RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for ATM (Mus musculus)

Ensembl gene IDs: ENSMUSG00000034218

Ensembl transcript IDs: ENSMUST00000118282.9, ENSMUST00000132249.2, ENSMUST00000150244.2, ENSMUST00000232179.2

Found 540 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR-3UTR TCA 90 bp AGCTCACTCTGCTGCCCCCACCATTTGCAGTTCAGTGTGTATGCGGCGGTCTTGCCTACGAATGGATCTTaGGTGACCATTACCTCTAAC +
Preference number: 2 (lower is better)
Translates to: SSLCCPHHLQFSVYAAVLPTNGS*VTITSN
Trigger: GTTAGAGGTAATGGTCACTCAAGATCCATTCGTAGG...CAAGACCGCCGCATACACACTGAACTGCAAATGGTGGGGGCAGCAGAGTGAGCT
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000118282.9
ENSMUST00000232179.2
3UTR-3UTR GCA 90 bp GTTCTCCCACTGAGCCACACTCCAGCCCTACCTACATTCATTCTAATGAGGGATGCTGCCCCCACCATTTaGAGTTCAGTGTGTATGCGG +
Preference number: 2 (lower is better)
Translates to: VLPLSHTPALPTFILMRDAAPTI*SSVCMR
Trigger: CCGCATACACACTGAACTGCAAATGGTGGGGGCAGC...ATCCCTCATTAGAATGAATGTAGGTAGGGCTGGAGTGTGGCTCAGTGGGAGAAC
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000118282.9
3UTR-3UTR GCA 90 bp AGTTACGAACTTGTCTTCATGTACACCAGCAGTAAAGCTCACTCTGCTGCCCCCTGTATGCGGCGGTCTTaGTGCAGTAGCACAAGCATG +
Preference number: 2 (lower is better)
Translates to: SYELVFMYTSSKAHSAAPCMRRS*CSSTSM
Trigger: CATGCTTGTGCTACTGCAGCAAGACCGCCGCATACA...GGGGGCAGCAGAGTGAGCTTTACTGCTGGTGTACATGAAGACAAGTTCGTAACT
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000118282.9
ENSMUST00000232179.2
3UTR-3UTR TCA 90 bp GTTACGAACTTGTCTTCATGTACACCAGCAGTAAAGCTCACTCTGCTGCCCCCAGTGAGATGTCATTTCTaGAGTTCGAGTTTAAGGGTG +
Preference number: 2 (lower is better)
Translates to: VTNLSSCTPAVKLTLLPPVRCHF*SSSLRV
Trigger: CACCCTTAAACTCGAACTTCAGAAATGACATCTCAC...TGGGGGCAGCAGAGTGAGCTTTACTGCTGGTGTACATGAAGACAAGTTCGTAAC
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000118282.9
ENSMUST00000232179.2
3UTR-3UTR TCA 90 bp CTTGTCTTCATGTACACCAGCAGTAAAGCTCACTCTGCTGCCCCCACCATTTGCTCCAAATATGGTGGGTaGGATGTCATTTCTGAAGTT +
Preference number: 2 (lower is better)
Translates to: LVFMYTSSKAHSAAPTICSKYGG*DVISEV
Trigger: AACTTCAGAAATGACATCTCACCCACCATATTTGGA...GCAAATGGTGGGGGCAGCAGAGTGAGCTTTACTGCTGGTGTACATGAAGACAAG
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000118282.9
ENSMUST00000232179.2
3UTR CAA 90 bp AAACATGCTTTAATTAAAGGTTGTTTTAGAGCAGAAGTTACGAACTaGTCTTCATGTACACCAGCAGTAAAGCTCACTCTGCTGCCCCCA +
Preference number: 2 (lower is better)
Translates to: KHALIKGCFRAEVTN*SSCTPAVKLTLLPP
Trigger: TGGGGGCAGCAGAGTGAGCTTTACTGCTGGTGTACATGAAGACAAGTTCGTAACTTCTGCTCTAAAACAACCTTTAATTAAAGCATGTTT
41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000118282.9
ENSMUST00000232179.2
3UTR-3UTR TCA 90 bp CACACACACACACAGTCTGGAAAACATGCTTTAATTAAAGGTTGTTTTAGAGCACCTACGAATGGATCTTaGGTGACCATTACCTCTAAC +
Preference number: 2 (lower is better)
Translates to: HTHTQSGKHALIKGCFRAPTNGS*VTITSN
Trigger: GTTAGAGGTAATGGTCACTCAAGATCCATTCGTAGG...TGCTCTAAAACAACCTTTAATTAAAGCATGTTTTCCAGACTGTGTGTGTGTGTG
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000118282.9
ENSMUST00000232179.2
3UTR GCA 72 bp ACCAGCAGTAAAGCTCACTCTGCTGCCCCCACCATTTaGAGTTCAGTGTGTATGCGGCGGTCTTGCTGCAGT +
Preference number: 3 (lower is better)
Translates to: TSSKAHSAAPTI*SSVCMRRSCCS
Trigger: ACTGCAGCAAGACCGCCGCATACACACTGAACTGCAAATGGTGGGGGCAGCAGAGTGAGCTTTACTGCTGGT
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000118282.9
ENSMUST00000232179.2
CDS-3UTR TCA 90 bp GCTCACTCTGCTGCCCCCACCATTTGCAGTTCAGTGTGTATGCGGCGGTCTTGCCACATAACAGTCCTCTaGTCCCCGCCTCTGCTGTCG +
Preference number: 4 (lower is better)
Translates to: AHSAAPTICSSVCMRRSCHITVL*SPPLLS
Trigger: CGACAGCAGAGGCGGGGATCAGAGGACTGTTATGTG...GCAAGACCGCCGCATACACACTGAACTGCAAATGGTGGGGGCAGCAGAGTGAGC
59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000118282.9
ENSMUST00000232179.2
CDS-3UTR GCA 90 bp GCTCACTCTGCTGCCCCCACCATTTGCAGTTCAGTGTGTATGCGGCGGTCTTGCGAGAGCCCCAAATTCTaGAGGGCCTGGATGATTCCT +
Preference number: 4 (lower is better)
Translates to: AHSAAPTICSSVCMRRSCESPKF*RAWMIP
Trigger: AGGAATCATCCAGGCCCTGCAGAATTTGGGGCTCTC...GCAAGACCGCCGCATACACACTGAACTGCAAATGGTGGGGGCAGCAGAGTGAGC
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000118282.9
ENSMUST00000232179.2
CDS-3UTR TCA 90 bp TCATGTACACCAGCAGTAAAGCTCACTCTGCTGCCCCCACCATTTGCAGTTCAGCCTGTCCACCCACACTaGGCACAGTGCCTTCCTCCA +
Preference number: 4 (lower is better)
Translates to: SCTPAVKLTLLPPPFAVQPVHPH*AQCLPP
Trigger: TGGAGGAAGGCACTGTGCTCAGTGTGGGTGGACAGG...CTGAACTGCAAATGGTGGGGGCAGCAGAGTGAGCTTTACTGCTGGTGTACATGA
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000118282.9
ENSMUST00000232179.2
CDS-3UTR GCA 90 bp AGCTCACTCTGCTGCCCCCACCATTTGCAGTTCAGTGTGTATGCGGCGGTCTTGGAGAGCCCCAAATTCTaGAGGGCCTGGATGATTCCT +
Preference number: 4 (lower is better)
Translates to: SSLCCPHHLQFSVYAAVLESPKF*RAWMIP
Trigger: AGGAATCATCCAGGCCCTGCAGAATTTGGGGCTCTC...CAAGACCGCCGCATACACACTGAACTGCAAATGGTGGGGGCAGCAGAGTGAGCT
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000118282.9
ENSMUST00000232179.2
CDS-3UTR TCA 90 bp AGCTCACTCTGCTGCCCCCACCATTTGCAGTTCAGTGTGTATGCGGCGGTCTTGATCTTCCATTGGCAATaGGTGCTCGTTTCCAGGGAG +
Preference number: 4 (lower is better)
Translates to: SSLCCPHHLQFSVYAAVLIFHWQ*VLVSRE
Trigger: CTCCCTGGAAACGAGCACTCATTGCCAATGGAAGAT...CAAGACCGCCGCATACACACTGAACTGCAAATGGTGGGGGCAGCAGAGTGAGCT
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000118282.9
ENSMUST00000232179.2
CDS-3UTR TCA 90 bp GCTCACTCTGCTGCCCCCACCATTTGCAGTTCAGTGTGTATGCGGCGGTCTTGCGTGCCAACGATAACGTaGAGATGGCTTTCTAGAGCA +
Preference number: 4 (lower is better)
Translates to: AHSAAPTICSSVCMRRSCVPTIT*RWLSRA
Trigger: TGCTCTAGAAAGCCATCTTCACGTTATCGTTGGCAC...GCAAGACCGCCGCATACACACTGAACTGCAAATGGTGGGGGCAGCAGAGTGAGC
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000118282.9
ENSMUST00000232179.2
CDS-3UTR GCA 90 bp GCTCACTCTGCTGCCCCCACCATTTGCAGTTCAGTGTGTATGCGGCGGTCTTGCAGCACTAAGTACATATaGAGGTGGAGGGGCTTCATG +
Preference number: 4 (lower is better)
Translates to: AHSAAPTICSSVCMRRSCSTKYI*RWRGFM
Trigger: CATGAAGCCCCTCCACCTGCATATGTACTTAGTGCT...GCAAGACCGCCGCATACACACTGAACTGCAAATGGTGGGGGCAGCAGAGTGAGC
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000118282.9
ENSMUST00000232179.2
CDS-3UTR CCA 90 bp GCTCACTCTGCTGCCCCCACCATTTGCAGTTCAGTGTGTATGCGGCGGTCTTGCCAGCTAAAGGACTCATaGCACCAACAGCATTCTGGT +
Preference number: 4 (lower is better)
Translates to: AHSAAPTICSSVCMRRSCQLKDS*HQQHSG
Trigger: ACCAGAATGCTGTTGGTGCCATGAGTCCTTTAGCTG...GCAAGACCGCCGCATACACACTGAACTGCAAATGGTGGGGGCAGCAGAGTGAGC
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000118282.9
ENSMUST00000232179.2
CDS-3UTR CCA 90 bp AGCTCACTCTGCTGCCCCCACCATTTGCAGTTCAGTGTGTATGCGGCGGTCTTGCTGTCTTTCAGAAGCTaGGAGTGCTTCTGCCACTTC +
Preference number: 4 (lower is better)
Translates to: SSLCCPHHLQFSVYAAVLLSFRS*ECFCHF
Trigger: GAAGTGGCAGAAGCACTCCCAGCTTCTGAAAGACAG...CAAGACCGCCGCATACACACTGAACTGCAAATGGTGGGGGCAGCAGAGTGAGCT
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000118282.9
ENSMUST00000232179.2
CDS-3UTR TCA 90 bp GCTCACTCTGCTGCCCCCACCATTTGCAGTTCAGTGTGTATGCGGCGGTCTTGCTCTAGCCACTGTTGCTaGGATACTTCACACCAGTAT +
Preference number: 4 (lower is better)
Translates to: AHSAAPTICSSVCMRRSCSSHCC*DTSHQY
Trigger: ATACTGGTGTGAAGTATCTCAGCAACAGTGGCTAGA...GCAAGACCGCCGCATACACACTGAACTGCAAATGGTGGGGGCAGCAGAGTGAGC
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000118282.9
ENSMUST00000232179.2
CDS-3UTR TCA 90 bp GCTCACTCTGCTGCCCCCACCATTTGCAGTTCAGTGTGTATGCGGCGGTCTTGCAGCAGATCAGGGTTCTaGGAATCACATAACAGTCCT +
Preference number: 4 (lower is better)
Translates to: AHSAAPTICSSVCMRRSCSRSGF*ESHNSP
Trigger: AGGACTGTTATGTGATTCTCAGAACCCTGATCTGCT...GCAAGACCGCCGCATACACACTGAACTGCAAATGGTGGGGGCAGCAGAGTGAGC
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000118282.9
ENSMUST00000232179.2
CDS-3UTR TCA 90 bp AGCTCACTCTGCTGCCCCCACCATTTGCAGTTCAGTGTGTATGCGGCGGTCTTGCTACCAGGGTATTGTTaGGGGCAGTCAGCATTATCA +
Preference number: 4 (lower is better)
Translates to: SSLCCPHHLQFSVYAAVLLPGYC*GQSALS
Trigger: TGATAATGCTGACTGCCCTCAACAATACCCTGGTAG...CAAGACCGCCGCATACACACTGAACTGCAAATGGTGGGGGCAGCAGAGTGAGCT
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000118282.9
ENSMUST00000232179.2
CDS-3UTR TCA 90 bp AGCTCACTCTGCTGCCCCCACCATTTGCAGTTCAGTGTGTATGCGGCGGTCTTGGGCACTGATTGGCACTaGAATCATTTGGCCTGTATC +
Preference number: 4 (lower is better)
Translates to: SSLCCPHHLQFSVYAAVLGTDWH*NHLACI
Trigger: GATACAGGCCAAATGATTTCAGTGCCAATCAGTGCC...CAAGACCGCCGCATACACACTGAACTGCAAATGGTGGGGGCAGCAGAGTGAGCT
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000118282.9
ENSMUST00000232179.2
CDS-3UTR GCA 90 bp GCTCACTCTGCTGCCCCCACCATTTGCAGTTCAGTGTGTATGCGGCGGTCTTGCGCCATCTTGGATAACTaGAACAAGCTGACAACTAGC +
Preference number: 4 (lower is better)
Translates to: AHSAAPTICSSVCMRRSCAILDN*NKLTTS
Trigger: GCTAGTTGTCAGCTTGTTGCAGTTATCCAAGATGGC...GCAAGACCGCCGCATACACACTGAACTGCAAATGGTGGGGGCAGCAGAGTGAGC
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000118282.9
ENSMUST00000232179.2
CDS-3UTR GCA 90 bp GTTACGAACTTGTCTTCATGTACACCAGCAGTAAAGCTCACTCTGCTGCCCCCAGGGTGGAGGAGGAGATaGTGGTCTCCAGGTCGTAAG +
Preference number: 4 (lower is better)
Translates to: VTNLSSCTPAVKLTLLPPGWRRR*WSPGRK
Trigger: CTTACGACCTGGAGACCAGCATCTCCTCCTCCACCC...TGGGGGCAGCAGAGTGAGCTTTACTGCTGGTGTACATGAAGACAAGTTCGTAAC
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000118282.9
ENSMUST00000232179.2
CDS-3UTR CCA 90 bp GCTCACTCTGCTGCCCCCACCATTTGCAGTTCAGTGTGTATGCGGCGGTCTTGCGTTTTACAGACATCTTaGTCACGTCGGTGCAGAGAA +
Preference number: 4 (lower is better)
Translates to: AHSAAPTICSSVCMRRSCVLQTS*SRRCRE
Trigger: TTCTCTGCACCGACGTGACCAAGATGTCTGTAAAAC...GCAAGACCGCCGCATACACACTGAACTGCAAATGGTGGGGGCAGCAGAGTGAGC
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000118282.9
ENSMUST00000232179.2
CDS-3UTR TCA 90 bp AGCTCACTCTGCTGCCCCCACCATTTGCAGTTCAGTGTGTATGCGGCGGTCTTGTCTAGCCACTGTTGCTaGGATACTTCACACCAGTAT +
Preference number: 4 (lower is better)
Translates to: SSLCCPHHLQFSVYAAVLSSHCC*DTSHQY
Trigger: ATACTGGTGTGAAGTATCTCAGCAACAGTGGCTAGA...CAAGACCGCCGCATACACACTGAACTGCAAATGGTGGGGGCAGCAGAGTGAGCT
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000118282.9
ENSMUST00000232179.2
CDS-3UTR TCA 90 bp GCTCACTCTGCTGCCCCCACCATTTGCAGTTCAGTGTGTATGCGGCGGTCTTGCAATATTACGAGATCCTaGGGAATATTTCCCTCGGCT +
Preference number: 4 (lower is better)
Translates to: AHSAAPTICSSVCMRRSCNITRS*GIFPSA
Trigger: AGCCGAGGGAAATATTCCTCAGGATCTCGTAATATT...GCAAGACCGCCGCATACACACTGAACTGCAAATGGTGGGGGCAGCAGAGTGAGC
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000118282.9
ENSMUST00000232179.2
CDS-3UTR TCA 90 bp AGCTCACTCTGCTGCCCCCACCATTTGCAGTTCAGTGTGTATGCGGCGGTCTTGATCGGCCTAAGAACCTaGGCATGTCTAAGAGAAGAT +
Preference number: 4 (lower is better)
Translates to: SSLCCPHHLQFSVYAAVLIGLRT*ACLRED
Trigger: ATCTTCTCTTAGACATGCTCAGGTTCTTAGGCCGAT...CAAGACCGCCGCATACACACTGAACTGCAAATGGTGGGGGCAGCAGAGTGAGCT
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000118282.9
ENSMUST00000232179.2
CDS-3UTR TCA 90 bp TGTTCTCCCACTGAGCCACACTCCAGCCCTACCTACATTCATTCTAATGAGGGAGGAAGACCTGCTGCATaGCAGCATCTTGCCTCAGGT +
Preference number: 4 (lower is better)
Translates to: CSPTEPHSSPTYIHSNEGGRPAA*QHLASG
Trigger: ACCTGAGGCAAGATGCTGTCATGCAGCAGGTCTTCC...TCCCTCATTAGAATGAATGTAGGTAGGGCTGGAGTGTGGCTCAGTGGGAGAACA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000118282.9
CDS-3UTR TCA 90 bp ACACCAGCAGTAAAGCTCACTCTGCTGCCCCCACCATTTGCAGTTCAGTGTGTATTTCACAGCACCTTCTaGAGACACCTTCCACACCGG +
Preference number: 4 (lower is better)
Translates to: TPAVKLTLLPPPFAVQCVFHSTF*RHLPHR
Trigger: CCGGTGTGGAAGGTGTCTTCAGAAGGTGCTGTGAAA...TACACACTGAACTGCAAATGGTGGGGGCAGCAGAGTGAGCTTTACTGCTGGTGT
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000118282.9
ENSMUST00000232179.2
CDS-3UTR GCA 90 bp TCATGTACACCAGCAGTAAAGCTCACTCTGCTGCCCCCACCATTTGCAGTTCAGTACACAGGAAGCGCTTaGGATCCTCTCTCAGTGCAC +
Preference number: 4 (lower is better)
Translates to: SCTPAVKLTLLPPPFAVQYTGSA*DPLSVH
Trigger: GTGCACTGAGAGAGGATCGCAAGCGCTTCCTGTGTA...CTGAACTGCAAATGGTGGGGGCAGCAGAGTGAGCTTTACTGCTGGTGTACATGA
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000118282.9
ENSMUST00000232179.2
CDS-3UTR GCA 90 bp GTTCTCCCACTGAGCCACACTCCAGCCCTACCTACATTCATTCTAATGAGGGATTGCATGACAGCATCTTaGCTCAGGTCATCACGGCCC +
Preference number: 4 (lower is better)
Translates to: VLPLSHTPALPTFILMRDCMTAS*LRSSRP
Trigger: GGGCCGTGATGACCTGAGGCAAGATGCTGTCATGCA...ATCCCTCATTAGAATGAATGTAGGTAGGGCTGGAGTGTGGCTCAGTGGGAGAAC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000118282.9
CDS-3UTR GCA 90 bp GTTACGAACTTGTCTTCATGTACACCAGCAGTAAAGCTCACTCTGCTGCCCCCATGCATGACAGCATCTTaGCTCAGGTCATCACGGCCC +
Preference number: 4 (lower is better)
Translates to: VTNLSSCTPAVKLTLLPPCMTAS*LRSSRP
Trigger: GGGCCGTGATGACCTGAGGCAAGATGCTGTCATGCA...TGGGGGCAGCAGAGTGAGCTTTACTGCTGGTGTACATGAAGACAAGTTCGTAAC
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000118282.9
ENSMUST00000232179.2
CDS-3UTR GCA 90 bp GCTCACTCTGCTGCCCCCACCATTTGCAGTTCAGTGTGTATGCGGCGGTCTTGCACAAGCTCTGCCGACTaGTCGTTTATCAAGATATTC +
Preference number: 4 (lower is better)
Translates to: AHSAAPTICSSVCMRRSCTSSAD*SFIKIF
Trigger: GAATATCTTGATAAACGAGCAGTCGGCAGAGCTTGT...GCAAGACCGCCGCATACACACTGAACTGCAAATGGTGGGGGCAGCAGAGTGAGC
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000118282.9
ENSMUST00000232179.2
CDS-3UTR CCA 90 bp AGCTCACTCTGCTGCCCCCACCATTTGCAGTTCAGTGTGTATGCGGCGGTCTTGTCTCTTTCACCAGTCTaGTTCACTGCCATCTTGGAT +
Preference number: 4 (lower is better)
Translates to: SSLCCPHHLQFSVYAAVLSLSPV*FTAILD
Trigger: ATCCAAGATGGCAGTGAACCAGACTGGTGAAAGAGA...CAAGACCGCCGCATACACACTGAACTGCAAATGGTGGGGGCAGCAGAGTGAGCT
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000118282.9
ENSMUST00000232179.2
CDS-3UTR CCA 90 bp AGCTCACTCTGCTGCCCCCACCATTTGCAGTTCAGTGTGTATGCGGCGGTCTTGAAAGAACCTCTACAATaGTCAGCAGGGTTTCCTGAG +
Preference number: 4 (lower is better)
Translates to: SSLCCPHHLQFSVYAAVLKEPLQ*SAGFPE
Trigger: CTCAGGAAACCCTGCTGACCATTGTAGAGGTTCTTT...CAAGACCGCCGCATACACACTGAACTGCAAATGGTGGGGGCAGCAGAGTGAGCT
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000118282.9
ENSMUST00000232179.2
CDS-3UTR TCA 90 bp AGCTCACTCTGCTGCCCCCACCATTTGCAGTTCAGTGTGTATGCGGCGGTCTTGGATCCAATGATTCCTTaGGATTTTGCTGGACAGAGA +
Preference number: 4 (lower is better)
Translates to: SSLCCPHHLQFSVYAAVLDPMIP*DFAGQR
Trigger: TCTCTGTCCAGCAAAATCTCAAGGAATCATTGGATC...CAAGACCGCCGCATACACACTGAACTGCAAATGGTGGGGGCAGCAGAGTGAGCT
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000118282.9
ENSMUST00000232179.2
CDS-3UTR TCA 90 bp TACAGGTTAGGCACATGTTCTCCCACTGAGCCACACTCCAGCCCTACCTACATTACCCACCAAAAGACTTaGACACCGGACAAGGGTTTC +
Preference number: 4 (lower is better)
Translates to: YRLGTCSPTEPHSSPTYITHQKT*TPDKGF
Trigger: GAAACCCTTGTCCGGTGTTCAAGTCTTTTGGTGGGT...AATGTAGGTAGGGCTGGAGTGTGGCTCAGTGGGAGAACATGTGCCTAACCTGTA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000118282.9
CDS-3UTR TCA 90 bp ACACCAGCAGTAAAGCTCACTCTGCTGCCCCCACCATTTGCAGTTCAGTGTGTAACCCACCAAAAGACTTaGACACCGGACAAGGGTTTC +
Preference number: 4 (lower is better)
Translates to: TPAVKLTLLPPPFAVQCVTHQKT*TPDKGF
Trigger: GAAACCCTTGTCCGGTGTTCAAGTCTTTTGGTGGGT...TACACACTGAACTGCAAATGGTGGGGGCAGCAGAGTGAGCTTTACTGCTGGTGT
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000118282.9
ENSMUST00000232179.2
CDS-3UTR TCA 90 bp AGCTCACTCTGCTGCCCCCACCATTTGCAGTTCAGTGTGTATGCGGCGGTCTTGTTAAAAGATGTCTGCTaGAACTTCAGAGGGAGTGCT +
Preference number: 4 (lower is better)
Translates to: SSLCCPHHLQFSVYAAVLLKDVC*NFRGSA
Trigger: AGCACTCCCTCTGAAGTTTCAGCAGACATCTTTTAA...CAAGACCGCCGCATACACACTGAACTGCAAATGGTGGGGGCAGCAGAGTGAGCT
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000118282.9
ENSMUST00000232179.2
CDS-3UTR TCA 90 bp CTTGTCTTCATGTACACCAGCAGTAAAGCTCACTCTGCTGCCCCCACCATTTGCTGCCTGAATGACATGTaGGGGGAAATATGGCGGGTT +
Preference number: 4 (lower is better)
Translates to: LVFMYTSSKAHSAAPTICCLNDM*GEIWRV
Trigger: AACCCGCCATATTTCCCCTCACATGTCATTCAGGCA...GCAAATGGTGGGGGCAGCAGAGTGAGCTTTACTGCTGGTGTACATGAAGACAAG
51% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000118282.9
ENSMUST00000232179.2
CDS-3UTR TCA 90 bp GCTCACTCTGCTGCCCCCACCATTTGCAGTTCAGTGTGTATGCGGCGGTCTTGCTGTGCTTTTCTTATCTaGATAGATCTCTGCGTAGAG +
Preference number: 4 (lower is better)
Translates to: AHSAAPTICSSVCMRRSCCAFLI*IDLCVE
Trigger: CTCTACGCAGAGATCTATTCAGATAAGAAAAGCACA...GCAAGACCGCCGCATACACACTGAACTGCAAATGGTGGGGGCAGCAGAGTGAGC
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000118282.9
ENSMUST00000232179.2
CDS-3UTR TCA 90 bp TCATGTACACCAGCAGTAAAGCTCACTCTGCTGCCCCCACCATTTGCAGTTCAGAGCGCTCTCTGTCTGTaGCTGACCTTGAGAAAAGCT +
Preference number: 4 (lower is better)
Translates to: SCTPAVKLTLLPPPFAVQSALCL*LTLRKA
Trigger: AGCTTTTCTCAAGGTCAGTCACAGACAGAGAGCGCT...CTGAACTGCAAATGGTGGGGGCAGCAGAGTGAGCTTTACTGCTGGTGTACATGA
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000118282.9
ENSMUST00000232179.2
CDS-3UTR TCA 90 bp TCATGTACACCAGCAGTAAAGCTCACTCTGCTGCCCCCACCATTTGCAGTTCAGGAGGCTCCTGAAAGCTaGAGTCGCTGTCTTTCAGAA +
Preference number: 4 (lower is better)
Translates to: SCTPAVKLTLLPPPFAVQEAPES*SRCLSE
Trigger: TTCTGAAAGACAGCGACTTCAGCTTTCAGGAGCCTC...CTGAACTGCAAATGGTGGGGGCAGCAGAGTGAGCTTTACTGCTGGTGTACATGA
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000118282.9
ENSMUST00000232179.2
CDS-3UTR TCA 90 bp CTGAGCCACACTCCAGCCCTACCTACATTCATTCTAATGAGGGATTCCCATGATGCCATGAGAGGCTCCTaGAAGCTGAAGTCGCTGTCT +
Preference number: 4 (lower is better)
Translates to: LSHTPALPTFILMRDSHDAMRGS*KLKSLS
Trigger: AGACAGCGACTTCAGCTTTCAGGAGCCTCTCATGGC...ATCATGGGAATCCCTCATTAGAATGAATGTAGGTAGGGCTGGAGTGTGGCTCAG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000118282.9
CDS-3UTR TCA 90 bp GCTCACTCTGCTGCCCCCACCATTTGCAGTTCAGTGTGTATGCGGCGGTCTTGCCGATCCTCATCAAGGTaGGAGTTTTCTTTAGATGTA +
Preference number: 4 (lower is better)
Translates to: AHSAAPTICSSVCMRRSCRSSSR*EFSLDV
Trigger: TACATCTAAAGAAAACTCTCACCTTGATGAGGATCG...GCAAGACCGCCGCATACACACTGAACTGCAAATGGTGGGGGCAGCAGAGTGAGC
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000118282.9
ENSMUST00000232179.2
CDS-3UTR TCA 90 bp ACACCAGCAGTAAAGCTCACTCTGCTGCCCCCACCATTTGCAGTTCAGTGTGTAGGTTGGCTGGAATATTaGTGCCTTTTCTCTGAGCCC +
Preference number: 4 (lower is better)
Translates to: TPAVKLTLLPPPFAVQCVGWLEY*CLFSEP
Trigger: GGGCTCAGAGAAAAGGCATCAATATTCCAGCCAACC...TACACACTGAACTGCAAATGGTGGGGGCAGCAGAGTGAGCTTTACTGCTGGTGT
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000118282.9
ENSMUST00000232179.2
CDS-3UTR GCA 90 bp AGCTCACTCTGCTGCCCCCACCATTTGCAGTTCAGTGTGTATGCGGCGGTCTTGGAATTTCACTGTTTATaGCTCCACTGTCCAGAAAGG +
Preference number: 4 (lower is better)
Translates to: SSLCCPHHLQFSVYAAVLEFHCL*LHCPER
Trigger: CCTTTCTGGACAGTGGAGGCATAAACAGTGAAATTC...CAAGACCGCCGCATACACACTGAACTGCAAATGGTGGGGGCAGCAGAGTGAGCT
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000118282.9
ENSMUST00000232179.2
CDS-3UTR GCA 90 bp GCTCACTCTGCTGCCCCCACCATTTGCAGTTCAGTGTGTATGCGGCGGTCTTGCGGACTTCTTTTCTCTTaGTCGTCTGTGCTTTTCTTA +
Preference number: 4 (lower is better)
Translates to: AHSAAPTICSSVCMRRSCGLLFS*SSVLFL
Trigger: TAAGAAAAGCACAGACGAGCAAGAGAAAAGAAGTCC...GCAAGACCGCCGCATACACACTGAACTGCAAATGGTGGGGGCAGCAGAGTGAGC
51% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000118282.9
ENSMUST00000232179.2
CDS-3UTR GCA 90 bp AGCTCACTCTGCTGCCCCCACCATTTGCAGTTCAGTGTGTATGCGGCGGTCTTGAGTTCTCCAATTGCCTaGAATCTACTAAGTGTGGGA +
Preference number: 4 (lower is better)
Translates to: SSLCCPHHLQFSVYAAVLSSPIA*NLLSVG
Trigger: TCCCACACTTAGTAGATTGCAGGCAATTGGAGAACT...CAAGACCGCCGCATACACACTGAACTGCAAATGGTGGGGGCAGCAGAGTGAGCT
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000118282.9
ENSMUST00000232179.2
CDS-3UTR GCA 90 bp TCATGTACACCAGCAGTAAAGCTCACTCTGCTGCCCCCACCATTTGCAGTTCAGAGCTGGGAGTGCTTCTaGCACTTCCAGTATGCTTCA +
Preference number: 4 (lower is better)
Translates to: SCTPAVKLTLLPPPFAVQSWECF*HFQYAS
Trigger: TGAAGCATACTGGAAGTGGCAGAAGCACTCCCAGCT...CTGAACTGCAAATGGTGGGGGCAGCAGAGTGAGCTTTACTGCTGGTGTACATGA
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000118282.9
ENSMUST00000232179.2
CDS-3UTR GCA 90 bp TACAGGTTAGGCACATGTTCTCCCACTGAGCCACACTCCAGCCCTACCTACATTCACATCTGGAAGACCTaGTGCATGACAGCATCTTGC +
Preference number: 4 (lower is better)
Translates to: YRLGTCSPTEPHSSPTYIHIWKT*CMTASC
Trigger: GCAAGATGCTGTCATGCAGCAGGTCTTCCAGATGTG...AATGTAGGTAGGGCTGGAGTGTGGCTCAGTGGGAGAACATGTGCCTAACCTGTA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000118282.9
CDS-3UTR CCA 90 bp TACAGGTTAGGCACATGTTCTCCCACTGAGCCACACTCCAGCCCTACCTACATTCTTCTTCAGGAGCTCTaGCTCCTTGTGGATGATGGA +
Preference number: 4 (lower is better)
Translates to: YRLGTCSPTEPHSSPTYILLQEL*LLVDDG
Trigger: TCCATCATCCACAAGGAGCCAGAGCTCCTGAAGAAG...AATGTAGGTAGGGCTGGAGTGTGGCTCAGTGGGAGAACATGTGCCTAACCTGTA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000118282.9
CDS-3UTR CCA 90 bp ACACCAGCAGTAAAGCTCACTCTGCTGCCCCCACCATTTGCAGTTCAGTGTGTAGCTGGACAGCTATGGTaGAGAAATCCAGAGGACCTA +
Preference number: 4 (lower is better)
Translates to: TPAVKLTLLPPPFAVQCVAGQLW*RNPEDL
Trigger: TAGGTCCTCTGGATTTCTCCACCATAGCTGTCCAGC...TACACACTGAACTGCAAATGGTGGGGGCAGCAGAGTGAGCTTTACTGCTGGTGT
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000118282.9
ENSMUST00000232179.2
CDS-3UTR CCA 90 bp GTTCTCCCACTGAGCCACACTCCAGCCCTACCTACATTCATTCTAATGAGGGATAAATTCTGCAGGGCCTaGATGATTCCTGACTGGCGG +
Preference number: 4 (lower is better)
Translates to: VLPLSHTPALPTFILMRDKFCRA*MIPDWR
Trigger: CCGCCAGTCAGGAATCATCCAGGCCCTGCAGAATTT...ATCCCTCATTAGAATGAATGTAGGTAGGGCTGGAGTGTGGCTCAGTGGGAGAAC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000118282.9
CDS-3UTR CCA 90 bp GTTACGAACTTGTCTTCATGTACACCAGCAGTAAAGCTCACTCTGCTGCCCCCAAAATTCTGCAGGGCCTaGATGATTCCTGACTGGCGG +
Preference number: 4 (lower is better)
Translates to: VTNLSSCTPAVKLTLLPPKFCRA*MIPDWR
Trigger: CCGCCAGTCAGGAATCATCCAGGCCCTGCAGAATTT...TGGGGGCAGCAGAGTGAGCTTTACTGCTGGTGTACATGAAGACAAGTTCGTAAC
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000118282.9
ENSMUST00000232179.2
CDS-3UTR CCA 90 bp TCATGTACACCAGCAGTAAAGCTCACTCTGCTGCCCCCACCATTTGCAGTTCAGCTGTCTTTCAGAAGCTaGGAGTGCTTCTGCCACTTC +
Preference number: 4 (lower is better)
Translates to: SCTPAVKLTLLPPPFAVQLSFRS*ECFCHF
Trigger: GAAGTGGCAGAAGCACTCCCAGCTTCTGAAAGACAG...CTGAACTGCAAATGGTGGGGGCAGCAGAGTGAGCTTTACTGCTGGTGTACATGA
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000118282.9
ENSMUST00000232179.2
CDS-3UTR CCA 90 bp TGTTCTCCCACTGAGCCACACTCCAGCCCTACCTACATTCATTCTAATGAGGGAGCATTGGGGGTGGAATaGAGGTCGGACTCATCTTCT +
Preference number: 4 (lower is better)
Translates to: CSPTEPHSSPTYIHSNEGALGVE*RSDSSS
Trigger: AGAAGATGAGTCCGACCTCCATTCCACCCCCAATGC...TCCCTCATTAGAATGAATGTAGGTAGGGCTGGAGTGTGGCTCAGTGGGAGAACA
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000118282.9
CDS-3UTR CCA 90 bp GTTACGAACTTGTCTTCATGTACACCAGCAGTAAAGCTCACTCTGCTGCCCCCAGCATTGGGGGTGGAATaGAGGTCGGACTCATCTTCT +
Preference number: 4 (lower is better)
Translates to: VTNLSSCTPAVKLTLLPPALGVE*RSDSSS
Trigger: AGAAGATGAGTCCGACCTCCATTCCACCCCCAATGC...TGGGGGCAGCAGAGTGAGCTTTACTGCTGGTGTACATGAAGACAAGTTCGTAAC
51% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000118282.9
ENSMUST00000232179.2
CDS-3UTR TCA 90 bp AGCTCACTCTGCTGCCCCCACCATTTGCAGTTCAGTGTGTATGCGGCGGTCTTGCATTCTGGCACACTTTaGAAAAACTTCATTGCAGCT +
Preference number: 4 (lower is better)
Translates to: SSLCCPHHLQFSVYAAVLHSGTL*KNFIAA
Trigger: AGCTGCAATGAAGTTTTTTCAAAGTGTGCCAGAATG...CAAGACCGCCGCATACACACTGAACTGCAAATGGTGGGGGCAGCAGAGTGAGCT
50% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000118282.9
ENSMUST00000232179.2
CDS-3UTR TCA 90 bp GTTCTCCCACTGAGCCACACTCCAGCCCTACCTACATTCATTCTAATGAGGGATATCTTCCATTGGCAATaGGTGCTCGTTTCCAGGGAG +
Preference number: 4 (lower is better)
Translates to: VLPLSHTPALPTFILMRDIFHWQ*VLVSRE
Trigger: CTCCCTGGAAACGAGCACTCATTGCCAATGGAAGAT...ATCCCTCATTAGAATGAATGTAGGTAGGGCTGGAGTGTGGCTCAGTGGGAGAAC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000118282.9
CDS-3UTR TCA 90 bp TACAGGTTAGGCACATGTTCTCCCACTGAGCCACACTCCAGCCCTACCTACATTCCTGAAATAATCTGTTaGCTGACCCTGCAGCCAACA +
Preference number: 4 (lower is better)
Translates to: YRLGTCSPTEPHSSPTYIPEIIC*LTLQPT
Trigger: TGTTGGCTGCAGGGTCAGTCAACAGATTATTTCAGG...AATGTAGGTAGGGCTGGAGTGTGGCTCAGTGGGAGAACATGTGCCTAACCTGTA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000118282.9
CDS-3UTR TCA 90 bp TGTTCTCCCACTGAGCCACACTCCAGCCCTACCTACATTCATTCTAATGAGGGACAGCAGATCGAATTTTaGCACTGTCCTCTACCAGGG +
Preference number: 4 (lower is better)
Translates to: CSPTEPHSSPTYIHSNEGQQIEF*HCPLPG
Trigger: CCCTGGTAGAGGACAGTGTCAAAATTCGATCTGCTG...TCCCTCATTAGAATGAATGTAGGTAGGGCTGGAGTGTGGCTCAGTGGGAGAACA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000118282.9
CDS-3UTR TCA 90 bp AGTTACGAACTTGTCTTCATGTACACCAGCAGTAAAGCTCACTCTGCTGCCCCCCAGCAGATCGAATTTTaGCACTGTCCTCTACCAGGG +
Preference number: 4 (lower is better)
Translates to: SYELVFMYTSSKAHSAAPQQIEF*HCPLPG
Trigger: CCCTGGTAGAGGACAGTGTCAAAATTCGATCTGCTG...GGGGGCAGCAGAGTGAGCTTTACTGCTGGTGTACATGAAGACAAGTTCGTAACT
50% GC, longest homopolymer 6 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000118282.9
ENSMUST00000232179.2
CDS-3UTR TCA 90 bp TGTTCTCCCACTGAGCCACACTCCAGCCCTACCTACATTCATTCTAATGAGGGAGAGGCTCCTGAAAGCTaGAGTCGCTGTCTTTCAGAA +
Preference number: 4 (lower is better)
Translates to: CSPTEPHSSPTYIHSNEGEAPES*SRCLSE
Trigger: TTCTGAAAGACAGCGACTTCAGCTTTCAGGAGCCTC...TCCCTCATTAGAATGAATGTAGGTAGGGCTGGAGTGTGGCTCAGTGGGAGAACA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000118282.9
CDS-3UTR TCA 90 bp GCAGAAGTTACGAACTTGTCTTCATGTACACCAGCAGTAAAGCTCACTCTGCTGGGAAGACCTGCTGCATaGCAGCATCTTGCCTCAGGT +
Preference number: 4 (lower is better)
Translates to: AEVTNLSSCTPAVKLTLLGRPAA*QHLASG
Trigger: ACCTGAGGCAAGATGCTGTCATGCAGCAGGTCTTCC...CAGCAGAGTGAGCTTTACTGCTGGTGTACATGAAGACAAGTTCGTAACTTCTGC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000118282.9
ENSMUST00000232179.2
CDS-3UTR GCA 90 bp ACACCAGCAGTAAAGCTCACTCTGCTGCCCCCACCATTTGCAGTTCAGTGTGTAAGCACTAAGTACATATaGAGGTGGAGGGGCTTCATG +
Preference number: 4 (lower is better)
Translates to: TPAVKLTLLPPPFAVQCVSTKYI*RWRGFM
Trigger: CATGAAGCCCCTCCACCTGCATATGTACTTAGTGCT...TACACACTGAACTGCAAATGGTGGGGGCAGCAGAGTGAGCTTTACTGCTGGTGT
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000118282.9
ENSMUST00000232179.2
CDS-3UTR GCA 90 bp AGTTACGAACTTGTCTTCATGTACACCAGCAGTAAAGCTCACTCTGCTGCCCCCTCTTGGTCACGTCGGTaGAGAGAACACACAAGGGAT +
Preference number: 4 (lower is better)
Translates to: SYELVFMYTSSKAHSAAPSWSRR*REHTRD
Trigger: ATCCCTTGTGTGTTCTCTGCACCGACGTGACCAAGA...GGGGGCAGCAGAGTGAGCTTTACTGCTGGTGTACATGAAGACAAGTTCGTAACT
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000118282.9
ENSMUST00000232179.2
CDS-3UTR GCA 90 bp GCTCACTCTGCTGCCCCCACCATTTGCAGTTCAGTGTGTATGCGGCGGTCTTGCTTTTCCTTTGTCAAATaGCAAAATGCTCCCATCACT +
Preference number: 4 (lower is better)
Translates to: AHSAAPTICSSVCMRRSCFSFVK*QNAPIT
Trigger: AGTGATGGGAGCATTTTGGCATTTGACAAAGGAAAA...GCAAGACCGCCGCATACACACTGAACTGCAAATGGTGGGGGCAGCAGAGTGAGC
50% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000118282.9
ENSMUST00000232179.2
CDS-3UTR GCA 90 bp TCATGTACACCAGCAGTAAAGCTCACTCTGCTGCCCCCACCATTTGCAGTTCAGGAGTCAGCTGTCTCATaGAATGTCATCAGCAACTCC +
Preference number: 4 (lower is better)
Translates to: SCTPAVKLTLLPPPFAVQESAVS*NVISNS
Trigger: GGAGTTGCTGATGACATTGCATGAGACAGCTGACTC...CTGAACTGCAAATGGTGGGGGCAGCAGAGTGAGCTTTACTGCTGGTGTACATGA
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000118282.9
ENSMUST00000232179.2
CDS-3UTR GCA 90 bp GTTCTCCCACTGAGCCACACTCCAGCCCTACCTACATTCATTCTAATGAGGGATAAAAATCCTCGGACGTaGGCAGACAGCAGAGTTCTC +
Preference number: 4 (lower is better)
Translates to: VLPLSHTPALPTFILMRDKNPRT*ADSRVL
Trigger: GAGAACTCTGCTGTCTGCGCACGTCCGAGGATTTTT...ATCCCTCATTAGAATGAATGTAGGTAGGGCTGGAGTGTGGCTCAGTGGGAGAAC
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000118282.9
CDS-3UTR GCA 90 bp GCTCACTCTGCTGCCCCCACCATTTGCAGTTCAGTGTGTATGCGGCGGTCTTGCCTTGCTTGGGAGGAATaGTTAAAACAACTAGTGAAA +
Preference number: 4 (lower is better)
Translates to: AHSAAPTICSSVCMRRSCLAWEE*LKQLVK
Trigger: TTTCACTAGTTGTTTTAAGCATTCCTCCCAAGCAAG...GCAAGACCGCCGCATACACACTGAACTGCAAATGGTGGGGGCAGCAGAGTGAGC
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000118282.9
ENSMUST00000232179.2
CDS-3UTR GCA 90 bp ACACCAGCAGTAAAGCTCACTCTGCTGCCCCCACCATTTGCAGTTCAGTGTGTAGCTGTCTCCTTTCCTTaGCATCAGAACCCACACAAT +
Preference number: 4 (lower is better)
Translates to: TPAVKLTLLPPPFAVQCVAVSFP*HQNPHN
Trigger: ATTGTGTGGGTTCTGATGGCAAGGAAAGGAGACAGC...TACACACTGAACTGCAAATGGTGGGGGCAGCAGAGTGAGCTTTACTGCTGGTGT
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000118282.9
ENSMUST00000232179.2
CDS-3UTR GCA 90 bp GTTACGAACTTGTCTTCATGTACACCAGCAGTAAAGCTCACTCTGCTGCCCCCACACATCTGGAAGACCTaGTGCATGACAGCATCTTGC +
Preference number: 4 (lower is better)
Translates to: VTNLSSCTPAVKLTLLPPHIWKT*CMTASC
Trigger: GCAAGATGCTGTCATGCAGCAGGTCTTCCAGATGTG...TGGGGGCAGCAGAGTGAGCTTTACTGCTGGTGTACATGAAGACAAGTTCGTAAC
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000118282.9
ENSMUST00000232179.2
CDS-3UTR CCA 90 bp GTTCTCCCACTGAGCCACACTCCAGCCCTACCTACATTCATTCTAATGAGGGATGCTGGACAGCTATGGTaGAGAAATCCAGAGGACCTA +
Preference number: 4 (lower is better)
Translates to: VLPLSHTPALPTFILMRDAGQLW*RNPEDL
Trigger: TAGGTCCTCTGGATTTCTCCACCATAGCTGTCCAGC...ATCCCTCATTAGAATGAATGTAGGTAGGGCTGGAGTGTGGCTCAGTGGGAGAAC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000118282.9
CDS-3UTR CCA 90 bp TCATGTACACCAGCAGTAAAGCTCACTCTGCTGCCCCCACCATTTGCAGTTCAGTATGCTGGACAGCTATaGTGGAGAAATCCAGAGGAC +
Preference number: 4 (lower is better)
Translates to: SCTPAVKLTLLPPPFAVQYAGQL*WRNPED
Trigger: GTCCTCTGGATTTCTCCACCATAGCTGTCCAGCATA...CTGAACTGCAAATGGTGGGGGCAGCAGAGTGAGCTTTACTGCTGGTGTACATGA
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000118282.9
ENSMUST00000232179.2
CDS-3UTR CCA 90 bp TACAGGTTAGGCACATGTTCTCCCACTGAGCCACACTCCAGCCCTACCTACATTGCTGAGCGGCTTGCTTaGGAGGAATGCTTAAAACAA +
Preference number: 4 (lower is better)
Translates to: YRLGTCSPTEPHSSPTYIAERLA*EECLKQ
Trigger: TTGTTTTAAGCATTCCTCCCAAGCAAGCCGCTCAGC...AATGTAGGTAGGGCTGGAGTGTGGCTCAGTGGGAGAACATGTGCCTAACCTGTA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000118282.9
CDS-3UTR CCA 90 bp AGTTACGAACTTGTCTTCATGTACACCAGCAGTAAAGCTCACTCTGCTGCCCCCTGGAGGAGGAGATGCTaGTCTCCAGGTCGTAAGTTA +
Preference number: 4 (lower is better)
Translates to: SYELVFMYTSSKAHSAAPWRRRC*SPGRKL
Trigger: TAACTTACGACCTGGAGACCAGCATCTCCTCCTCCA...GGGGGCAGCAGAGTGAGCTTTACTGCTGGTGTACATGAAGACAAGTTCGTAACT
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000118282.9
ENSMUST00000232179.2
CDS-3UTR TCA 90 bp ACACCAGCAGTAAAGCTCACTCTGCTGCCCCCACCATTTGCAGTTCAGTGTGTACCTCGGCTTCCTATATaGCTTATCTCATTCACTAGC +
Preference number: 4 (lower is better)
Translates to: TPAVKLTLLPPPFAVQCVPRLPI*LISFTS
Trigger: GCTAGTGAATGAGATAAGTCATATAGGAAGCCGAGG...TACACACTGAACTGCAAATGGTGGGGGCAGCAGAGTGAGCTTTACTGCTGGTGT
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000118282.9
ENSMUST00000232179.2
CDS-3UTR TCA 90 bp AGCTCACTCTGCTGCCCCCACCATTTGCAGTTCAGTGTGTATGCGGCGGTCTTGAAGATAGTGATCCAATaGTTCCTTGAGATTTTGCTG +
Preference number: 4 (lower is better)
Translates to: SSLCCPHHLQFSVYAAVLKIVIQ*FLEILL
Trigger: CAGCAAAATCTCAAGGAATCATTGGATCACTATCTT...CAAGACCGCCGCATACACACTGAACTGCAAATGGTGGGGGCAGCAGAGTGAGCT
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000118282.9
ENSMUST00000232179.2
CDS-3UTR TCA 90 bp AGTTACGAACTTGTCTTCATGTACACCAGCAGTAAAGCTCACTCTGCTGCCCCCCCTGAAATAATCTGTTaGCTGACCCTGCAGCCAACA +
Preference number: 4 (lower is better)
Translates to: SYELVFMYTSSKAHSAAPPEIIC*LTLQPT
Trigger: TGTTGGCTGCAGGGTCAGTCAACAGATTATTTCAGG...GGGGGCAGCAGAGTGAGCTTTACTGCTGGTGTACATGAAGACAAGTTCGTAACT
49% GC, longest homopolymer 7 nt, total homopolymer stretches 7 nt.
