RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for ATG5 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000038160

Ensembl transcript IDs: ENSMUST00000039286.5

Found 58 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR CCA 90 bp CAGCCCTGCCCGGGCGCCCTATCTCTCATGGAATCTTCTCCTCCTTaGCTTGCAGCAGCCCGGGTTTCTGTTGCCTCCACTGAACTTGAC +
Preference number: 1 (lower is better)
Translates to: QPCPGALSLMESSPP*LAAARVSVASTELD
Trigger: GTCAAGTTCAGTGGAGGCAACAGAAACCCGGGCTGCTGCAAGCCAAGGAGGAGAAGATTCCATGAGAGATAGGGCGCCCGGGCAGGGCTG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000039286.5
3UTR CCA 90 bp AAGCAGTGGTGCACACTCAGCCCTGCCCGGGCGCCCTATCTCTCATaGAATCTTCTCCTCCTTGGCTTGCAGCAGCCCGGGTTTCTGTTG +
Preference number: 1 (lower is better)
Translates to: KQWCTLSPARAPYLS*NLLLLGLQQPGFLL
Trigger: CAACAGAAACCCGGGCTGCTGCAAGCCAAGGAGGAGAAGATTCCATGAGAGATAGGGCGCCCGGGCAGGGCTGAGTGTGCACCACTGCTT
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000039286.5
3UTR GCA 90 bp AGTGGTCCTGTGTGTCTCAGCGAAGCAGTGGTGCACACTCAGCCCTaGCCGGGCGCCCTATCTCTCATGGAATCTTCTCCTCCTTGGCTT +
Preference number: 1 (lower is better)
Translates to: SGPVCLSEAVVHTQP*PGALSLMESSPPWL
Trigger: AAGCCAAGGAGGAGAAGATTCCATGAGAGATAGGGCGCCCGGGCAGGGCTGAGTGTGCACCACTGCTTCGCTGAGACACACAGGACCACT
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000039286.5
3UTR GCA 90 bp TCCAGTAACCTCTGGATGTTTTTGGTAATGATAAGGAAAAGCTACTaGAGTCTAGAGACAGGTCACCTGCAGGCTTTAAAGACTGGCTGC +
Preference number: 1 (lower is better)
Translates to: SSNLWMFLVMIRKSY*SLETGHLQALKTGC
Trigger: GCAGCCAGTCTTTAAAGCCTGCAGGTGACCTGTCTCTAGACTGCAGTAGCTTTTCCTTATCATTACCAAAAACATCCAGAGGTTACTGGA
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000039286.5
3UTR GCA 90 bp TTAAGTCTAATTCTATTGAAAATTCAACCAATGTTTCCATTCTCCTaGCTAAGGTTCCACCATGGTCACCTTAGGAAATACCCCACTTAT +
Preference number: 1 (lower is better)
Translates to: LSLILLKIQPMFPFS*LRFHHGHLRKYPTY
Trigger: ATAAGTGGGGTATTTCCTAAGGTGACCATGGTGGAACCTTAGGCAGGAGAATGGAAACATTGGTTGAATTTTCAATAGAATTAGACTTAA
38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000039286.5
3UTR CAA 90 bp CCTGCCCGGGCGCCCTATCTCTCATGGAATCTTCTCCTCCTTGGCTaGCAGCAGCCCGGGTTTCTGTTGCCTCCACTGAACTTGACTGAA +
Preference number: 2 (lower is better)
Translates to: PARAPYLSWNLLLLG*QQPGFLLPPLNLTE
Trigger: TTCAGTCAAGTTCAGTGGAGGCAACAGAAACCCGGGCTGCTGCAAGCCAAGGAGGAGAAGATTCCATGAGAGATAGGGCGCCCGGGCAGG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000039286.5
3UTR CAA 90 bp CTCCTTGGCTTGCAGCAGCCCGGGTTTCTGTTGCCTCCACTGAACTaGACTGAAGCAAGGGTGTCACGCCTCGTTGTCCTGACTCAAGGT +
Preference number: 2 (lower is better)
Translates to: LLGLQQPGFLLPPLN*TEARVSRLVVLTQG
