCA 90 bp | CACCACAAGGTAGCTGCTCAGAACATAAACAAGTCACATAATACAACTTCGCCCCCCGCCGGAGGGCCGTaGGGTTTGCAGGCCGACTTC | + |
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Preference number: 4 (lower is better) Translates to: HHKVAAQNINKSHNTTSPPAGGP*GLQADF Trigger: GAAGTCGGCCTGCAAACCCCACGGCCCTCCGGCGGG...GGGCGAAGTTGTATTATGTGACTTGTTTATGTTCTGAGCAGCTACCTTGTGGTG 56% GC, longest homopolymer 6 nt, total homopolymer stretches 6 nt. Matches the following 1 transcripts: ENSMUST00000044059.5 |
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| CDS-3UTR GCA 90 bp | AGCATTATTTTCACAGCAGTCCAAAGTCATTCGCGATGTCCACTCATGAAACCTTTGTCCTGGCCCCACTaGGGCACCACCCTGCGCAGC | + |
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Preference number: 4 (lower is better) Translates to: SIIFTAVQSHSRCPLMKPLSWPH*GTTLRS Trigger: GCTGCGCAGGGTGGTGCCGCAGTGGGGCCAGGACAA...AGGTTTCATGAGTGGACATCGCGAATGACTTTGGACTGCTGTGAAAATAATGCT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000044059.5 |
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| CDS-3UTR CCA 90 bp | AAGTCATTCGCGATGTCCACTCATGAAACCTACAAAACACAAGAGAAGTGGAGAGACAGCTTCTTGTCCTaGCCCCACTGCGGCACCACC | + |
|
Preference number: 4 (lower is better) Translates to: KSFAMSTHETYKTQEKWRDSFLS*PHCGTT Trigger: GGTGGTGCCGCAGTGGGGCCAGGACAAGAAGCTGTC...TCTCCACTTCTCTTGTGTTTTGTAGGTTTCATGAGTGGACATCGCGAATGACTT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000044059.5 |
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| CDS-3UTR CCA 90 bp | ACTCTATCTGATGCATGCACACACAATATACGGAGCATAAATGCATTTACACCAGGGAAGGGCTCCGGCTaGAAGCCGAAGAGCCTCTGC | + |
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Preference number: 4 (lower is better) Translates to: TLSDACTHNIRSINAFTPGKGSG*KPKSLC Trigger: GCAGAGGCTCTTCGGCTTCCAGCCGGAGCCCTTCCC...TGGTGTAAATGCATTTATGCTCCGTATATTGTGTGTGCATGCATCAGATAGAGT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000044059.5 |
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| CDS CCA 90 bp | CGAACGCCGTGTTCAGCCCCTGCATGCGGCGCCGCTCGCGCGCGTTaGCCGCCAGACGCCTGCGCGCCGCGCTCTCCAGCCGCCCGGGCC | + |
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Preference number: 5 (lower is better) Translates to: RTPCSAPACGAARAR*PPDACAPRSPAARA Trigger: GGCCCGGGCGGCTGGAGAGCGCGGCGCGCAGGCGTCTGGCGGCCAACGCGCGCGAGCGGCGCCGCATGCAGGGGCTGAACACGGCGTTCG 80% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000044059.5 |
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| CDS-3UTR CAA 90 bp | TTATACATGCAAGACAAGTCCTCTACAAACTCGGCTAGACCCCAGCCCCGTTGTTGCAGTGTCTCGTACTaGGACAGCTTCTTGTCCTGG | + |
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Preference number: 5 (lower is better) Translates to: LYMQDKSSTNSARPQPRCCSVSY*DSFLSW Trigger: CCAGGACAAGAAGCTGTCCAAGTACGAGACACTGCA...ACAACGGGGCTGGGGTCTAGCCGAGTTTGTAGAGGACTTGTCTTGCATGTATAA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000044059.5 |
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| CDS CAA 90 bp | TCGAACGCCGTGTTCAGCCCCTGCATGCGGCGCCGCTCGCGCGCGTaGGCCGCCAGACGCCTGCGCGCCGCGCTCTCCAGCCGCCCGGGC | + |
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Preference number: 6 (lower is better) Translates to: SNAVFSPCMRRRSRA*AARRLRAALSSRPG Trigger: GCCCGGGCGGCTGGAGAGCGCGGCGCGCAGGCGTCTGGCGGCCAACGCGCGCGAGCGGCGCCGCATGCAGGGGCTGAACACGGCGTTCGA 79% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000044059.5 |
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| CDS CCA 72 bp | TGTTCAGCCCCTGCATGCGGCGCCGCTCGCGCGCGTTaGCCGCCAGACGCCTGCGCGCCGCGCTCTCCAGCC | + |
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Preference number: 6 (lower is better) Translates to: CSAPACGAARAR*PPDACAPRSPA Trigger: GGCTGGAGAGCGCGGCGCGCAGGCGTCTGGCGGCCAACGCGCGCGAGCGGCGCCGCATGCAGGGGCTGAACA 78% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000044059.5 |
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| CDS CAA 72 bp | GTGTTCAGCCCCTGCATGCGGCGCCGCTCGCGCGCGTaGGCCGCCAGACGCCTGCGCGCCGCGCTCTCCAGC | + |
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Preference number: 6 (lower is better) Translates to: VFSPCMRRRSRA*AARRLRAALSS Trigger: GCTGGAGAGCGCGGCGCGCAGGCGTCTGGCGGCCAACGCGCGCGAGCGGCGCCGCATGCAGGGGCTGAACAC 78% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000044059.5 |
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| CDS GCA 72 bp | ACAGCTTCTTGTCCTGGCCCCACTGCGGCACCACCCTaGGCAGCCGGTCGAACGCCGTGTTCAGCCCCTGCA | + |
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Preference number: 6 (lower is better) Translates to: TASCPGPTAAPP*AAGRTPCSAPA Trigger: TGCAGGGGCTGAACACGGCGTTCGACCGGCTGCGCAGGGTGGTGCCGCAGTGGGGCCAGGACAAGAAGCTGT 68% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000044059.5 |
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