Matches the following 2 transcripts:
ENSMUST00000118282.9
ENSMUST00000232179.2
CDS-3UTR TCA 90 bp AGCTCACTCTGCTGCCCCCACCATTTGCAGTTCAGTGTGTATGCGGCGGTCTTGGAGAAGACCTTTTGTTaGTGTAGTGAATCAGAGTAT +
Preference number: 4 (lower is better)
Translates to: SSLCCPHHLQFSVYAAVLEKTFC*CSESEY
Trigger: ATACTCTGATTCACTACATCAACAAAAGGTCTTCTC...CAAGACCGCCGCATACACACTGAACTGCAAATGGTGGGGGCAGCAGAGTGAGCT
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000118282.9
ENSMUST00000232179.2
CDS-3UTR TCA 90 bp GTTACGAACTTGTCTTCATGTACACCAGCAGTAAAGCTCACTCTGCTGCCCCCAAGCTCCAGTTCTCGCTaGACCTTTACTGTGTATCTG +
Preference number: 4 (lower is better)
Translates to: VTNLSSCTPAVKLTLLPPSSSSR*TFTVYL
Trigger: CAGATACACAGTAAAGGTTCAGCGAGAACTGGAGCT...TGGGGGCAGCAGAGTGAGCTTTACTGCTGGTGTACATGAAGACAAGTTCGTAAC
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000118282.9
ENSMUST00000232179.2
CDS-3UTR GCA 90 bp GTTCTCCCACTGAGCCACACTCCAGCCCTACCTACATTCATTCTAATGAGGGATGTAACACATATGGGATaGGTTCTCCACGTCGCTGTT +
Preference number: 4 (lower is better)
Translates to: VLPLSHTPALPTFILMRDVTHMG*VLHVAV
Trigger: AACAGCGACGTGGAGAACGCATCCCATATGTGTTAC...ATCCCTCATTAGAATGAATGTAGGTAGGGCTGGAGTGTGGCTCAGTGGGAGAAC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000118282.9
CDS-3UTR GCA 90 bp CTGAGCCACACTCCAGCCCTACCTACATTCATTCTAATGAGGGATTCCCATGATTCTTGGTCACGTCGGTaGAGAGAACACACAAGGGAT +
Preference number: 4 (lower is better)
Translates to: LSHTPALPTFILMRDSHDSWSRR*REHTRD
Trigger: ATCCCTTGTGTGTTCTCTGCACCGACGTGACCAAGA...ATCATGGGAATCCCTCATTAGAATGAATGTAGGTAGGGCTGGAGTGTGGCTCAG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000118282.9
CDS-3UTR GCA 90 bp GTTACGAACTTGTCTTCATGTACACCAGCAGTAAAGCTCACTCTGCTGCCCCCAGAGTCAGCTGTCTCATaGAATGTCATCAGCAACTCC +
Preference number: 4 (lower is better)
Translates to: VTNLSSCTPAVKLTLLPPESAVS*NVISNS
Trigger: GGAGTTGCTGATGACATTGCATGAGACAGCTGACTC...TGGGGGCAGCAGAGTGAGCTTTACTGCTGGTGTACATGAAGACAAGTTCGTAAC
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000118282.9
ENSMUST00000232179.2
CDS-3UTR GCA 90 bp CTGAGCCACACTCCAGCCCTACCTACATTCATTCTAATGAGGGATTCCCATGATATCTGGAAGACCTGCTaGATGACAGCATCTTGCCTC +
Preference number: 4 (lower is better)
Translates to: LSHTPALPTFILMRDSHDIWKTC*MTASCL
Trigger: GAGGCAAGATGCTGTCATGCAGCAGGTCTTCCAGAT...ATCATGGGAATCCCTCATTAGAATGAATGTAGGTAGGGCTGGAGTGTGGCTCAG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000118282.9
CDS-3UTR GCA 90 bp TACAGGTTAGGCACATGTTCTCCCACTGAGCCACACTCCAGCCCTACCTACATTTCTGCAGTAGTGTATTaGACATCTGGAAGACCTGCT +
Preference number: 4 (lower is better)
Translates to: YRLGTCSPTEPHSSPTYISAVVY*TSGRPA
Trigger: AGCAGGTCTTCCAGATGTGCAATACACTACTGCAGA...AATGTAGGTAGGGCTGGAGTGTGGCTCAGTGGGAGAACATGTGCCTAACCTGTA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000118282.9
CDS-3UTR GCA 90 bp AGTTACGAACTTGTCTTCATGTACACCAGCAGTAAAGCTCACTCTGCTGCCCCCAAGATATTCTGTACGTaGCTGTCGCCAAGTCCAAGG +
Preference number: 4 (lower is better)
Translates to: SYELVFMYTSSKAHSAAPKIFCT*LSPSPR
Trigger: CCTTGGACTTGGCGACAGGCACGTACAGAATATCTT...GGGGGCAGCAGAGTGAGCTTTACTGCTGGTGTACATGAAGACAAGTTCGTAACT
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000118282.9
ENSMUST00000232179.2
CDS-3UTR CCA 90 bp TACAGGTTAGGCACATGTTCTCCCACTGAGCCACACTCCAGCCCTACCTACATTGTCTGGAGCTCTGTGTaGTGGCTGATACATTTGATT +
Preference number: 4 (lower is better)
Translates to: YRLGTCSPTEPHSSPTYIVWSSV*WLIHLI
Trigger: AATCAAATGTATCAGCCACCACACAGAGCTCCAGAC...AATGTAGGTAGGGCTGGAGTGTGGCTCAGTGGGAGAACATGTGCCTAACCTGTA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000118282.9
CDS-3UTR CCA 90 bp TACAGGTTAGGCACATGTTCTCCCACTGAGCCACACTCCAGCCCTACCTACATTATTACTCTGAAGAATTaGAGGCAGCTCTGTGCTGTC +
Preference number: 4 (lower is better)
Translates to: YRLGTCSPTEPHSSPTYIITLKN*RQLCAV
Trigger: GACAGCACAGAGCTGCCTCCAATTCTTCAGAGTAAT...AATGTAGGTAGGGCTGGAGTGTGGCTCAGTGGGAGAACATGTGCCTAACCTGTA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000118282.9
CDS-3UTR CCA 90 bp TCATGTACACCAGCAGTAAAGCTCACTCTGCTGCCCCCACCATTTGCAGTTCAGTACTCCGTGATCCAATaGCTTTTTCGTACAGGATGC +
Preference number: 4 (lower is better)
Translates to: SCTPAVKLTLLPPPFAVQYSVIQ*LFRTGC
Trigger: GCATCCTGTACGAAAAAGCCATTGGATCACGGAGTA...CTGAACTGCAAATGGTGGGGGCAGCAGAGTGAGCTTTACTGCTGGTGTACATGA
49% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000118282.9
ENSMUST00000232179.2
CDS-3UTR CCA 90 bp TCATGTACACCAGCAGTAAAGCTCACTCTGCTGCCCCCACCATTTGCAGTTCAGTTCATCATCTTCCCCTaGATGTACTCCGTGATCCAA +
Preference number: 4 (lower is better)
Translates to: SCTPAVKLTLLPPPFAVQFIIFP*MYSVIQ
Trigger: TTGGATCACGGAGTACATCCAGGGGAAGATGATGAA...CTGAACTGCAAATGGTGGGGGCAGCAGAGTGAGCTTTACTGCTGGTGTACATGA
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000118282.9
ENSMUST00000232179.2
CDS-3UTR CCA 90 bp TGTTCTCCCACTGAGCCACACTCCAGCCCTACCTACATTCATTCTAATGAGGGAAAGTACATATGCAGGTaGAGGGGCTTCATGAGATCG +
Preference number: 4 (lower is better)
Translates to: CSPTEPHSSPTYIHSNEGKYICR*RGFMRS
Trigger: CGATCTCATGAAGCCCCTCCACCTGCATATGTACTT...TCCCTCATTAGAATGAATGTAGGTAGGGCTGGAGTGTGGCTCAGTGGGAGAACA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000118282.9
CDS-3UTR CCA 90 bp GTTACGAACTTGTCTTCATGTACACCAGCAGTAAAGCTCACTCTGCTGCCCCCAAAGTACATATGCAGGTaGAGGGGCTTCATGAGATCG +
Preference number: 4 (lower is better)
Translates to: VTNLSSCTPAVKLTLLPPKYICR*RGFMRS
Trigger: CGATCTCATGAAGCCCCTCCACCTGCATATGTACTT...TGGGGGCAGCAGAGTGAGCTTTACTGCTGGTGTACATGAAGACAAGTTCGTAAC
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000118282.9
ENSMUST00000232179.2
CDS-3UTR CCA 90 bp TACAGGTTAGGCACATGTTCTCCCACTGAGCCACACTCCAGCCCTACCTACATTGTTTTACAGACATCTTaGTCACGTCGGTGCAGAGAA +
Preference number: 4 (lower is better)
Translates to: YRLGTCSPTEPHSSPTYIVLQTS*SRRCRE
Trigger: TTCTCTGCACCGACGTGACCAAGATGTCTGTAAAAC...AATGTAGGTAGGGCTGGAGTGTGGCTCAGTGGGAGAACATGTGCCTAACCTGTA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000118282.9
CDS-3UTR CCA 90 bp ACACCAGCAGTAAAGCTCACTCTGCTGCCCCCACCATTTGCAGTTCAGTGTGTAGTGCTTTCAAGCTTCTaGAGAAATCGCCTTGTCTCA +
Preference number: 4 (lower is better)
Translates to: TPAVKLTLLPPPFAVQCVVLSSF*RNRLVS
Trigger: TGAGACAAGGCGATTTCTCCAGAAGCTTGAAAGCAC...TACACACTGAACTGCAAATGGTGGGGGCAGCAGAGTGAGCTTTACTGCTGGTGT
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000118282.9
ENSMUST00000232179.2
CDS-3UTR CCA 90 bp CTTGTCTTCATGTACACCAGCAGTAAAGCTCACTCTGCTGCCCCCACCATTTGCGTGCTTTCAAGCTTCTaGAGAAATCGCCTTGTCTCA +
Preference number: 4 (lower is better)
Translates to: LVFMYTSSKAHSAAPTICVLSSF*RNRLVS
Trigger: TGAGACAAGGCGATTTCTCCAGAAGCTTGAAAGCAC...GCAAATGGTGGGGGCAGCAGAGTGAGCTTTACTGCTGGTGTACATGAAGACAAG
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000118282.9
ENSMUST00000232179.2
CDS-3UTR CCA 90 bp TACAGGTTAGGCACATGTTCTCCCACTGAGCCACACTCCAGCCCTACCTACATTAAAGAACCTCTACAATaGTCAGCAGGGTTTCCTGAG +
Preference number: 4 (lower is better)
Translates to: YRLGTCSPTEPHSSPTYIKEPLQ*SAGFPE
Trigger: CTCAGGAAACCCTGCTGACCATTGTAGAGGTTCTTT...AATGTAGGTAGGGCTGGAGTGTGGCTCAGTGGGAGAACATGTGCCTAACCTGTA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000118282.9
CDS-3UTR TCA 90 bp AGTTACGAACTTGTCTTCATGTACACCAGCAGTAAAGCTCACTCTGCTGCCCCCCCTCGGCTTCCTATATaGCTTATCTCATTCACTAGC +
Preference number: 4 (lower is better)
Translates to: SYELVFMYTSSKAHSAAPPRLPI*LISFTS
Trigger: GCTAGTGAATGAGATAAGTCATATAGGAAGCCGAGG...GGGGGCAGCAGAGTGAGCTTTACTGCTGGTGTACATGAAGACAAGTTCGTAACT
48% GC, longest homopolymer 7 nt, total homopolymer stretches 7 nt.
Matches the following 2 transcripts:
ENSMUST00000118282.9
ENSMUST00000232179.2
CDS-3UTR TCA 90 bp TCATGTACACCAGCAGTAAAGCTCACTCTGCTGCCCCCACCATTTGCAGTTCAGAATATTACGAGATCCTaGGGAATATTTCCCTCGGCT +
Preference number: 4 (lower is better)
Translates to: SCTPAVKLTLLPPPFAVQNITRS*GIFPSA
Trigger: AGCCGAGGGAAATATTCCTCAGGATCTCGTAATATT...CTGAACTGCAAATGGTGGGGGCAGCAGAGTGAGCTTTACTGCTGGTGTACATGA
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000118282.9
ENSMUST00000232179.2
CDS-3UTR TCA 90 bp AGTTACGAACTTGTCTTCATGTACACCAGCAGTAAAGCTCACTCTGCTGCCCCCATCGGCCTAAGAACCTaGGCATGTCTAAGAGAAGAT +
Preference number: 4 (lower is better)
Translates to: SYELVFMYTSSKAHSAAPIGLRT*ACLRED
Trigger: ATCTTCTCTTAGACATGCTCAGGTTCTTAGGCCGAT...GGGGGCAGCAGAGTGAGCTTTACTGCTGGTGTACATGAAGACAAGTTCGTAACT
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000118282.9
ENSMUST00000232179.2
CDS-3UTR TCA 90 bp TACAGGTTAGGCACATGTTCTCCCACTGAGCCACACTCCAGCCCTACCTACATTGCAACGACACATCTGTaGAATGAGAAGACCTTTTGT +
Preference number: 4 (lower is better)
Translates to: YRLGTCSPTEPHSSPTYIATTHL*NEKTFC
Trigger: ACAAAAGGTCTTCTCATTTCACAGATGTGTCGTTGC...AATGTAGGTAGGGCTGGAGTGTGGCTCAGTGGGAGAACATGTGCCTAACCTGTA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000118282.9
CDS-3UTR TCA 90 bp ACACCAGCAGTAAAGCTCACTCTGCTGCCCCCACCATTTGCAGTTCAGTGTGTAATAACTGCAACAAGCTaGCAACTAGCTTCACCACAA +
Preference number: 4 (lower is better)
Translates to: TPAVKLTLLPPPFAVQCVITATS*QLASPQ
Trigger: TTGTGGTGAAGCTAGTTGTCAGCTTGTTGCAGTTAT...TACACACTGAACTGCAAATGGTGGGGGCAGCAGAGTGAGCTTTACTGCTGGTGT
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000118282.9
ENSMUST00000232179.2
CDS-3UTR TCA 90 bp GCAGAAGTTACGAACTTGTCTTCATGTACACCAGCAGTAAAGCTCACTCTGCTGTTATTGAGGACTTCGTaGAATCCTAGGCCTCCCGTC +
Preference number: 4 (lower is better)
Translates to: AEVTNLSSCTPAVKLTLLLLRTS*NPRPPV
Trigger: GACGGGAGGCCTAGGATTTCACGAAGTCCTCAATAA...CAGCAGAGTGAGCTTTACTGCTGGTGTACATGAAGACAAGTTCGTAACTTCTGC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000118282.9
ENSMUST00000232179.2
CDS-3UTR GCA 90 bp TCATGTACACCAGCAGTAAAGCTCACTCTGCTGCCCCCACCATTTGCAGTTCAGTACACAGATGCTAAGTaGCAAAGTCAAGCAGCATAC +
Preference number: 4 (lower is better)
Translates to: SCTPAVKLTLLPPPFAVQYTDAK*QSQAAY
Trigger: GTATGCTGCTTGACTTTGGCACTTAGCATCTGTGTA...CTGAACTGCAAATGGTGGGGGCAGCAGAGTGAGCTTTACTGCTGGTGTACATGA
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000118282.9
ENSMUST00000232179.2
CDS-3UTR GCA 90 bp ACACCAGCAGTAAAGCTCACTCTGCTGCCCCCACCATTTGCAGTTCAGTGTGTAAAAGCAAACAAAGCCTaGTTTTCACAGACTGGGCTA +
Preference number: 4 (lower is better)
Translates to: TPAVKLTLLPPPFAVQCVKANKA*FSQTGL
Trigger: TAGCCCAGTCTGTGAAAAGCAGGCTTTGTTTGCTTT...TACACACTGAACTGCAAATGGTGGGGGCAGCAGAGTGAGCTTTACTGCTGGTGT
48% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000118282.9
ENSMUST00000232179.2
CDS-3UTR GCA 90 bp TCATGTACACCAGCAGTAAAGCTCACTCTGCTGCCCCCACCATTTGCAGTTCAGCTAGCTTCACCACAATaGCATCTTGTGGGTTATCTT +
Preference number: 4 (lower is better)
Translates to: SCTPAVKLTLLPPPFAVQLASPQ*HLVGYL
Trigger: AAGATAACCCACAAGATGGCATTGTGGTGAAGCTAG...CTGAACTGCAAATGGTGGGGGCAGCAGAGTGAGCTTTACTGCTGGTGTACATGA
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000118282.9
ENSMUST00000232179.2
CDS-3UTR GCA 90 bp GCAGAAGTTACGAACTTGTCTTCATGTACACCAGCAGTAAAGCTCACTCTGCTGAAAAATCCTCGGACGTaGGCAGACAGCAGAGTTCTC +
Preference number: 4 (lower is better)
Translates to: AEVTNLSSCTPAVKLTLLKNPRT*ADSRVL
Trigger: GAGAACTCTGCTGTCTGCGCACGTCCGAGGATTTTT...CAGCAGAGTGAGCTTTACTGCTGGTGTACATGAAGACAAGTTCGTAACTTCTGC
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000118282.9
ENSMUST00000232179.2
CDS-3UTR CCA 90 bp ACACCAGCAGTAAAGCTCACTCTGCTGCCCCCACCATTTGCAGTTCAGTGTGTACTTGACATTTTAGCCTaGGTGCTCTTTTGTTTGCAC +
Preference number: 4 (lower is better)
Translates to: TPAVKLTLLPPPFAVQCVLDILA*VLFCLH
Trigger: GTGCAAACAAAAGAGCACCCAGGCTAAAATGTCAAG...TACACACTGAACTGCAAATGGTGGGGGCAGCAGAGTGAGCTTTACTGCTGGTGT
48% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000118282.9
ENSMUST00000232179.2
CDS-3UTR CCA 90 bp AGTTACGAACTTGTCTTCATGTACACCAGCAGTAAAGCTCACTCTGCTGCCCCCTACTCCGTGATCCAATaGCTTTTTCGTACAGGATGC +
Preference number: 4 (lower is better)
Translates to: SYELVFMYTSSKAHSAAPYSVIQ*LFRTGC
Trigger: GCATCCTGTACGAAAAAGCCATTGGATCACGGAGTA...GGGGGCAGCAGAGTGAGCTTTACTGCTGGTGTACATGAAGACAAGTTCGTAACT
48% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000118282.9
ENSMUST00000232179.2
CDS-3UTR CCA 90 bp GTTCTCCCACTGAGCCACACTCCAGCCCTACCTACATTCATTCTAATGAGGGATTTCATCATCTTCCCCTaGATGTACTCCGTGATCCAA +
Preference number: 4 (lower is better)
Translates to: VLPLSHTPALPTFILMRDFIIFP*MYSVIQ
Trigger: TTGGATCACGGAGTACATCCAGGGGAAGATGATGAA...ATCCCTCATTAGAATGAATGTAGGTAGGGCTGGAGTGTGGCTCAGTGGGAGAAC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000118282.9
CDS-3UTR CCA 90 bp GCAGAAGTTACGAACTTGTCTTCATGTACACCAGCAGTAAAGCTCACTCTGCTGCTGCTTTTCACAGACTaGGCTACAGTGCAAGACCAC +
Preference number: 4 (lower is better)
Translates to: AEVTNLSSCTPAVKLTLLLLFTD*ATVQDH
Trigger: GTGGTCTTGCACTGTAGCCCAGTCTGTGAAAAGCAG...CAGCAGAGTGAGCTTTACTGCTGGTGTACATGAAGACAAGTTCGTAACTTCTGC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000118282.9
ENSMUST00000232179.2
CDS-3UTR CCA 90 bp ACACCAGCAGTAAAGCTCACTCTGCTGCCCCCACCATTTGCAGTTCAGTGTGTAACGATTCATGGTAACTaGTTCCTTCTACTTCTTGGC +
Preference number: 4 (lower is better)
Translates to: TPAVKLTLLPPPFAVQCVTIHGN*FLLLLG
Trigger: GCCAAGAAGTAGAAGGAACCAGTTACCATGAATCGT...TACACACTGAACTGCAAATGGTGGGGGCAGCAGAGTGAGCTTTACTGCTGGTGT
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000118282.9
ENSMUST00000232179.2
CDS-3UTR CCA 90 bp AGCTCACTCTGCTGCCCCCACCATTTGCAGTTCAGTGTGTATGCGGCGGTCTTGTTACTGTGTATCTGTTaGTCTGAATTTTATGTTCCC +
Preference number: 4 (lower is better)
Translates to: SSLCCPHHLQFSVYAAVLLLCIC*SEFYVP
Trigger: GGGAACATAAAATTCAGACCAACAGATACACAGTAA...CAAGACCGCCGCATACACACTGAACTGCAAATGGTGGGGGCAGCAGAGTGAGCT
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000118282.9
ENSMUST00000232179.2
CDS-3UTR CCA 90 bp AGTTACGAACTTGTCTTCATGTACACCAGCAGTAAAGCTCACTCTGCTGCCCCCTTACTTCTGATGGAGTaGATGATTCTGGTTGCAGCC +
Preference number: 4 (lower is better)
Translates to: SYELVFMYTSSKAHSAAPLLLME*MILVAA
Trigger: GGCTGCAACCAGAATCATCCACTCCATCAGAAGTAA...GGGGGCAGCAGAGTGAGCTTTACTGCTGGTGTACATGAAGACAAGTTCGTAACT
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000118282.9
ENSMUST00000232179.2
CDS-3UTR CCA 90 bp TCATGTACACCAGCAGTAAAGCTCACTCTGCTGCCCCCACCATTTGCAGTTCAGGATTGGCTGGTTGGCTaGAATATTGATGCCTTTTCT +
Preference number: 4 (lower is better)
Translates to: SCTPAVKLTLLPPPFAVQDWLVG*NIDAFS
Trigger: AGAAAAGGCATCAATATTCCAGCCAACCAGCCAATC...CTGAACTGCAAATGGTGGGGGCAGCAGAGTGAGCTTTACTGCTGGTGTACATGA
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000118282.9
ENSMUST00000232179.2
CDS-3UTR CCA 90 bp TGTTCTCCCACTGAGCCACACTCCAGCCCTACCTACATTCATTCTAATGAGGGAAAAAGGAACTGTTTCTaGAGTGGGAAGGATCTTCCC +
Preference number: 4 (lower is better)
Translates to: CSPTEPHSSPTYIHSNEGKRNCF*SGKDLP
Trigger: GGGAAGATCCTTCCCACTCCAGAAACAGTTCCTTTT...TCCCTCATTAGAATGAATGTAGGTAGGGCTGGAGTGTGGCTCAGTGGGAGAACA
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000118282.9
CDS-3UTR TCA 90 bp TACAGGTTAGGCACATGTTCTCCCACTGAGCCACACTCCAGCCCTACCTACATTACTGTTTCAGGATCCTaGATCAGGCGCTTAAATTTA +
Preference number: 4 (lower is better)
Translates to: YRLGTCSPTEPHSSPTYITVSGS*IRRLNL
Trigger: TAAATTTAAGCGCCTGATTCAGGATCCTGAAACAGT...AATGTAGGTAGGGCTGGAGTGTGGCTCAGTGGGAGAACATGTGCCTAACCTGTA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000118282.9
CDS-3UTR TCA 90 bp ACACCAGCAGTAAAGCTCACTCTGCTGCCCCCACCATTTGCAGTTCAGTGTGTACATTCTGGCACACTTTaGAAAAACTTCATTGCAGCT +
Preference number: 4 (lower is better)
Translates to: TPAVKLTLLPPPFAVQCVHSGTL*KNFIAA
Trigger: AGCTGCAATGAAGTTTTTTCAAAGTGTGCCAGAATG...TACACACTGAACTGCAAATGGTGGGGGCAGCAGAGTGAGCTTTACTGCTGGTGT
47% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000118282.9
ENSMUST00000232179.2
CDS-3UTR TCA 90 bp AGTTACGAACTTGTCTTCATGTACACCAGCAGTAAAGCTCACTCTGCTGCCCCCGCCTCAAGCAATGTTTaGAGACACTTTACTAATGCC +
Preference number: 4 (lower is better)
Translates to: SYELVFMYTSSKAHSAAPASSNV*RHFTNA
Trigger: GGCATTAGTAAAGTGTCTTCAAACATTGCTTGAGGC...GGGGGCAGCAGAGTGAGCTTTACTGCTGGTGTACATGAAGACAAGTTCGTAACT
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000118282.9
ENSMUST00000232179.2
CDS-3UTR TCA 90 bp ACACCAGCAGTAAAGCTCACTCTGCTGCCCCCACCATTTGCAGTTCAGTGTGTACCTTGTCTCATATCCTaGAATAATCTGTTGACTGAC +
Preference number: 4 (lower is better)
Translates to: TPAVKLTLLPPPFAVQCVPCLIS*NNLLTD
Trigger: GTCAGTCAACAGATTATTTCAGGATATGAGACAAGG...TACACACTGAACTGCAAATGGTGGGGGCAGCAGAGTGAGCTTTACTGCTGGTGT
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000118282.9
ENSMUST00000232179.2
CDS-3UTR TCA 90 bp AGTTACGAACTTGTCTTCATGTACACCAGCAGTAAAGCTCACTCTGCTGCCCCCTTAAAAGATGTCTGCTaGAACTTCAGAGGGAGTGCT +
Preference number: 4 (lower is better)
Translates to: SYELVFMYTSSKAHSAAPLKDVC*NFRGSA
Trigger: AGCACTCCCTCTGAAGTTTCAGCAGACATCTTTTAA...GGGGGCAGCAGAGTGAGCTTTACTGCTGGTGTACATGAAGACAAGTTCGTAACT
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000118282.9
ENSMUST00000232179.2
CDS-3UTR TCA 90 bp ACACCAGCAGTAAAGCTCACTCTGCTGCCCCCACCATTTGCAGTTCAGTGTGTAACCTTTTTCACAAGATaGGGTTCTAGTCTGTTTTCC +
Preference number: 4 (lower is better)
Translates to: TPAVKLTLLPPPFAVQCVTFFTR*GSSLFS
Trigger: GGAAAACAGACTAGAACCTCATCTTGTGAAAAAGGT...TACACACTGAACTGCAAATGGTGGGGGCAGCAGAGTGAGCTTTACTGCTGGTGT
47% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 2 transcripts:
ENSMUST00000118282.9
ENSMUST00000232179.2
CDS-3UTR TCA 90 bp ACACCAGCAGTAAAGCTCACTCTGCTGCCCCCACCATTTGCAGTTCAGTGTGTAAGAAGATCTAGCATCTaGTCTTTATGTTGCTCCAGT +
Preference number: 4 (lower is better)
Translates to: TPAVKLTLLPPPFAVQCVRRSSI*SLCCSS
Trigger: ACTGGAGCAACATAAAGATCAGATGCTAGATCTTCT...TACACACTGAACTGCAAATGGTGGGGGCAGCAGAGTGAGCTTTACTGCTGGTGT
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000118282.9
ENSMUST00000232179.2
CDS-3UTR TCA 90 bp GTTCTCCCACTGAGCCACACTCCAGCCCTACCTACATTCATTCTAATGAGGGATATTCGAGCAGCCAATTaGTACATGAGAGGCAAAAAC +
Preference number: 4 (lower is better)
Translates to: VLPLSHTPALPTFILMRDIRAAN*YMRGKN
Trigger: GTTTTTGCCTCTCATGTATCAATTGGCTGCTCGAAT...ATCCCTCATTAGAATGAATGTAGGTAGGGCTGGAGTGTGGCTCAGTGGGAGAAC
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000118282.9
CDS-3UTR TCA 90 bp GCAGAAGTTACGAACTTGTCTTCATGTACACCAGCAGTAAAGCTCACTCTGCTGGGCACTGATTGGCACTaGAATCATTTGGCCTGTATC +
Preference number: 4 (lower is better)
Translates to: AEVTNLSSCTPAVKLTLLGTDWH*NHLACI
Trigger: GATACAGGCCAAATGATTTCAGTGCCAATCAGTGCC...CAGCAGAGTGAGCTTTACTGCTGGTGTACATGAAGACAAGTTCGTAACTTCTGC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000118282.9
ENSMUST00000232179.2
CDS-3UTR TCA 90 bp ATTCACTTAAGTAATTCCTGTCCAAATATGGTGGGTGAGATGTCATTTCTGAAGCCTGTCCACCCACACTaGGCACAGTGCCTTCCTCCA +
Preference number: 4 (lower is better)
Translates to: IHLSNSCPNMVGEMSFLKPVHPH*AQCLPP
Trigger: TGGAGGAAGGCACTGTGCTCAGTGTGGGTGGACAGG...CTTCAGAAATGACATCTCACCCACCATATTTGGACAGGAATTACTTAAGTGAAT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000118282.9
ENSMUST00000232179.2
CDS-3UTR GCA 90 bp AGTTACGAACTTGTCTTCATGTACACCAGCAGTAAAGCTCACTCTGCTGCCCCCAAGAATTTCATCTCCTaGTTCACACACCCGTTTTCG +
Preference number: 4 (lower is better)
Translates to: SYELVFMYTSSKAHSAAPKNFIS*FTHPFS
Trigger: CGAAAACGGGTGTGTGAAGCAGGAGATGAAATTCTT...GGGGGCAGCAGAGTGAGCTTTACTGCTGGTGTACATGAAGACAAGTTCGTAACT
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000118282.9
ENSMUST00000232179.2
CDS-3UTR GCA 90 bp ACACCAGCAGTAAAGCTCACTCTGCTGCCCCCACCATTTGCAGTTCAGTGTGTACTGGTAACAGATATCTaGCATCAGGTCAATCAGATT +
Preference number: 4 (lower is better)
Translates to: TPAVKLTLLPPPFAVQCVLVTDI*HQVNQI
Trigger: AATCTGATTGACCTGATGGCAGATATCTGTTACCAG...TACACACTGAACTGCAAATGGTGGGGGCAGCAGAGTGAGCTTTACTGCTGGTGT
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000118282.9
ENSMUST00000232179.2
CDS-3UTR GCA 90 bp CTTGTCTTCATGTACACCAGCAGTAAAGCTCACTCTGCTGCCCCCACCATTTGCCCAGGTTTGATTTCTTaGCTTGACATAAGGCAACTT +
Preference number: 4 (lower is better)
Translates to: LVFMYTSSKAHSAAPTICPGLIS*LDIRQL
Trigger: AAGTTGCCTTATGTCAAGGCAAGAAATCAAACCTGG...GCAAATGGTGGGGGCAGCAGAGTGAGCTTTACTGCTGGTGTACATGAAGACAAG
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000118282.9
ENSMUST00000232179.2
CDS-3UTR GCA 90 bp TGTTCTCCCACTGAGCCACACTCCAGCCCTACCTACATTCATTCTAATGAGGGAGATTCCTTGAGATTTTaGTGGACAGAGAAGCCAACA +
Preference number: 4 (lower is better)
Translates to: CSPTEPHSSPTYIHSNEGDSLRF*WTEKPT
Trigger: TGTTGGCTTCTCTGTCCAGCAAAATCTCAAGGAATC...TCCCTCATTAGAATGAATGTAGGTAGGGCTGGAGTGTGGCTCAGTGGGAGAACA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000118282.9
CDS-3UTR GCA 90 bp AGTTACGAACTTGTCTTCATGTACACCAGCAGTAAAGCTCACTCTGCTGCCCCCGATTCCTTGAGATTTTaGTGGACAGAGAAGCCAACA +
Preference number: 4 (lower is better)
Translates to: SYELVFMYTSSKAHSAAPDSLRF*WTEKPT
Trigger: TGTTGGCTTCTCTGTCCAGCAAAATCTCAAGGAATC...GGGGGCAGCAGAGTGAGCTTTACTGCTGGTGTACATGAAGACAAGTTCGTAACT
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000118282.9
ENSMUST00000232179.2
CDS-3UTR GCA 90 bp CTTGTCTTCATGTACACCAGCAGTAAAGCTCACTCTGCTGCCCCCACCATTTGCATTATTTGTCTCAGCTaGTTGTTCACAAATGGCCAG +
Preference number: 4 (lower is better)
Translates to: LVFMYTSSKAHSAAPTICIICLS*LFTNGQ
Trigger: CTGGCCATTTGTGAACAAGCAGCTGAGACAAATAAT...GCAAATGGTGGGGGCAGCAGAGTGAGCTTTACTGCTGGTGTACATGAAGACAAG
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000118282.9
ENSMUST00000232179.2
CDS-3UTR GCA 90 bp TACAGGTTAGGCACATGTTCTCCCACTGAGCCACACTCCAGCCCTACCTACATTTGTGCTTCTTCCAAATaGCACTCAGAAATTCCACAA +
Preference number: 4 (lower is better)
Translates to: YRLGTCSPTEPHSSPTYICASSK*HSEIPQ
Trigger: TTGTGGAATTTCTGAGTGGCATTTGGAAGAAGCACA...AATGTAGGTAGGGCTGGAGTGTGGCTCAGTGGGAGAACATGTGCCTAACCTGTA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000118282.9
CDS-3UTR GCA 90 bp CTTGTCTTCATGTACACCAGCAGTAAAGCTCACTCTGCTGCCCCCACCATTTGCTGTGCTTCTTCCAAATaGCACTCAGAAATTCCACAA +
Preference number: 4 (lower is better)
Translates to: LVFMYTSSKAHSAAPTICCASSK*HSEIPQ
Trigger: TTGTGGAATTTCTGAGTGGCATTTGGAAGAAGCACA...GCAAATGGTGGGGGCAGCAGAGTGAGCTTTACTGCTGGTGTACATGAAGACAAG
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000118282.9
ENSMUST00000232179.2
CDS-3UTR GCA 90 bp GCAGAAGTTACGAACTTGTCTTCATGTACACCAGCAGTAAAGCTCACTCTGCTGGCTGTCTCCTTTCCTTaGCATCAGAACCCACACAAT +
Preference number: 4 (lower is better)
Translates to: AEVTNLSSCTPAVKLTLLAVSFP*HQNPHN
Trigger: ATTGTGTGGGTTCTGATGGCAAGGAAAGGAGACAGC...CAGCAGAGTGAGCTTTACTGCTGGTGTACATGAAGACAAGTTCGTAACTTCTGC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000118282.9
ENSMUST00000232179.2
CDS-3UTR GCA 90 bp GCAGAAGTTACGAACTTGTCTTCATGTACACCAGCAGTAAAGCTCACTCTGCTGAAGATATTCTGTACGTaGCTGTCGCCAAGTCCAAGG +
Preference number: 4 (lower is better)
Translates to: AEVTNLSSCTPAVKLTLLKIFCT*LSPSPR