Trigger: ACCTTGAGTCAGGACAACGAGGCGTGACACCCTTGCTTCAGTCAAGTTCAGTGGAGGCAACAGAAACCCGGGCTGCTGCAAGCCAAGGAG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000039286.5
3UTR CAA 90 bp TCATGGAATCTTCTCCTCCTTGGCTTGCAGCAGCCCGGGTTTCTGTaGCCTCCACTGAACTTGACTGAAGCAAGGGTGTCACGCCTCGTT +
Preference number: 2 (lower is better)
Translates to: SWNLLLLGLQQPGFL*PPLNLTEARVSRLV
Trigger: AACGAGGCGTGACACCCTTGCTTCAGTCAAGTTCAGTGGAGGCAACAGAAACCCGGGCTGCTGCAAGCCAAGGAGGAGAAGATTCCATGA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000039286.5
3UTR-3UTR TCA 90 bp AGTCTAGAGACAGGTCACCTGCAGGCTTTAAAGACTGGCTGCCAGGGGCCACAACCCTTGCTATGCCAGTaGGAAATGGGAACACAGAAG +
Preference number: 2 (lower is better)
Translates to: SLETGHLQALKTGCQGPQPLLCQ*EMGTQK
Trigger: CTTCTGTGTTCCCATTTCTCACTGGCATAGCAAGGG...TTGTGGCCCCTGGCAGCCAGTCTTTAAAGCCTGCAGGTGACCTGTCTCTAGACT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000039286.5
3UTR-3UTR TCA 90 bp AGGAGTCTCCAAGCAGCCATCGAGAGAGTGCAGCAAACTTTCCTTACTGTGGTATCCTGTGACAGCTCCTaGGACAAGTCGCCTTATGCC +
Preference number: 2 (lower is better)
Translates to: RSLQAAIERVQQTFLTVVSCDSS*DKSPYA
Trigger: GGCATAAGGCGACTTGTCTCAGGAGCTGTCACAGGA...TACCACAGTAAGGAAAGTTTGCTGCACTCTCTCGATGGCTGCTTGGAGACTCCT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000039286.5
3UTR-3UTR GCA 90 bp CAAATCAACAGCAGGAGTCTCCAAGCAGCCATCGAGAGAGTGCAGCAAACTTTCACGAGAAGAGGAGGCTaGAGTGGTCCTGTGTGTCTC +
Preference number: 2 (lower is better)
Translates to: QINSRSLQAAIERVQQTFTRRGG*SGPVCL
Trigger: GAGACACACAGGACCACTGCAGCCTCCTCTTCTCGT...GAAAGTTTGCTGCACTCTCTCGATGGCTGCTTGGAGACTCCTGCTGTTGATTTG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000039286.5
3UTR-3UTR TCA 90 bp CAAATCAACAGCAGGAGTCTCCAAGCAGCCATCGAGAGAGTGCAGCAAACTTTCTCCACTGAACTTGACTaGAGCAAGGGTGTCACGCCT +
Preference number: 2 (lower is better)
Translates to: QINSRSLQAAIERVQQTFSTELD*SKGVTP
Trigger: AGGCGTGACACCCTTGCTTCAGTCAAGTTCAGTGGA...GAAAGTTTGCTGCACTCTCTCGATGGCTGCTTGGAGACTCCTGCTGTTGATTTG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000039286.5
3UTR-3UTR TCA 90 bp TCTAGAGACAGGTCACCTGCAGGCTTTAAAGACTGGCTGCCAGGGGCCACAATGTGGCATACTATGATTTaGCAGGTTTACAGTGACCAA +
Preference number: 2 (lower is better)
Translates to: SRDRSPAGFKDWLPGATMWHTMI*QVYSDQ
Trigger: TTGGTCACTGTAAACCTGTCAAATCATAGTATGCCA...CATTGTGGCCCCTGGCAGCCAGTCTTTAAAGCCTGCAGGTGACCTGTCTCTAGA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000039286.5
3UTR-3UTR TCA 90 bp TCTTTTAGCATACTCAGATGGGTTGACATTCAATGTGGACAGCAAGCTAGCTCACACGCCTCGTTGTCCTaGCTCAAGGTGGTTCCATCT +
Preference number: 2 (lower is better)
Translates to: SFSILRWVDIQCGQQASSHASLS*LKVVPS
Trigger: AGATGGAACCACCTTGAGTCAGGACAACGAGGCGTG...TGAGCTAGCTTGCTGTCCACATTGAATGTCAACCCATCTGAGTATGCTAAAAGA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000039286.5