Trigger: CCTTGGACTTGGCGACAGGCACGTACAGAATATCTT...CAGCAGAGTGAGCTTTACTGCTGGTGTACATGAAGACAAGTTCGTAACTTCTGC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000118282.9
ENSMUST00000232179.2
CDS-3UTR GCA 90 bp TGTTCTCCCACTGAGCCACACTCCAGCCCTACCTACATTCATTCTAATGAGGGAACAAGCTCTGCCGACTaGTCGTTTATCAAGATATTC +
Preference number: 4 (lower is better)
Translates to: CSPTEPHSSPTYIHSNEGTSSAD*SFIKIF
Trigger: GAATATCTTGATAAACGAGCAGTCGGCAGAGCTTGT...TCCCTCATTAGAATGAATGTAGGTAGGGCTGGAGTGTGGCTCAGTGGGAGAACA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000118282.9
CDS-3UTR GCA 90 bp TACAGGTTAGGCACATGTTCTCCCACTGAGCCACACTCCAGCCCTACCTACATTTCATCTTCTGGTCTCTaGTGTAGATACAGAGCTTTT +
Preference number: 4 (lower is better)
Translates to: YRLGTCSPTEPHSSPTYISSSGL*CRYRAF
Trigger: AAAAGCTCTGTATCTACAGCAGAGACCAGAAGATGA...AATGTAGGTAGGGCTGGAGTGTGGCTCAGTGGGAGAACATGTGCCTAACCTGTA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000118282.9
CDS-3UTR GCA 90 bp CTTGTCTTCATGTACACCAGCAGTAAAGCTCACTCTGCTGCCCCCACCATTTGCTCATCTTCTGGTCTCTaGTGTAGATACAGAGCTTTT +
Preference number: 4 (lower is better)
Translates to: LVFMYTSSKAHSAAPTICSSSGL*CRYRAF
Trigger: AAAAGCTCTGTATCTACAGCAGAGACCAGAAGATGA...GCAAATGGTGGGGGCAGCAGAGTGAGCTTTACTGCTGGTGTACATGAAGACAAG
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000118282.9
ENSMUST00000232179.2
CDS-3UTR CCA 90 bp GTTCTCCCACTGAGCCACACTCCAGCCCTACCTACATTCATTCTAATGAGGGATCTTGACATTTTAGCCTaGGTGCTCTTTTGTTTGCAC +
Preference number: 4 (lower is better)
Translates to: VLPLSHTPALPTFILMRDLDILA*VLFCLH
Trigger: GTGCAAACAAAAGAGCACCCAGGCTAAAATGTCAAG...ATCCCTCATTAGAATGAATGTAGGTAGGGCTGGAGTGTGGCTCAGTGGGAGAAC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000118282.9
CDS-3UTR CCA 90 bp TGTTCTCCCACTGAGCCACACTCCAGCCCTACCTACATTCATTCTAATGAGGGAAGCTCTGGCTCCTTGTaGATGATGGATATAAATCTG +
Preference number: 4 (lower is better)
Translates to: CSPTEPHSSPTYIHSNEGSSGSL*MMDINL
Trigger: CAGATTTATATCCATCATCCACAAGGAGCCAGAGCT...TCCCTCATTAGAATGAATGTAGGTAGGGCTGGAGTGTGGCTCAGTGGGAGAACA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000118282.9
CDS-3UTR CCA 90 bp TCATGTACACCAGCAGTAAAGCTCACTCTGCTGCCCCCACCATTTGCAGTTCAGGTACACTGTAATCAGTaGATTCCCTTTGTGTCACAT +
Preference number: 4 (lower is better)
Translates to: SCTPAVKLTLLPPPFAVQVHCNQ*IPFVSH
Trigger: ATGTGACACAAAGGGAATCCACTGATTACAGTGTAC...CTGAACTGCAAATGGTGGGGGCAGCAGAGTGAGCTTTACTGCTGGTGTACATGA
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000118282.9
ENSMUST00000232179.2
CDS-3UTR CCA 90 bp GCAGAAGTTACGAACTTGTCTTCATGTACACCAGCAGTAAAGCTCACTCTGCTGCAGCTAAAGGACTCATaGCACCAACAGCATTCTGGT +
Preference number: 4 (lower is better)
Translates to: AEVTNLSSCTPAVKLTLLQLKDS*HQQHSG
Trigger: ACCAGAATGCTGTTGGTGCCATGAGTCCTTTAGCTG...CAGCAGAGTGAGCTTTACTGCTGGTGTACATGAAGACAAGTTCGTAACTTCTGC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000118282.9
ENSMUST00000232179.2
CDS-3UTR CCA 90 bp TCATGTACACCAGCAGTAAAGCTCACTCTGCTGCCCCCACCATTTGCAGTTCAGTGCAGTAAAACATCATaGATCAAGTATGGCAGCAAC +
Preference number: 4 (lower is better)
Translates to: SCTPAVKLTLLPPPFAVQCSKTS*IKYGSN
Trigger: GTTGCTGCCATACTTGATCCATGATGTTTTACTGCA...CTGAACTGCAAATGGTGGGGGCAGCAGAGTGAGCTTTACTGCTGGTGTACATGA
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000118282.9
ENSMUST00000232179.2
CDS-3UTR CCA 90 bp AGTTACGAACTTGTCTTCATGTACACCAGCAGTAAAGCTCACTCTGCTGCCCCCACGATTCATGGTAACTaGTTCCTTCTACTTCTTGGC +
Preference number: 4 (lower is better)
Translates to: SYELVFMYTSSKAHSAAPTIHGN*FLLLLG
Trigger: GCCAAGAAGTAGAAGGAACCAGTTACCATGAATCGT...GGGGGCAGCAGAGTGAGCTTTACTGCTGGTGTACATGAAGACAAGTTCGTAACT
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000118282.9
ENSMUST00000232179.2
CDS-3UTR TCA 90 bp CTTGTCTTCATGTACACCAGCAGTAAAGCTCACTCTGCTGCCCCCACCATTTGCACTTCTGTAAAAACCTaGAAACAGCATCCCAATTCA +
Preference number: 4 (lower is better)
Translates to: LVFMYTSSKAHSAAPTICTSVKT*KQHPNS
Trigger: TGAATTGGGATGCTGTTTTCAGGTTTTTACAGAAGT...GCAAATGGTGGGGGCAGCAGAGTGAGCTTTACTGCTGGTGTACATGAAGACAAG
46% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000118282.9
ENSMUST00000232179.2
CDS-3UTR TCA 90 bp TACAGGTTAGGCACATGTTCTCCCACTGAGCCACACTCCAGCCCTACCTACATTCTTTCACTGTATCCATaGCATAATTCAAGAGGTCTT +
Preference number: 4 (lower is better)
Translates to: YRLGTCSPTEPHSSPTYILSLYP*HNSRGL
Trigger: AAGACCTCTTGAATTATGTCATGGATACAGTGAAAG...AATGTAGGTAGGGCTGGAGTGTGGCTCAGTGGGAGAACATGTGCCTAACCTGTA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000118282.9
CDS-3UTR TCA 90 bp TCATGTACACCAGCAGTAAAGCTCACTCTGCTGCCCCCACCATTTGCAGTTCAGCAATCAGATTTTCCTTaGCAGCAATATTACGAGATC +
Preference number: 4 (lower is better)
Translates to: SCTPAVKLTLLPPPFAVQQSDFP*QQYYEI
Trigger: GATCTCGTAATATTGCTGTCAAGGAAAATCTGATTG...CTGAACTGCAAATGGTGGGGGCAGCAGAGTGAGCTTTACTGCTGGTGTACATGA
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000118282.9
ENSMUST00000232179.2
CDS-3UTR TCA 90 bp TGTTCTCCCACTGAGCCACACTCCAGCCCTACCTACATTCATTCTAATGAGGGACTAAACTACCTTGAATaGTGGCCTCAAGTAAACCAA +
Preference number: 4 (lower is better)
Translates to: CSPTEPHSSPTYIHSNEGLNYLE*WPQVNQ
Trigger: TTGGTTTACTTGAGGCCATCATTCAAGGTAGTTTAG...TCCCTCATTAGAATGAATGTAGGTAGGGCTGGAGTGTGGCTCAGTGGGAGAACA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000118282.9
CDS-3UTR TCA 90 bp AGTTACGAACTTGTCTTCATGTACACCAGCAGTAAAGCTCACTCTGCTGCCCCCCTAAACTACCTTGAATaGTGGCCTCAAGTAAACCAA +
Preference number: 4 (lower is better)
Translates to: SYELVFMYTSSKAHSAAPLNYLE*WPQVNQ
Trigger: TTGGTTTACTTGAGGCCATCATTCAAGGTAGTTTAG...GGGGGCAGCAGAGTGAGCTTTACTGCTGGTGTACATGAAGACAAGTTCGTAACT
46% GC, longest homopolymer 6 nt, total homopolymer stretches 6 nt.
Matches the following 2 transcripts:
ENSMUST00000118282.9
ENSMUST00000232179.2
CDS-3UTR TCA 90 bp CTTGTCTTCATGTACACCAGCAGTAAAGCTCACTCTGCTGCCCCCACCATTTGCTCAACTAAACTACCTTaGATGATGGCCTCAAGTAAA +
Preference number: 4 (lower is better)
Translates to: LVFMYTSSKAHSAAPTICSTKLP*MMASSK
Trigger: TTTACTTGAGGCCATCATTCAAGGTAGTTTAGTTGA...GCAAATGGTGGGGGCAGCAGAGTGAGCTTTACTGCTGGTGTACATGAAGACAAG
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000118282.9
ENSMUST00000232179.2
CDS-3UTR TCA 90 bp TGTTCTCCCACTGAGCCACACTCCAGCCCTACCTACATTCATTCTAATGAGGGAGAGCCACCTCATTATTaGCTCCTTTACAGAAAAACT +
Preference number: 4 (lower is better)
Translates to: CSPTEPHSSPTYIHSNEGEPPHY*LLYRKT
Trigger: AGTTTTTCTGTAAAGGAGTCAATAATGAGGTGGCTC...TCCCTCATTAGAATGAATGTAGGTAGGGCTGGAGTGTGGCTCAGTGGGAGAACA
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000118282.9
CDS-3UTR TCA 90 bp ACACCAGCAGTAAAGCTCACTCTGCTGCCCCCACCATTTGCAGTTCAGTGTGTACTTCATTGCAGCTTTTaGGTTTTTCATAGTGAGACT +
Preference number: 4 (lower is better)
Translates to: TPAVKLTLLPPPFAVQCVLHCSF*VFHSET
Trigger: AGTCTCACTATGAAAAACTCAAAAGCTGCAATGAAG...TACACACTGAACTGCAAATGGTGGGGGCAGCAGAGTGAGCTTTACTGCTGGTGT
46% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 2 transcripts:
ENSMUST00000118282.9
ENSMUST00000232179.2
CDS-3UTR TCA 90 bp ACACCAGCAGTAAAGCTCACTCTGCTGCCCCCACCATTTGCAGTTCAGTGTGTAAAGCCAACACTAGACTaGAATTTTTCTACAGCATAC +
Preference number: 4 (lower is better)
Translates to: TPAVKLTLLPPPFAVQCVKPTLD*NFSTAY
Trigger: GTATGCTGTAGAAAAATTTCAGTCTAGTGTTGGCTT...TACACACTGAACTGCAAATGGTGGGGGCAGCAGAGTGAGCTTTACTGCTGGTGT
46% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000118282.9
ENSMUST00000232179.2
CDS-3UTR TCA 90 bp CTTGTCTTCATGTACACCAGCAGTAAAGCTCACTCTGCTGCCCCCACCATTTGCAAGCCAACACTAGACTaGAATTTTTCTACAGCATAC +
Preference number: 4 (lower is better)
Translates to: LVFMYTSSKAHSAAPTICKPTLD*NFSTAY
Trigger: GTATGCTGTAGAAAAATTTCAGTCTAGTGTTGGCTT...GCAAATGGTGGGGGCAGCAGAGTGAGCTTTACTGCTGGTGTACATGAAGACAAG
46% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000118282.9
ENSMUST00000232179.2
CDS-3UTR TCA 90 bp CTTGTCTTCATGTACACCAGCAGTAAAGCTCACTCTGCTGCCCCCACCATTTGCAGGTTTGTCACTATATaGAGGACATTGCTTAGAATC +
Preference number: 4 (lower is better)
Translates to: LVFMYTSSKAHSAAPTICRFVTI*RTLLRI
Trigger: GATTCTAAGCAATGTCCTTCATATAGTGACAAACCT...GCAAATGGTGGGGGCAGCAGAGTGAGCTTTACTGCTGGTGTACATGAAGACAAG
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000118282.9
ENSMUST00000232179.2
CDS-3UTR TCA 90 bp GTTACGAACTTGTCTTCATGTACACCAGCAGTAAAGCTCACTCTGCTGCCCCCACCTTGTCTCATATCCTaGAATAATCTGTTGACTGAC +
Preference number: 4 (lower is better)
Translates to: VTNLSSCTPAVKLTLLPPPCLIS*NNLLTD
Trigger: GTCAGTCAACAGATTATTTCAGGATATGAGACAAGG...TGGGGGCAGCAGAGTGAGCTTTACTGCTGGTGTACATGAAGACAAGTTCGTAAC
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000118282.9
ENSMUST00000232179.2
CDS-3UTR TCA 90 bp TCATGTACACCAGCAGTAAAGCTCACTCTGCTGCCCCCACCATTTGCAGTTCAGCTATATTCAGTATCTTaGAGGTTCAGCCATTCCAAA +
Preference number: 4 (lower is better)
Translates to: SCTPAVKLTLLPPPFAVQLYSVS*RFSHSK
Trigger: TTTGGAATGGCTGAACCTTCAAGATACTGAATATAG...CTGAACTGCAAATGGTGGGGGCAGCAGAGTGAGCTTTACTGCTGGTGTACATGA
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000118282.9
ENSMUST00000232179.2
CDS-3UTR TCA 90 bp GTTCTCCCACTGAGCCACACTCCAGCCCTACCTACATTCATTCTAATGAGGGATGACACATCTGTGAAATaGGAAGACCTTTTGTTGATG +
Preference number: 4 (lower is better)
Translates to: VLPLSHTPALPTFILMRDDTSVK*EDLLLM
Trigger: CATCAACAAAAGGTCTTCTCATTTCACAGATGTGTC...ATCCCTCATTAGAATGAATGTAGGTAGGGCTGGAGTGTGGCTCAGTGGGAGAAC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000118282.9
CDS-3UTR TCA 90 bp AGTTACGAACTTGTCTTCATGTACACCAGCAGTAAAGCTCACTCTGCTGCCCCCAGAAGATCTAGCATCTaGTCTTTATGTTGCTCCAGT +
Preference number: 4 (lower is better)
Translates to: SYELVFMYTSSKAHSAAPRRSSI*SLCCSS
Trigger: ACTGGAGCAACATAAAGATCAGATGCTAGATCTTCT...GGGGGCAGCAGAGTGAGCTTTACTGCTGGTGTACATGAAGACAAGTTCGTAACT
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000118282.9
ENSMUST00000232179.2
CDS-3UTR TCA 90 bp AGTTACGAACTTGTCTTCATGTACACCAGCAGTAAAGCTCACTCTGCTGCCCCCTGTGCTTTTCTTATCTaGATAGATCTCTGCGTAGAG +
Preference number: 4 (lower is better)
Translates to: SYELVFMYTSSKAHSAAPCAFLI*IDLCVE
Trigger: CTCTACGCAGAGATCTATTCAGATAAGAAAAGCACA...GGGGGCAGCAGAGTGAGCTTTACTGCTGGTGTACATGAAGACAAGTTCGTAACT
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000118282.9
ENSMUST00000232179.2
CDS-3UTR TCA 90 bp CTTGTCTTCATGTACACCAGCAGTAAAGCTCACTCTGCTGCCCCCACCATTTGCGTGTATCTGTTGGTCTaGATTTTATGTTCCCTTAGA +
Preference number: 4 (lower is better)
Translates to: LVFMYTSSKAHSAAPTICVYLLV*ILCSLR
Trigger: TCTAAGGGAACATAAAATTCAGACCAACAGATACAC...GCAAATGGTGGGGGCAGCAGAGTGAGCTTTACTGCTGGTGTACATGAAGACAAG
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000118282.9
ENSMUST00000232179.2
CDS-3UTR TCA 90 bp TCATGTACACCAGCAGTAAAGCTCACTCTGCTGCCCCCACCATTTGCAGTTCAGGTGTATCTGTTGGTCTaGATTTTATGTTCCCTTAGA +
Preference number: 4 (lower is better)
Translates to: SCTPAVKLTLLPPPFAVQVYLLV*ILCSLR
Trigger: TCTAAGGGAACATAAAATTCAGACCAACAGATACAC...CTGAACTGCAAATGGTGGGGGCAGCAGAGTGAGCTTTACTGCTGGTGTACATGA
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000118282.9
ENSMUST00000232179.2
CDS-3UTR TCA 90 bp AGTTACGAACTTGTCTTCATGTACACCAGCAGTAAAGCTCACTCTGCTGCCCCCCGATCCTCATCAAGGTaGGAGTTTTCTTTAGATGTA +
Preference number: 4 (lower is better)
Translates to: SYELVFMYTSSKAHSAAPRSSSR*EFSLDV
Trigger: TACATCTAAAGAAAACTCTCACCTTGATGAGGATCG...GGGGGCAGCAGAGTGAGCTTTACTGCTGGTGTACATGAAGACAAGTTCGTAACT
46% GC, longest homopolymer 6 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000118282.9
ENSMUST00000232179.2
CDS-3UTR GCA 90 bp ACACCAGCAGTAAAGCTCACTCTGCTGCCCCCACCATTTGCAGTTCAGTGTGTAGGGTGCTCTTTTGTTTaGACATTTGATGAAGTATCT +
Preference number: 4 (lower is better)
Translates to: TPAVKLTLLPPPFAVQCVGCSFV*TFDEVS
Trigger: AGATACTTCATCAAATGTGCAAACAAAAGAGCACCC...TACACACTGAACTGCAAATGGTGGGGGCAGCAGAGTGAGCTTTACTGCTGGTGT
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000118282.9
ENSMUST00000232179.2
CDS-3UTR GCA 90 bp GCAGAAGTTACGAACTTGTCTTCATGTACACCAGCAGTAAAGCTCACTCTGCTGCTTTCTCCTGCACATTaGATCAGAGACTTGGCTTTC +
Preference number: 4 (lower is better)
Translates to: AEVTNLSSCTPAVKLTLLLSPAH*IRDLAF
Trigger: GAAAGCCAAGTCTCTGATGCAATGTGCAGGAGAAAG...CAGCAGAGTGAGCTTTACTGCTGGTGTACATGAAGACAAGTTCGTAACTTCTGC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000118282.9
ENSMUST00000232179.2
CDS-3UTR GCA 90 bp TCATGTACACCAGCAGTAAAGCTCACTCTGCTGCCCCCACCATTTGCAGTTCAGCTTGCTTGGGAGGAATaGTTAAAACAACTAGTGAAA +
Preference number: 4 (lower is better)
Translates to: SCTPAVKLTLLPPPFAVQLAWEE*LKQLVK
Trigger: TTTCACTAGTTGTTTTAAGCATTCCTCCCAAGCAAG...CTGAACTGCAAATGGTGGGGGCAGCAGAGTGAGCTTTACTGCTGGTGTACATGA
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000118282.9
ENSMUST00000232179.2
CDS-3UTR GCA 90 bp CACACACACACACAGTCTGGAAAACATGCTTTAATTAAAGGTTGTTTTAGAGCAGGGTGGAGGAGGAGATaGTGGTCTCCAGGTCGTAAG +
Preference number: 4 (lower is better)
Translates to: HTHTQSGKHALIKGCFRAGWRRR*WSPGRK
Trigger: CTTACGACCTGGAGACCAGCATCTCCTCCTCCACCC...TGCTCTAAAACAACCTTTAATTAAAGCATGTTTTCCAGACTGTGTGTGTGTGTG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000118282.9
ENSMUST00000232179.2
CDS-3UTR GCA 90 bp ACACCAGCAGTAAAGCTCACTCTGCTGCCCCCACCATTTGCAGTTCAGTGTGTACTGTTTCTTAGACACTaGAGAGCATTATACAACGAT +
Preference number: 4 (lower is better)
Translates to: TPAVKLTLLPPPFAVQCVLFLRH*RALYND
Trigger: ATCGTTGTATAATGCTCTGCAGTGTCTAAGAAACAG...TACACACTGAACTGCAAATGGTGGGGGCAGCAGAGTGAGCTTTACTGCTGGTGT
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000118282.9
ENSMUST00000232179.2
CDS-3UTR GCA 90 bp ACACCAGCAGTAAAGCTCACTCTGCTGCCCCCACCATTTGCAGTTCAGTGTGTACCAAGAATTTTTCCATaGAGAAGTAACGGAAAACTG +
Preference number: 4 (lower is better)
Translates to: TPAVKLTLLPPPFAVQCVPRIFP*RSNGKL
Trigger: CAGTTTTCCGTTACTTCTGCATGGAAAAATTCTTGG...TACACACTGAACTGCAAATGGTGGGGGCAGCAGAGTGAGCTTTACTGCTGGTGT
46% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 2 transcripts:
ENSMUST00000118282.9
ENSMUST00000232179.2
CDS-3UTR CCA 90 bp CACACACACACACAGTCTGGAAAACATGCTTTAATTAAAGGTTGTTTTAGAGCATTCCTGACTGGCGGGTaGAGGAGGAGATGCTGGTCT +
Preference number: 4 (lower is better)
Translates to: HTHTQSGKHALIKGCFRAFLTGG*RRRCWS
Trigger: AGACCAGCATCTCCTCCTCCACCCGCCAGTCAGGAA...TGCTCTAAAACAACCTTTAATTAAAGCATGTTTTCCAGACTGTGTGTGTGTGTG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000118282.9
ENSMUST00000232179.2
CDS-3UTR CCA 90 bp CTTGTCTTCATGTACACCAGCAGTAAAGCTCACTCTGCTGCCCCCACCATTTGCCCTTCTTGTTGTCTCTaGTTTGCTCAAAAATTCATC +
Preference number: 4 (lower is better)
Translates to: LVFMYTSSKAHSAAPTICPSCCL*FAQKFI
Trigger: GATGAATTTTTGAGCAAACCAGAGACAACAAGAAGG...GCAAATGGTGGGGGCAGCAGAGTGAGCTTTACTGCTGGTGTACATGAAGACAAG
46% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000118282.9
ENSMUST00000232179.2
CDS-3UTR CCA 90 bp AGTTACGAACTTGTCTTCATGTACACCAGCAGTAAAGCTCACTCTGCTGCCCCCAGTTTAGTGATTGGCTaGTTGGCTGGAATATTGATG +
Preference number: 4 (lower is better)
Translates to: SYELVFMYTSSKAHSAAPSLVIG*LAGILM
Trigger: CATCAATATTCCAGCCAACCAGCCAATCACTAAACT...GGGGGCAGCAGAGTGAGCTTTACTGCTGGTGTACATGAAGACAAGTTCGTAACT
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000118282.9
ENSMUST00000232179.2
CDS-3UTR CCA 90 bp GCAGAAGTTACGAACTTGTCTTCATGTACACCAGCAGTAAAGCTCACTCTGCTGAGTGTATTGCACATCTaGAAGACCTGCTGCATGACA +
Preference number: 4 (lower is better)
Translates to: AEVTNLSSCTPAVKLTLLSVLHI*KTCCMT
Trigger: TGTCATGCAGCAGGTCTTCCAGATGTGCAATACACT...CAGCAGAGTGAGCTTTACTGCTGGTGTACATGAAGACAAGTTCGTAACTTCTGC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000118282.9
ENSMUST00000232179.2
CDS-3UTR CCA 90 bp TGTTCTCCCACTGAGCCACACTCCAGCCCTACCTACATTCATTCTAATGAGGGACTCAAACCAAACAGCTaGGTCCAAGAATTTTTCCAT +
Preference number: 4 (lower is better)
Translates to: CSPTEPHSSPTYIHSNEGLKPNS*VQEFFH
Trigger: ATGGAAAAATTCTTGGACCCAGCTGTTTGGTTTGAG...TCCCTCATTAGAATGAATGTAGGTAGGGCTGGAGTGTGGCTCAGTGGGAGAACA
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000118282.9
CDS-3UTR TCA 90 bp GTTACGAACTTGTCTTCATGTACACCAGCAGTAAAGCTCACTCTGCTGCCCCCAACTTCTGTAAAAACCTaGAAACAGCATCCCAATTCA +
Preference number: 4 (lower is better)
Translates to: VTNLSSCTPAVKLTLLPPTSVKT*KQHPNS
Trigger: TGAATTGGGATGCTGTTTTCAGGTTTTTACAGAAGT...TGGGGGCAGCAGAGTGAGCTTTACTGCTGGTGTACATGAAGACAAGTTCGTAAC
44% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000118282.9
ENSMUST00000232179.2
CDS-3UTR TCA 90 bp GCAGAAGTTACGAACTTGTCTTCATGTACACCAGCAGTAAAGCTCACTCTGCTGTCTATTAATGTCCTGTaGTGGCTTGAGATACAGCCT +
Preference number: 4 (lower is better)
Translates to: AEVTNLSSCTPAVKLTLLSINVL*WLEIQP
Trigger: AGGCTGTATCTCAAGCCATCACAGGACATTAATAGA...CAGCAGAGTGAGCTTTACTGCTGGTGTACATGAAGACAAGTTCGTAACTTCTGC
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000118282.9
ENSMUST00000232179.2
CDS-3UTR TCA 90 bp GCAGAAGTTACGAACTTGTCTTCATGTACACCAGCAGTAAAGCTCACTCTGCTGCCTCTGGTGACAGCATaGATTATTCTAGCCACTAAA +
Preference number: 4 (lower is better)
Translates to: AEVTNLSSCTPAVKLTLLPLVTA*IILATK
Trigger: TTTAGTGGCTAGAATAATTCATGCTGTCACCAGAGG...CAGCAGAGTGAGCTTTACTGCTGGTGTACATGAAGACAAGTTCGTAACTTCTGC
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000118282.9
ENSMUST00000232179.2
CDS-3UTR TCA 90 bp AGTTACGAACTTGTCTTCATGTACACCAGCAGTAAAGCTCACTCTGCTGCCCCCCAATCAGATTTTCCTTaGCAGCAATATTACGAGATC +
Preference number: 4 (lower is better)
Translates to: SYELVFMYTSSKAHSAAPQSDFP*QQYYEI
Trigger: GATCTCGTAATATTGCTGTCAAGGAAAATCTGATTG...GGGGGCAGCAGAGTGAGCTTTACTGCTGGTGTACATGAAGACAAGTTCGTAACT
44% GC, longest homopolymer 6 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000118282.9
ENSMUST00000232179.2
CDS-3UTR TCA 90 bp AGTTACGAACTTGTCTTCATGTACACCAGCAGTAAAGCTCACTCTGCTGCCCCCCTTCATTGCAGCTTTTaGGTTTTTCATAGTGAGACT +
Preference number: 4 (lower is better)
Translates to: SYELVFMYTSSKAHSAAPLHCSF*VFHSET
Trigger: AGTCTCACTATGAAAAACTCAAAAGCTGCAATGAAG...GGGGGCAGCAGAGTGAGCTTTACTGCTGGTGTACATGAAGACAAGTTCGTAACT
44% GC, longest homopolymer 6 nt, total homopolymer stretches 15 nt.
Matches the following 2 transcripts:
ENSMUST00000118282.9
ENSMUST00000232179.2
CDS-3UTR TCA 90 bp GTTACGAACTTGTCTTCATGTACACCAGCAGTAAAGCTCACTCTGCTGCCCCCAGTCAGCAAGAAATTGTaGAAAAGCTTCATTTACAGG +
Preference number: 4 (lower is better)
Translates to: VTNLSSCTPAVKLTLLPPVSKKL*KSFIYR
Trigger: CCTGTAAATGAAGCTTTTTCACAATTTCTTGCTGAC...TGGGGGCAGCAGAGTGAGCTTTACTGCTGGTGTACATGAAGACAAGTTCGTAAC
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000118282.9
ENSMUST00000232179.2
CDS-3UTR TCA 90 bp TGTTCTCCCACTGAGCCACACTCCAGCCCTACCTACATTCATTCTAATGAGGGACTATATTCAGTATCTTaGAGGTTCAGCCATTCCAAA +
Preference number: 4 (lower is better)
Translates to: CSPTEPHSSPTYIHSNEGLYSVS*RFSHSK
Trigger: TTTGGAATGGCTGAACCTTCAAGATACTGAATATAG...TCCCTCATTAGAATGAATGTAGGTAGGGCTGGAGTGTGGCTCAGTGGGAGAACA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000118282.9
CDS-3UTR TCA 90 bp ATTCACTTAAGTAATTCCTGTCCAAATATGGTGGGTGAGATGTCATTTCTGAAGGCCATGAGAGGCTCCTaGAAGCTGAAGTCGCTGTCT +
Preference number: 4 (lower is better)
Translates to: IHLSNSCPNMVGEMSFLKAMRGS*KLKSLS
Trigger: AGACAGCGACTTCAGCTTTCAGGAGCCTCTCATGGC...CTTCAGAAATGACATCTCACCCACCATATTTGGACAGGAATTACTTAAGTGAAT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000118282.9
ENSMUST00000232179.2
CDS-3UTR GCA 90 bp TGTTCTCCCACTGAGCCACACTCCAGCCCTACCTACATTCATTCTAATGAGGGAGGGTGCTCTTTTGTTTaGACATTTGATGAAGTATCT +
Preference number: 4 (lower is better)
Translates to: CSPTEPHSSPTYIHSNEGGCSFV*TFDEVS
Trigger: AGATACTTCATCAAATGTGCAAACAAAAGAGCACCC...TCCCTCATTAGAATGAATGTAGGTAGGGCTGGAGTGTGGCTCAGTGGGAGAACA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000118282.9
CDS-3UTR GCA 90 bp GCAGAAGTTACGAACTTGTCTTCATGTACACCAGCAGTAAAGCTCACTCTGCTGCTAGCTTCACCACAATaGCATCTTGTGGGTTATCTT +
Preference number: 4 (lower is better)
Translates to: AEVTNLSSCTPAVKLTLLLASPQ*HLVGYL
Trigger: AAGATAACCCACAAGATGGCATTGTGGTGAAGCTAG...CAGCAGAGTGAGCTTTACTGCTGGTGTACATGAAGACAAGTTCGTAACTTCTGC
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000118282.9
ENSMUST00000232179.2
CDS-3UTR GCA 90 bp GCAGAAGTTACGAACTTGTCTTCATGTACACCAGCAGTAAAGCTCACTCTGCTGGAATTTCACTGTTTATaGCTCCACTGTCCAGAAAGG +
Preference number: 4 (lower is better)
Translates to: AEVTNLSSCTPAVKLTLLEFHCL*LHCPER
Trigger: CCTTTCTGGACAGTGGAGGCATAAACAGTGAAATTC...CAGCAGAGTGAGCTTTACTGCTGGTGTACATGAAGACAAGTTCGTAACTTCTGC
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000118282.9
ENSMUST00000232179.2
CDS-3UTR GCA 90 bp GTTCTCCCACTGAGCCACACTCCAGCCCTACCTACATTCATTCTAATGAGGGATCTGTTTCTTAGACACTaGAGAGCATTATACAACGAT +
Preference number: 4 (lower is better)
Translates to: VLPLSHTPALPTFILMRDLFLRH*RALYND
Trigger: ATCGTTGTATAATGCTCTGCAGTGTCTAAGAAACAG...ATCCCTCATTAGAATGAATGTAGGTAGGGCTGGAGTGTGGCTCAGTGGGAGAAC
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000118282.9
CDS-3UTR GCA 90 bp TGTTCTCCCACTGAGCCACACTCCAGCCCTACCTACATTCATTCTAATGAGGGACCAAGAATTTTTCCATaGAGAAGTAACGGAAAACTG +
Preference number: 4 (lower is better)
Translates to: CSPTEPHSSPTYIHSNEGPRIFP*RSNGKL
Trigger: CAGTTTTCCGTTACTTCTGCATGGAAAAATTCTTGG...TCCCTCATTAGAATGAATGTAGGTAGGGCTGGAGTGTGGCTCAGTGGGAGAACA
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000118282.9
CDS-3UTR CCA 90 bp GTTACGAACTTGTCTTCATGTACACCAGCAGTAAAGCTCACTCTGCTGCCCCCAATTGCATCAGAGACTTaGCTTTCTGGAATAATTCTG +
Preference number: 4 (lower is better)
Translates to: VTNLSSCTPAVKLTLLPPIASET*LSGIIL
Trigger: CAGAATTATTCCAGAAAGCCAAGTCTCTGATGCAAT...TGGGGGCAGCAGAGTGAGCTTTACTGCTGGTGTACATGAAGACAAGTTCGTAAC
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000118282.9
ENSMUST00000232179.2
CDS-3UTR CCA 90 bp AGTTACGAACTTGTCTTCATGTACACCAGCAGTAAAGCTCACTCTGCTGCCCCCATTGCATCAGAGACTTaGCTTTCTGGAATAATTCTG +
Preference number: 4 (lower is better)
Translates to: SYELVFMYTSSKAHSAAPIASET*LSGIIL
Trigger: CAGAATTATTCCAGAAAGCCAAGTCTCTGATGCAAT...GGGGGCAGCAGAGTGAGCTTTACTGCTGGTGTACATGAAGACAAGTTCGTAACT
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000118282.9
ENSMUST00000232179.2
CDS-3UTR CCA 90 bp TCATGTACACCAGCAGTAAAGCTCACTCTGCTGCCCCCACCATTTGCAGTTCAGTTCACCTCATCAAAATaGCTTCTGATTACCAAATGT +
Preference number: 4 (lower is better)
Translates to: SCTPAVKLTLLPPPFAVQFTSSK*LLITKC
Trigger: ACATTTGGTAATCAGAAGCCATTTTGATGAGGTGAA...CTGAACTGCAAATGGTGGGGGCAGCAGAGTGAGCTTTACTGCTGGTGTACATGA
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000118282.9
ENSMUST00000232179.2
CDS-3UTR CCA 90 bp AGTTACGAACTTGTCTTCATGTACACCAGCAGTAAAGCTCACTCTGCTGCCCCCCTCCACCACAATCTCTaGCAAATTACTAATGAATAC +
Preference number: 4 (lower is better)
Translates to: SYELVFMYTSSKAHSAAPLHHNL*QITNEY
Trigger: GTATTCATTAGTAATTTGCCAGAGATTGTGGTGGAG...GGGGGCAGCAGAGTGAGCTTTACTGCTGGTGTACATGAAGACAAGTTCGTAACT
44% GC, longest homopolymer 6 nt, total homopolymer stretches 6 nt.
Matches the following 2 transcripts:
ENSMUST00000118282.9
ENSMUST00000232179.2
CDS-3UTR CCA 90 bp AGTTACGAACTTGTCTTCATGTACACCAGCAGTAAAGCTCACTCTGCTGCCCCCCTGCTTGTTCACAAATaGCCAGAAGTATTTTCTGAT +
Preference number: 4 (lower is better)
Translates to: SYELVFMYTSSKAHSAAPLLVHK*PEVFSD
Trigger: ATCAGAAAATACTTCTGGCCATTTGTGAACAAGCAG...GGGGGCAGCAGAGTGAGCTTTACTGCTGGTGTACATGAAGACAAGTTCGTAACT
44% GC, longest homopolymer 6 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000118282.9
ENSMUST00000232179.2
CDS-3UTR CCA 90 bp GTTACGAACTTGTCTTCATGTACACCAGCAGTAAAGCTCACTCTGCTGCCCCCACCTTCTTGTTGTCTCTaGTTTGCTCAAAAATTCATC +
Preference number: 4 (lower is better)
Translates to: VTNLSSCTPAVKLTLLPPPSCCL*FAQKFI
Trigger: GATGAATTTTTGAGCAAACCAGAGACAACAAGAAGG...TGGGGGCAGCAGAGTGAGCTTTACTGCTGGTGTACATGAAGACAAGTTCGTAAC
44% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000118282.9
ENSMUST00000232179.2
CDS-3UTR CCA 90 bp GCAGAAGTTACGAACTTGTCTTCATGTACACCAGCAGTAAAGCTCACTCTGCTGGATTGGCTGGTTGGCTaGAATATTGATGCCTTTTCT +
Preference number: 4 (lower is better)
Translates to: AEVTNLSSCTPAVKLTLLDWLVG*NIDAFS
Trigger: AGAAAAGGCATCAATATTCCAGCCAACCAGCCAATC...CAGCAGAGTGAGCTTTACTGCTGGTGTACATGAAGACAAGTTCGTAACTTCTGC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000118282.9
ENSMUST00000232179.2
CDS-3UTR CCA 90 bp CTTGTCTTCATGTACACCAGCAGTAAAGCTCACTCTGCTGCCCCCACCATTTGCACTTTGTTGAAACTCTaGTCAGTATCACTAAGACTT +
Preference number: 4 (lower is better)
Translates to: LVFMYTSSKAHSAAPTICTLLKL*SVSLRL
Trigger: AAGTCTTAGTGATACTGACCAGAGTTTCAACAAAGT...GCAAATGGTGGGGGCAGCAGAGTGAGCTTTACTGCTGGTGTACATGAAGACAAG
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000118282.9
ENSMUST00000232179.2
CDS-3UTR TCA 90 bp GCAGAAGTTACGAACTTGTCTTCATGTACACCAGCAGTAAAGCTCACTCTGCTGACCTTTTTCACAAGATaGGGTTCTAGTCTGTTTTCC +
Preference number: 4 (lower is better)
Translates to: AEVTNLSSCTPAVKLTLLTFFTR*GSSLFS
Trigger: GGAAAACAGACTAGAACCTCATCTTGTGAAAAAGGT...CAGCAGAGTGAGCTTTACTGCTGGTGTACATGAAGACAAGTTCGTAACTTCTGC
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000118282.9
ENSMUST00000232179.2
CDS-3UTR TCA 90 bp TTAAGTAATTCCTGTCCAAATATGGTGGGTGAGATGTCATTTCTGAAGTTCGAGAGCGCTCTCTGTCTGTaGCTGACCTTGAGAAAAGCT +
Preference number: 4 (lower is better)
Translates to: LSNSCPNMVGEMSFLKFESALCL*LTLRKA
Trigger: AGCTTTTCTCAAGGTCAGTCACAGACAGAGAGCGCT...CTCGAACTTCAGAAATGACATCTCACCCACCATATTTGGACAGGAATTACTTAA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000118282.9
ENSMUST00000232179.2
CDS-3UTR TCA 90 bp ATTCACTTAAGTAATTCCTGTCCAAATATGGTGGGTGAGATGTCATTTCTGAAGTTTCACAGCACCTTCTaGAGACACCTTCCACACCGG +
Preference number: 4 (lower is better)
Translates to: IHLSNSCPNMVGEMSFLKFHSTF*RHLPHR
Trigger: CCGGTGTGGAAGGTGTCTTCAGAAGGTGCTGTGAAA...CTTCAGAAATGACATCTCACCCACCATATTTGGACAGGAATTACTTAAGTGAAT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000118282.9
ENSMUST00000232179.2
CDS-3UTR GCA 90 bp TTAAGTAATTCCTGTCCAAATATGGTGGGTGAGATGTCATTTCTGAAGTTCGAGTCTGTAGCTCTGTCATaGTCTAACTGCCGGCAGCAA +
Preference number: 4 (lower is better)
Translates to: LSNSCPNMVGEMSFLKFESVALS*SNCRQQ
Trigger: TTGCTGCCGGCAGTTAGAGCATGACAGAGCTACAGA...CTCGAACTTCAGAAATGACATCTCACCCACCATATTTGGACAGGAATTACTTAA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000118282.9
ENSMUST00000232179.2
CDS-3UTR GCA 90 bp AGTTACGAACTTGTCTTCATGTACACCAGCAGTAAAGCTCACTCTGCTGCCCCCTGTTCCCATTTTTATTaGATCTGGAACTACACAGAT +
Preference number: 4 (lower is better)
Translates to: SYELVFMYTSSKAHSAAPCSHFY*IWNYTD
Trigger: ATCTGTGTAGTTCCAGATGCAATAAAAATGGGAACA...GGGGGCAGCAGAGTGAGCTTTACTGCTGGTGTACATGAAGACAAGTTCGTAACT
43% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000118282.9
ENSMUST00000232179.2
CDS-3UTR GCA 90 bp TGTTCTCCCACTGAGCCACACTCCAGCCCTACCTACATTCATTCTAATGAGGGACAACTTGTACACAGATaGATCACATTTCTCAATGAA +
Preference number: 4 (lower is better)
Translates to: CSPTEPHSSPTYIHSNEGQLVHR*ITFLNE
Trigger: TTCATTGAGAAATGTGATGCATCTGTGTACAAGTTG...TCCCTCATTAGAATGAATGTAGGTAGGGCTGGAGTGTGGCTCAGTGGGAGAACA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000118282.9
CDS-3UTR GCA 90 bp GCAGAAGTTACGAACTTGTCTTCATGTACACCAGCAGTAAAGCTCACTCTGCTGATTATTTGTCTCAGCTaGTTGTTCACAAATGGCCAG +
Preference number: 4 (lower is better)
Translates to: AEVTNLSSCTPAVKLTLLIICLS*LFTNGQ
Trigger: CTGGCCATTTGTGAACAAGCAGCTGAGACAAATAAT...CAGCAGAGTGAGCTTTACTGCTGGTGTACATGAAGACAAGTTCGTAACTTCTGC
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000118282.9
ENSMUST00000232179.2
CDS-3UTR GCA 90 bp TTAAGTAATTCCTGTCCAAATATGGTGGGTGAGATGTCATTTCTGAAGTTCGAGAGCTGGGAGTGCTTCTaGCACTTCCAGTATGCTTCA +
Preference number: 4 (lower is better)
Translates to: LSNSCPNMVGEMSFLKFESWECF*HFQYAS
Trigger: TGAAGCATACTGGAAGTGGCAGAAGCACTCCCAGCT...CTCGAACTTCAGAAATGACATCTCACCCACCATATTTGGACAGGAATTACTTAA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000118282.9
ENSMUST00000232179.2
CDS-3UTR GCA 90 bp ATTCACTTAAGTAATTCCTGTCCAAATATGGTGGGTGAGATGTCATTTCTGAAGTACACAGGAAGCGCTTaGGATCCTCTCTCAGTGCAC +
Preference number: 4 (lower is better)
Translates to: IHLSNSCPNMVGEMSFLKYTGSA*DPLSVH
Trigger: GTGCACTGAGAGAGGATCGCAAGCGCTTCCTGTGTA...CTTCAGAAATGACATCTCACCCACCATATTTGGACAGGAATTACTTAAGTGAAT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000118282.9
ENSMUST00000232179.2
CDS-3UTR GCA 90 bp TTAAGTAATTCCTGTCCAAATATGGTGGGTGAGATGTCATTTCTGAAGTTCGAGATCTGGAAGACCTGCTaGATGACAGCATCTTGCCTC +
Preference number: 4 (lower is better)
Translates to: LSNSCPNMVGEMSFLKFEIWKTC*MTASCL
Trigger: GAGGCAAGATGCTGTCATGCAGCAGGTCTTCCAGAT...CTCGAACTTCAGAAATGACATCTCACCCACCATATTTGGACAGGAATTACTTAA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000118282.9
ENSMUST00000232179.2
CDS-3UTR CCA 90 bp GTTACGAACTTGTCTTCATGTACACCAGCAGTAAAGCTCACTCTGCTGCCCCCATTCACCTCATCAAAATaGCTTCTGATTACCAAATGT +
Preference number: 4 (lower is better)
Translates to: VTNLSSCTPAVKLTLLPPFTSSK*LLITKC
Trigger: ACATTTGGTAATCAGAAGCCATTTTGATGAGGTGAA...TGGGGGCAGCAGAGTGAGCTTTACTGCTGGTGTACATGAAGACAAGTTCGTAAC
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000118282.9
ENSMUST00000232179.2
CDS-3UTR CCA 90 bp AGTTACGAACTTGTCTTCATGTACACCAGCAGTAAAGCTCACTCTGCTGCCCCCTCCTTAAAAATAACATaGTCAGGAAAGGGATCCAAA +
Preference number: 4 (lower is better)
Translates to: SYELVFMYTSSKAHSAAPSLKIT*SGKGSK
Trigger: TTTGGATCCCTTTCCTGACCATGTTATTTTTAAGGA...GGGGGCAGCAGAGTGAGCTTTACTGCTGGTGTACATGAAGACAAGTTCGTAACT
43% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000118282.9
ENSMUST00000232179.2
CDS-3UTR TCA 90 bp GCAGAAGTTACGAACTTGTCTTCATGTACACCAGCAGTAAAGCTCACTCTGCTGGTCAGCAAGAAATTGTaGAAAAGCTTCATTTACAGG +
Preference number: 4 (lower is better)
Translates to: AEVTNLSSCTPAVKLTLLVSKKL*KSFIYR
Trigger: CCTGTAAATGAAGCTTTTTCACAATTTCTTGCTGAC...CAGCAGAGTGAGCTTTACTGCTGGTGTACATGAAGACAAGTTCGTAACTTCTGC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000118282.9
ENSMUST00000232179.2
CDS-3UTR TCA 90 bp CACACACACACACAGTCTGGAAAACATGCTTTAATTAAAGGTTGTTTTAGAGCATGCCTGAATGACATGTaGGGGGAAATATGGCGGGTT +
Preference number: 4 (lower is better)
Translates to: HTHTQSGKHALIKGCFRACLNDM*GEIWRV
Trigger: AACCCGCCATATTTCCCCTCACATGTCATTCAGGCA...TGCTCTAAAACAACCTTTAATTAAAGCATGTTTTCCAGACTGTGTGTGTGTGTG
42% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000118282.9
ENSMUST00000232179.2
CDS-3UTR TCA 90 bp TTAAGTAATTCCTGTCCAAATATGGTGGGTGAGATGTCATTTCTGAAGTTCGAGGTGCCAACGATAACGTaGAGATGGCTTTCTAGAGCA +
Preference number: 4 (lower is better)
Translates to: LSNSCPNMVGEMSFLKFEVPTIT*RWLSRA
Trigger: TGCTCTAGAAAGCCATCTTCACGTTATCGTTGGCAC...CTCGAACTTCAGAAATGACATCTCACCCACCATATTTGGACAGGAATTACTTAA
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000118282.9
ENSMUST00000232179.2
CDS-3UTR TCA 90 bp CACACACACACACAGTCTGGAAAACATGCTTTAATTAAAGGTTGTTTTAGAGCAGGTTGGCTGGAATATTaGTGCCTTTTCTCTGAGCCC +
Preference number: 4 (lower is better)
Translates to: HTHTQSGKHALIKGCFRAGWLEY*CLFSEP
Trigger: GGGCTCAGAGAAAAGGCATCAATATTCCAGCCAACC...TGCTCTAAAACAACCTTTAATTAAAGCATGTTTTCCAGACTGTGTGTGTGTGTG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000118282.9
ENSMUST00000232179.2
CDS-3UTR GCA 90 bp CACACACACACACAGTCTGGAAAACATGCTTTAATTAAAGGTTGTTTTAGAGCATCTGTAGCTCTGTCATaGTCTAACTGCCGGCAGCAA +
Preference number: 4 (lower is better)
Translates to: HTHTQSGKHALIKGCFRASVALS*SNCRQQ
Trigger: TTGCTGCCGGCAGTTAGAGCATGACAGAGCTACAGA...TGCTCTAAAACAACCTTTAATTAAAGCATGTTTTCCAGACTGTGTGTGTGTGTG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000118282.9
ENSMUST00000232179.2
CDS-3UTR GCA 90 bp TTAAGTAATTCCTGTCCAAATATGGTGGGTGAGATGTCATTTCTGAAGTTCGAGGTAACACATATGGGATaGGTTCTCCACGTCGCTGTT +
Preference number: 4 (lower is better)
Translates to: LSNSCPNMVGEMSFLKFEVTHMG*VLHVAV
Trigger: AACAGCGACGTGGAGAACGCATCCCATATGTGTTAC...CTCGAACTTCAGAAATGACATCTCACCCACCATATTTGGACAGGAATTACTTAA
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000118282.9
ENSMUST00000232179.2
CDS-3UTR GCA 90 bp GCAGAAGTTACGAACTTGTCTTCATGTACACCAGCAGTAAAGCTCACTCTGCTGTTTTCCTTTGTCAAATaGCAAAATGCTCCCATCACT +
Preference number: 4 (lower is better)
Translates to: AEVTNLSSCTPAVKLTLLFSFVK*QNAPIT
Trigger: AGTGATGGGAGCATTTTGGCATTTGACAAAGGAAAA...CAGCAGAGTGAGCTTTACTGCTGGTGTACATGAAGACAAGTTCGTAACTTCTGC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000118282.9
ENSMUST00000232179.2
CDS-3UTR GCA 90 bp TTAAGTAATTCCTGTCCAAATATGGTGGGTGAGATGTCATTTCTGAAGTTCGAGAATGTCCTTAGAGCATaGTCCTTGAGAGCGCTCCAT +
Preference number: 4 (lower is better)
Translates to: LSNSCPNMVGEMSFLKFENVLRA*SLRALH
Trigger: ATGGAGCGCTCTCAAGGAGCATGCTCTAAGGACATT...CTCGAACTTCAGAAATGACATCTCACCCACCATATTTGGACAGGAATTACTTAA
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000118282.9
ENSMUST00000232179.2
CDS-3UTR CCA 90 bp CACACACACACACAGTCTGGAAAACATGCTTTAATTAAAGGTTGTTTTAGAGCACTTCTTCAGGAGCTCTaGCTCCTTGTGGATGATGGA +
Preference number: 4 (lower is better)
Translates to: HTHTQSGKHALIKGCFRALLQEL*LLVDDG
Trigger: TCCATCATCCACAAGGAGCCAGAGCTCCTGAAGAAG...TGCTCTAAAACAACCTTTAATTAAAGCATGTTTTCCAGACTGTGTGTGTGTGTG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000118282.9
ENSMUST00000232179.2
CDS-3UTR CCA 90 bp CACACACACACACAGTCTGGAAAACATGCTTTAATTAAAGGTTGTTTTAGAGCACTGCTTTTCACAGACTaGGCTACAGTGCAAGACCAC +
Preference number: 4 (lower is better)
Translates to: HTHTQSGKHALIKGCFRALLFTD*ATVQDH
Trigger: GTGGTCTTGCACTGTAGCCCAGTCTGTGAAAAGCAG...TGCTCTAAAACAACCTTTAATTAAAGCATGTTTTCCAGACTGTGTGTGTGTGTG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000118282.9
ENSMUST00000232179.2
CDS-3UTR CCA 90 bp TTAAGTAATTCCTGTCCAAATATGGTGGGTGAGATGTCATTTCTGAAGTTCGAGTATGCTGGACAGCTATaGTGGAGAAATCCAGAGGAC +
Preference number: 4 (lower is better)
Translates to: LSNSCPNMVGEMSFLKFEYAGQL*WRNPED
Trigger: GTCCTCTGGATTTCTCCACCATAGCTGTCCAGCATA...CTCGAACTTCAGAAATGACATCTCACCCACCATATTTGGACAGGAATTACTTAA
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000118282.9
ENSMUST00000232179.2
CDS-3UTR CCA 90 bp CACACACACACACAGTCTGGAAAACATGCTTTAATTAAAGGTTGTTTTAGAGCATGGAGGAGGAGATGCTaGTCTCCAGGTCGTAAGTTA +
Preference number: 4 (lower is better)
Translates to: HTHTQSGKHALIKGCFRAWRRRC*SPGRKL
Trigger: TAACTTACGACCTGGAGACCAGCATCTCCTCCTCCA...TGCTCTAAAACAACCTTTAATTAAAGCATGTTTTCCAGACTGTGTGTGTGTGTG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000118282.9
ENSMUST00000232179.2
CDS-3UTR CCA 90 bp TTAAGTAATTCCTGTCCAAATATGGTGGGTGAGATGTCATTTCTGAAGTTCGAGGAACTGTTTCTGGAGTaGGAAGGATCTTCCCCTGTT +
Preference number: 4 (lower is better)
Translates to: LSNSCPNMVGEMSFLKFEELFLE*EGSSPV
Trigger: AACAGGGGAAGATCCTTCCCACTCCAGAAACAGTTC...CTCGAACTTCAGAAATGACATCTCACCCACCATATTTGGACAGGAATTACTTAA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000118282.9
ENSMUST00000232179.2
CDS-3UTR CCA 90 bp ATTCACTTAAGTAATTCCTGTCCAAATATGGTGGGTGAGATGTCATTTCTGAAGGGATCCATGGCCTGCTaGATAAGCAAGTTCACCTGT +
Preference number: 4 (lower is better)
Translates to: IHLSNSCPNMVGEMSFLKGSMAC*ISKFTC
Trigger: ACAGGTGAACTTGCTTATCCAGCAGGCCATGGATCC...CTTCAGAAATGACATCTCACCCACCATATTTGGACAGGAATTACTTAAGTGAAT
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000118282.9
ENSMUST00000232179.2
CDS-3UTR CCA 90 bp CACACACACACACAGTCTGGAAAACATGCTTTAATTAAAGGTTGTTTTAGAGCAGGATCCATGGCCTGCTaGATAAGCAAGTTCACCTGT +
Preference number: 4 (lower is better)
Translates to: HTHTQSGKHALIKGCFRAGSMAC*ISKFTC
Trigger: ACAGGTGAACTTGCTTATCCAGCAGGCCATGGATCC...TGCTCTAAAACAACCTTTAATTAAAGCATGTTTTCCAGACTGTGTGTGTGTGTG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000118282.9
ENSMUST00000232179.2
CDS-3UTR TCA 90 bp TTAAGTAATTCCTGTCCAAATATGGTGGGTGAGATGTCATTTCTGAAGTTCGAGAGCAGATCAGGGTTCTaGGAATCACATAACAGTCCT +
Preference number: 4 (lower is better)
Translates to: LSNSCPNMVGEMSFLKFESRSGF*ESHNSP
Trigger: AGGACTGTTATGTGATTCTCAGAACCCTGATCTGCT...CTCGAACTTCAGAAATGACATCTCACCCACCATATTTGGACAGGAATTACTTAA
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000118282.9
ENSMUST00000232179.2
CDS-3UTR TCA 90 bp CACACACACACACAGTCTGGAAAACATGCTTTAATTAAAGGTTGTTTTAGAGCAAGCTCCAGTTCTCGCTaGACCTTTACTGTGTATCTG +
Preference number: 4 (lower is better)
Translates to: HTHTQSGKHALIKGCFRASSSSR*TFTVYL
Trigger: CAGATACACAGTAAAGGTTCAGCGAGAACTGGAGCT...TGCTCTAAAACAACCTTTAATTAAAGCATGTTTTCCAGACTGTGTGTGTGTGTG
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000118282.9
ENSMUST00000232179.2
CDS-3UTR GCA 90 bp TTAAGTAATTCCTGTCCAAATATGGTGGGTGAGATGTCATTTCTGAAGTTCGAGCTTTCTCCTGCACATTaGATCAGAGACTTGGCTTTC +
Preference number: 4 (lower is better)
Translates to: LSNSCPNMVGEMSFLKFELSPAH*IRDLAF
Trigger: GAAAGCCAAGTCTCTGATGCAATGTGCAGGAGAAAG...CTCGAACTTCAGAAATGACATCTCACCCACCATATTTGGACAGGAATTACTTAA
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000118282.9
ENSMUST00000232179.2
CDS-3UTR GCA 90 bp ATTCACTTAAGTAATTCCTGTCCAAATATGGTGGGTGAGATGTCATTTCTGAAGAATGTCCTTAGAGCATaGTCCTTGAGAGCGCTCCAT +
Preference number: 4 (lower is better)
Translates to: IHLSNSCPNMVGEMSFLKNVLRA*SLRALH
Trigger: ATGGAGCGCTCTCAAGGAGCATGCTCTAAGGACATT...CTTCAGAAATGACATCTCACCCACCATATTTGGACAGGAATTACTTAAGTGAAT
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000118282.9
ENSMUST00000232179.2
CDS-3UTR CCA 90 bp GCAGAAGTTACGAACTTGTCTTCATGTACACCAGCAGTAAAGCTCACTCTGCTGTCCTTAAAAATAACATaGTCAGGAAAGGGATCCAAA +
Preference number: 4 (lower is better)
Translates to: AEVTNLSSCTPAVKLTLLSLKIT*SGKGSK
Trigger: TTTGGATCCCTTTCCTGACCATGTTATTTTTAAGGA...CAGCAGAGTGAGCTTTACTGCTGGTGTACATGAAGACAAGTTCGTAACTTCTGC
41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000118282.9
ENSMUST00000232179.2
CDS-3UTR CCA 90 bp TTAAGTAATTCCTGTCCAAATATGGTGGGTGAGATGTCATTTCTGAAGTTCGAGTCTCTTTCACCAGTCTaGTTCACTGCCATCTTGGAT +
Preference number: 4 (lower is better)
Translates to: LSNSCPNMVGEMSFLKFESLSPV*FTAILD
Trigger: ATCCAAGATGGCAGTGAACCAGACTGGTGAAAGAGA...CTCGAACTTCAGAAATGACATCTCACCCACCATATTTGGACAGGAATTACTTAA
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000118282.9
ENSMUST00000232179.2
CDS-3UTR CCA 90 bp CACACACACACACAGTCTGGAAAACATGCTTTAATTAAAGGTTGTTTTAGAGCAGCTGAGCGGCTTGCTTaGGAGGAATGCTTAAAACAA +
Preference number: 4 (lower is better)
Translates to: HTHTQSGKHALIKGCFRAAERLA*EECLKQ
Trigger: TTGTTTTAAGCATTCCTCCCAAGCAAGCCGCTCAGC...TGCTCTAAAACAACCTTTAATTAAAGCATGTTTTCCAGACTGTGTGTGTGTGTG
41% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000118282.9
ENSMUST00000232179.2
CDS-3UTR CCA 90 bp TTAAGTAATTCCTGTCCAAATATGGTGGGTGAGATGTCATTTCTGAAGTTCGAGAGTGTATTGCACATCTaGAAGACCTGCTGCATGACA +
Preference number: 4 (lower is better)
Translates to: LSNSCPNMVGEMSFLKFESVLHI*KTCCMT
Trigger: TGTCATGCAGCAGGTCTTCCAGATGTGCAATACACT...CTCGAACTTCAGAAATGACATCTCACCCACCATATTTGGACAGGAATTACTTAA
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000118282.9
ENSMUST00000232179.2
CDS-3UTR CCA 90 bp CACACACACACACAGTCTGGAAAACATGCTTTAATTAAAGGTTGTTTTAGAGCAGAACTGTTTCTGGAGTaGGAAGGATCTTCCCCTGTT +
Preference number: 4 (lower is better)
Translates to: HTHTQSGKHALIKGCFRAELFLE*EGSSPV
Trigger: AACAGGGGAAGATCCTTCCCACTCCAGAAACAGTTC...TGCTCTAAAACAACCTTTAATTAAAGCATGTTTTCCAGACTGTGTGTGTGTGTG
41% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000118282.9
ENSMUST00000232179.2
CDS-3UTR TCA 90 bp TTAAGTAATTCCTGTCCAAATATGGTGGGTGAGATGTCATTTCTGAAGTTCGAGGCCTCAAGCAATGTTTaGAGACACTTTACTAATGCC +
Preference number: 4 (lower is better)
Translates to: LSNSCPNMVGEMSFLKFEASSNV*RHFTNA
Trigger: GGCATTAGTAAAGTGTCTTCAAACATTGCTTGAGGC...CTCGAACTTCAGAAATGACATCTCACCCACCATATTTGGACAGGAATTACTTAA
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000118282.9
ENSMUST00000232179.2
CDS-3UTR GCA 90 bp ATTCACTTAAGTAATTCCTGTCCAAATATGGTGGGTGAGATGTCATTTCTGAAGGCCATCTTGGATAACTaGAACAAGCTGACAACTAGC +
Preference number: 4 (lower is better)
Translates to: IHLSNSCPNMVGEMSFLKAILDN*NKLTTS
Trigger: GCTAGTTGTCAGCTTGTTGCAGTTATCCAAGATGGC...CTTCAGAAATGACATCTCACCCACCATATTTGGACAGGAATTACTTAAGTGAAT
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000118282.9
ENSMUST00000232179.2
CDS-3UTR GCA 90 bp TTAAGTAATTCCTGTCCAAATATGGTGGGTGAGATGTCATTTCTGAAGTTCGAGAGTTCTCCAATTGCCTaGAATCTACTAAGTGTGGGA +
Preference number: 4 (lower is better)
Translates to: LSNSCPNMVGEMSFLKFESSPIA*NLLSVG
Trigger: TCCCACACTTAGTAGATTGCAGGCAATTGGAGAACT...CTCGAACTTCAGAAATGACATCTCACCCACCATATTTGGACAGGAATTACTTAA
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000118282.9
ENSMUST00000232179.2
CDS-3UTR GCA 90 bp ATTCACTTAAGTAATTCCTGTCCAAATATGGTGGGTGAGATGTCATTTCTGAAGTGCCCAGAATACTTGTaGTTCTTCCAAATGCCACTC +
Preference number: 4 (lower is better)
Translates to: IHLSNSCPNMVGEMSFLKCPEYL*FFQMPL
Trigger: GAGTGGCATTTGGAAGAAGCACAAGTATTCTGGGCA...CTTCAGAAATGACATCTCACCCACCATATTTGGACAGGAATTACTTAAGTGAAT
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000118282.9
ENSMUST00000232179.2
CDS-3UTR GCA 90 bp CACACACACACACAGTCTGGAAAACATGCTTTAATTAAAGGTTGTTTTAGAGCATGCCCAGAATACTTGTaGTTCTTCCAAATGCCACTC +
Preference number: 4 (lower is better)
Translates to: HTHTQSGKHALIKGCFRACPEYL*FFQMPL
Trigger: GAGTGGCATTTGGAAGAAGCACAAGTATTCTGGGCA...TGCTCTAAAACAACCTTTAATTAAAGCATGTTTTCCAGACTGTGTGTGTGTGTG
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000118282.9
ENSMUST00000232179.2
CDS-3UTR GCA 90 bp ATTCACTTAAGTAATTCCTGTCCAAATATGGTGGGTGAGATGTCATTTCTGAAGTCTGCAGTAGTGTATTaGACATCTGGAAGACCTGCT +
Preference number: 4 (lower is better)
Translates to: IHLSNSCPNMVGEMSFLKSAVVY*TSGRPA
Trigger: AGCAGGTCTTCCAGATGTGCAATACACTACTGCAGA...CTTCAGAAATGACATCTCACCCACCATATTTGGACAGGAATTACTTAAGTGAAT
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000118282.9
ENSMUST00000232179.2
CDS-3UTR CCA 90 bp ATTCACTTAAGTAATTCCTGTCCAAATATGGTGGGTGAGATGTCATTTCTGAAGGTCTGGAGCTCTGTGTaGTGGCTGATACATTTGATT +
Preference number: 4 (lower is better)
Translates to: IHLSNSCPNMVGEMSFLKVWSSV*WLIHLI
Trigger: AATCAAATGTATCAGCCACCACACAGAGCTCCAGAC...CTTCAGAAATGACATCTCACCCACCATATTTGGACAGGAATTACTTAAGTGAAT
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000118282.9
ENSMUST00000232179.2
CDS-3UTR CCA 90 bp ATTCACTTAAGTAATTCCTGTCCAAATATGGTGGGTGAGATGTCATTTCTGAAGATTACTCTGAAGAATTaGAGGCAGCTCTGTGCTGTC +
Preference number: 4 (lower is better)
Translates to: IHLSNSCPNMVGEMSFLKITLKN*RQLCAV
Trigger: GACAGCACAGAGCTGCCTCCAATTCTTCAGAGTAAT...CTTCAGAAATGACATCTCACCCACCATATTTGGACAGGAATTACTTAAGTGAAT
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000118282.9
ENSMUST00000232179.2
CDS-3UTR CCA 90 bp ATTCACTTAAGTAATTCCTGTCCAAATATGGTGGGTGAGATGTCATTTCTGAAGTTACTTCTGATGGAGTaGATGATTCTGGTTGCAGCC +
Preference number: 4 (lower is better)
Translates to: IHLSNSCPNMVGEMSFLKLLLME*MILVAA
Trigger: GGCTGCAACCAGAATCATCCACTCCATCAGAAGTAA...CTTCAGAAATGACATCTCACCCACCATATTTGGACAGGAATTACTTAAGTGAAT
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000118282.9
ENSMUST00000232179.2
CDS-3UTR CCA 90 bp ATTCACTTAAGTAATTCCTGTCCAAATATGGTGGGTGAGATGTCATTTCTGAAGAAAAGGAACTGTTTCTaGAGTGGGAAGGATCTTCCC +
Preference number: 4 (lower is better)
Translates to: IHLSNSCPNMVGEMSFLKKRNCF*SGKDLP
Trigger: GGGAAGATCCTTCCCACTCCAGAAACAGTTCCTTTT...CTTCAGAAATGACATCTCACCCACCATATTTGGACAGGAATTACTTAAGTGAAT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000118282.9
ENSMUST00000232179.2
CDS-3UTR TCA 90 bp TTAAGTAATTCCTGTCCAAATATGGTGGGTGAGATGTCATTTCTGAAGTTCGAGACTGTTTCAGGATCCTaGATCAGGCGCTTAAATTTA +
Preference number: 4 (lower is better)
Translates to: LSNSCPNMVGEMSFLKFETVSGS*IRRLNL
Trigger: TAAATTTAAGCGCCTGATTCAGGATCCTGAAACAGT...CTCGAACTTCAGAAATGACATCTCACCCACCATATTTGGACAGGAATTACTTAA
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000118282.9
ENSMUST00000232179.2
CDS-3UTR TCA 90 bp CACACACACACACAGTCTGGAAAACATGCTTTAATTAAAGGTTGTTTTAGAGCATCTATTAATGTCCTGTaGTGGCTTGAGATACAGCCT +
Preference number: 4 (lower is better)
Translates to: HTHTQSGKHALIKGCFRASINVL*WLEIQP
Trigger: AGGCTGTATCTCAAGCCATCACAGGACATTAATAGA...TGCTCTAAAACAACCTTTAATTAAAGCATGTTTTCCAGACTGTGTGTGTGTGTG
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000118282.9
ENSMUST00000232179.2
CDS-3UTR TCA 90 bp ATTCACTTAAGTAATTCCTGTCCAAATATGGTGGGTGAGATGTCATTTCTGAAGCCTCTGGTGACAGCATaGATTATTCTAGCCACTAAA +
Preference number: 4 (lower is better)
Translates to: IHLSNSCPNMVGEMSFLKPLVTA*IILATK
Trigger: TTTAGTGGCTAGAATAATTCATGCTGTCACCAGAGG...CTTCAGAAATGACATCTCACCCACCATATTTGGACAGGAATTACTTAAGTGAAT
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000118282.9
ENSMUST00000232179.2
CDS-3UTR TCA 90 bp CACACACACACACAGTCTGGAAAACATGCTTTAATTAAAGGTTGTTTTAGAGCAGATCCAATGATTCCTTaGGATTTTGCTGGACAGAGA +
Preference number: 4 (lower is better)
Translates to: HTHTQSGKHALIKGCFRADPMIP*DFAGQR
Trigger: TCTCTGTCCAGCAAAATCTCAAGGAATCATTGGATC...TGCTCTAAAACAACCTTTAATTAAAGCATGTTTTCCAGACTGTGTGTGTGTGTG
39% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000118282.9
ENSMUST00000232179.2
CDS-3UTR TCA 90 bp TTAAGTAATTCCTGTCCAAATATGGTGGGTGAGATGTCATTTCTGAAGTTCGAGTTTTATGACAGTTGCTaGTGTAAGCAAACGTTGCCT +
Preference number: 4 (lower is better)
Translates to: LSNSCPNMVGEMSFLKFEFYDSC*CKQTLP
Trigger: AGGCAACGTTTGCTTACATCAGCAACTGTCATAAAA...CTCGAACTTCAGAAATGACATCTCACCCACCATATTTGGACAGGAATTACTTAA
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000118282.9
ENSMUST00000232179.2
CDS-3UTR TCA 90 bp CACACACACACACAGTCTGGAAAACATGCTTTAATTAAAGGTTGTTTTAGAGCAGCAACGACACATCTGTaGAATGAGAAGACCTTTTGT +
Preference number: 4 (lower is better)
Translates to: HTHTQSGKHALIKGCFRAATTHL*NEKTFC
Trigger: ACAAAAGGTCTTCTCATTTCACAGATGTGTCGTTGC...TGCTCTAAAACAACCTTTAATTAAAGCATGTTTTCCAGACTGTGTGTGTGTGTG
39% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000118282.9
ENSMUST00000232179.2
CDS-3UTR TCA 90 bp CACACACACACACAGTCTGGAAAACATGCTTTAATTAAAGGTTGTTTTAGAGCAATAACTGCAACAAGCTaGCAACTAGCTTCACCACAA +
Preference number: 4 (lower is better)
Translates to: HTHTQSGKHALIKGCFRAITATS*QLASPQ
Trigger: TTGTGGTGAAGCTAGTTGTCAGCTTGTTGCAGTTAT...TGCTCTAAAACAACCTTTAATTAAAGCATGTTTTCCAGACTGTGTGTGTGTGTG
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000118282.9
ENSMUST00000232179.2
CDS-3UTR TCA 90 bp ATTCACTTAAGTAATTCCTGTCCAAATATGGTGGGTGAGATGTCATTTCTGAAGATTCGAGCAGCCAATTaGTACATGAGAGGCAAAAAC +
Preference number: 4 (lower is better)
Translates to: IHLSNSCPNMVGEMSFLKIRAAN*YMRGKN
Trigger: GTTTTTGCCTCTCATGTATCAATTGGCTGCTCGAAT...CTTCAGAAATGACATCTCACCCACCATATTTGGACAGGAATTACTTAAGTGAAT
39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000118282.9
ENSMUST00000232179.2
CDS-3UTR GCA 90 bp TTAAGTAATTCCTGTCCAAATATGGTGGGTGAGATGTCATTTCTGAAGTTCGAGCCAGGTTTGATTTCTTaGCTTGACATAAGGCAACTT +
Preference number: 4 (lower is better)
Translates to: LSNSCPNMVGEMSFLKFEPGLIS*LDIRQL
Trigger: AAGTTGCCTTATGTCAAGGCAAGAAATCAAACCTGG...CTCGAACTTCAGAAATGACATCTCACCCACCATATTTGGACAGGAATTACTTAA
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000118282.9
ENSMUST00000232179.2
CDS-3UTR GCA 90 bp ATTCACTTAAGTAATTCCTGTCCAAATATGGTGGGTGAGATGTCATTTCTGAAGTACACAGATGCTAAGTaGCAAAGTCAAGCAGCATAC +
Preference number: 4 (lower is better)
Translates to: IHLSNSCPNMVGEMSFLKYTDAK*QSQAAY
Trigger: GTATGCTGCTTGACTTTGGCACTTAGCATCTGTGTA...CTTCAGAAATGACATCTCACCCACCATATTTGGACAGGAATTACTTAAGTGAAT
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000118282.9
ENSMUST00000232179.2
CDS-3UTR GCA 90 bp TTAAGTAATTCCTGTCCAAATATGGTGGGTGAGATGTCATTTCTGAAGTTCGAGAGAGATACTTTCTCCTaGACATTGCATCAGAGACTT +
Preference number: 4 (lower is better)
Translates to: LSNSCPNMVGEMSFLKFERDTFS*TLHQRL
Trigger: AAGTCTCTGATGCAATGTGCAGGAGAAAGTATCTCT...CTCGAACTTCAGAAATGACATCTCACCCACCATATTTGGACAGGAATTACTTAA
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000118282.9
ENSMUST00000232179.2
CDS-3UTR GCA 90 bp ATTCACTTAAGTAATTCCTGTCCAAATATGGTGGGTGAGATGTCATTTCTGAAGAAAGCAAACAAAGCCTaGTTTTCACAGACTGGGCTA +
Preference number: 4 (lower is better)
Translates to: IHLSNSCPNMVGEMSFLKKANKA*FSQTGL
Trigger: TAGCCCAGTCTGTGAAAAGCAGGCTTTGTTTGCTTT...CTTCAGAAATGACATCTCACCCACCATATTTGGACAGGAATTACTTAAGTGAAT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000118282.9
ENSMUST00000232179.2
CDS-3UTR GCA 90 bp ATTCACTTAAGTAATTCCTGTCCAAATATGGTGGGTGAGATGTCATTTCTGAAGCACACTGCGTGTATATaGCAATCGTTTCTCAAACCA +
Preference number: 4 (lower is better)
Translates to: IHLSNSCPNMVGEMSFLKHTACI*QSFLKP
Trigger: TGGTTTGAGAAACGATTGGCATATACACGCAGTGTG...CTTCAGAAATGACATCTCACCCACCATATTTGGACAGGAATTACTTAAGTGAAT
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000118282.9
ENSMUST00000232179.2
CDS-3UTR GCA 90 bp CACACACACACACAGTCTGGAAAACATGCTTTAATTAAAGGTTGTTTTAGAGCACACACTGCGTGTATATaGCAATCGTTTCTCAAACCA +
Preference number: 4 (lower is better)
Translates to: HTHTQSGKHALIKGCFRAHTACI*QSFLKP
Trigger: TGGTTTGAGAAACGATTGGCATATACACGCAGTGTG...TGCTCTAAAACAACCTTTAATTAAAGCATGTTTTCCAGACTGTGTGTGTGTGTG
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000118282.9
ENSMUST00000232179.2
CDS-3UTR CCA 90 bp TTAAGTAATTCCTGTCCAAATATGGTGGGTGAGATGTCATTTCTGAAGTTCGAGCTTCAGTTTAGTGATTaGCTGGTTGGCTGGAATATT +
Preference number: 4 (lower is better)
Translates to: LSNSCPNMVGEMSFLKFELQFSD*LVGWNI
Trigger: AATATTCCAGCCAACCAGCCAATCACTAAACTGAAG...CTCGAACTTCAGAAATGACATCTCACCCACCATATTTGGACAGGAATTACTTAA
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000118282.9
ENSMUST00000232179.2
CDS-3UTR CCA 90 bp TTAAGTAATTCCTGTCCAAATATGGTGGGTGAGATGTCATTTCTGAAGTTCGAGCTCAAACCAAACAGCTaGGTCCAAGAATTTTTCCAT +
Preference number: 4 (lower is better)
Translates to: LSNSCPNMVGEMSFLKFELKPNS*VQEFFH
Trigger: ATGGAAAAATTCTTGGACCCAGCTGTTTGGTTTGAG...CTCGAACTTCAGAAATGACATCTCACCCACCATATTTGGACAGGAATTACTTAA
39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000118282.9
ENSMUST00000232179.2
CDS-3UTR TCA 90 bp TTAAGTAATTCCTGTCCAAATATGGTGGGTGAGATGTCATTTCTGAAGTTCGAGCAGAAAGAATGTCTTTaGGTAGTATGTTGCTACAGT +
Preference number: 4 (lower is better)
Translates to: LSNSCPNMVGEMSFLKFEQKECL*VVCCYS
Trigger: ACTGTAGCAACATACTACTCAAAGACATTCTTTCTG...CTCGAACTTCAGAAATGACATCTCACCCACCATATTTGGACAGGAATTACTTAA
38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000118282.9
ENSMUST00000232179.2
CDS-3UTR TCA 90 bp ATTCACTTAAGTAATTCCTGTCCAAATATGGTGGGTGAGATGTCATTTCTGAAGGAGCCACCTCATTATTaGCTCCTTTACAGAAAAACT +
Preference number: 4 (lower is better)
Translates to: IHLSNSCPNMVGEMSFLKEPPHY*LLYRKT
Trigger: AGTTTTTCTGTAAAGGAGTCAATAATGAGGTGGCTC...CTTCAGAAATGACATCTCACCCACCATATTTGGACAGGAATTACTTAAGTGAAT
38% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000118282.9
ENSMUST00000232179.2
CDS-3UTR TCA 90 bp TTAAGTAATTCCTGTCCAAATATGGTGGGTGAGATGTCATTTCTGAAGTTCGAGAGGTTTGTCACTATATaGAGGACATTGCTTAGAATC +
Preference number: 4 (lower is better)
Translates to: LSNSCPNMVGEMSFLKFERFVTI*RTLLRI
Trigger: GATTCTAAGCAATGTCCTTCATATAGTGACAAACCT...CTCGAACTTCAGAAATGACATCTCACCCACCATATTTGGACAGGAATTACTTAA
38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000118282.9
ENSMUST00000232179.2
CDS-3UTR TCA 90 bp ATTCACTTAAGTAATTCCTGTCCAAATATGGTGGGTGAGATGTCATTTCTGAAGGACACATCTGTGAAATaGGAAGACCTTTTGTTGATG +
Preference number: 4 (lower is better)
Translates to: IHLSNSCPNMVGEMSFLKDTSVK*EDLLLM
Trigger: CATCAACAAAAGGTCTTCTCATTTCACAGATGTGTC...CTTCAGAAATGACATCTCACCCACCATATTTGGACAGGAATTACTTAAGTGAAT
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000118282.9
ENSMUST00000232179.2
CDS-3UTR GCA 90 bp CACACACACACACAGTCTGGAAAACATGCTTTAATTAAAGGTTGTTTTAGAGCACTGGTAACAGATATCTaGCATCAGGTCAATCAGATT +
Preference number: 4 (lower is better)
Translates to: HTHTQSGKHALIKGCFRALVTDI*HQVNQI
Trigger: AATCTGATTGACCTGATGGCAGATATCTGTTACCAG...TGCTCTAAAACAACCTTTAATTAAAGCATGTTTTCCAGACTGTGTGTGTGTGTG
38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000118282.9
ENSMUST00000232179.2
CDS-3UTR GCA 90 bp ATTCACTTAAGTAATTCCTGTCCAAATATGGTGGGTGAGATGTCATTTCTGAAGAGAGATACTTTCTCCTaGACATTGCATCAGAGACTT +
Preference number: 4 (lower is better)
Translates to: IHLSNSCPNMVGEMSFLKRDTFS*TLHQRL
Trigger: AAGTCTCTGATGCAATGTGCAGGAGAAAGTATCTCT...CTTCAGAAATGACATCTCACCCACCATATTTGGACAGGAATTACTTAAGTGAAT
38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000118282.9
ENSMUST00000232179.2
CDS-3UTR GCA 90 bp TTAAGTAATTCCTGTCCAAATATGGTGGGTGAGATGTCATTTCTGAAGTTCGAGTCTCTTGCTCGTCTGTaGTTTTCTTATCTGAATAGA +
Preference number: 4 (lower is better)
Translates to: LSNSCPNMVGEMSFLKFESLARL*FSYLNR
Trigger: TCTATTCAGATAAGAAAAGCACAGACGAGCAAGAGA...CTCGAACTTCAGAAATGACATCTCACCCACCATATTTGGACAGGAATTACTTAA
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000118282.9
ENSMUST00000232179.2
CDS-3UTR GCA 90 bp ATTCACTTAAGTAATTCCTGTCCAAATATGGTGGGTGAGATGTCATTTCTGAAGGGACTTCTTTTCTCTTaGTCGTCTGTGCTTTTCTTA +
Preference number: 4 (lower is better)
Translates to: IHLSNSCPNMVGEMSFLKGLLFS*SSVLFL
Trigger: TAAGAAAAGCACAGACGAGCAAGAGAAAAGAAGTCC...CTTCAGAAATGACATCTCACCCACCATATTTGGACAGGAATTACTTAAGTGAAT
38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000118282.9
ENSMUST00000232179.2
CDS-3UTR GCA 90 bp TTAAGTAATTCCTGTCCAAATATGGTGGGTGAGATGTCATTTCTGAAGTTCGAGAACTTCTTGATCATCTaGTTGAGAATACTCAGAGCA +
Preference number: 4 (lower is better)
Translates to: LSNSCPNMVGEMSFLKFENFLII*LRILRA
Trigger: TGCTCTGAGTATTCTCAAGCAGATGATCAAGAAGTT...CTCGAACTTCAGAAATGACATCTCACCCACCATATTTGGACAGGAATTACTTAA
38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000118282.9
ENSMUST00000232179.2
CDS-3UTR CCA 90 bp ATTCACTTAAGTAATTCCTGTCCAAATATGGTGGGTGAGATGTCATTTCTGAAGGTACACTGTAATCAGTaGATTCCCTTTGTGTCACAT +
Preference number: 4 (lower is better)
Translates to: IHLSNSCPNMVGEMSFLKVHCNQ*IPFVSH
Trigger: ATGTGACACAAAGGGAATCCACTGATTACAGTGTAC...CTTCAGAAATGACATCTCACCCACCATATTTGGACAGGAATTACTTAAGTGAAT
38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000118282.9
ENSMUST00000232179.2
CDS-3UTR CCA 90 bp TTAAGTAATTCCTGTCCAAATATGGTGGGTGAGATGTCATTTCTGAAGTTCGAGCTCCACCACAATCTCTaGCAAATTACTAATGAATAC +
Preference number: 4 (lower is better)
Translates to: LSNSCPNMVGEMSFLKFELHHNL*QITNEY
Trigger: GTATTCATTAGTAATTTGCCAGAGATTGTGGTGGAG...CTCGAACTTCAGAAATGACATCTCACCCACCATATTTGGACAGGAATTACTTAA
38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000118282.9
ENSMUST00000232179.2
CDS-3UTR CCA 90 bp ATTCACTTAAGTAATTCCTGTCCAAATATGGTGGGTGAGATGTCATTTCTGAAGTGCAGTAAAACATCATaGATCAAGTATGGCAGCAAC +
Preference number: 4 (lower is better)
Translates to: IHLSNSCPNMVGEMSFLKCSKTS*IKYGSN
Trigger: GTTGCTGCCATACTTGATCCATGATGTTTTACTGCA...CTTCAGAAATGACATCTCACCCACCATATTTGGACAGGAATTACTTAAGTGAAT
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000118282.9
ENSMUST00000232179.2
CDS-3UTR CCA 90 bp ATTCACTTAAGTAATTCCTGTCCAAATATGGTGGGTGAGATGTCATTTCTGAAGCTTCAGTTTAGTGATTaGCTGGTTGGCTGGAATATT +
Preference number: 4 (lower is better)
Translates to: IHLSNSCPNMVGEMSFLKLQFSD*LVGWNI
Trigger: AATATTCCAGCCAACCAGCCAATCACTAAACTGAAG...CTTCAGAAATGACATCTCACCCACCATATTTGGACAGGAATTACTTAAGTGAAT
38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000118282.9
ENSMUST00000232179.2
3UTR CAA 72 bp TTAATTAAAGGTTGTTTTAGAGCAGAAGTTACGAACTaGTCTTCATGTACACCAGCAGTAAAGCTCACTCTG +
Preference number: 4 (lower is better)
Translates to: LIKGCFRAEVTN*SSCTPAVKLTL
Trigger: CAGAGTGAGCTTTACTGCTGGTGTACATGAAGACAAGTTCGTAACTTCTGCTCTAAAACAACCTTTAATTAA
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000118282.9
ENSMUST00000232179.2
CDS-3UTR TCA 90 bp ATTCACTTAAGTAATTCCTGTCCAAATATGGTGGGTGAGATGTCATTTCTGAAGAATAAATCTGACTTCTaGGAGCTTTCCAGGTTTGAT +
Preference number: 4 (lower is better)
Translates to: IHLSNSCPNMVGEMSFLKNKSDF*ELSRFD
Trigger: ATCAAACCTGGAAAGCTCTCAGAAGTCAGATTTATT...CTTCAGAAATGACATCTCACCCACCATATTTGGACAGGAATTACTTAAGTGAAT
37% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000118282.9
ENSMUST00000232179.2
CDS-3UTR TCA 90 bp CACACACACACACAGTCTGGAAAACATGCTTTAATTAAAGGTTGTTTTAGAGCAAATAAATCTGACTTCTaGGAGCTTTCCAGGTTTGAT +
Preference number: 4 (lower is better)
Translates to: HTHTQSGKHALIKGCFRANKSDF*ELSRFD
Trigger: ATCAAACCTGGAAAGCTCTCAGAAGTCAGATTTATT...TGCTCTAAAACAACCTTTAATTAAAGCATGTTTTCCAGACTGTGTGTGTGTGTG
37% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000118282.9
ENSMUST00000232179.2
CDS-3UTR TCA 90 bp CACACACACACACAGTCTGGAAAACATGCTTTAATTAAAGGTTGTTTTAGAGCAAAGATAGTGATCCAATaGTTCCTTGAGATTTTGCTG +
Preference number: 4 (lower is better)
Translates to: HTHTQSGKHALIKGCFRAKIVIQ*FLEILL
Trigger: CAGCAAAATCTCAAGGAATCATTGGATCACTATCTT...TGCTCTAAAACAACCTTTAATTAAAGCATGTTTTCCAGACTGTGTGTGTGTGTG
37% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000118282.9
ENSMUST00000232179.2
CDS-3UTR TCA 90 bp CACACACACACACAGTCTGGAAAACATGCTTTAATTAAAGGTTGTTTTAGAGCAGAGAAGACCTTTTGTTaGTGTAGTGAATCAGAGTAT +
Preference number: 4 (lower is better)
Translates to: HTHTQSGKHALIKGCFRAEKTFC*CSESEY
Trigger: ATACTCTGATTCACTACATCAACAAAAGGTCTTCTC...TGCTCTAAAACAACCTTTAATTAAAGCATGTTTTCCAGACTGTGTGTGTGTGTG
37% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000118282.9
ENSMUST00000232179.2
CDS-3UTR GCA 90 bp TTAAGTAATTCCTGTCCAAATATGGTGGGTGAGATGTCATTTCTGAAGTTCGAGTGTTCCCATTTTTATTaGATCTGGAACTACACAGAT +
Preference number: 4 (lower is better)
Translates to: LSNSCPNMVGEMSFLKFECSHFY*IWNYTD
Trigger: ATCTGTGTAGTTCCAGATGCAATAAAAATGGGAACA...CTCGAACTTCAGAAATGACATCTCACCCACCATATTTGGACAGGAATTACTTAA
37% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000118282.9
ENSMUST00000232179.2
CDS-3UTR GCA 90 bp ATTCACTTAAGTAATTCCTGTCCAAATATGGTGGGTGAGATGTCATTTCTGAAGTCTCTTGCTCGTCTGTaGTTTTCTTATCTGAATAGA +
Preference number: 4 (lower is better)
Translates to: IHLSNSCPNMVGEMSFLKSLARL*FSYLNR
Trigger: TCTATTCAGATAAGAAAAGCACAGACGAGCAAGAGA...CTTCAGAAATGACATCTCACCCACCATATTTGGACAGGAATTACTTAAGTGAAT
37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000118282.9
ENSMUST00000232179.2
CDS-3UTR GCA 90 bp CACACACACACACAGTCTGGAAAACATGCTTTAATTAAAGGTTGTTTTAGAGCAAACTTCTTGATCATCTaGTTGAGAATACTCAGAGCA +
Preference number: 4 (lower is better)
Translates to: HTHTQSGKHALIKGCFRANFLII*LRILRA
Trigger: TGCTCTGAGTATTCTCAAGCAGATGATCAAGAAGTT...TGCTCTAAAACAACCTTTAATTAAAGCATGTTTTCCAGACTGTGTGTGTGTGTG
37% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000118282.9
ENSMUST00000232179.2
CDS-3UTR CCA 90 bp CACACACACACACAGTCTGGAAAACATGCTTTAATTAAAGGTTGTTTTAGAGCACTGCTTGTTCACAAATaGCCAGAAGTATTTTCTGAT +
Preference number: 4 (lower is better)
Translates to: HTHTQSGKHALIKGCFRALLVHK*PEVFSD
Trigger: ATCAGAAAATACTTCTGGCCATTTGTGAACAAGCAG...TGCTCTAAAACAACCTTTAATTAAAGCATGTTTTCCAGACTGTGTGTGTGTGTG
37% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000118282.9
ENSMUST00000232179.2
CDS-3UTR CCA 90 bp CACACACACACACAGTCTGGAAAACATGCTTTAATTAAAGGTTGTTTTAGAGCACGACAACAGCAAGCATaGTTCTTTGTGACTTTTTAT +
Preference number: 4 (lower is better)
Translates to: HTHTQSGKHALIKGCFRARQQQA*FFVTFY
Trigger: ATAAAAAGTCACAAAGAACCATGCTTGCTGTTGTCG...TGCTCTAAAACAACCTTTAATTAAAGCATGTTTTCCAGACTGTGTGTGTGTGTG
37% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000118282.9
ENSMUST00000232179.2
CDS-3UTR GCA 90 bp CACACACACACACAGTCTGGAAAACATGCTTTAATTAAAGGTTGTTTTAGAGCACAACTTGTACACAGATaGATCACATTTCTCAATGAA +
Preference number: 4 (lower is better)
Translates to: HTHTQSGKHALIKGCFRAQLVHR*ITFLNE
Trigger: TTCATTGAGAAATGTGATGCATCTGTGTACAAGTTG...TGCTCTAAAACAACCTTTAATTAAAGCATGTTTTCCAGACTGTGTGTGTGTGTG
36% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000118282.9
ENSMUST00000232179.2
CDS-3UTR CCA 90 bp ATTCACTTAAGTAATTCCTGTCCAAATATGGTGGGTGAGATGTCATTTCTGAAGTTACTGTGTATCTGTTaGTCTGAATTTTATGTTCCC +
Preference number: 4 (lower is better)
Translates to: IHLSNSCPNMVGEMSFLKLLCIC*SEFYVP
Trigger: GGGAACATAAAATTCAGACCAACAGATACACAGTAA...CTTCAGAAATGACATCTCACCCACCATATTTGGACAGGAATTACTTAAGTGAAT
36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000118282.9
ENSMUST00000232179.2
CDS-3UTR CCA 90 bp CACACACACACACAGTCTGGAAAACATGCTTTAATTAAAGGTTGTTTTAGAGCAACTTTGTTGAAACTCTaGTCAGTATCACTAAGACTT +
Preference number: 4 (lower is better)
Translates to: HTHTQSGKHALIKGCFRATLLKL*SVSLRL
Trigger: AAGTCTTAGTGATACTGACCAGAGTTTCAACAAAGT...TGCTCTAAAACAACCTTTAATTAAAGCATGTTTTCCAGACTGTGTGTGTGTGTG
36% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000118282.9
ENSMUST00000232179.2
CDS TCA 90 bp CAGGATATGGGAGAGCCCCAAATTCTGCAGGGCCTGGATGATTCCTaGCTGGCGGGTGGAGGAGGAGATGCTGGTCTCCAGGTCGTAAGT +
Preference number: 5 (lower is better)
Translates to: QDMGEPQILQGLDDS*LAGGGGDAGLQVVS
Trigger: ACTTACGACCTGGAGACCAGCATCTCCTCCTCCACCCGCCAGTCAGGAATCATCCAGGCCCTGCAGAATTTGGGGCTCTCCCATATCCTG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000118282.9
ENSMUST00000232179.2
CDS TCA 90 bp AGACAGACAGGATATGGGAGAGCCCCAAATTCTGCAGGGCCTGGATaGTTCCTGACTGGCGGGTGGAGGAGGAGATGCTGGTCTCCAGGT +
Preference number: 5 (lower is better)
Translates to: RQTGYGRAPNSAGPG*FLTGGWRRRCWSPG
Trigger: ACCTGGAGACCAGCATCTCCTCCTCCACCCGCCAGTCAGGAATCATCCAGGCCCTGCAGAATTTGGGGCTCTCCCATATCCTGTCTGTCT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000118282.9
ENSMUST00000232179.2
CDS-3UTR CAA 90 bp AGCTCACTCTGCTGCCCCCACCATTTGCAGTTCAGTGTGTATGCGGCGGTCTTGCTGCATGACAGCATCTaGCCTCAGGTCATCACGGCC +
Preference number: 5 (lower is better)
Translates to: SSLCCPHHLQFSVYAAVLLHDSI*PQVITA
Trigger: GGCCGTGATGACCTGAGGCAAGATGCTGTCATGCAG...CAAGACCGCCGCATACACACTGAACTGCAAATGGTGGGGGCAGCAGAGTGAGCT
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000118282.9
ENSMUST00000232179.2
CDS TCA 90 bp ACCAGGGTCTCCAGAATGACTGTGCGCAGAGCCATGAGAGGCTCCTaGAAGCTGAAGTCGCTGTCTTTCAGAAGCTGGGAGTGCTTCTGC +
Preference number: 5 (lower is better)
Translates to: TRVSRMTVRRAMRGS*KLKSLSFRSWECFC
Trigger: GCAGAAGCACTCCCAGCTTCTGAAAGACAGCGACTTCAGCTTTCAGGAGCCTCTCATGGCTCTGCGCACAGTCATTCTGGAGACCCTGGT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000118282.9
ENSMUST00000232179.2
CDS-3UTR CAA 90 bp TACAGGTTAGGCACATGTTCTCCCACTGAGCCACACTCCAGCCCTACCTACATTAGGCCTCCCGTCATTTaGGTCCCCATTCGAGCAGCC +
Preference number: 5 (lower is better)
Translates to: YRLGTCSPTEPHSSPTYIRPPVI*VPIRAA
Trigger: GGCTGCTCGAATGGGGACCAAAATGACGGGAGGCCT...AATGTAGGTAGGGCTGGAGTGTGGCTCAGTGGGAGAACATGTGCCTAACCTGTA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000118282.9
CDS-3UTR CAA 90 bp GCTCACTCTGCTGCCCCCACCATTTGCAGTTCAGTGTGTATGCGGCGGTCTTGCAGCTGTCTCCTTTCCTaGCCATCAGAACCCACACAA +
Preference number: 5 (lower is better)
Translates to: AHSAAPTICSSVCMRRSCSCLLS*PSEPTQ
Trigger: TTGTGTGGGTTCTGATGGCAAGGAAAGGAGACAGCT...GCAAGACCGCCGCATACACACTGAACTGCAAATGGTGGGGGCAGCAGAGTGAGC
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000118282.9
ENSMUST00000232179.2
CDS GCA 90 bp GTTCTCCACTGCTTTACACAGGAAGCGCTTGCGATCCTCTCTCAGTaGACGGAGAGCACATTCGTCCAGCTCCAGTTCTCGCTGAACCTT +
Preference number: 5 (lower is better)
Translates to: VLHCFTQEALAILSQ*TESTFVQLQFSLNL
Trigger: AAGGTTCAGCGAGAACTGGAGCTGGACGAATGTGCTCTCCGTGCACTGAGAGAGGATCGCAAGCGCTTCCTGTGTAAAGCAGTGGAGAAC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000118282.9
ENSMUST00000232179.2
CDS CCA 90 bp GCTCACAGAACTAGCGGGGTAAGCAGTAGAAAGACCAGTGGACGATaGACCCTCTGCCTCCATCAGACTGTCACAACCACCACCATCTTC +
Preference number: 5 (lower is better)
Translates to: AHRTSGVSSRKTSGR*TLCLHQTVTTTTIF
Trigger: GAAGATGGTGGTGGTTGTGACAGTCTGATGGAGGCAGAGGGTCCATCGTCCACTGGTCTTTCTACTGCTTACCCCGCTAGTTCTGTGAGC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000118282.9
ENSMUST00000232179.2
CDS CCA 90 bp CATCCTGGGAAGAGTCGGCTGAGATTTTTGGGATCCATGGCCTGCTaGATAAGCAAGTTCACCTGTCCACCCACACTGAGCACAGTGCCT +
Preference number: 5 (lower is better)
Translates to: HPGKSRLRFLGSMAC*ISKFTCPPTLSTVP
Trigger: AGGCACTGTGCTCAGTGTGGGTGGACAGGTGAACTTGCTTATCCAGCAGGCCATGGATCCCAAAAATCTCAGCCGACTCTTCCCAGGATG
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000118282.9
ENSMUST00000232179.2
CDS-3UTR CAA 90 bp AGCTCACTCTGCTGCCCCCACCATTTGCAGTTCAGTGTGTATGCGGCGGTCTTGCGTTTTACAGACATCTaGGTCACGTCGGTGCAGAGA +
Preference number: 5 (lower is better)
Translates to: SSLCCPHHLQFSVYAAVLRFTDI*VTSVQR
Trigger: TCTCTGCACCGACGTGACCAAGATGTCTGTAAAACG...CAAGACCGCCGCATACACACTGAACTGCAAATGGTGGGGGCAGCAGAGTGAGCT
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000118282.9
ENSMUST00000232179.2
CDS-3UTR CAA 90 bp CTTGTCTTCATGTACACCAGCAGTAAAGCTCACTCTGCTGCCCCCACCATTTGCGGGAAATATGGCGGGTaGGGGGCAGGATCCAAATCC +
Preference number: 5 (lower is better)
Translates to: LVFMYTSSKAHSAAPTICGKYGG*GAGSKS
Trigger: GGATTTGGATCCTGCCCCCAACCCGCCATATTTCCC...GCAAATGGTGGGGGCAGCAGAGTGAGCTTTACTGCTGGTGTACATGAAGACAAG
54% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000118282.9
ENSMUST00000232179.2
CDS-3UTR CAA 90 bp AGCTCACTCTGCTGCCCCCACCATTTGCAGTTCAGTGTGTATGCGGCGGTCTTGCTCTGCAGTAGTGTATaGCACATCTGGAAGACCTGC +
Preference number: 5 (lower is better)
Translates to: SSLCCPHHLQFSVYAAVLLCSSV*HIWKTC
Trigger: GCAGGTCTTCCAGATGTGCAATACACTACTGCAGAG...CAAGACCGCCGCATACACACTGAACTGCAAATGGTGGGGGCAGCAGAGTGAGCT
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000118282.9
ENSMUST00000232179.2
CDS GCA 90 bp TTCCATCCTGGGAAGAGTCGGCTGAGATTTTTGGGATCCATGGCCTaGTGGATAAGCAAGTTCACCTGTCCACCCACACTGAGCACAGTG +
Preference number: 5 (lower is better)
Translates to: FHPGKSRLRFLGSMA*WISKFTCPPTLSTV
Trigger: CACTGTGCTCAGTGTGGGTGGACAGGTGAACTTGCTTATCCAGCAGGCCATGGATCCCAAAAATCTCAGCCGACTCTTCCCAGGATGGAA
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000118282.9
ENSMUST00000232179.2
CDS-3UTR CAA 90 bp CTTGTCTTCATGTACACCAGCAGTAAAGCTCACTCTGCTGCCCCCACCATTTGCTTCTCCACGTCGCTGTaGAGGCAGAAGCTGGTACAG +
Preference number: 5 (lower is better)
Translates to: LVFMYTSSKAHSAAPTICFSTSL*RQKLVQ
Trigger: CTGTACCAGCTTCTGCCTCAACAGCGACGTGGAGAA...GCAAATGGTGGGGGCAGCAGAGTGAGCTTTACTGCTGGTGTACATGAAGACAAG
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000118282.9
ENSMUST00000232179.2
CDS-3UTR CAA 90 bp TCATGTACACCAGCAGTAAAGCTCACTCTGCTGCCCCCACCATTTGCAGTTCAGAGTCGGCTGAGATTTTaGGGATCCATGGCCTGCTGG +
Preference number: 5 (lower is better)
Translates to: SCTPAVKLTLLPPPFAVQSRLRF*GSMACW
Trigger: CCAGCAGGCCATGGATCCCAAAAATCTCAGCCGACT...CTGAACTGCAAATGGTGGGGGCAGCAGAGTGAGCTTTACTGCTGGTGTACATGA
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000118282.9
ENSMUST00000232179.2
CDS TCA 90 bp TTTGTCAAATGCCAAAATGCTCCCATCACTGTCAGGAAGTGTCCTTaGGCAATCCGTGTGCTCTCCATGTCCACACTGCCCTGGCCTAGG +
Preference number: 5 (lower is better)
Translates to: FVKCQNAPITVRKCP*AIRVLSMSTLPWPR
Trigger: CCTAGGCCAGGGCAGTGTGGACATGGAGAGCACACGGATTGCTCAAGGACACTTCCTGACAGTGATGGGAGCATTTTGGCATTTGACAAA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000118282.9
ENSMUST00000232179.2
CDS TCA 90 bp CCAATAGGAACGGTTCCTGTGCACCACTCGAGAACACCGCTTCGCTaGGAAAGGGGAACCACCTTGTATGTGCAGATAGTCAGTTTCCTC +
Preference number: 5 (lower is better)
Translates to: PIGTVPVHHSRTPLR*ERGTTLYVQIVSFL
Trigger: GAGGAAACTGACTATCTGCACATACAAGGTGGTTCCCCTTTCTCAGCGAAGCGGTGTTCTCGAGTGGTGCACAGGAACCGTTCCTATTGG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000118282.9
ENSMUST00000132249.2
ENSMUST00000232179.2
CDS GCA 90 bp CTTCCCCTGTTCAAAAGCCACTCCCAGGTCTATGTGCACAAGCTCTaGCGACTGCTCGTTTATCAAGATATTCTGTACGTGCCTGTCGCC +
Preference number: 5 (lower is better)
Translates to: LPLFKSHSQVYVHKL*RLLVYQDILYVPVA
Trigger: GGCGACAGGCACGTACAGAATATCTTGATAAACGAGCAGTCGGCAGAGCTTGTGCACATAGACCTGGGAGTGGCTTTTGAACAGGGGAAG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000118282.9
ENSMUST00000232179.2
CDS-3UTR CAA 90 bp AGCTCACTCTGCTGCCCCCACCATTTGCAGTTCAGTGTGTATGCGGCGGTCTTGAGCCTGGGTGCTCTTTaGTTTGCACATTTGATGAAG +
Preference number: 5 (lower is better)
Translates to: SSLCCPHHLQFSVYAAVLSLGAL*FAHLMK
Trigger: CTTCATCAAATGTGCAAACAAAAGAGCACCCAGGCT...CAAGACCGCCGCATACACACTGAACTGCAAATGGTGGGGGCAGCAGAGTGAGCT
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000118282.9
ENSMUST00000232179.2
CDS-3UTR CAA 90 bp AGCTCACTCTGCTGCCCCCACCATTTGCAGTTCAGTGTGTATGCGGCGGTCTTGACTTTCTCCTGCACATaGCATCAGAGACTTGGCTTT +
Preference number: 5 (lower is better)
Translates to: SSLCCPHHLQFSVYAAVLTFSCT*HQRLGF
Trigger: AAAGCCAAGTCTCTGATGCAATGTGCAGGAGAAAGT...CAAGACCGCCGCATACACACTGAACTGCAAATGGTGGGGGCAGCAGAGTGAGCT
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000118282.9
ENSMUST00000232179.2
CDS-3UTR CAA 90 bp GCTCACTCTGCTGCCCCCACCATTTGCAGTTCAGTGTGTATGCGGCGGTCTTGCACTTTGTTTGCATTCTaGATCATCTGCATTGGGGGT +
Preference number: 5 (lower is better)
Translates to: AHSAAPTICSSVCMRRSCTLFAF*IICIGG
Trigger: ACCCCCAATGCAGATGATCAAGAATGCAAACAAAGT...GCAAGACCGCCGCATACACACTGAACTGCAAATGGTGGGGGCAGCAGAGTGAGC
52% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000118282.9
ENSMUST00000232179.2
CDS-3UTR CAA 90 bp GTTACGAACTTGTCTTCATGTACACCAGCAGTAAAGCTCACTCTGCTGCCCCCAAGTCGGCTGAGATTTTaGGGATCCATGGCCTGCTGG +
Preference number: 5 (lower is better)
Translates to: VTNLSSCTPAVKLTLLPPSRLRF*GSMACW
Trigger: CCAGCAGGCCATGGATCCCAAAAATCTCAGCCGACT...TGGGGGCAGCAGAGTGAGCTTTACTGCTGGTGTACATGAAGACAAGTTCGTAAC
52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000118282.9
ENSMUST00000232179.2
CDS TCA 90 bp CAGAGAACCTTGCCAACGAGAGAAAGGCCTTCATCTGTCCATTTCTaGGCTCTCTGCTGTTGCCATCGTAACTTCCAGCAACCTTCACCG +
Preference number: 5 (lower is better)
Translates to: QRTLPTRERPSSVHF*ALCCCHRNFQQPSP
Trigger: CGGTGAAGGTTGCTGGAAGTTACGATGGCAACAGCAGAGAGCTCAGAAATGGACAGATGAAGGCCTTTCTCTCGTTGGCAAGGTTCTCTG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000118282.9
ENSMUST00000232179.2
CDS TCA 90 bp GCCGGAACACCCACAGATCATGTTCTTCCCCGCTTAGTAAGCAGTTaGTGTAGTTCTCCACTGCTTTACACAGGAAGCGCTTGCGATCCT +
Preference number: 5 (lower is better)
Translates to: AGTPTDHVLPRLVSS*CSSPLLYTGSACDP
Trigger: AGGATCGCAAGCGCTTCCTGTGTAAAGCAGTGGAGAACTACATCAACTGCTTACTAAGCGGGGAAGAACATGATCTGTGGGTGTTCCGGC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000118282.9
ENSMUST00000232179.2
CDS TCA 90 bp TGTTTCTCTGCAGTAGTGTATTGCACATCTGGAAGACCTGCTGCATaGCAGCATCTTGCCTCAGGTCATCACGGCCCTTCACAAGCTGTC +
Preference number: 5 (lower is better)
Translates to: CFSAVVYCTSGRPAA*QHLASGHHGPSQAV
Trigger: GACAGCTTGTGAAGGGCCGTGATGACCTGAGGCAAGATGCTGTCATGCAGCAGGTCTTCCAGATGTGCAATACACTACTGCAGAGAAACA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000118282.9
ENSMUST00000232179.2
CDS GCA 90 bp AGTAGTGTATTGCACATCTGGAAGACCTGCTGCATGACAGCATCTTaGCTCAGGTCATCACGGCCCTTCACAAGCTGTCTCCTTTCCTTG +
Preference number: 5 (lower is better)
Translates to: SSVLHIWKTCCMTAS*LRSSRPFTSCLLSL
Trigger: CAAGGAAAGGAGACAGCTTGTGAAGGGCCGTGATGACCTGAGGCAAGATGCTGTCATGCAGCAGGTCTTCCAGATGTGCAATACACTACT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000118282.9
ENSMUST00000232179.2
CDS GCA 90 bp TCAGTGTTTCTCTGCAGTAGTGTATTGCACATCTGGAAGACCTGCTaGATGACAGCATCTTGCCTCAGGTCATCACGGCCCTTCACAAGC +
Preference number: 5 (lower is better)
Translates to: SVFLCSSVLHIWKTC*MTASCLRSSRPFTS
Trigger: GCTTGTGAAGGGCCGTGATGACCTGAGGCAAGATGCTGTCATGCAGCAGGTCTTCCAGATGTGCAATACACTACTGCAGAGAAACACTGA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000118282.9
ENSMUST00000232179.2
CDS GCA 90 bp GTCTCAGTGTTTCTCTGCAGTAGTGTATTGCACATCTGGAAGACCTaGTGCATGACAGCATCTTGCCTCAGGTCATCACGGCCCTTCACA +
Preference number: 5 (lower is better)
Translates to: VSVFLCSSVLHIWKT*CMTASCLRSSRPFT
Trigger: TGTGAAGGGCCGTGATGACCTGAGGCAAGATGCTGTCATGCAGCAGGTCTTCCAGATGTGCAATACACTACTGCAGAGAAACACTGAGAC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000118282.9
ENSMUST00000232179.2
CDS-3UTR CAA 90 bp GCTCACTCTGCTGCCCCCACCATTTGCAGTTCAGTGTGTATGCGGCGGTCTTGCTTGTGTCACATAAGATaGAGAAATCTCCACGGATCT +
Preference number: 5 (lower is better)
Translates to: AHSAAPTICSSVCMRRSCLCHIR*RNLHGS
Trigger: AGATCCGTGGAGATTTCTCAATCTTATGTGACACAA...GCAAGACCGCCGCATACACACTGAACTGCAAATGGTGGGGGCAGCAGAGTGAGC
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000118282.9
ENSMUST00000232179.2
CDS-3UTR CAA 90 bp CTTGTCTTCATGTACACCAGCAGTAAAGCTCACTCTGCTGCCCCCACCATTTGCCACCCACCAAAAGACTaGAACACCGGACAAGGGTTT +
Preference number: 5 (lower is better)
Translates to: LVFMYTSSKAHSAAPTICHPPKD*NTGQGF
Trigger: AAACCCTTGTCCGGTGTTCAAGTCTTTTGGTGGGTG...GCAAATGGTGGGGGCAGCAGAGTGAGCTTTACTGCTGGTGTACATGAAGACAAG
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000118282.9
ENSMUST00000232179.2
CDS-3UTR CAA 90 bp GCAGAAGTTACGAACTTGTCTTCATGTACACCAGCAGTAAAGCTCACTCTGCTGGGGAAATATGGCGGGTaGGGGGCAGGATCCAAATCC +
Preference number: 5 (lower is better)
Translates to: AEVTNLSSCTPAVKLTLLGKYGG*GAGSKS
Trigger: GGATTTGGATCCTGCCCCCAACCCGCCATATTTCCC...CAGCAGAGTGAGCTTTACTGCTGGTGTACATGAAGACAAGTTCGTAACTTCTGC
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000118282.9
ENSMUST00000232179.2
CDS-3UTR CAA 90 bp CTTGTCTTCATGTACACCAGCAGTAAAGCTCACTCTGCTGCCCCCACCATTTGCTCCTCTACCAGGGTATaGTTGAGGGCAGTCAGCATT +
Preference number: 5 (lower is better)
Translates to: LVFMYTSSKAHSAAPTICSSTRV*LRAVSI
Trigger: AATGCTGACTGCCCTCAACAATACCCTGGTAGAGGA...GCAAATGGTGGGGGCAGCAGAGTGAGCTTTACTGCTGGTGTACATGAAGACAAG
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000118282.9
ENSMUST00000232179.2
CDS-3UTR CAA 90 bp AGTTACGAACTTGTCTTCATGTACACCAGCAGTAAAGCTCACTCTGCTGCCCCCGGGAGCTGTGTGTTCTaGAAGGTTCGAGCCAGAACA +
Preference number: 5 (lower is better)
Translates to: SYELVFMYTSSKAHSAAPGSCVF*KVRART
Trigger: TGTTCTGGCTCGAACCTTCAAGAACACACAGCTCCC...GGGGGCAGCAGAGTGAGCTTTACTGCTGGTGTACATGAAGACAAGTTCGTAACT
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000118282.9
ENSMUST00000232179.2
CDS-3UTR CAA 90 bp GTTACGAACTTGTCTTCATGTACACCAGCAGTAAAGCTCACTCTGCTGCCCCCAGGGAGCTGTGTGTTCTaGAAGGTTCGAGCCAGAACA +
Preference number: 5 (lower is better)
Translates to: VTNLSSCTPAVKLTLLPPGSCVF*KVRART
Trigger: TGTTCTGGCTCGAACCTTCAAGAACACACAGCTCCC...TGGGGGCAGCAGAGTGAGCTTTACTGCTGGTGTACATGAAGACAAGTTCGTAAC
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000118282.9
ENSMUST00000232179.2
CDS-3UTR CAA 90 bp TACAGGTTAGGCACATGTTCTCCCACTGAGCCACACTCCAGCCCTACCTACATTAGCTGTCTCCTTTCCTaGCCATCAGAACCCACACAA +
Preference number: 5 (lower is better)
Translates to: YRLGTCSPTEPHSSPTYISCLLS*PSEPTQ
Trigger: TTGTGTGGGTTCTGATGGCAAGGAAAGGAGACAGCT...AATGTAGGTAGGGCTGGAGTGTGGCTCAGTGGGAGAACATGTGCCTAACCTGTA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000118282.9
CDS TCA 90 bp CTGTGCTTTTCTTATCTGAATAGATCTCTGCGTAGAGCAAGGCCGTaGAGTGAGCAGAGCAGGACTGAGCCACCTTCGCAACCTCAAGAT +
Preference number: 5 (lower is better)
Translates to: LCFSYLNRSLRRARP*SEQSRTEPPSQPQD
Trigger: ATCTTGAGGTTGCGAAGGTGGCTCAGTCCTGCTCTGCTCACTTCACGGCCTTGCTCTACGCAGAGATCTATTCAGATAAGAAAAGCACAG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000118282.9
ENSMUST00000232179.2
CDS GCA 90 bp GAATCCGAATTTGCAGGAGTTGCTGAGCGGCTTGCTTGGGAGGAATaGTTAAAACAACTAGTGAAAAATCCTCGGACGTGCGCAGACAGC +
Preference number: 5 (lower is better)
Translates to: ESEFAGVAERLAWEE*LKQLVKNPRTCADS
Trigger: GCTGTCTGCGCACGTCCGAGGATTTTTCACTAGTTGTTTTAAGCATTCCTCCCAAGCAAGCCGCTCAGCAACTCCTGCAAATTCGGATTC
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000118282.9
ENSMUST00000232179.2
CDS GCA 90 bp TGTTCAAAAGCCACTCCCAGGTCTATGTGCACAAGCTCTGCCGACTaGTCGTTTATCAAGATATTCTGTACGTGCCTGTCGCCAAGTCCA +
Preference number: 5 (lower is better)
Translates to: CSKATPRSMCTSSAD*SFIKIFCTCLSPSP
Trigger: TGGACTTGGCGACAGGCACGTACAGAATATCTTGATAAACGAGCAGTCGGCAGAGCTTGTGCACATAGACCTGGGAGTGGCTTTTGAACA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000118282.9
ENSMUST00000232179.2
CDS GCA 90 bp AGTAGTGTATTGCACATCTGGAAGACCTGCTGCATGACAGCATCTTaGCTCAGGTCATCACGGCCCAGATTTTCATACTCTCCTGTGGGA +
Preference number: 5 (lower is better)
Translates to: SSVLHIWKTCCMTAS*LRSSRPRFSYSPVG
Trigger: TCCCACAGGAGAGTATGAAAATCTGGGCCGTGATGACCTGAGGCAAGATGCTGTCATGCAGCAGGTCTTCCAGATGTGCAATACACTACT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000132249.2
CDS GCA 90 bp GTCTCAGTGTTTCTCTGCAGTAGTGTATTGCACATCTGGAAGACCTaGTGCATGACAGCATCTTGCCTCAGGTCATCACGGCCCAGATTT +
Preference number: 5 (lower is better)
Translates to: VSVFLCSSVLHIWKT*CMTASCLRSSRPRF
Trigger: AAATCTGGGCCGTGATGACCTGAGGCAAGATGCTGTCATGCAGCAGGTCTTCCAGATGTGCAATACACTACTGCAGAGAAACACTGAGAC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000132249.2
CDS-3UTR CAA 90 bp AGTTACGAACTTGTCTTCATGTACACCAGCAGTAAAGCTCACTCTGCTGCCCCCCGTTTTACAGACATCTaGGTCACGTCGGTGCAGAGA +
Preference number: 5 (lower is better)
Translates to: SYELVFMYTSSKAHSAAPRFTDI*VTSVQR
Trigger: TCTCTGCACCGACGTGACCAAGATGTCTGTAAAACG...GGGGGCAGCAGAGTGAGCTTTACTGCTGGTGTACATGAAGACAAGTTCGTAACT
50% GC, longest homopolymer 6 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000118282.9
ENSMUST00000232179.2
CDS-3UTR CAA 90 bp TACAGGTTAGGCACATGTTCTCCCACTGAGCCACACTCCAGCCCTACCTACATTTGCCCTGGCCTAGGTTaGTCACTATATGAAGGACAT +
Preference number: 5 (lower is better)
Translates to: YRLGTCSPTEPHSSPTYICPGLG*SLYEGH
Trigger: ATGTCCTTCATATAGTGACAAACCTAGGCCAGGGCA...AATGTAGGTAGGGCTGGAGTGTGGCTCAGTGGGAGAACATGTGCCTAACCTGTA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000118282.9
CDS-3UTR CAA 90 bp TCATGTACACCAGCAGTAAAGCTCACTCTGCTGCCCCCACCATTTGCAGTTCAGTGCCCTGGCCTAGGTTaGTCACTATATGAAGGACAT +
Preference number: 5 (lower is better)
Translates to: SCTPAVKLTLLPPPFAVQCPGLG*SLYEGH
Trigger: ATGTCCTTCATATAGTGACAAACCTAGGCCAGGGCA...CTGAACTGCAAATGGTGGGGGCAGCAGAGTGAGCTTTACTGCTGGTGTACATGA
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000118282.9
ENSMUST00000232179.2
CDS-3UTR CAA 90 bp AGTTACGAACTTGTCTTCATGTACACCAGCAGTAAAGCTCACTCTGCTGCCCCCCACCACAATGCCATCTaGTGGGTTATCTTGAGACGC +
Preference number: 5 (lower is better)
Translates to: SYELVFMYTSSKAHSAAPHHNAI*WVILRR
Trigger: GCGTCTCAAGATAACCCACAAGATGGCATTGTGGTG...GGGGGCAGCAGAGTGAGCTTTACTGCTGGTGTACATGAAGACAAGTTCGTAACT
50% GC, longest homopolymer 6 nt, total homopolymer stretches 6 nt.
Matches the following 2 transcripts:
ENSMUST00000118282.9
ENSMUST00000232179.2
CDS-3UTR CAA 90 bp TCATGTACACCAGCAGTAAAGCTCACTCTGCTGCCCCCACCATTTGCAGTTCAGTGGTTCACTGCCATCTaGGATAACTGCAACAAGCTG +
Preference number: 5 (lower is better)
Translates to: SCTPAVKLTLLPPPFAVQWFTAI*DNCNKL
Trigger: CAGCTTGTTGCAGTTATCCAAGATGGCAGTGAACCA...CTGAACTGCAAATGGTGGGGGCAGCAGAGTGAGCTTTACTGCTGGTGTACATGA
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000118282.9
ENSMUST00000232179.2
CDS-3UTR CAA 90 bp GTTACGAACTTGTCTTCATGTACACCAGCAGTAAAGCTCACTCTGCTGCCCCCAGAGTATCAGAGAACCTaGCCAACGAGAGAAAGGCCT +
Preference number: 5 (lower is better)
Translates to: VTNLSSCTPAVKLTLLPPEYQRT*PTRERP
Trigger: AGGCCTTTCTCTCGTTGGCAAGGTTCTCTGATACTC...TGGGGGCAGCAGAGTGAGCTTTACTGCTGGTGTACATGAAGACAAGTTCGTAAC
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000118282.9
ENSMUST00000232179.2
CDS-3UTR CAA 90 bp AGCTCACTCTGCTGCCCCCACCATTTGCAGTTCAGTGTGTATGCGGCGGTCTTGTTCTTCATCATGCCATaGACTTCAGAAACTCCAGAA +
Preference number: 5 (lower is better)
Translates to: SSLCCPHHLQFSVYAAVLFFIMP*TSETPE
Trigger: TTCTGGAGTTTCTGAAGTCAATGGCATGATGAAGAA...CAAGACCGCCGCATACACACTGAACTGCAAATGGTGGGGGCAGCAGAGTGAGCT
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000118282.9
ENSMUST00000232179.2
CDS-3UTR CAA 90 bp GTTACGAACTTGTCTTCATGTACACCAGCAGTAAAGCTCACTCTGCTGCCCCCACTCTGCAGTAGTGTATaGCACATCTGGAAGACCTGC +
Preference number: 5 (lower is better)
Translates to: VTNLSSCTPAVKLTLLPPLCSSV*HIWKTC
Trigger: GCAGGTCTTCCAGATGTGCAATACACTACTGCAGAG...TGGGGGCAGCAGAGTGAGCTTTACTGCTGGTGTACATGAAGACAAGTTCGTAAC
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000118282.9
ENSMUST00000232179.2
CDS TCA 90 bp CCCTTTAAGAGTATCGTAGACCTTGGTAGCAGTCTCTCTTTTCTGTaGCACGTAGCTGTCTCTCGTGCCCTCGTAGGCAAAGTAAGGAAG +
Preference number: 5 (lower is better)
Translates to: PFKSIVDLGSSLSFL*HVAVSRALVGKVRK
Trigger: CTTCCTTACTTTGCCTACGAGGGCACGAGAGACAGCTACGTGTCACAGAAAAGAGAGACTGCTACCAAGGTCTACGATACTCTTAAAGGG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000118282.9
ENSMUST00000232179.2
CDS GCA 90 bp TCAGGAAGTGTCCTTGAGCAATCCGTGTGCTCTCCATGTCCACACTaGCCTGGCCTAGGTTTGTCACTATATGAAGGACATTGCTTAGAA +
Preference number: 5 (lower is better)
Translates to: SGSVLEQSVCSPCPH*PGLGLSLYEGHCLE
Trigger: TTCTAAGCAATGTCCTTCATATAGTGACAAACCTAGGCCAGGGCAGTGTGGACATGGAGAGCACACGGATTGCTCAAGGACACTTCCTGA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000118282.9
ENSMUST00000232179.2
CDS GCA 90 bp AACAGAGAATTCAACGAGGTGTTTGGTGAGAATGTCCTTAGAGCATaGTCCTTGAGAGCGCTCCATTTCCTTCTGTACCAGGGTCTCCAG +
Preference number: 5 (lower is better)
Translates to: NREFNEVFGENVLRA*SLRALHFLLYQGLQ
Trigger: CTGGAGACCCTGGTACAGAAGGAAATGGAGCGCTCTCAAGGAGCATGCTCTAAGGACATTCTCACCAAACACCTCGTTGAATTCTCTGTT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000118282.9
ENSMUST00000232179.2
CDS GCA 90 bp TCAGTGTTTCTCTGCAGTAGTGTATTGCACATCTGGAAGACCTGCTaGATGACAGCATCTTGCCTCAGGTCATCACGGCCCAGATTTTCA +
Preference number: 5 (lower is better)
Translates to: SVFLCSSVLHIWKTC*MTASCLRSSRPRFS
Trigger: TGAAAATCTGGGCCGTGATGACCTGAGGCAAGATGCTGTCATGCAGCAGGTCTTCCAGATGTGCAATACACTACTGCAGAGAAACACTGA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000132249.2
CDS CCA 90 bp TGTTTCTTAGACACTGCAGAGCATTATACAACGATTCATGGTAACTaGTTCCTTCTACTTCTTGGCCGGCAGAAGCGCAGAGGCCCCACT +
Preference number: 5 (lower is better)
Translates to: CFLDTAEHYTTIHGN*FLLLLGRQKRRGPT
Trigger: AGTGGGGCCTCTGCGCTTCTGCCGGCCAAGAAGTAGAAGGAACCAGTTACCATGAATCGTTGTATAATGCTCTGCAGTGTCTAAGAAACA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000118282.9
ENSMUST00000232179.2
CDS-3UTR CAA 90 bp ACACCAGCAGTAAAGCTCACTCTGCTGCCCCCACCATTTGCAGTTCAGTGTGTAATTTGTCTCAGCTGCTaGTTCACAAATGGCCAGAAG +
Preference number: 5 (lower is better)
Translates to: TPAVKLTLLPPPFAVQCVICLSC*FTNGQK
Trigger: CTTCTGGCCATTTGTGAACAAGCAGCTGAGACAAAT...TACACACTGAACTGCAAATGGTGGGGGCAGCAGAGTGAGCTTTACTGCTGGTGT
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000118282.9
ENSMUST00000232179.2
CDS-3UTR CAA 90 bp CTGAGCCACACTCCAGCCCTACCTACATTCATTCTAATGAGGGATTCCCATGATCTTAGAGCATGCTCCTaGAGAGCGCTCCATTTCCTT +
Preference number: 5 (lower is better)
Translates to: LSHTPALPTFILMRDSHDLRACS*RALHFL
Trigger: AAGGAAATGGAGCGCTCTCAAGGAGCATGCTCTAAG...ATCATGGGAATCCCTCATTAGAATGAATGTAGGTAGGGCTGGAGTGTGGCTCAG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000118282.9
CDS-3UTR CAA 90 bp TCATGTACACCAGCAGTAAAGCTCACTCTGCTGCCCCCACCATTTGCAGTTCAGGACTCTGCTCCTTTTTaGCCCAGAATACTTGTGCTT +
Preference number: 5 (lower is better)
Translates to: SCTPAVKLTLLPPPFAVQDSAPF*PRILVL
Trigger: AAGCACAAGTATTCTGGGCAAAAAAGGAGCAGAGTC...CTGAACTGCAAATGGTGGGGGCAGCAGAGTGAGCTTTACTGCTGGTGTACATGA
49% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000118282.9
ENSMUST00000232179.2
CDS-3UTR CAA 90 bp TACAGGTTAGGCACATGTTCTCCCACTGAGCCACACTCCAGCCCTACCTACATTAGGCCCACTTCCTCTTaGGCTCTTTTTAAGAGAGTT +
Preference number: 5 (lower is better)
Translates to: YRLGTCSPTEPHSSPTYIRPTSS*ALFKRV
Trigger: AACTCTCTTAAAAAGAGCCAAAGAGGAAGTGGGCCT...AATGTAGGTAGGGCTGGAGTGTGGCTCAGTGGGAGAACATGTGCCTAACCTGTA
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000118282.9
CDS-3UTR CAA 90 bp TGTTCTCCCACTGAGCCACACTCCAGCCCTACCTACATTCATTCTAATGAGGGAGAAAGGGGAACCACCTaGTATGTGCAGATAGTCAGT +
Preference number: 5 (lower is better)
Translates to: CSPTEPHSSPTYIHSNEGERGTT*YVQIVS
Trigger: ACTGACTATCTGCACATACAAGGTGGTTCCCCTTTC...TCCCTCATTAGAATGAATGTAGGTAGGGCTGGAGTGTGGCTCAGTGGGAGAACA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000118282.9
CDS-3UTR CAA 90 bp AGTTACGAACTTGTCTTCATGTACACCAGCAGTAAAGCTCACTCTGCTGCCCCCGAAAGGGGAACCACCTaGTATGTGCAGATAGTCAGT +
Preference number: 5 (lower is better)
Translates to: SYELVFMYTSSKAHSAAPERGTT*YVQIVS
Trigger: ACTGACTATCTGCACATACAAGGTGGTTCCCCTTTC...GGGGGCAGCAGAGTGAGCTTTACTGCTGGTGTACATGAAGACAAGTTCGTAACT
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000118282.9
ENSMUST00000232179.2
CDS-3UTR CAA 90 bp TGTTCTCCCACTGAGCCACACTCCAGCCCTACCTACATTCATTCTAATGAGGGAGCCTTTCAGTTTCTCTaGCAGTCTCATCAAGACACG +
Preference number: 5 (lower is better)
Translates to: CSPTEPHSSPTYIHSNEGAFQFL*QSHQDT
Trigger: CGTGTCTTGATGAGACTGCAAGAGAAACTGAAAGGC...TCCCTCATTAGAATGAATGTAGGTAGGGCTGGAGTGTGGCTCAGTGGGAGAACA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000118282.9
CDS-3UTR CAA 90 bp AGTTACGAACTTGTCTTCATGTACACCAGCAGTAAAGCTCACTCTGCTGCCCCCGCCTTTCAGTTTCTCTaGCAGTCTCATCAAGACACG +
Preference number: 5 (lower is better)
Translates to: SYELVFMYTSSKAHSAAPAFQFL*QSHQDT
Trigger: CGTGTCTTGATGAGACTGCAAGAGAAACTGAAAGGC...GGGGGCAGCAGAGTGAGCTTTACTGCTGGTGTACATGAAGACAAGTTCGTAACT
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000118282.9
ENSMUST00000232179.2
CDS TCA 90 bp AATTCAACGAGGTGTTTGGTGAGAATGTCCTTAGAGCATGCTCCTTaGGAGCGCTCCATTTCCTTCTGTACCAGGGTCTCCAGAATGACT +
Preference number: 5 (lower is better)
Translates to: NSTRCLVRMSLEHAP*ERSISFCTRVSRMT
Trigger: AGTCATTCTGGAGACCCTGGTACAGAAGGAAATGGAGCGCTCTCAAGGAGCATGCTCTAAGGACATTCTCACCAAACACCTCGTTGAATT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000118282.9
ENSMUST00000232179.2
CDS TCA 90 bp TGTTTCTCTGCAGTAGTGTATTGCACATCTGGAAGACCTGCTGCATaGCAGCATCTTGCCTCAGGTCATCACGGCCCAGATTTTCATACT +
Preference number: 5 (lower is better)
Translates to: CFSAVVYCTSGRPAA*QHLASGHHGPDFHT
Trigger: AGTATGAAAATCTGGGCCGTGATGACCTGAGGCAAGATGCTGTCATGCAGCAGGTCTTCCAGATGTGCAATACACTACTGCAGAGAAACA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000132249.2
CDS CCA 90 bp TCTGACTCTGAATCCGAATTTGCAGGAGTTGCTGAGCGGCTTGCTTaGGAGGAATGCTTAAAACAACTAGTGAAAAATCCTCGGACGTGC +
Preference number: 5 (lower is better)
Translates to: SDSESEFAGVAERLA*EECLKQLVKNPRTC
Trigger: GCACGTCCGAGGATTTTTCACTAGTTGTTTTAAGCATTCCTCCCAAGCAAGCCGCTCAGCAACTCCTGCAAATTCGGATTCAGAGTCAGA
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000118282.9
ENSMUST00000232179.2
CDS-3UTR CAA 90 bp GTTACGAACTTGTCTTCATGTACACCAGCAGTAAAGCTCACTCTGCTGCCCCCAAGGAGCTCTGGCTCCTaGTGGATGATGGATATAAAT +
Preference number: 5 (lower is better)
Translates to: VTNLSSCTPAVKLTLLPPRSSGS*WMMDIN
Trigger: ATTTATATCCATCATCCACAAGGAGCCAGAGCTCCT...TGGGGGCAGCAGAGTGAGCTTTACTGCTGGTGTACATGAAGACAAGTTCGTAAC
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000118282.9
ENSMUST00000232179.2
CDS-3UTR CAA 90 bp TCATGTACACCAGCAGTAAAGCTCACTCTGCTGCCCCCACCATTTGCAGTTCAGGAGAGCTTTCCAGGTTaGATTTCTTGCCTTGACATA +
Preference number: 5 (lower is better)
Translates to: SCTPAVKLTLLPPPFAVQESFPG*ISCLDI
Trigger: TATGTCAAGGCAAGAAATCAAACCTGGAAAGCTCTC...CTGAACTGCAAATGGTGGGGGCAGCAGAGTGAGCTTTACTGCTGGTGTACATGA
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000118282.9
ENSMUST00000232179.2
CDS-3UTR CAA 90 bp TGTTCTCCCACTGAGCCACACTCCAGCCCTACCTACATTCATTCTAATGAGGGAAATTACTCTGAAGAATaGGAGGCAGCTCTGTGCTGT +
Preference number: 5 (lower is better)
Translates to: CSPTEPHSSPTYIHSNEGNYSEE*EAALCC
Trigger: ACAGCACAGAGCTGCCTCCAATTCTTCAGAGTAATT...TCCCTCATTAGAATGAATGTAGGTAGGGCTGGAGTGTGGCTCAGTGGGAGAACA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000118282.9
CDS-3UTR CAA 90 bp AGTTACGAACTTGTCTTCATGTACACCAGCAGTAAAGCTCACTCTGCTGCCCCCAATTACTCTGAAGAATaGGAGGCAGCTCTGTGCTGT +
Preference number: 5 (lower is better)
Translates to: SYELVFMYTSSKAHSAAPNYSEE*EAALCC
Trigger: ACAGCACAGAGCTGCCTCCAATTCTTCAGAGTAATT...GGGGGCAGCAGAGTGAGCTTTACTGCTGGTGTACATGAAGACAAGTTCGTAACT
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000118282.9
ENSMUST00000232179.2
CDS-3UTR CAA 90 bp GTTACGAACTTGTCTTCATGTACACCAGCAGTAAAGCTCACTCTGCTGCCCCCAATTTGTCTCAGCTGCTaGTTCACAAATGGCCAGAAG +
Preference number: 5 (lower is better)
Translates to: VTNLSSCTPAVKLTLLPPICLSC*FTNGQK
Trigger: CTTCTGGCCATTTGTGAACAAGCAGCTGAGACAAAT...TGGGGGCAGCAGAGTGAGCTTTACTGCTGGTGTACATGAAGACAAGTTCGTAAC
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000118282.9
ENSMUST00000232179.2
CDS-3UTR CAA 90 bp TACAGGTTAGGCACATGTTCTCCCACTGAGCCACACTCCAGCCCTACCTACATTTTTATGTTGCTCCAGTaGTCTTCGAAGATCCTTCAG +
Preference number: 5 (lower is better)
Translates to: YRLGTCSPTEPHSSPTYIFMLLQ*SSKILQ
Trigger: CTGAAGGATCTTCGAAGACAACTGGAGCAACATAAA...AATGTAGGTAGGGCTGGAGTGTGGCTCAGTGGGAGAACATGTGCCTAACCTGTA
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000118282.9
CDS-3UTR CAA 90 bp CTTGTCTTCATGTACACCAGCAGTAAAGCTCACTCTGCTGCCCCCACCATTTGCCATCTGATCTTTATGTaGCTCCAGTTGTCTTCGAAG +
Preference number: 5 (lower is better)
Translates to: LVFMYTSSKAHSAAPTICHLIFM*LQLSSK
Trigger: CTTCGAAGACAACTGGAGCAACATAAAGATCAGATG...GCAAATGGTGGGGGCAGCAGAGTGAGCTTTACTGCTGGTGTACATGAAGACAAG
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000118282.9
ENSMUST00000232179.2
CDS-3UTR CAA 90 bp GCAGAAGTTACGAACTTGTCTTCATGTACACCAGCAGTAAAGCTCACTCTGCTGCACCACAATGCCATCTaGTGGGTTATCTTGAGACGC +
Preference number: 5 (lower is better)
Translates to: AEVTNLSSCTPAVKLTLLHHNAI*WVILRR
Trigger: GCGTCTCAAGATAACCCACAAGATGGCATTGTGGTG...CAGCAGAGTGAGCTTTACTGCTGGTGTACATGAAGACAAGTTCGTAACTTCTGC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000118282.9
ENSMUST00000232179.2
CDS-3UTR CAA 90 bp GCAGAAGTTACGAACTTGTCTTCATGTACACCAGCAGTAAAGCTCACTCTGCTGCTTAGAGCATGCTCCTaGAGAGCGCTCCATTTCCTT +
Preference number: 5 (lower is better)
Translates to: AEVTNLSSCTPAVKLTLLLRACS*RALHFL
Trigger: AAGGAAATGGAGCGCTCTCAAGGAGCATGCTCTAAG...CAGCAGAGTGAGCTTTACTGCTGGTGTACATGAAGACAAGTTCGTAACTTCTGC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000118282.9
ENSMUST00000232179.2
CDS-3UTR CAA 90 bp TCATGTACACCAGCAGTAAAGCTCACTCTGCTGCCCCCACCATTTGCAGTTCAGAATTCAACGAGGTGTTaGGTGAGAATGTCCTTAGAG +
Preference number: 5 (lower is better)
Translates to: SCTPAVKLTLLPPPFAVQNSTRC*VRMSLE
Trigger: CTCTAAGGACATTCTCACCAAACACCTCGTTGAATT...CTGAACTGCAAATGGTGGGGGCAGCAGAGTGAGCTTTACTGCTGGTGTACATGA
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000118282.9
ENSMUST00000232179.2
CDS-3UTR CAA 90 bp TCATGTACACCAGCAGTAAAGCTCACTCTGCTGCCCCCACCATTTGCAGTTCAGTTTTGCCCAGAATACTaGTGCTTCTTCCAAATGCCA +
Preference number: 5 (lower is better)
Translates to: SCTPAVKLTLLPPPFAVQFCPEY*CFFQMP
Trigger: TGGCATTTGGAAGAAGCACAAGTATTCTGGGCAAAA...CTGAACTGCAAATGGTGGGGGCAGCAGAGTGAGCTTTACTGCTGGTGTACATGA
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000118282.9
ENSMUST00000232179.2
CDS-3UTR CAA 90 bp TACAGGTTAGGCACATGTTCTCCCACTGAGCCACACTCCAGCCCTACCTACATTTTCGACTCCTTCTTGTaGTCTCTGGTTTGCTCAAAA +
Preference number: 5 (lower is better)
Translates to: YRLGTCSPTEPHSSPTYIFDSFL*SLVCSK
Trigger: TTTTGAGCAAACCAGAGACAACAAGAAGGAGTCGAA...AATGTAGGTAGGGCTGGAGTGTGGCTCAGTGGGAGAACATGTGCCTAACCTGTA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000118282.9
CDS TCA 90 bp TTAAGGCATCGTAACACATATGGGATGCGTTCTCCACGTCGCTGTTaGGGCAGAAGCTGGTACAGTATCAGTATTAATGGAGACAGCTCA +
Preference number: 5 (lower is better)
Translates to: LRHRNTYGMRSPRRC*GRSWYSISINGDSS
Trigger: TGAGCTGTCTCCATTAATACTGATACTGTACCAGCTTCTGCCTCAACAGCGACGTGGAGAACGCATCCCATATGTGTTACGATGCCTTAA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000118282.9
ENSMUST00000232179.2
CDS GCA 90 bp GCTTGGGAGGAATGCTTAAAACAACTAGTGAAAAATCCTCGGACGTaGGCAGACAGCAGAGTTCTCCACGATTCATGTGTATCTTGCAGT +
Preference number: 5 (lower is better)
Translates to: AWEECLKQLVKNPRT*ADSRVLHDSCVSCS
Trigger: ACTGCAAGATACACATGAATCGTGGAGAACTCTGCTGTCTGCGCACGTCCGAGGATTTTTCACTAGTTGTTTTAAGCATTCCTCCCAAGC
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000118282.9
ENSMUST00000232179.2
CDS GCA 90 bp ACTCTGGTCAGTATCACTAAGACTTTGTTTGCATTCTTGATCATCTaGATTGGGGGTGGAATGGAGGTCGGACTCATCTTCTGGTCTCTG +
Preference number: 5 (lower is better)
Translates to: TLVSITKTLFAFLII*IGGGMEVGLIFWSL
Trigger: CAGAGACCAGAAGATGAGTCCGACCTCCATTCCACCCCCAATGCAGATGATCAAGAATGCAAACAAAGTCTTAGTGATACTGACCAGAGT
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000118282.9
ENSMUST00000232179.2
CDS CCA 90 bp GAAGATGATCTTGTTTGGACAGGTAGTCGGCAGCTAAAGGACTCATaGCACCAACAGCATTCTGGTTCTCTCCATAATCATTTGCATCGC +
Preference number: 5 (lower is better)
Translates to: EDDLVWTGSRQLKDS*HQQHSGSLHNHLHR
Trigger: GCGATGCAAATGATTATGGAGAGAACCAGAATGCTGTTGGTGCCATGAGTCCTTTAGCTGCCGACTACCTGTCCAAACAAGATCATCTTC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000118282.9
ENSMUST00000232179.2
CDS CCA 90 bp AGGCTTTGGTATAGGACACATCTTTGTTATGCTGGACAGCTATGGTaGAGAAATCCAGAGGACCTATTTCTCCCAAACACCTTCCGACAG +
Preference number: 5 (lower is better)
Translates to: RLWYRTHLCYAGQLW*RNPEDLFLPNTFRQ
Trigger: CTGTCGGAAGGTGTTTGGGAGAAATAGGTCCTCTGGATTTCTCCACCATAGCTGTCCAGCATAACAAAGATGTGTCCTATACCAAAGCCT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000118282.9
ENSMUST00000232179.2
CDS CCA 90 bp CGTAGGCTTTGGTATAGGACACATCTTTGTTATGCTGGACAGCTATaGTGGAGAAATCCAGAGGACCTATTTCTCCCAAACACCTTCCGA +
Preference number: 5 (lower is better)
Translates to: RRLWYRTHLCYAGQL*WRNPEDLFLPNTFR
Trigger: TCGGAAGGTGTTTGGGAGAAATAGGTCCTCTGGATTTCTCCACCATAGCTGTCCAGCATAACAAAGATGTGTCCTATACCAAAGCCTACG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000118282.9
ENSMUST00000232179.2
CDS CCA 90 bp TCAAGGTCCACTGAAGTTCTCTGTCTTCAGGTAACCCGTAGGCTTTaGTATAGGACACATCTTTGTTATGCTGGACAGCTATGGTGGAGA +
Preference number: 5 (lower is better)
Translates to: SRSTEVLCLQVTRRL*YRTHLCYAGQLWWR
Trigger: TCTCCACCATAGCTGTCCAGCATAACAAAGATGTGTCCTATACCAAAGCCTACGGGTTACCTGAAGACAGAGAACTTCAGTGGACCTTGA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000118282.9
ENSMUST00000232179.2
CDS-3UTR CAA 90 bp GTTACGAACTTGTCTTCATGTACACCAGCAGTAAAGCTCACTCTGCTGCCCCCATCTTTGAGTAGTATGTaGCTACAGTCAGCTCCATAC +
Preference number: 5 (lower is better)
Translates to: VTNLSSCTPAVKLTLLPPSLSSM*LQSAPY
Trigger: GTATGGAGCTGACTGTAGCAACATACTACTCAAAGA...TGGGGGCAGCAGAGTGAGCTTTACTGCTGGTGTACATGAAGACAAGTTCGTAAC
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000118282.9
ENSMUST00000232179.2
CDS-3UTR CAA 90 bp CTGAGCCACACTCCAGCCCTACCTACATTCATTCTAATGAGGGATTCCCATGATTTGACAGCCAGAGACTaGAGGAAAATGTTAAGGGCT +
Preference number: 5 (lower is better)
Translates to: LSHTPALPTFILMRDSHDLTARD*RKMLRA
Trigger: AGCCCTTAACATTTTCCTCAAGTCTCTGGCTGTCAA...ATCATGGGAATCCCTCATTAGAATGAATGTAGGTAGGGCTGGAGTGTGGCTCAG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000118282.9
CDS-3UTR CAA 90 bp CTTGTCTTCATGTACACCAGCAGTAAAGCTCACTCTGCTGCCCCCACCATTTGCTTGTGTCACATAAGATaGAGAAATCTCCACGGATCT +
Preference number: 5 (lower is better)
Translates to: LVFMYTSSKAHSAAPTICLCHIR*RNLHGS
Trigger: AGATCCGTGGAGATTTCTCAATCTTATGTGACACAA...GCAAATGGTGGGGGCAGCAGAGTGAGCTTTACTGCTGGTGTACATGAAGACAAG
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000118282.9
ENSMUST00000232179.2
CDS-3UTR CAA 90 bp AGTTACGAACTTGTCTTCATGTACACCAGCAGTAAAGCTCACTCTGCTGCCCCCGAGAGCTTTCCAGGTTaGATTTCTTGCCTTGACATA +
Preference number: 5 (lower is better)
Translates to: SYELVFMYTSSKAHSAAPESFPG*ISCLDI
Trigger: TATGTCAAGGCAAGAAATCAAACCTGGAAAGCTCTC...GGGGGCAGCAGAGTGAGCTTTACTGCTGGTGTACATGAAGACAAGTTCGTAACT
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000118282.9
ENSMUST00000232179.2
CDS-3UTR CAA 90 bp ACACCAGCAGTAAAGCTCACTCTGCTGCCCCCACCATTTGCAGTTCAGTGTGTAAGAGCCACCTCATTATaGACTCCTTTACAGAAAAAC +
Preference number: 5 (lower is better)
Translates to: TPAVKLTLLPPPFAVQCVRATSL*TPLQKN
Trigger: GTTTTTCTGTAAAGGAGTCAATAATGAGGTGGCTCT...TACACACTGAACTGCAAATGGTGGGGGCAGCAGAGTGAGCTTTACTGCTGGTGT
47% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000118282.9
ENSMUST00000232179.2
CDS-3UTR CAA 90 bp TCATGTACACCAGCAGTAAAGCTCACTCTGCTGCCCCCACCATTTGCAGTTCAGGCTATATTCAGTATCTaGAAGGTTCAGCCATTCCAA +
Preference number: 5 (lower is better)
Translates to: SCTPAVKLTLLPPPFAVQAIFSI*KVQPFQ
Trigger: TTGGAATGGCTGAACCTTCAAGATACTGAATATAGC...CTGAACTGCAAATGGTGGGGGCAGCAGAGTGAGCTTTACTGCTGGTGTACATGA
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000118282.9
ENSMUST00000232179.2
CDS-3UTR CAA 90 bp ACACCAGCAGTAAAGCTCACTCTGCTGCCCCCACCATTTGCAGTTCAGTGTGTAGCTATATTCAGTATCTaGAAGGTTCAGCCATTCCAA +
Preference number: 5 (lower is better)
Translates to: TPAVKLTLLPPPFAVQCVAIFSI*KVQPFQ
Trigger: TTGGAATGGCTGAACCTTCAAGATACTGAATATAGC...TACACACTGAACTGCAAATGGTGGGGGCAGCAGAGTGAGCTTTACTGCTGGTGT
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000118282.9
ENSMUST00000232179.2
CDS-3UTR CAA 90 bp GTTACGAACTTGTCTTCATGTACACCAGCAGTAAAGCTCACTCTGCTGCCCCCACATCTGATCTTTATGTaGCTCCAGTTGTCTTCGAAG +
Preference number: 5 (lower is better)
Translates to: VTNLSSCTPAVKLTLLPPHLIFM*LQLSSK
Trigger: CTTCGAAGACAACTGGAGCAACATAAAGATCAGATG...TGGGGGCAGCAGAGTGAGCTTTACTGCTGGTGTACATGAAGACAAGTTCGTAAC
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000118282.9
ENSMUST00000232179.2
CDS-3UTR CAA 90 bp GTTCTCCCACTGAGCCACACTCCAGCCCTACCTACATTCATTCTAATGAGGGATTTTTGCCCAGAATACTaGTGCTTCTTCCAAATGCCA +
Preference number: 5 (lower is better)
Translates to: VLPLSHTPALPTFILMRDFCPEY*CFFQMP
Trigger: TGGCATTTGGAAGAAGCACAAGTATTCTGGGCAAAA...ATCCCTCATTAGAATGAATGTAGGTAGGGCTGGAGTGTGGCTCAGTGGGAGAAC
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000118282.9
CDS-3UTR CAA 90 bp ACACCAGCAGTAAAGCTCACTCTGCTGCCCCCACCATTTGCAGTTCAGTGTGTATTCTTGATCATCTGCTaGAGAATACTCAGAGCAAGA +
Preference number: 5 (lower is better)
Translates to: TPAVKLTLLPPPFAVQCVFLIIC*RILRAR
Trigger: TCTTGCTCTGAGTATTCTCAAGCAGATGATCAAGAA...TACACACTGAACTGCAAATGGTGGGGGCAGCAGAGTGAGCTTTACTGCTGGTGT
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000118282.9
ENSMUST00000232179.2
CDS-3UTR CAA 90 bp GTTCTCCCACTGAGCCACACTCCAGCCCTACCTACATTCATTCTAATGAGGGATCTGGAGTCCAACTTCTaGATCATCTGCTTGAGAATA +
Preference number: 5 (lower is better)
Translates to: VLPLSHTPALPTFILMRDLESNF*IICLRI
Trigger: TATTCTCAAGCAGATGATCAAGAAGTTGGACTCCAG...ATCCCTCATTAGAATGAATGTAGGTAGGGCTGGAGTGTGGCTCAGTGGGAGAAC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000118282.9
CDS-3UTR CAA 90 bp AGTTACGAACTTGTCTTCATGTACACCAGCAGTAAAGCTCACTCTGCTGCCCCCCTGGAGTCCAACTTCTaGATCATCTGCTTGAGAATA +
Preference number: 5 (lower is better)
Translates to: SYELVFMYTSSKAHSAAPLESNF*IICLRI
Trigger: TATTCTCAAGCAGATGATCAAGAAGTTGGACTCCAG...GGGGGCAGCAGAGTGAGCTTTACTGCTGGTGTACATGAAGACAAGTTCGTAACT
47% GC, longest homopolymer 6 nt, total homopolymer stretches 6 nt.
Matches the following 2 transcripts:
ENSMUST00000118282.9
ENSMUST00000232179.2
CDS-3UTR CAA 90 bp GTTCTCCCACTGAGCCACACTCCAGCCCTACCTACATTCATTCTAATGAGGGATCATTCGAGCAGCCAATaGATACATGAGAGGCAAAAA +
Preference number: 5 (lower is better)
Translates to: VLPLSHTPALPTFILMRDHSSSQ*IHERQK
Trigger: TTTTTGCCTCTCATGTATCAATTGGCTGCTCGAATG...ATCCCTCATTAGAATGAATGTAGGTAGGGCTGGAGTGTGGCTCAGTGGGAGAAC
47% GC, longest homopolymer 5 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000118282.9
CDS-3UTR CAA 90 bp GTTACGAACTTGTCTTCATGTACACCAGCAGTAAAGCTCACTCTGCTGCCCCCACATTCGAGCAGCCAATaGATACATGAGAGGCAAAAA +
Preference number: 5 (lower is better)
Translates to: VTNLSSCTPAVKLTLLPPHSSSQ*IHERQK
Trigger: TTTTTGCCTCTCATGTATCAATTGGCTGCTCGAATG...TGGGGGCAGCAGAGTGAGCTTTACTGCTGGTGTACATGAAGACAAGTTCGTAAC
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000118282.9
ENSMUST00000232179.2
CDS-3UTR CAA 90 bp CACACACACACACAGTCTGGAAAACATGCTTTAATTAAAGGTTGTTTTAGAGCAAGGCCTCCCGTCATTTaGGTCCCCATTCGAGCAGCC +
Preference number: 5 (lower is better)
Translates to: HTHTQSGKHALIKGCFRARPPVI*VPIRAA
Trigger: GGCTGCTCGAATGGGGACCAAAATGACGGGAGGCCT...TGCTCTAAAACAACCTTTAATTAAAGCATGTTTTCCAGACTGTGTGTGTGTGTG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000118282.9
ENSMUST00000232179.2
CDS-3UTR CAA 90 bp CTTGTCTTCATGTACACCAGCAGTAAAGCTCACTCTGCTGCCCCCACCATTTGCAACTGGTTCAAAGTTTaGGCAAATCGTCATGAAGGT +
Preference number: 5 (lower is better)
Translates to: LVFMYTSSKAHSAAPTICNWFKV*ANRHEG
Trigger: ACCTTCATGACGATTTGCCAAAACTTTGAACCAGTT...GCAAATGGTGGGGGCAGCAGAGTGAGCTTTACTGCTGGTGTACATGAAGACAAG
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000118282.9
ENSMUST00000232179.2
CDS TCA 90 bp AGCTTCTGGAGAAATCGCCTTGTCTCATATCCTGAAATAATCTGTTaGCTGACCCTGCAGCCAACATCCGAACTTGATGATGATCGTCAG +
Preference number: 5 (lower is better)
Translates to: SFWRNRLVSYPEIIC*LTLQPTSELDDDRQ
Trigger: CTGACGATCATCATCAAGTTCGGATGTTGGCTGCAGGGTCAGTCAACAGATTATTTCAGGATATGAGACAAGGCGATTTCTCCAGAAGCT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000118282.9
ENSMUST00000232179.2
CDS GCA 90 bp TCTGCATTGGGGGTGGAATGGAGGTCGGACTCATCTTCTGGTCTCTaGTGTAGATACAGAGCTTTTAAAGGATTCATAGTCCAATCAAAG +
Preference number: 5 (lower is better)
Translates to: SALGVEWRSDSSSGL*CRYRAFKGFIVQSK
Trigger: CTTTGATTGGACTATGAATCCTTTAAAAGCTCTGTATCTACAGCAGAGACCAGAAGATGAGTCCGACCTCCATTCCACCCCCAATGCAGA
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000118282.9
ENSMUST00000232179.2
CDS CCA 90 bp TATGTTGCTCCAGTTGTCTTCGAAGATCCTTCAGTCCTTCAAGCCTaGTCAGCGGAAGTGGATTGTAAGCACTTACTGAGAGAAAATGGT +
Preference number: 5 (lower is better)
Translates to: YVAPVVFEDPSVLQA*SAEVDCKHLLRENG
Trigger: ACCATTTTCTCTCAGTAAGTGCTTACAATCCACTTCCGCTGACCAGGCTTGAAGGACTGAAGGATCTTCGAAGACAACTGGAGCAACATA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000118282.9
ENSMUST00000232179.2
CDS CCA 90 bp GGCCACACTGCGTGTATATGCCAATCGTTTCTCAAACCAAACAGCTaGGTCCAAGAATTTTTCCATGCAGAAGTAACGGAAAACTGGTTC +
Preference number: 5 (lower is better)
Translates to: GHTACICQSFLKPNS*VQEFFHAEVTENWF
Trigger: GAACCAGTTTTCCGTTACTTCTGCATGGAAAAATTCTTGGACCCAGCTGTTTGGTTTGAGAAACGATTGGCATATACACGCAGTGTGGCC
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000118282.9
ENSMUST00000232179.2
CDS-3UTR CAA 90 bp CTTGTCTTCATGTACACCAGCAGTAAAGCTCACTCTGCTGCCCCCACCATTTGCCTGATACATTTGATTTaGCTGTTCTCAGACTTTCCA +
Preference number: 5 (lower is better)
Translates to: LVFMYTSSKAHSAAPTICLIHLI*LFSDFP
Trigger: TGGAAAGTCTGAGAACAGCAAAATCAAATGTATCAG...GCAAATGGTGGGGGCAGCAGAGTGAGCTTTACTGCTGGTGTACATGAAGACAAG
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000118282.9
ENSMUST00000232179.2
CDS-3UTR CAA 90 bp GTTCTCCCACTGAGCCACACTCCAGCCCTACCTACATTCATTCTAATGAGGGATCATTGCATCAGAGACTaGGCTTTCTGGAATAATTCT +
Preference number: 5 (lower is better)
Translates to: VLPLSHTPALPTFILMRDHCIRD*AFWNNS
Trigger: AGAATTATTCCAGAAAGCCAAGTCTCTGATGCAATG...ATCCCTCATTAGAATGAATGTAGGTAGGGCTGGAGTGTGGCTCAGTGGGAGAAC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000118282.9
CDS-3UTR CAA 90 bp GCAGAAGTTACGAACTTGTCTTCATGTACACCAGCAGTAAAGCTCACTCTGCTGACTTTCTCCTGCACATaGCATCAGAGACTTGGCTTT +
Preference number: 5 (lower is better)
Translates to: AEVTNLSSCTPAVKLTLLTFSCT*HQRLGF
Trigger: AAAGCCAAGTCTCTGATGCAATGTGCAGGAGAAAGT...CAGCAGAGTGAGCTTTACTGCTGGTGTACATGAAGACAAGTTCGTAACTTCTGC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000118282.9
ENSMUST00000232179.2
CDS-3UTR CAA 90 bp TACAGGTTAGGCACATGTTCTCCCACTGAGCCACACTCCAGCCCTACCTACATTCACATTTCTTTTCCTTaGTCAAATGCCAAAATGCTC +
Preference number: 5 (lower is better)
Translates to: YRLGTCSPTEPHSSPTYIHISFP*SNAKML
Trigger: GAGCATTTTGGCATTTGACAAAGGAAAAGAAATGTG...AATGTAGGTAGGGCTGGAGTGTGGCTCAGTGGGAGAACATGTGCCTAACCTGTA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000118282.9
CDS-3UTR CAA 90 bp GTTACGAACTTGTCTTCATGTACACCAGCAGTAAAGCTCACTCTGCTGCCCCCATTTTCCTTCACAGACTaGCATAAAGCAAACAAAGCC +
Preference number: 5 (lower is better)
Translates to: VTNLSSCTPAVKLTLLPPFSFTD*HKANKA
Trigger: GGCTTTGTTTGCTTTATGCAAGTCTGTGAAGGAAAA...TGGGGGCAGCAGAGTGAGCTTTACTGCTGGTGTACATGAAGACAAGTTCGTAAC
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000118282.9
ENSMUST00000232179.2
CDS-3UTR CAA 90 bp AGTTACGAACTTGTCTTCATGTACACCAGCAGTAAAGCTCACTCTGCTGCCCCCTTCTTGATCATCTGCTaGAGAATACTCAGAGCAAGA +
Preference number: 5 (lower is better)
Translates to: SYELVFMYTSSKAHSAAPFLIIC*RILRAR
Trigger: TCTTGCTCTGAGTATTCTCAAGCAGATGATCAAGAA...GGGGGCAGCAGAGTGAGCTTTACTGCTGGTGTACATGAAGACAAGTTCGTAACT
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000118282.9
ENSMUST00000232179.2
CDS-3UTR CAA 90 bp CACACACACACACAGTCTGGAAAACATGCTTTAATTAAAGGTTGTTTTAGAGCACTGCATGACAGCATCTaGCCTCAGGTCATCACGGCC +
Preference number: 5 (lower is better)
Translates to: HTHTQSGKHALIKGCFRALHDSI*PQVITA
Trigger: GGCCGTGATGACCTGAGGCAAGATGCTGTCATGCAG...TGCTCTAAAACAACCTTTAATTAAAGCATGTTTTCCAGACTGTGTGTGTGTGTG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000118282.9
ENSMUST00000232179.2
CDS GCA 90 bp GATAATGGTTGCAGAAGTTCAACAACATCTTCCATTGGCAATGAGTaGTCGTTTCCAGGGAGATCCTTCAGGAGCACTAAGTACATATGC +
Preference number: 5 (lower is better)
Translates to: DNGCRSSTTSSIGNE*SFPGRSFRSTKYIC
Trigger: GCATATGTACTTAGTGCTCCTGAAGGATCTCCCTGGAAACGAGCACTCATTGCCAATGGAAGATGTTGTTGAACTTCTGCAACCATTATC
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000118282.9
ENSMUST00000232179.2
CDS GCA 90 bp CACCATCTTACATCGCTTACTTCTGATGGAGTGGATGATTCTGGTTaGAGCCTCTGTTCGATCCTCATCAAGGTGAGAGTTTTCTTTAGA +
Preference number: 5 (lower is better)
Translates to: HHLTSLTSDGVDDSG*SLCSILIKVRVFFR
Trigger: TCTAAAGAAAACTCTCACCTTGATGAGGATCGAACAGAGGCTGCAACCAGAATCATCCACTCCATCAGAAGTAAGCGATGTAAGATGGTG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000118282.9
ENSMUST00000232179.2
CDS GCA 90 bp AAGGATGTAACCGACGATAGAAGATGTGGCCACACTGCGTGTATATaGCAATCGTTTCTCAAACCAAACAGCTGGGTCCAAGAATTTTTC +
Preference number: 5 (lower is better)
Translates to: KDVTDDRRCGHTACI*QSFLKPNSWVQEFF
Trigger: GAAAAATTCTTGGACCCAGCTGTTTGGTTTGAGAAACGATTGGCATATACACGCAGTGTGGCCACATCTTCTATCGTCGGTTACATCCTT
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000118282.9
ENSMUST00000232179.2
CDS-3UTR CAA 90 bp ATTCACTTAAGTAATTCCTGTCCAAATATGGTGGGTGAGATGTCATTTCTGAAGTTCTCCACGTCGCTGTaGAGGCAGAAGCTGGTACAG +
Preference number: 5 (lower is better)
Translates to: IHLSNSCPNMVGEMSFLKFSTSL*RQKLVQ
Trigger: CTGTACCAGCTTCTGCCTCAACAGCGACGTGGAGAA...CTTCAGAAATGACATCTCACCCACCATATTTGGACAGGAATTACTTAAGTGAAT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000118282.9
ENSMUST00000232179.2
CDS-3UTR CAA 90 bp GCAGAAGTTACGAACTTGTCTTCATGTACACCAGCAGTAAAGCTCACTCTGCTGGTCCAATACCTGTTCTaGAACTTCCTGATAATCCAC +
Preference number: 5 (lower is better)
Translates to: AEVTNLSSCTPAVKLTLLVQYLF*NFLIIH
Trigger: GTGGATTATCAGGAAGTTCAAGAACAGGTATTGGAC...CAGCAGAGTGAGCTTTACTGCTGGTGTACATGAAGACAAGTTCGTAACTTCTGC
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000118282.9
ENSMUST00000232179.2
CDS-3UTR CAA 90 bp GCAGAAGTTACGAACTTGTCTTCATGTACACCAGCAGTAAAGCTCACTCTGCTGTTTATGTTGCTCCAGTaGTCTTCGAAGATCCTTCAG +
Preference number: 5 (lower is better)
Translates to: AEVTNLSSCTPAVKLTLLFMLLQ*SSKILQ
Trigger: CTGAAGGATCTTCGAAGACAACTGGAGCAACATAAA...CAGCAGAGTGAGCTTTACTGCTGGTGTACATGAAGACAAGTTCGTAACTTCTGC
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000118282.9
ENSMUST00000232179.2
CDS-3UTR CAA 90 bp TTAAGTAATTCCTGTCCAAATATGGTGGGTGAGATGTCATTTCTGAAGTTCGAGACTCTGAATCCGAATTaGCAGGAGTTGCTGAGCGGC +
Preference number: 5 (lower is better)
Translates to: LSNSCPNMVGEMSFLKFETLNPN*QELLSG
Trigger: GCCGCTCAGCAACTCCTGCAAATTCGGATTCAGAGT...CTCGAACTTCAGAAATGACATCTCACCCACCATATTTGGACAGGAATTACTTAA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000118282.9
ENSMUST00000232179.2
CDS-3UTR CAA 90 bp GCAGAAGTTACGAACTTGTCTTCATGTACACCAGCAGTAAAGCTCACTCTGCTGAATTCAACGAGGTGTTaGGTGAGAATGTCCTTAGAG +
Preference number: 5 (lower is better)
Translates to: AEVTNLSSCTPAVKLTLLNSTRC*VRMSLE
Trigger: CTCTAAGGACATTCTCACCAAACACCTCGTTGAATT...CAGCAGAGTGAGCTTTACTGCTGGTGTACATGAAGACAAGTTCGTAACTTCTGC
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000118282.9
ENSMUST00000232179.2
CDS TCA 90 bp AATTTTCTTCTAATGTCAGCTCCTCTAAACGACACAGTATGGCTCTaGGATGCAGTTACAGATCGGCCTAAGAACCTGAGCATGTCTAAG +
Preference number: 5 (lower is better)
Translates to: NFLLMSAPLNDTVWL*DAVTDRPKNLSMSK
Trigger: CTTAGACATGCTCAGGTTCTTAGGCCGATCTGTAACTGCATCTCAGAGCCATACTGTGTCGTTTAGAGGAGCTGACATTAGAAGAAAATT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000118282.9
ENSMUST00000232179.2
CDS TCA 90 bp ACTTCTTCTGCACTTCCATCATTTTCTTTTGGCACTGATTGGCACTaGAATCATTTGGCCTGTATCTTCTATGTGCACCGTCTTCGCTGT +
Preference number: 5 (lower is better)
Translates to: TSSALPSFSFGTDWH*NHLACIFYVHRLRC
Trigger: ACAGCGAAGACGGTGCACATAGAAGATACAGGCCAAATGATTTCAGTGCCAATCAGTGCCAAAAGAAAATGATGGAAGTGCAGAAGAAGT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000118282.9
ENSMUST00000132249.2
ENSMUST00000232179.2
CDS GCA 90 bp CTTCATGTAGTTTTCAATTCTCTGGTACTGAGTATCAGAGAACCTTaGCAACGAGAGAAAGGCCTTCATCTGTCCATTTCTGAGCTCTCT +
Preference number: 5 (lower is better)
Translates to: LHVVFNSLVLSIREP*QREKGLHLSISELS
Trigger: AGAGAGCTCAGAAATGGACAGATGAAGGCCTTTCTCTCGTTGGCAAGGTTCTCTGATACTCAGTACCAGAGAATTGAAAACTACATGAAG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000118282.9
ENSMUST00000232179.2
CDS GCA 90 bp TTGGCACTGATTGGCACTGAAATCATTTGGCCTGTATCTTCTATGTaGACCGTCTTCGCTGTTAACAAGATATTCACCAATAGGAACGGT +
Preference number: 5 (lower is better)
Translates to: LALIGTEIIWPVSSM*TVFAVNKIFTNRNG
Trigger: ACCGTTCCTATTGGTGAATATCTTGTTAACAGCGAAGACGGTGCACATAGAAGATACAGGCCAAATGATTTCAGTGCCAATCAGTGCCAA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000118282.9
ENSMUST00000132249.2
ENSMUST00000232179.2
CDS-3UTR CAA 90 bp GCAGAAGTTACGAACTTGTCTTCATGTACACCAGCAGTAAAGCTCACTCTGCTGAGAGCCACCTCATTATaGACTCCTTTACAGAAAAAC +
Preference number: 5 (lower is better)
Translates to: AEVTNLSSCTPAVKLTLLRATSL*TPLQKN
Trigger: GTTTTTCTGTAAAGGAGTCAATAATGAGGTGGCTCT...CAGCAGAGTGAGCTTTACTGCTGGTGTACATGAAGACAAGTTCGTAACTTCTGC
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000118282.9
ENSMUST00000232179.2
CDS-3UTR CAA 90 bp TTAAGTAATTCCTGTCCAAATATGGTGGGTGAGATGTCATTTCTGAAGTTCGAGTCCTCTACCAGGGTATaGTTGAGGGCAGTCAGCATT +
Preference number: 5 (lower is better)
Translates to: LSNSCPNMVGEMSFLKFESSTRV*LRAVSI
Trigger: AATGCTGACTGCCCTCAACAATACCCTGGTAGAGGA...CTCGAACTTCAGAAATGACATCTCACCCACCATATTTGGACAGGAATTACTTAA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000118282.9
ENSMUST00000232179.2
CDS-3UTR CAA 90 bp ATTCACTTAAGTAATTCCTGTCCAAATATGGTGGGTGAGATGTCATTTCTGAAGACTCTGAATCCGAATTaGCAGGAGTTGCTGAGCGGC +
Preference number: 5 (lower is better)
Translates to: IHLSNSCPNMVGEMSFLKTLNPN*QELLSG
Trigger: GCCGCTCAGCAACTCCTGCAAATTCGGATTCAGAGT...CTTCAGAAATGACATCTCACCCACCATATTTGGACAGGAATTACTTAAGTGAAT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000118282.9
ENSMUST00000232179.2
CDS TCA 90 bp TATACCCATGTAACAATAGCAGCCAAGAACACCCACCAAAAGACTTaGACACCGGACAAGGGTTTCAGAACTTGTAATCTCAGAAGAGTA +
Preference number: 5 (lower is better)
Translates to: YTHVTIAAKNTHQKT*TPDKGFRTCNLRRV
Trigger: TACTCTTCTGAGATTACAAGTTCTGAAACCCTTGTCCGGTGTTCAAGTCTTTTGGTGGGTGTTCTTGGCTGCTATTGTTACATGGGTATA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000118282.9
ENSMUST00000232179.2
CDS TCA 90 bp GAGTGGATGATTCTGGTTGCAGCCTCTGTTCGATCCTCATCAAGGTaGGAGTTTTCTTTAGATGTACTTTTGGTTATTCGACTCCTTCTT +
Preference number: 5 (lower is better)
Translates to: EWMILVAASVRSSSR*EFSLDVLLVIRLLL
Trigger: AAGAAGGAGTCGAATAACCAAAAGTACATCTAAAGAAAACTCTCACCTTGATGAGGATCGAACAGAGGCTGCAACCAGAATCATCCACTC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000118282.9
ENSMUST00000232179.2
CDS GCA 90 bp TTGTTTGCACATTTGATGAAGTATCTGACCAAACTGCTGATCTCTTaGATCTTCTTCTGTCTGGAGCTCTGTGTGGTGGCTGATACATTT +
Preference number: 5 (lower is better)
Translates to: LFAHLMKYLTKLLIS*IFFCLELCVVADTF
Trigger: AAATGTATCAGCCACCACACAGAGCTCCAGACAGAAGAAGATGCAAGAGATCAGCAGTTTGGTCAGATACTTCATCAAATGTGCAAACAA
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000118282.9
ENSMUST00000150244.2
ENSMUST00000232179.2
CDS CCA 90 bp TGGATTCCCTTTGTGTCACATAAGATTGAGAAATCTCCACGGATCTaGTATCTGCATCAAAAAGCTGGTAACAGATATCTGCCATCAGGT +
Preference number: 5 (lower is better)
Translates to: WIPFVSHKIEKSPRI*YLHQKAGNRYLPSG
Trigger: ACCTGATGGCAGATATCTGTTACCAGCTTTTTGATGCAGATACCAGATCCGTGGAGATTTCTCAATCTTATGTGACACAAAGGGAATCCA
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000118282.9
ENSMUST00000232179.2
CDS CCA 90 bp AGGAAGGTCTCTTTTGCCTTCTCAGATAGTCGACAACAGCAAGCATaGTTCTTTGTGACTTTTTATCCAAACAGCATCGGAGAAAGTTCT +
Preference number: 5 (lower is better)
Translates to: RKVSFAFSDSRQQQA*FFVTFYPNSIGESS
Trigger: AGAACTTTCTCCGATGCTGTTTGGATAAAAAGTCACAAAGAACCATGCTTGCTGTTGTCGACTATCTGAGAAGGCAAAAGAGACCTTCCT
42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000118282.9
ENSMUST00000232179.2
CDS-3UTR CAA 90 bp GCAGAAGTTACGAACTTGTCTTCATGTACACCAGCAGTAAAGCTCACTCTGCTGTGCTTCACACACACTTaGTTCTGTTCCCATTTTTAT +
Preference number: 5 (lower is better)
Translates to: AEVTNLSSCTPAVKLTLLCFTHT*FCSHFY
Trigger: ATAAAAATGGGAACAGAACAAAGTGTGTGTGAAGCA...CAGCAGAGTGAGCTTTACTGCTGGTGTACATGAAGACAAGTTCGTAACTTCTGC
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000118282.9
ENSMUST00000232179.2
CDS-3UTR CAA 90 bp CACACACACACACAGTCTGGAAAACATGCTTTAATTAAAGGTTGTTTTAGAGCACACCCACCAAAAGACTaGAACACCGGACAAGGGTTT +
Preference number: 5 (lower is better)
Translates to: HTHTQSGKHALIKGCFRAHPPKD*NTGQGF
Trigger: AAACCCTTGTCCGGTGTTCAAGTCTTTTGGTGGGTG...TGCTCTAAAACAACCTTTAATTAAAGCATGTTTTCCAGACTGTGTGTGTGTGTG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000118282.9
ENSMUST00000232179.2
CDS-3UTR CAA 90 bp TTAAGTAATTCCTGTCCAAATATGGTGGGTGAGATGTCATTTCTGAAGTTCGAGTGGTTCACTGCCATCTaGGATAACTGCAACAAGCTG +
Preference number: 5 (lower is better)
Translates to: LSNSCPNMVGEMSFLKFEWFTAI*DNCNKL
Trigger: CAGCTTGTTGCAGTTATCCAAGATGGCAGTGAACCA...CTCGAACTTCAGAAATGACATCTCACCCACCATATTTGGACAGGAATTACTTAA
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000118282.9
ENSMUST00000232179.2
CDS GCA 90 bp TTGCATAAAGCAAACAAAGCCTGCTTTTCACAGACTGGGCTACAGTaGAAGACCACAGCTATCATCATCAGTAGTACAGATTTTCTGTTA +
Preference number: 5 (lower is better)
Translates to: LHKANKACFSQTGLQ*KTTAIIISSTDFLL
Trigger: TAACAGAAAATCTGTACTACTGATGATGATAGCTGTGGTCTTGCACTGTAGCCCAGTCTGTGAAAAGCAGGCTTTGTTTGCTTTATGCAA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000118282.9
ENSMUST00000232179.2
CDS GCA 90 bp TCACTTCACACATTGGCTTTAATAACTGGAGAATTTCACTGTTTATaGCTCCACTGTCCAGAAAGGCACACGTCAGTGTCTTTATCCAAA +
Preference number: 5 (lower is better)
Translates to: SLHTLALITGEFHCL*LHCPERHTSVSLSK
Trigger: TTTGGATAAAGACACTGACGTGTGCCTTTCTGGACAGTGGAGGCATAAACAGTGAAATTCTCCAGTTATTAAAGCCAATGTGTGAAGTGA
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000118282.9
ENSMUST00000232179.2
CDS CCA 90 bp CACTTCCATCATTTTCTTTTGGCACTGATTGGCACTGAAATCATTTaGCCTGTATCTTCTATGTGCACCGTCTTCGCTGTTAACAAGATA +
Preference number: 5 (lower is better)
Translates to: HFHHFLLALIGTEII*PVSSMCTVFAVNKI
Trigger: TATCTTGTTAACAGCGAAGACGGTGCACATAGAAGATACAGGCCAAATGATTTCAGTGCCAATCAGTGCCAAAAGAAAATGATGGAAGTG
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000118282.9
ENSMUST00000132249.2
ENSMUST00000232179.2
CDS-3UTR CAA 90 bp TTAAGTAATTCCTGTCCAAATATGGTGGGTGAGATGTCATTTCTGAAGTTCGAGCGCTCAGCTACTTTGTaGAAACTCTGGTCAGTATCA +
Preference number: 5 (lower is better)
Translates to: LSNSCPNMVGEMSFLKFERSATL*KLWSVS
Trigger: TGATACTGACCAGAGTTTCAACAAAGTAGCTGAGCG...CTCGAACTTCAGAAATGACATCTCACCCACCATATTTGGACAGGAATTACTTAA
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000118282.9
ENSMUST00000232179.2
CDS TCA 90 bp CATCAGGTCAATCAGATTTTCCTTGACAGCAATATTACGAGATCCTaGGGAATATTTCCCTCGGCTTCCTATATGACTTATCTCATTCAC +
Preference number: 5 (lower is better)
Translates to: HQVNQIFLDSNITRS*GIFPSASYMTYLIH
Trigger: GTGAATGAGATAAGTCATATAGGAAGCCGAGGGAAATATTCCTCAGGATCTCGTAATATTGCTGTCAAGGAAAATCTGATTGACCTGATG
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000118282.9
ENSMUST00000232179.2
CDS-3UTR CAA 90 bp ATTCACTTAAGTAATTCCTGTCCAAATATGGTGGGTGAGATGTCATTTCTGAAGAGCCTGGGTGCTCTTTaGTTTGCACATTTGATGAAG +
Preference number: 5 (lower is better)
Translates to: IHLSNSCPNMVGEMSFLKSLGAL*FAHLMK
Trigger: CTTCATCAAATGTGCAAACAAAAGAGCACCCAGGCT...CTTCAGAAATGACATCTCACCCACCATATTTGGACAGGAATTACTTAAGTGAAT
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000118282.9
ENSMUST00000232179.2
CDS-3UTR CAA 90 bp CACACACACACACAGTCTGGAAAACATGCTTTAATTAAAGGTTGTTTTAGAGCATTGACAGCCAGAGACTaGAGGAAAATGTTAAGGGCT +
Preference number: 5 (lower is better)
Translates to: HTHTQSGKHALIKGCFRALTARD*RKMLRA
Trigger: AGCCCTTAACATTTTCCTCAAGTCTCTGGCTGTCAA...TGCTCTAAAACAACCTTTAATTAAAGCATGTTTTCCAGACTGTGTGTGTGTGTG
40% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000118282.9
ENSMUST00000232179.2
CDS-3UTR CAA 90 bp TTAAGTAATTCCTGTCCAAATATGGTGGGTGAGATGTCATTTCTGAAGTTCGAGGTCCAATACCTGTTCTaGAACTTCCTGATAATCCAC +
Preference number: 5 (lower is better)
Translates to: LSNSCPNMVGEMSFLKFEVQYLF*NFLIIH
Trigger: GTGGATTATCAGGAAGTTCAAGAACAGGTATTGGAC...CTCGAACTTCAGAAATGACATCTCACCCACCATATTTGGACAGGAATTACTTAA
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000118282.9
ENSMUST00000232179.2
CDS-3UTR CAA 90 bp ATTCACTTAAGTAATTCCTGTCCAAATATGGTGGGTGAGATGTCATTTCTGAAGGACTCTGCTCCTTTTTaGCCCAGAATACTTGTGCTT +
Preference number: 5 (lower is better)
Translates to: IHLSNSCPNMVGEMSFLKDSAPF*PRILVL
Trigger: AAGCACAAGTATTCTGGGCAAAAAAGGAGCAGAGTC...CTTCAGAAATGACATCTCACCCACCATATTTGGACAGGAATTACTTAAGTGAAT
40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000118282.9
ENSMUST00000232179.2
CDS-3UTR CAA 90 bp CACACACACACACAGTCTGGAAAACATGCTTTAATTAAAGGTTGTTTTAGAGCAAGGCCCACTTCCTCTTaGGCTCTTTTTAAGAGAGTT +
Preference number: 5 (lower is better)
Translates to: HTHTQSGKHALIKGCFRARPTSS*ALFKRV
Trigger: AACTCTCTTAAAAAGAGCCAAAGAGGAAGTGGGCCT...TGCTCTAAAACAACCTTTAATTAAAGCATGTTTTCCAGACTGTGTGTGTGTGTG
40% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000118282.9
ENSMUST00000232179.2
CDS-3UTR CAA 90 bp ATTCACTTAAGTAATTCCTGTCCAAATATGGTGGGTGAGATGTCATTTCTGAAGCGCTCAGCTACTTTGTaGAAACTCTGGTCAGTATCA +
Preference number: 5 (lower is better)
Translates to: IHLSNSCPNMVGEMSFLKRSATL*KLWSVS
Trigger: TGATACTGACCAGAGTTTCAACAAAGTAGCTGAGCG...CTTCAGAAATGACATCTCACCCACCATATTTGGACAGGAATTACTTAAGTGAAT
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000118282.9
ENSMUST00000232179.2
CDS CCA 90 bp AGCAATGGACTTCACCTCATCAAAATGGCTTCTGATTACCAAATGTaGGATCAAAATCTTGTAACAAGACCGATAGAAATCCTCAATGCT +
Preference number: 5 (lower is better)
Translates to: SNGLHLIKMASDYQM*DQNLVTRPIEILNA
Trigger: AGCATTGAGGATTTCTATCGGTCTTGTTACAAGATTTTGATCCCACATTTGGTAATCAGAAGCCATTTTGATGAGGTGAAGTCCATTGCT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000118282.9
ENSMUST00000232179.2
CDS-3UTR CAA 90 bp TTAAGTAATTCCTGTCCAAATATGGTGGGTGAGATGTCATTTCTGAAGTTCGAGCATTGCATCAGAGACTaGGCTTTCTGGAATAATTCT +
Preference number: 5 (lower is better)
Translates to: LSNSCPNMVGEMSFLKFEHCIRD*AFWNNS
Trigger: AGAATTATTCCAGAAAGCCAAGTCTCTGATGCAATG...CTCGAACTTCAGAAATGACATCTCACCCACCATATTTGGACAGGAATTACTTAA
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000118282.9
ENSMUST00000232179.2
CDS-3UTR CAA 90 bp TTAAGTAATTCCTGTCCAAATATGGTGGGTGAGATGTCATTTCTGAAGTTCGAGTTTTCCTTCACAGACTaGCATAAAGCAAACAAAGCC +
Preference number: 5 (lower is better)
Translates to: LSNSCPNMVGEMSFLKFEFSFTD*HKANKA
Trigger: GGCTTTGTTTGCTTTATGCAAGTCTGTGAAGGAAAA...CTCGAACTTCAGAAATGACATCTCACCCACCATATTTGGACAGGAATTACTTAA
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000118282.9
ENSMUST00000232179.2
CDS-3UTR CAA 90 bp ATTCACTTAAGTAATTCCTGTCCAAATATGGTGGGTGAGATGTCATTTCTGAAGTTCGACTCCTTCTTGTaGTCTCTGGTTTGCTCAAAA +
Preference number: 5 (lower is better)
Translates to: IHLSNSCPNMVGEMSFLKFDSFL*SLVCSK
Trigger: TTTTGAGCAAACCAGAGACAACAAGAAGGAGTCGAA...CTTCAGAAATGACATCTCACCCACCATATTTGGACAGGAATTACTTAAGTGAAT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000118282.9
ENSMUST00000232179.2
CDS-3UTR CAA 90 bp TTAAGTAATTCCTGTCCAAATATGGTGGGTGAGATGTCATTTCTGAAGTTCGAGAACTGGTTCAAAGTTTaGGCAAATCGTCATGAAGGT +
Preference number: 5 (lower is better)
Translates to: LSNSCPNMVGEMSFLKFENWFKV*ANRHEG
Trigger: ACCTTCATGACGATTTGCCAAAACTTTGAACCAGTT...CTCGAACTTCAGAAATGACATCTCACCCACCATATTTGGACAGGAATTACTTAA
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000118282.9
ENSMUST00000232179.2
CDS-3UTR CAA 90 bp ATTCACTTAAGTAATTCCTGTCCAAATATGGTGGGTGAGATGTCATTTCTGAAGACTTTGTTTGCATTCTaGATCATCTGCATTGGGGGT +
Preference number: 5 (lower is better)
Translates to: IHLSNSCPNMVGEMSFLKTLFAF*IICIGG
Trigger: ACCCCCAATGCAGATGATCAAGAATGCAAACAAAGT...CTTCAGAAATGACATCTCACCCACCATATTTGGACAGGAATTACTTAAGTGAAT
39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000118282.9
ENSMUST00000232179.2
CDS-3UTR CAA 90 bp CACACACACACACAGTCTGGAAAACATGCTTTAATTAAAGGTTGTTTTAGAGCATTCTTCATCATGCCATaGACTTCAGAAACTCCAGAA +
Preference number: 5 (lower is better)
Translates to: HTHTQSGKHALIKGCFRAFFIMP*TSETPE
Trigger: TTCTGGAGTTTCTGAAGTCAATGGCATGATGAAGAA...TGCTCTAAAACAACCTTTAATTAAAGCATGTTTTCCAGACTGTGTGTGTGTGTG
38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000118282.9
ENSMUST00000232179.2
CDS TCA 90 bp GCAATATTACGAGATCCTGAGGAATATTTCCCTCGGCTTCCTATATaGCTTATCTCATTCACTAGCAAGTCATATAAGTTGTACAAGATA +
Preference number: 5 (lower is better)
Translates to: AILRDPEEYFPRLPI*LISFTSKSYKLYKI
Trigger: TATCTTGTACAACTTATATGACTTGCTAGTGAATGAGATAAGTCATATAGGAAGCCGAGGGAAATATTCCTCAGGATCTCGTAATATTGC
37% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000118282.9
ENSMUST00000232179.2
CDS TCA 90 bp TTAAGAATTGCCCATTCGGAATATGGATCAGCCTCAAGCAATGTTTaGAGACACTTTACTAATGCCATTCTTACAGAGAATACACATTTC +
Preference number: 5 (lower is better)
Translates to: LRIAHSEYGSASSNV*RHFTNAILTENTHF
Trigger: GAAATGTGTATTCTCTGTAAGAATGGCATTAGTAAAGTGTCTTCAAACATTGCTTGAGGCTGATCCATATTCCGAATGGGCAATTCTTAA
37% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000118282.9
ENSMUST00000232179.2
CDS GCA 90 bp TTTGGCGTATGCTTGGTATGTATACACAAGCAACTTGTACACAGATaGATCACATTTCTCAATGAACCAATTCTTGATTCCTCATTTGTT +
Preference number: 5 (lower is better)
Translates to: FGVCLVCIHKQLVHR*ITFLNEPILDSSFV
Trigger: AACAAATGAGGAATCAAGAATTGGTTCATTGAGAAATGTGATGCATCTGTGTACAAGTTGCTTGTGTATACATACCAAGCATACGCCAAA
37% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000118282.9
ENSMUST00000232179.2
CDS-3UTR CAA 90 bp ATTCACTTAAGTAATTCCTGTCCAAATATGGTGGGTGAGATGTCATTTCTGAAGCTGATACATTTGATTTaGCTGTTCTCAGACTTTCCA +
Preference number: 5 (lower is better)
Translates to: IHLSNSCPNMVGEMSFLKLIHLI*LFSDFP
Trigger: TGGAAAGTCTGAGAACAGCAAAATCAAATGTATCAG...CTTCAGAAATGACATCTCACCCACCATATTTGGACAGGAATTACTTAAGTGAAT
37% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000118282.9
ENSMUST00000232179.2
CDS-3UTR CAA 90 bp ATTCACTTAAGTAATTCCTGTCCAAATATGGTGGGTGAGATGTCATTTCTGAAGTGCTTCACACACACTTaGTTCTGTTCCCATTTTTAT +
Preference number: 5 (lower is better)
Translates to: IHLSNSCPNMVGEMSFLKCFTHT*FCSHFY
Trigger: ATAAAAATGGGAACAGAACAAAGTGTGTGTGAAGCA...CTTCAGAAATGACATCTCACCCACCATATTTGGACAGGAATTACTTAAGTGAAT
37% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000118282.9
ENSMUST00000232179.2
CDS-3UTR CAA 90 bp CACACACACACACAGTCTGGAAAACATGCTTTAATTAAAGGTTGTTTTAGAGCACACATTTCTTTTCCTTaGTCAAATGCCAAAATGCTC +
Preference number: 5 (lower is better)
Translates to: HTHTQSGKHALIKGCFRAHISFP*SNAKML
Trigger: GAGCATTTTGGCATTTGACAAAGGAAAAGAAATGTG...TGCTCTAAAACAACCTTTAATTAAAGCATGTTTTCCAGACTGTGTGTGTGTGTG
37% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 2 transcripts:
ENSMUST00000118282.9
ENSMUST00000232179.2
CDS TCA 72 bp GGAGAGCCCCAAATTCTGCAGGGCCTGGATGATTCCTaGCTGGCGGGTGGAGGAGGAGATGCTGGTCTCCAG +
Preference number: 6 (lower is better)
Translates to: GEPQILQGLDDS*LAGGGGDAGLQ
Trigger: CTGGAGACCAGCATCTCCTCCTCCACCCGCCAGTCAGGAATCATCCAGGCCCTGCAGAATTTGGGGCTCTCC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000118282.9
ENSMUST00000232179.2
CDS CCA 72 bp CCCCTGAAAAATCACACAAGGCGGTGGCGCTTTGACTaGCGTCCGAGTCAGCCGAGTCAGCTGTCTCATGCA +
Preference number: 6 (lower is better)
Translates to: PLKNHTRRWRFD*RPSQPSQLSHA
Trigger: TGCATGAGACAGCTGACTCGGCTGACTCGGACGCCAGTCAAAGCGCCACCGCCTTGTGTGATTTTTCAGGGG
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000118282.9
ENSMUST00000232179.2
CDS CCA 72 bp GACAGGATATGGGAGAGCCCCAAATTCTGCAGGGCCTaGATGATTCCTGACTGGCGGGTGGAGGAGGAGATG +
Preference number: 6 (lower is better)
Translates to: DRIWESPKFCRA*MIPDWRVEEEM
Trigger: CATCTCCTCCTCCACCCGCCAGTCAGGAATCATCCAGGCCCTGCAGAATTTGGGGCTCTCCCATATCCTGTC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000118282.9
ENSMUST00000232179.2
CDS CCA 72 bp ACTAGCGGGGTAAGCAGTAGAAAGACCAGTGGACGATaGACCCTCTGCCTCCATCAGACTGTCACAACCACC +
Preference number: 6 (lower is better)
Translates to: TSGVSSRKTSGR*TLCLHQTVTTT
Trigger: GGTGGTTGTGACAGTCTGATGGAGGCAGAGGGTCCATCGTCCACTGGTCTTTCTACTGCTTACCCCGCTAGT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000118282.9
ENSMUST00000232179.2
CDS TCA 72 bp TCCAGAATGACTGTGCGCAGAGCCATGAGAGGCTCCTaGAAGCTGAAGTCGCTGTCTTTCAGAAGCTGGGAG +
Preference number: 6 (lower is better)
Translates to: SRMTVRRAMRGS*KLKSLSFRSWE
Trigger: CTCCCAGCTTCTGAAAGACAGCGACTTCAGCTTTCAGGAGCCTCTCATGGCTCTGCGCACAGTCATTCTGGA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000118282.9
ENSMUST00000232179.2
CDS TCA 72 bp ACGGTTCCTGTGCACCACTCGAGAACACCGCTTCGCTaGGAAAGGGGAACCACCTTGTATGTGCAGATAGTC +
Preference number: 6 (lower is better)
Translates to: TVPVHHSRTPLR*ERGTTLYVQIV
Trigger: GACTATCTGCACATACAAGGTGGTTCCCCTTTCTCAGCGAAGCGGTGTTCTCGAGTGGTGCACAGGAACCGT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000118282.9
ENSMUST00000132249.2
ENSMUST00000232179.2
CDS GCA 72 bp TTGCACATCTGGAAGACCTGCTGCATGACAGCATCTTaGCTCAGGTCATCACGGCCCTTCACAAGCTGTCTC +
Preference number: 6 (lower is better)
Translates to: LHIWKTCCMTAS*LRSSRPFTSCL
Trigger: GAGACAGCTTGTGAAGGGCCGTGATGACCTGAGGCAAGATGCTGTCATGCAGCAGGTCTTCCAGATGTGCAA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000118282.9
ENSMUST00000232179.2
CDS GCA 72 bp CTCTGCAGTAGTGTATTGCACATCTGGAAGACCTGCTaGATGACAGCATCTTGCCTCAGGTCATCACGGCCC +
Preference number: 6 (lower is better)
Translates to: LCSSVLHIWKTC*MTASCLRSSRP
Trigger: GGGCCGTGATGACCTGAGGCAAGATGCTGTCATGCAGCAGGTCTTCCAGATGTGCAATACACTACTGCAGAG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000118282.9
ENSMUST00000132249.2
ENSMUST00000232179.2
CDS GCA 72 bp GGGAAGAGTCGGCTGAGATTTTTGGGATCCATGGCCTaGTGGATAAGCAAGTTCACCTGTCCACCCACACTG +
Preference number: 6 (lower is better)
Translates to: GKSRLRFLGSMA*WISKFTCPPTL
Trigger: CAGTGTGGGTGGACAGGTGAACTTGCTTATCCAGCAGGCCATGGATCCCAAAAATCTCAGCCGACTCTTCCC
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000118282.9
ENSMUST00000232179.2
CDS CAA 90 bp CAGAGCATTATACAACGATTCATGGTAACTGGTTCCTTCTACTTCTaGGCCGGCAGAAGCGCAGAGGCCCCACTGCATGTTCCTCCACGC +
Preference number: 6 (lower is better)
Translates to: QSIIQRFMVTGSFYF*AGRSAEAPLHVPPR
Trigger: GCGTGGAGGAACATGCAGTGGGGCCTCTGCGCTTCTGCCGGCCAAGAAGTAGAAGGAACCAGTTACCATGAATCGTTGTATAATGCTCTG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000118282.9
ENSMUST00000232179.2
CDS TCA 72 bp GCAGTAGTGTATTGCACATCTGGAAGACCTGCTGCATaGCAGCATCTTGCCTCAGGTCATCACGGCCCTTCA +
Preference number: 6 (lower is better)
Translates to: AVVYCTSGRPAA*QHLASGHHGPS
Trigger: TGAAGGGCCGTGATGACCTGAGGCAAGATGCTGTCATGCAGCAGGTCTTCCAGATGTGCAATACACTACTGC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000118282.9
ENSMUST00000232179.2
CDS TCA 72 bp GCAGTAGTGTATTGCACATCTGGAAGACCTGCTGCATaGCAGCATCTTGCCTCAGGTCATCACGGCCCAGAT +
Preference number: 6 (lower is better)
Translates to: AVVYCTSGRPAA*QHLASGHHGPD
Trigger: ATCTGGGCCGTGATGACCTGAGGCAAGATGCTGTCATGCAGCAGGTCTTCCAGATGTGCAATACACTACTGC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000132249.2
CDS GCA 72 bp GTAAGCAGTAGAAAGACCAGTGGACGATGGACCCTCTaGCTCCATCAGACTGTCACAACCACCACCATCTTC +
Preference number: 6 (lower is better)
Translates to: VSSRKTSGRWTL*LHQTVTTTTIF
Trigger: GAAGATGGTGGTGGTTGTGACAGTCTGATGGAGGCAGAGGGTCCATCGTCCACTGGTCTTTCTACTGCTTAC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000118282.9
ENSMUST00000232179.2
CDS GCA 72 bp GCCACTCCCAGGTCTATGTGCACAAGCTCTGCCGACTaGTCGTTTATCAAGATATTCTGTACGTGCCTGTCG +
Preference number: 6 (lower is better)
Translates to: ATPRSMCTSSAD*SFIKIFCTCLS
Trigger: CGACAGGCACGTACAGAATATCTTGATAAACGAGCAGTCGGCAGAGCTTGTGCACATAGACCTGGGAGTGGC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000118282.9
ENSMUST00000232179.2
CDS CCA 72 bp AAGAGTCGGCTGAGATTTTTGGGATCCATGGCCTGCTaGATAAGCAAGTTCACCTGTCCACCCACACTGAGC +
Preference number: 6 (lower is better)
Translates to: KSRLRFLGSMAC*ISKFTCPPTLS
Trigger: GCTCAGTGTGGGTGGACAGGTGAACTTGCTTATCCAGCAGGCCATGGATCCCAAAAATCTCAGCCGACTCTT
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000118282.9
ENSMUST00000232179.2
CDS CAA 72 bp ATTGCACATCTGGAAGACCTGCTGCATGACAGCATCTaGCCTCAGGTCATCACGGCCCTTCACAAGCTGTCT +
Preference number: 6 (lower is better)
Translates to: IAHLEDLLHDSI*PQVITALHKLS
Trigger: AGACAGCTTGTGAAGGGCCGTGATGACCTGAGGCAAGATGCTGTCATGCAGCAGGTCTTCCAGATGTGCAAT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000118282.9
ENSMUST00000232179.2
CDS TCA 72 bp AGGTGTTTGGTGAGAATGTCCTTAGAGCATGCTCCTTaGGAGCGCTCCATTTCCTTCTGTACCAGGGTCTCC +
Preference number: 6 (lower is better)
Translates to: RCLVRMSLEHAP*ERSISFCTRVS
Trigger: GGAGACCCTGGTACAGAAGGAAATGGAGCGCTCTCAAGGAGCATGCTCTAAGGACATTCTCACCAAACACCT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000118282.9
ENSMUST00000232179.2
CDS GCA 72 bp GTCCTTGAGCAATCCGTGTGCTCTCCATGTCCACACTaGCCTGGCCTAGGTTTGTCACTATATGAAGGACAT +
Preference number: 6 (lower is better)
Translates to: VLEQSVCSPCPH*PGLGLSLYEGH
Trigger: ATGTCCTTCATATAGTGACAAACCTAGGCCAGGGCAGTGTGGACATGGAGAGCACACGGATTGCTCAAGGAC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000118282.9
ENSMUST00000232179.2
CDS CAA 72 bp ATACAACGATTCATGGTAACTGGTTCCTTCTACTTCTaGGCCGGCAGAAGCGCAGAGGCCCCACTGCATGTT +
Preference number: 6 (lower is better)
Translates to: IQRFMVTGSFYF*AGRSAEAPLHV
Trigger: AACATGCAGTGGGGCCTCTGCGCTTCTGCCGGCCAAGAAGTAGAAGGAACCAGTTACCATGAATCGTTGTAT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000118282.9
ENSMUST00000232179.2
CDS TCA 72 bp AGTATCGTAGACCTTGGTAGCAGTCTCTCTTTTCTGTaGCACGTAGCTGTCTCTCGTGCCCTCGTAGGCAAA +
Preference number: 6 (lower is better)
Translates to: SIVDLGSSLSFL*HVAVSRALVGK
Trigger: TTTGCCTACGAGGGCACGAGAGACAGCTACGTGTCACAGAAAAGAGAGACTGCTACCAAGGTCTACGATACT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000118282.9
ENSMUST00000232179.2
CDS GCA 72 bp CAGTCTCTCTTTTCTGTGACACGTAGCTGTCTCTCGTaGCCTCGTAGGCAAAGTAAGGAAGGATGTGCACAA +
Preference number: 6 (lower is better)
Translates to: QSLFSVTRSCLS*PRRQSKEGCAQ
Trigger: TTGTGCACATCCTTCCTTACTTTGCCTACGAGGGCACGAGAGACAGCTACGTGTCACAGAAAAGAGAGACTG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000118282.9
ENSMUST00000232179.2
CDS GCA 72 bp TTTCTCTGCAGTAGTGTATTGCACATCTGGAAGACCTaGTGCATGACAGCATCTTGCCTCAGGTCATCACGG +
Preference number: 6 (lower is better)
Translates to: FLCSSVLHIWKT*CMTASCLRSSR
Trigger: CCGTGATGACCTGAGGCAAGATGCTGTCATGCAGCAGGTCTTCCAGATGTGCAATACACTACTGCAGAGAAA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000118282.9
ENSMUST00000132249.2
ENSMUST00000232179.2
CDS GCA 72 bp TTGCACATCTGGAAGACCTGCTGCATGACAGCATCTTaGCTCAGGTCATCACGGCCCAGATTTTCATACTCT +
Preference number: 6 (lower is better)
Translates to: LHIWKTCCMTAS*LRSSRPRFSYS
Trigger: AGAGTATGAAAATCTGGGCCGTGATGACCTGAGGCAAGATGCTGTCATGCAGCAGGTCTTCCAGATGTGCAA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000132249.2
CDS CAA 72 bp AGCATCGGAGAAAGTTCTCTGACTCTGAATCCGAATTaGCAGGAGTTGCTGAGCGGCTTGCTTGGGAGGAAT +
Preference number: 6 (lower is better)
Translates to: SIGESSLTLNPN*QELLSGLLGRN
Trigger: ATTCCTCCCAAGCAAGCCGCTCAGCAACTCCTGCAAATTCGGATTCAGAGTCAGAGAACTTTCTCCGATGCT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000118282.9
ENSMUST00000232179.2
CDS CAA 72 bp ATTGCACATCTGGAAGACCTGCTGCATGACAGCATCTaGCCTCAGGTCATCACGGCCCAGATTTTCATACTC +
Preference number: 6 (lower is better)
Translates to: IAHLEDLLHDSI*PQVITAQIFIL
Trigger: GAGTATGAAAATCTGGGCCGTGATGACCTGAGGCAAGATGCTGTCATGCAGCAGGTCTTCCAGATGTGCAAT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000132249.2
CDS CAA 90 bp GAATTCAACGAGGTGTTTGGTGAGAATGTCCTTAGAGCATGCTCCTaGAGAGCGCTCCATTTCCTTCTGTACCAGGGTCTCCAGAATGAC +
Preference number: 6 (lower is better)
Translates to: EFNEVFGENVLRACS*RALHFLLYQGLQND
Trigger: GTCATTCTGGAGACCCTGGTACAGAAGGAAATGGAGCGCTCTCAAGGAGCATGCTCTAAGGACATTCTCACCAAACACCTCGTTGAATTC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000118282.9
ENSMUST00000232179.2
CDS TCA 72 bp TGGTTGCAGAAGTTCAACAACATCTTCCATTGGCAATaGGTGCTCGTTTCCAGGGAGATCCTTCAGGAGCAC +
Preference number: 6 (lower is better)
Translates to: WLQKFNNIFHWQ*VLVSREILQEH
Trigger: GTGCTCCTGAAGGATCTCCCTGGAAACGAGCACTCATTGCCAATGGAAGATGTTGTTGAACTTCTGCAACCA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000118282.9
ENSMUST00000232179.2
CDS TCA 72 bp TTGCCAACGAGAGAAAGGCCTTCATCTGTCCATTTCTaGGCTCTCTGCTGTTGCCATCGTAACTTCCAGCAA +
Preference number: 6 (lower is better)
Translates to: LPTRERPSSVHF*ALCCCHRNFQQ
Trigger: TTGCTGGAAGTTACGATGGCAACAGCAGAGAGCTCAGAAATGGACAGATGAAGGCCTTTCTCTCGTTGGCAA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000118282.9
ENSMUST00000232179.2
CDS TCA 72 bp CCCACAGATCATGTTCTTCCCCGCTTAGTAAGCAGTTaGTGTAGTTCTCCACTGCTTTACACAGGAAGCGCT +
Preference number: 6 (lower is better)
Translates to: PTDHVLPRLVSS*CSSPLLYTGSA
Trigger: AGCGCTTCCTGTGTAAAGCAGTGGAGAACTACATCAACTGCTTACTAAGCGGGGAAGAACATGATCTGTGGG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000118282.9
ENSMUST00000232179.2
CDS GCA 72 bp TTTCCAGGGAGATCCTTCAGGAGCACTAAGTACATATaGAGGTGGAGGGGCTTCATGAGATCGAGTATGCTA +
Preference number: 6 (lower is better)
Translates to: FPGRSFRSTKYI*RWRGFMRSSML
Trigger: TAGCATACTCGATCTCATGAAGCCCCTCCACCTGCATATGTACTTAGTGCTCCTGAAGGATCTCCCTGGAAA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000118282.9
ENSMUST00000232179.2
CDS GCA 72 bp TTTGCAGGAGTTGCTGAGCGGCTTGCTTGGGAGGAATaGTTAAAACAACTAGTGAAAAATCCTCGGACGTGC +
Preference number: 6 (lower is better)
Translates to: FAGVAERLAWEE*LKQLVKNPRTC
Trigger: GCACGTCCGAGGATTTTTCACTAGTTGTTTTAAGCATTCCTCCCAAGCAAGCCGCTCAGCAACTCCTGCAAA
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000118282.9
ENSMUST00000232179.2
CDS GCA 72 bp TTCAACGAGGTGTTTGGTGAGAATGTCCTTAGAGCATaGTCCTTGAGAGCGCTCCATTTCCTTCTGTACCAG +
Preference number: 6 (lower is better)
Translates to: FNEVFGENVLRA*SLRALHFLLYQ
Trigger: CTGGTACAGAAGGAAATGGAGCGCTCTCAAGGAGCATGCTCTAAGGACATTCTCACCAAACACCTCGTTGAA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000118282.9
ENSMUST00000232179.2
CDS GCA 72 bp ACCGACGATAGAAGATGTGGCCACACTGCGTGTATATaGCAATCGTTTCTCAAACCAAACAGCTGGGTCCAA +
Preference number: 6 (lower is better)
Translates to: TDDRRCGHTACI*QSFLKPNSWVQ
Trigger: TTGGACCCAGCTGTTTGGTTTGAGAAACGATTGGCATATACACGCAGTGTGGCCACATCTTCTATCGTCGGT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000118282.9
ENSMUST00000232179.2
CDS GCA 72 bp ATCTTCCCCTGTTCAAAAGCCACTCCCAGGTCTATGTaGACAAGCTCTGCCGACTGCTCGTTTATCAAGATA +
Preference number: 6 (lower is better)
Translates to: IFPCSKATPRSM*TSSADCSFIKI
Trigger: TATCTTGATAAACGAGCAGTCGGCAGAGCTTGTGCACATAGACCTGGGAGTGGCTTTTGAACAGGGGAAGAT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000118282.9
ENSMUST00000232179.2
CDS CCA 72 bp GGGAGATCCTTCAGGAGCACTAAGTACATATGCAGGTaGAGGGGCTTCATGAGATCGAGTATGCTAGAATCA +
Preference number: 6 (lower is better)
Translates to: GRSFRSTKYICR*RGFMRSSMLES
Trigger: TGATTCTAGCATACTCGATCTCATGAAGCCCCTCCACCTGCATATGTACTTAGTGCTCCTGAAGGATCTCCC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000118282.9
ENSMUST00000232179.2
CDS CCA 72 bp CCAGTTGTCTTCGAAGATCCTTCAGTCCTTCAAGCCTaGTCAGCGGAAGTGGATTGTAAGCACTTACTGAGA +
Preference number: 6 (lower is better)
Translates to: PVVFEDPSVLQA*SAEVDCKHLLR
Trigger: TCTCAGTAAGTGCTTACAATCCACTTCCGCTGACCAGGCTTGAAGGACTGAAGGATCTTCGAAGACAACTGG
49% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000118282.9
ENSMUST00000232179.2
CDS CCA 72 bp GACACTGCAGAGCATTATACAACGATTCATGGTAACTaGTTCCTTCTACTTCTTGGCCGGCAGAAGCGCAGA +
Preference number: 6 (lower is better)
Translates to: DTAEHYTTIHGN*FLLLLGRQKRR
Trigger: TCTGCGCTTCTGCCGGCCAAGAAGTAGAAGGAACCAGTTACCATGAATCGTTGTATAATGCTCTGCAGTGTC
49% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000118282.9
ENSMUST00000232179.2
CDS CCA 72 bp GACTTTGTTTGCATTCTTGATCATCTGCATTGGGGGTaGAATGGAGGTCGGACTCATCTTCTGGTCTCTGCT +
Preference number: 6 (lower is better)
Translates to: DFVCILDHLHWG*NGGRTHLLVSA
Trigger: AGCAGAGACCAGAAGATGAGTCCGACCTCCATTCCACCCCCAATGCAGATGATCAAGAATGCAAACAAAGTC
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000118282.9
ENSMUST00000232179.2
CDS CAA 72 bp AGCGTCATCAAAAGCTGTTCCCGAGGAAGGTCTCTTTaGCCTTCTCAGATAGTCGACAACAGCAAGCATGGT +
Preference number: 6 (lower is better)
Translates to: SVIKSCSRGRSL*PSQIVDNSKHG
Trigger: ACCATGCTTGCTGTTGTCGACTATCTGAGAAGGCAAAAGAGACCTTCCTCGGGAACAGCTTTTGATGACGCT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000118282.9
ENSMUST00000232179.2
CDS CAA 90 bp GAGCAATCCGTGTGCTCTCCATGTCCACACTGCCCTGGCCTAGGTTaGTCACTATATGAAGGACATTGCTTAGAATCGTTTTACAGACAT +
Preference number: 6 (lower is better)
Translates to: EQSVCSPCPHCPGLG*SLYEGHCLESFYRH
Trigger: ATGTCTGTAAAACGATTCTAAGCAATGTCCTTCATATAGTGACAAACCTAGGCCAGGGCAGTGTGGACATGGAGAGCACACGGATTGCTC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000118282.9
ENSMUST00000232179.2
CDS TCA 72 bp CGTAACACATATGGGATGCGTTCTCCACGTCGCTGTTaGGGCAGAAGCTGGTACAGTATCAGTATTAATGGA +
Preference number: 6 (lower is better)
Translates to: RNTYGMRSPRRC*GRSWYSISING
Trigger: TCCATTAATACTGATACTGTACCAGCTTCTGCCTCAACAGCGACGTGGAGAACGCATCCCATATGTGTTACG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000118282.9
ENSMUST00000232179.2
CDS TCA 72 bp TCTGGTTCACTGCCATCTTGGATAACTGCAACAAGCTaGCAACTAGCTTCACCACAATGCCATCTTGTGGGT +
Preference number: 6 (lower is better)
Translates to: SGSLPSWITATS*QLASPQCHLVG
Trigger: ACCCACAAGATGGCATTGTGGTGAAGCTAGTTGTCAGCTTGTTGCAGTTATCCAAGATGGCAGTGAACCAGA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000118282.9
ENSMUST00000232179.2
CDS GCA 72 bp TGCAGAAGTTCAACAACATCTTCCATTGGCAATGAGTaGTCGTTTCCAGGGAGATCCTTCAGGAGCACTAAG +
Preference number: 6 (lower is better)
Translates to: CRSSTTSSIGNE*SFPGRSFRSTK
Trigger: CTTAGTGCTCCTGAAGGATCTCCCTGGAAACGAGCACTCATTGCCAATGGAAGATGTTGTTGAACTTCTGCA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000118282.9
ENSMUST00000232179.2
CDS GCA 72 bp ACATCGCTTACTTCTGATGGAGTGGATGATTCTGGTTaGAGCCTCTGTTCGATCCTCATCAAGGTGAGAGTT +
Preference number: 6 (lower is better)
Translates to: TSLTSDGVDDSG*SLCSILIKVRV
Trigger: AACTCTCACCTTGATGAGGATCGAACAGAGGCTGCAACCAGAATCATCCACTCCATCAGAAGTAAGCGATGT
47% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000118282.9
ENSMUST00000232179.2
CDS GCA 72 bp TTCAAAAGCCACTCCCAGGTCTATGTGCACAAGCTCTaGCGACTGCTCGTTTATCAAGATATTCTGTACGTG +
Preference number: 6 (lower is better)
Translates to: FKSHSQVYVHKL*RLLVYQDILYV
Trigger: CACGTACAGAATATCTTGATAAACGAGCAGTCGGCAGAGCTTGTGCACATAGACCTGGGAGTGGCTTTTGAA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000118282.9
ENSMUST00000232179.2
CDS CCA 72 bp CTTGTTTGGACAGGTAGTCGGCAGCTAAAGGACTCATaGCACCAACAGCATTCTGGTTCTCTCCATAATCAT +
Preference number: 6 (lower is better)
Translates to: LVWTGSRQLKDS*HQQHSGSLHNH
Trigger: ATGATTATGGAGAGAACCAGAATGCTGTTGGTGCCATGAGTCCTTTAGCTGCCGACTACCTGTCCAAACAAG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000118282.9
ENSMUST00000232179.2
CDS CAA 72 bp GTGTGCTCTCCATGTCCACACTGCCCTGGCCTAGGTTaGTCACTATATGAAGGACATTGCTTAGAATCGTTT +
Preference number: 6 (lower is better)
Translates to: VCSPCPHCPGLG*SLYEGHCLESF
Trigger: AAACGATTCTAAGCAATGTCCTTCATATAGTGACAAACCTAGGCCAGGGCAGTGTGGACATGGAGAGCACAC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000118282.9
ENSMUST00000232179.2
CDS CAA 72 bp AGGTCATCACGGCCCTTCACAAGCTGTCTCCTTTCCTaGCCATCAGAACCCACACAATCTATTATTTTGGGT +
Preference number: 6 (lower is better)
Translates to: RSSRPFTSCLLS*PSEPTQSIILG
Trigger: ACCCAAAATAATAGATTGTGTGGGTTCTGATGGCAAGGAAAGGAGACAGCTTGTGAAGGGCCGTGATGACCT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000118282.9
ENSMUST00000232179.2
CDS CAA 90 bp GTAGGAAGAATTTCATCTCCTGCTTCACACACCCGTTTTCGGAAGTaGACAGCCAGAGACTTGAGGAAAATGTTAAGGGCTGCTAAGATG +
Preference number: 6 (lower is better)
Translates to: VGRISSPASHTRFRK*TARDLRKMLRAAKM
Trigger: CATCTTAGCAGCCCTTAACATTTTCCTCAAGTCTCTGGCTGTCAACTTCCGAAAACGGGTGTGTGAAGCAGGAGATGAAATTCTTCCTAC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000118282.9
ENSMUST00000232179.2
CDS CAA 90 bp AACACACAAGGGATAATGGTTGCAGAAGTTCAACAACATCTTCCATaGGCAATGAGTGCTCGTTTCCAGGGAGATCCTTCAGGAGCACTA +
Preference number: 6 (lower is better)
Translates to: NTQGIMVAEVQQHLP*AMSARFQGDPSGAL
Trigger: TAGTGCTCCTGAAGGATCTCCCTGGAAACGAGCACTCATTGCCAATGGAAGATGTTGTTGAACTTCTGCAACCATTATCCCTTGTGTGTT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000118282.9
ENSMUST00000232179.2
CDS TCA 72 bp CCACCATCTTCATCATCTTCCCCTGGATGTACTCCGTaGTCCAATGGCTTTTTCGTACAGGATGCTAAACTT +
Preference number: 6 (lower is better)
Translates to: PPSSSSSPGCTP*SNGFFVQDAKL
Trigger: AAGTTTAGCATCCTGTACGAAAAAGCCATTGGATCACGGAGTACATCCAGGGGAAGATGATGAAGATGGTGG
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000118282.9
ENSMUST00000232179.2
CDS GCA 72 bp TCTTTCCTTCTTTCTGTAGCTCTGTCATGCTCTAACTaGCGGCAGCAAATGAGCAGATCATTGAGTGCTAGA +
Preference number: 6 (lower is better)
Translates to: SFLLSVALSCSN*RQQMSRSLSAR
Trigger: TCTAGCACTCAATGATCTGCTCATTTGCTGCCGGCAGTTAGAGCATGACAGAGCTACAGAAAGAAGGAAAGA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000118282.9
ENSMUST00000232179.2
CDS CAA 72 bp GGGATAATGGTTGCAGAAGTTCAACAACATCTTCCATaGGCAATGAGTGCTCGTTTCCAGGGAGATCCTTCA +
Preference number: 6 (lower is better)
Translates to: GIMVAEVQQHLP*AMSARFQGDPS
Trigger: TGAAGGATCTCCCTGGAAACGAGCACTCATTGCCAATGGAAGATGTTGTTGAACTTCTGCAACCATTATCCC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000118282.9
ENSMUST00000232179.2
CDS CAA 72 bp CTCTTTCTAGTCTCAGTGTTTCTCTGCAGTAGTGTATaGCACATCTGGAAGACCTGCTGCATGACAGCATCT +
Preference number: 6 (lower is better)
Translates to: LFLVSVFLCSSV*HIWKTCCMTAS
Trigger: AGATGCTGTCATGCAGCAGGTCTTCCAGATGTGCAATACACTACTGCAGAGAAACACTGAGACTAGAAAGAG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000118282.9
ENSMUST00000132249.2
ENSMUST00000232179.2
CDS CAA 90 bp GTAGCCAAAATGTTTTTCAAACAGGTAGCAGCAGCAGATCGAATTTaGACACTGTCCTCTACCAGGGTATTGTTGAGGGCAGTCAGCATT +
Preference number: 6 (lower is better)
Translates to: VAKMFFKQVAAADRI*TLSSTRVLLRAVSI
Trigger: AATGCTGACTGCCCTCAACAATACCCTGGTAGAGGACAGTGTCAAAATTCGATCTGCTGCTGCTACCTGTTTGAAAAACATTTTGGCTAC
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000118282.9
ENSMUST00000232179.2
CDS TCA 72 bp AGAGACTTGAGGAAAATGTTAAGGGCTGCTAAGATGTaGCTTAAGCCAGGAGAGCTCTTTTCTTGTCTGGCA +
Preference number: 6 (lower is better)
Translates to: RDLRKMLRAAKM*LKPGELFSCLA
Trigger: TGCCAGACAAGAAAAGAGCTCTCCTGGCTTAAGTCACATCTTAGCAGCCCTTAACATTTTCCTCAAGTCTCT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000118282.9
ENSMUST00000232179.2
CDS TCA 72 bp GTAACAATAGCAGCCAAGAACACCCACCAAAAGACTTaGACACCGGACAAGGGTTTCAGAACTTGTAATCTC +
Preference number: 6 (lower is better)
Translates to: VTIAAKNTHQKT*TPDKGFRTCNL
Trigger: GAGATTACAAGTTCTGAAACCCTTGTCCGGTGTTCAAGTCTTTTGGTGGGTGTTCTTGGCTGCTATTGTTAC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000118282.9
ENSMUST00000232179.2
CDS TCA 72 bp TCTGCTGTCGTGTATGCATTGTTAAAAGATGTCTGCTaGAACTTCAGAGGGAGTGCTTTCAAGCTTCTGGAG +
Preference number: 6 (lower is better)
Translates to: SAVVYALLKDVC*NFRGSAFKLLE
Trigger: CTCCAGAAGCTTGAAAGCACTCCCTCTGAAGTTTCAGCAGACATCTTTTAACAATGCATACACGACAGCAGA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000118282.9
ENSMUST00000232179.2
CDS GCA 72 bp TGCCCTGGCCTAGGTTTGTCACTATATGAAGGACATTaGTTAGAATCGTTTTACAGACATCTTGGTCACGTC +
Preference number: 6 (lower is better)
Translates to: CPGLGLSLYEGH*LESFYRHLGHV
Trigger: GACGTGACCAAGATGTCTGTAAAACGATTCTAAGCAATGTCCTTCATATAGTGACAAACCTAGGCCAGGGCA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000118282.9
ENSMUST00000232179.2
CDS GCA 72 bp GAATGCTTAAAACAACTAGTGAAAAATCCTCGGACGTaGGCAGACAGCAGAGTTCTCCACGATTCATGTGTA +
Preference number: 6 (lower is better)
Translates to: ECLKQLVKNPRT*ADSRVLHDSCV
Trigger: TACACATGAATCGTGGAGAACTCTGCTGTCTGCGCACGTCCGAGGATTTTTCACTAGTTGTTTTAAGCATTC
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000118282.9
ENSMUST00000232179.2
CDS CCA 72 bp TATAGGACACATCTTTGTTATGCTGGACAGCTATGGTaGAGAAATCCAGAGGACCTATTTCTCCCAAACACC +
Preference number: 6 (lower is better)
Translates to: YRTHLCYAGQLW*RNPEDLFLPNT
Trigger: GGTGTTTGGGAGAAATAGGTCCTCTGGATTTCTCCACCATAGCTGTCCAGCATAACAAAGATGTGTCCTATA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000118282.9
ENSMUST00000232179.2
CDS CCA 72 bp ACTGAAGTTCTCTGTCTTCAGGTAACCCGTAGGCTTTaGTATAGGACACATCTTTGTTATGCTGGACAGCTA +
Preference number: 6 (lower is better)
Translates to: TEVLCLQVTRRL*YRTHLCYAGQL
Trigger: TAGCTGTCCAGCATAACAAAGATGTGTCCTATACCAAAGCCTACGGGTTACCTGAAGACAGAGAACTTCAGT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000118282.9
ENSMUST00000232179.2
CDS CCA 72 bp GAATCCGAATTTGCAGGAGTTGCTGAGCGGCTTGCTTaGGAGGAATGCTTAAAACAACTAGTGAAAAATCCT +
Preference number: 6 (lower is better)
Translates to: ESEFAGVAERLA*EECLKQLVKNP
Trigger: AGGATTTTTCACTAGTTGTTTTAAGCATTCCTCCCAAGCAAGCCGCTCAGCAACTCCTGCAAATTCGGATTC
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000118282.9
ENSMUST00000232179.2
CDS TCA 72 bp ATGTCCACACTGCCCTGGCCTAGGTTTGTCACTATATaGAGGACATTGCTTAGAATCGTTTTACAGACATCT +
Preference number: 6 (lower is better)
Translates to: MSTLPWPRFVTI*RTLLRIVLQTS
Trigger: AGATGTCTGTAAAACGATTCTAAGCAATGTCCTTCATATAGTGACAAACCTAGGCCAGGGCAGTGTGGACAT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000118282.9
ENSMUST00000232179.2
CDS TCA 72 bp AGTGAAATCCTAGAGATTAGATTATTGAGGACTTCGTaGAATCCTAGGCCTCCCGTCATTTTGGTCCCCATT +
Preference number: 6 (lower is better)
Translates to: SEILEIRLLRTS*NPRPPVILVPI
Trigger: AATGGGGACCAAAATGACGGGAGGCCTAGGATTTCACGAAGTCCTCAATAATCTAATCTCTAGGATTTCACT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000118282.9
ENSMUST00000232179.2
CDS GCA 72 bp AAAAGCTCGCCACTGTTTTCCAGTTCTCCAATTGCCTaGAATCTACTAAGTGTGGGATACAGCGAATATACA +
Preference number: 6 (lower is better)
Translates to: KSSPLFSSSPIA*NLLSVGYSEYT
Trigger: TGTATATTCGCTGTATCCCACACTTAGTAGATTGCAGGCAATTGGAGAACTGGAAAACAGTGGCGAGCTTTT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000118282.9
ENSMUST00000232179.2
CDS GCA 72 bp GTTTTCAATTCTCTGGTACTGAGTATCAGAGAACCTTaGCAACGAGAGAAAGGCCTTCATCTGTCCATTTCT +
Preference number: 6 (lower is better)
Translates to: VFNSLVLSIREP*QREKGLHLSIS
Trigger: AGAAATGGACAGATGAAGGCCTTTCTCTCGTTGGCAAGGTTCTCTGATACTCAGTACCAGAGAATTGAAAAC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000118282.9
ENSMUST00000232179.2
CDS CCA 72 bp GGAAAAAGCCAGAGGCAATCTTGTTTGGCGTATGCTTaGTATGTATACACAAGCAACTTGTACACAGATGCA +
Preference number: 6 (lower is better)
Translates to: GKSQRQSCLAYA*YVYTSNLYTDA
Trigger: TGCATCTGTGTACAAGTTGCTTGTGTATACATACCAAGCATACGCCAAACAAGATTGCCTCTGGCTTTTTCC
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000118282.9
ENSMUST00000232179.2
CDS CAA 72 bp AGGAAAAAGCCAGAGGCAATCTTGTTTGGCGTATGCTaGGTATGTATACACAAGCAACTTGTACACAGATGC +
Preference number: 6 (lower is better)
Translates to: RKKPEAILFGVC*VCIHKQLVHRC
Trigger: GCATCTGTGTACAAGTTGCTTGTGTATACATACCAAGCATACGCCAAACAAGATTGCCTCTGGCTTTTTCCT
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000118282.9
ENSMUST00000232179.2
CDS CAA 90 bp GCAAGGTACACTGTAATCAGTGGATTCCCTTTGTGTCACATAAGATaGAGAAATCTCCACGGATCTGGTATCTGCATCAAAAAGCTGGTA +
Preference number: 6 (lower is better)
Translates to: ARYTVISGFPLCHIR*RNLHGSGICIKKLV
Trigger: TACCAGCTTTTTGATGCAGATACCAGATCCGTGGAGATTTCTCAATCTTATGTGACACAAAGGGAATCCACTGATTACAGTGTACCTTGC
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000118282.9
ENSMUST00000232179.2
CDS GCA 72 bp CACATAAGATTGAGAAATCTCCACGGATCTGGTATCTaGATCAAAAAGCTGGTAACAGATATCTGCCATCAG +
Preference number: 6 (lower is better)
Translates to: HIRLRNLHGSGI*IKKLVTDICHQ
Trigger: CTGATGGCAGATATCTGTTACCAGCTTTTTGATGCAGATACCAGATCCGTGGAGATTTCTCAATCTTATGTG
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000118282.9
ENSMUST00000232179.2
CDS CCA 72 bp ATTTCATGGATTCATAAGCACCTTCTTCAGGAGCTCTaGCTCCTTGTGGATGATGGATATAAATCTGCAGTT +
Preference number: 6 (lower is better)
Translates to: ISWIHKHLLQEL*LLVDDGYKSAV
Trigger: AACTGCAGATTTATATCCATCATCCACAAGGAGCCAGAGCTCCTGAAGAAGGTGCTTATGAATCCATGAAAT
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000118282.9
ENSMUST00000232179.2
CDS CAA 72 bp CGGAAAGCAATCTACCAACAGGCTTTTCCAGCACTTTaGAATCTGATTAGCAATGGACTTCACCTCATCAAA +
Preference number: 6 (lower is better)
Translates to: RKAIYQQAFPAL*NLISNGLHLIK
Trigger: TTTGATGAGGTGAAGTCCATTGCTAATCAGATTCAAAAGTGCTGGAAAAGCCTGTTGGTAGATTGCTTTCCG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000118282.9
ENSMUST00000232179.2
CDS CAA 72 bp TCTTGCAGTCTCATCAAGACACGCTCAGCTACTTTGTaGAAACTCTGGTCAGTATCACTAAGACTTTGTTTG +
Preference number: 6 (lower is better)
Translates to: SCSLIKTRSATL*KLWSVSLRLCL
Trigger: CAAACAAAGTCTTAGTGATACTGACCAGAGTTTCAACAAAGTAGCTGAGCGTGTCTTGATGAGACTGCAAGA
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000118282.9
ENSMUST00000232179.2
CDS CAA 90 bp AGTATGGCAGCAACATCTGACAGAAGTCGGTTTTCACTTCACACATaGGCTTTAATAACTGGAGAATTTCACTGTTTATGCCTCCACTGT +
Preference number: 6 (lower is better)
Translates to: SMAATSDRSRFSLHT*ALITGEFHCLCLHC
Trigger: ACAGTGGAGGCATAAACAGTGAAATTCTCCAGTTATTAAAGCCAATGTGTGAAGTGAAAACCGACTTCTGTCAGATGTTGCTGCCATACT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000118282.9
ENSMUST00000232179.2
CDS CAA 90 bp CCTTTCAGTTTCTCTTGCAGTCTCATCAAGACACGCTCAGCTACTTaGTTGAAACTCTGGTCAGTATCACTAAGACTTTGTTTGCATTCT +
Preference number: 6 (lower is better)
Translates to: PFSFSCSLIKTRSAT*LKLWSVSLRLCLHS
Trigger: AGAATGCAAACAAAGTCTTAGTGATACTGACCAGAGTTTCAACAAAGTAGCTGAGCGTGTCTTGATGAGACTGCAAGAGAAACTGAAAGG
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000118282.9
ENSMUST00000232179.2
CDS CAA 90 bp TATTTTCCTTCTTTTGCAAGGTACACTGTAATCAGTGGATTCCCTTaGTGTCACATAAGATTGAGAAATCTCCACGGATCTGGTATCTGC +
Preference number: 6 (lower is better)
Translates to: YFPSFARYTVISGFP*CHIRLRNLHGSGIC
Trigger: GCAGATACCAGATCCGTGGAGATTTCTCAATCTTATGTGACACAAAGGGAATCCACTGATTACAGTGTACCTTGCAAAAGAAGGAAAATA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000118282.9
ENSMUST00000232179.2
CDS CAA 90 bp AAGAATCTTCGGAAAGCAATCTACCAACAGGCTTTTCCAGCACTTTaGAATCTGATTAGCAATGGACTTCACCTCATCAAAATGGCTTCT +
Preference number: 6 (lower is better)
Translates to: KNLRKAIYQQAFPAL*NLISNGLHLIKMAS
Trigger: AGAAGCCATTTTGATGAGGTGAAGTCCATTGCTAATCAGATTCAAAAGTGCTGGAAAAGCCTGTTGGTAGATTGCTTTCCGAAGATTCTT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000118282.9
ENSMUST00000232179.2
CDS TCA 72 bp AGTAAAACATCATGGATCAAGTATGGCAGCAACATCTaGCAGAAGTCGGTTTTCACTTCACACATTGGCTTT +
Preference number: 6 (lower is better)
Translates to: SKTSWIKYGSNI*QKSVFTSHIGF
Trigger: AAAGCCAATGTGTGAAGTGAAAACCGACTTCTGTCAGATGTTGCTGCCATACTTGATCCATGATGTTTTACT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000118282.9
ENSMUST00000232179.2
CDS GCA 72 bp TCTGGTATCTGCATCAAAAAGCTGGTAACAGATATCTaGCATCAGGTCAATCAGATTTTCCTTGACAGCAAT +
Preference number: 6 (lower is better)
Translates to: SGICIKKLVTDI*HQVNQIFLDSN
Trigger: ATTGCTGTCAAGGAAAATCTGATTGACCTGATGGCAGATATCTGTTACCAGCTTTTTGATGCAGATACCAGA
40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000118282.9
ENSMUST00000232179.2
CDS GCA 72 bp TTATCTTTAAAGCTGGAGTCCAACTTCTTGATCATCTaGTTGAGAATACTCAGAGCAAGACTCTGCTCCTTT +
Preference number: 6 (lower is better)
Translates to: LSLKLESNFLII*LRILRARLCSF
Trigger: AAAGGAGCAGAGTCTTGCTCTGAGTATTCTCAAGCAGATGATCAAGAAGTTGGACTCCAGCTTTAAAGATAA
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000118282.9
ENSMUST00000232179.2
CDS GCA 72 bp ATTGGCACTGAAATCATTTGGCCTGTATCTTCTATGTaGACCGTCTTCGCTGTTAACAAGATATTCACCAAT +
Preference number: 6 (lower is better)
Translates to: IGTEIIWPVSSM*TVFAVNKIFTN
Trigger: ATTGGTGAATATCTTGTTAACAGCGAAGACGGTGCACATAGAAGATACAGGCCAAATGATTTCAGTGCCAAT
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000118282.9
ENSMUST00000132249.2
ENSMUST00000232179.2
CDS CAA 72 bp TCTTTTGCAAGGTACACTGTAATCAGTGGATTCCCTTaGTGTCACATAAGATTGAGAAATCTCCACGGATCT +
Preference number: 6 (lower is better)
Translates to: SFARYTVISGFP*CHIRLRNLHGS
Trigger: AGATCCGTGGAGATTTCTCAATCTTATGTGACACAAAGGGAATCCACTGATTACAGTGTACCTTGCAAAAGA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000118282.9
ENSMUST00000232179.2
CDS CAA 90 bp TCACACCAGTATTTTCTCACAGAAAGAATGTCTTTGAGTAGTATGTaGCTACAGTCAGCTCCATACGTTAGACCATTAGATGAGTCTTTC +
Preference number: 6 (lower is better)
Translates to: SHQYFLTERMSLSSM*LQSAPYVRPLDESF
Trigger: GAAAGACTCATCTAATGGTCTAACGTATGGAGCTGACTGTAGCAACATACTACTCAAAGACATTCTTTCTGTGAGAAAATACTGGTGTGA
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000118282.9
ENSMUST00000150244.2
ENSMUST00000232179.2
CDS CCA 72 bp CTCATGCAATGTCATCAGCAACTCCACCACAATCTCTaGCAAATTACTAATGAATACTTGGTCAATCTGTTT +
Preference number: 6 (lower is better)
Translates to: LMQCHQQLHHNL*QITNEYLVNLF
Trigger: AAACAGATTGACCAAGTATTCATTAGTAATTTGCCAGAGATTGTGGTGGAGTTGCTGATGACATTGCATGAG
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000118282.9
ENSMUST00000232179.2
CDS CAA 72 bp GCAACATCTGACAGAAGTCGGTTTTCACTTCACACATaGGCTTTAATAACTGGAGAATTTCACTGTTTATGC +
Preference number: 6 (lower is better)
Translates to: ATSDRSRFSLHT*ALITGEFHCLC
Trigger: GCATAAACAGTGAAATTCTCCAGTTATTAAAGCCAATGTGTGAAGTGAAAACCGACTTCTGTCAGATGTTGC
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000118282.9
ENSMUST00000232179.2
CDS CAA 72 bp TCATTCTCTTTATCTTTAAAGCTGGAGTCCAACTTCTaGATCATCTGCTTGAGAATACTCAGAGCAAGACTC +
Preference number: 6 (lower is better)
Translates to: SFSLSLKLESNF*IICLRILRARL
Trigger: GAGTCTTGCTCTGAGTATTCTCAAGCAGATGATCAAGAAGTTGGACTCCAGCTTTAAAGATAAAGAGAATGA
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000118282.9
ENSMUST00000232179.2
CDS CAA 72 bp CTTTCCTTGCCATCAGAACCCACACAATCTATTATTTaGGGTAAATTTAAGCCTCCAGCTAAGCGAAATTCT +
Preference number: 6 (lower is better)
Translates to: LSLPSEPTQSII*GKFKPPAKRNS
Trigger: AGAATTTCGCTTAGCTGGAGGCTTAAATTTACCCAAAATAATAGATTGTGTGGGTTCTGATGGCAAGGAAAG
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000118282.9
ENSMUST00000232179.2
CDS CAA 90 bp AGGCAATCTTGTTTGGCGTATGCTTGGTATGTATACACAAGCAACTaGTACACAGATGCATCACATTTCTCAATGAACCAATTCTTGATT +
Preference number: 6 (lower is better)
Translates to: RQSCLAYAWYVYTSN*YTDASHFSMNQFLI
Trigger: AATCAAGAATTGGTTCATTGAGAAATGTGATGCATCTGTGTACAAGTTGCTTGTGTATACATACCAAGCATACGCCAAACAAGATTGCCT
38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000118282.9
ENSMUST00000232179.2
CDS CAA 90 bp ATAAGCTTTGATGTTAATAATCGTAGGAAAAAGCCAGAGGCAATCTaGTTTGGCGTATGCTTGGTATGTATACACAAGCAACTTGTACAC +
Preference number: 6 (lower is better)
Translates to: ISFDVNNRRKKPEAI*FGVCLVCIHKQLVH
Trigger: GTGTACAAGTTGCTTGTGTATACATACCAAGCATACGCCAAACAAGATTGCCTCTGGCTTTTTCCTACGATTATTAACATCAAAGCTTAT
38% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000118282.9
ENSMUST00000232179.2
CDS CAA 90 bp AGCTGTCTCCTTTCCTTGCCATCAGAACCCACACAATCTATTATTTaGGGTAAATTTAAGCCTCCAGCTAAGCGAAATTCTGTTTTAAAT +
Preference number: 6 (lower is better)
Translates to: SCLLSLPSEPTQSII*GKFKPPAKRNSVLN
Trigger: ATTTAAAACAGAATTTCGCTTAGCTGGAGGCTTAAATTTACCCAAAATAATAGATTGTGTGGGTTCTGATGGCAAGGAAAGGAGACAGCT
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000118282.9
ENSMUST00000232179.2
CDS TCA 72 bp TTGAGATTTTGCTGGACAGAGAAGCCAACACTAGACTaGAATTTTTCTACAGCATACTCTTTGACAGTAGTT +
Preference number: 6 (lower is better)
Translates to: LRFCWTEKPTLD*NFSTAYSLTVV
Trigger: AACTACTGTCAAAGAGTATGCTGTAGAAAAATTTCAGTCTAGTGTTGGCTTCTCTGTCCAGCAAAATCTCAA
38% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000118282.9
ENSMUST00000232179.2
CDS GCA 72 bp TGCTTGGTATGTATACACAAGCAACTTGTACACAGATaGATCACATTTCTCAATGAACCAATTCTTGATTCC +
Preference number: 6 (lower is better)
Translates to: CLVCIHKQLVHR*ITFLNEPILDS
Trigger: GGAATCAAGAATTGGTTCATTGAGAAATGTGATGCATCTGTGTACAAGTTGCTTGTGTATACATACCAAGCA
38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000118282.9
ENSMUST00000232179.2
CDS CCA 72 bp TTGTCCTTTTACATTAAGAATTGCCCATTCGGAATATaGATCAGCCTCAAGCAATGTTTGAAGACACTTTAC +
Preference number: 6 (lower is better)
Translates to: LSFYIKNCPFGI*ISLKQCLKTLY
Trigger: GTAAAGTGTCTTCAAACATTGCTTGAGGCTGATCCATATTCCGAATGGGCAATTCTTAATGTAAAAGGACAA
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000118282.9
ENSMUST00000232179.2
CDS CCA 72 bp CTTCACCTCATCAAAATGGCTTCTGATTACCAAATGTaGGATCAAAATCTTGTAACAAGACCGATAGAAATC +
Preference number: 6 (lower is better)
Translates to: LHLIKMASDYQM*DQNLVTRPIEI
Trigger: GATTTCTATCGGTCTTGTTACAAGATTTTGATCCCACATTTGGTAATCAGAAGCCATTTTGATGAGGTGAAG
38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000118282.9
ENSMUST00000232179.2
CDS CCA 72 bp TGTACTTTTGGTTATTCGACTCCTTCTTGTTGTCTCTaGTTTGCTCAAAAATTCATCTTTGTTCGCATTTGC +
Preference number: 6 (lower is better)
Translates to: CTFGYSTPSCCL*FAQKFIFVRIC
Trigger: GCAAATGCGAACAAAGATGAATTTTTGAGCAAACCAGAGACAACAAGAAGGAGTCGAATAACCAAAAGTACA
38% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000118282.9
ENSMUST00000232179.2
CDS CAA 90 bp TCAGGAAAGGGATCCAAAAGCTTAATTGTGACAGAGAGGTTTTTATaGTCTTTGTTATCTATCACTAAGTACTTCAACAGGTCCAATACC +
Preference number: 6 (lower is better)
Translates to: SGKGSKSLIVTERFL*SLLSITKYFNRSNT
Trigger: GGTATTGGACCTGTTGAAGTACTTAGTGATAGATAACAAAGACAATAAAAACCTCTCTGTCACAATTAAGCTTTTGGATCCCTTTCCTGA
37% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000118282.9
ENSMUST00000232179.2
CDS CAA 90 bp TGCCACTCAGAAATTCCACAAATAGCTGAATTATATTGCTTAATTTaGAATATTGCTCTTTCAGGGAGCTGTGTGTTCTTGAAGGTTCGA +
Preference number: 6 (lower is better)
Translates to: CHSEIPQIAELYCLI*NIALSGSCVFLKVR
Trigger: TCGAACCTTCAAGAACACACAGCTCCCTGAAAGAGCAATATTCAAAATTAAGCAATATAATTCAGCTATTTGTGGAATTTCTGAGTGGCA
37% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000118282.9
ENSMUST00000232179.2