3UTR-3UTR GCA 90 bp CAAATCAACAGCAGGAGTCTCCAAGCAGCCATCGAGAGAGTGCAGCAAACTTTCATAAGGAAAAGCTACTaGAGTCTAGAGACAGGTCAC +
Preference number: 2 (lower is better)
Translates to: QINSRSLQAAIERVQQTFIRKSY*SLETGH
Trigger: GTGACCTGTCTCTAGACTGCAGTAGCTTTTCCTTAT...GAAAGTTTGCTGCACTCTCTCGATGGCTGCTTGGAGACTCCTGCTGTTGATTTG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000039286.5
3UTR-3UTR CCA 90 bp TTAGCATACTCAGATGGGTTGACATTCAATGTGGACAGCAAGCTAGCTCACAAATGTCCTGACTCAAGGTaGTTCCATCTAGCGAGGAGG +
Preference number: 2 (lower is better)
Translates to: LAYSDGLTFNVDSKLAHKCPDSR*FHLARR
Trigger: CCTCCTCGCTAGATGGAACCACCTTGAGTCAGGACA...TTTGTGAGCTAGCTTGCTGTCCACATTGAATGTCAACCCATCTGAGTATGCTAA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000039286.5
3UTR CAA 90 bp AACTTTCCTTACTGTGGTAGGAGTTCCAGTAACCTCTGGATGTTTTaGGTAATGATAAGGAAAAGCTACTGCAGTCTAGAGACAGGTCAC +
Preference number: 2 (lower is better)
Translates to: NFPYCGRSSSNLWMF*VMIRKSYCSLETGH
Trigger: GTGACCTGTCTCTAGACTGCAGTAGCTTTTCCTTATCATTACCAAAAACATCCAGAGGTTACTGGAACTCCTACCACAGTAAGGAAAGTT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000039286.5
3UTR-3UTR TCA 90 bp TCTTTTAGCATACTCAGATGGGTTGACATTCAATGTGGACAGCAAGCTAGCTCAATACTTGGCATACTATaGTTTGACAGGTTTACAGTG +
Preference number: 2 (lower is better)
Translates to: SFSILRWVDIQCGQQASSILGIL*FDRFTV
Trigger: CACTGTAAACCTGTCAAATCATAGTATGCCAAGTAT...TGAGCTAGCTTGCTGTCCACATTGAATGTCAACCCATCTGAGTATGCTAAAAGA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000039286.5
3UTR CCA 72 bp GAGGCTGCAGTGGTCCTGTGTGTCTCAGCGAAGCAGTaGTGCACACTCAGCCCTGCCCGGGCGCCCTATCTC +
Preference number: 3 (lower is better)
Translates to: EAAVVLCVSAKQ*CTLSPARAPYL
Trigger: GAGATAGGGCGCCCGGGCAGGGCTGAGTGTGCACCACTGCTTCGCTGAGACACACAGGACCACTGCAGCCTC
65% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000039286.5
3UTR GCA 72 bp GCTGCAGTGGTCCTGTGTGTCTCAGCGAAGCAGTGGTaGACACTCAGCCCTGCCCGGGCGCCCTATCTCTCA +
Preference number: 3 (lower is better)
Translates to: AAVVLCVSAKQW*TLSPARAPYLS
Trigger: TGAGAGATAGGGCGCCCGGGCAGGGCTGAGTGTGCACCACTGCTTCGCTGAGACACACAGGACCACTGCAGC
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000039286.5
3UTR CCA 72 bp TGCACACTCAGCCCTGCCCGGGCGCCCTATCTCTCATaGAATCTTCTCCTCCTTGGCTTGCAGCAGCCCGGG +
Preference number: 3 (lower is better)
Translates to: CTLSPARAPYLS*NLLLLGLQQPG
Trigger: CCCGGGCTGCTGCAAGCCAAGGAGGAGAAGATTCCATGAGAGATAGGGCGCCCGGGCAGGGCTGAGTGTGCA
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000039286.5
3UTR CCA 72 bp CCGGGCGCCCTATCTCTCATGGAATCTTCTCCTCCTTaGCTTGCAGCAGCCCGGGTTTCTGTTGCCTCCACT +
Preference number: 3 (lower is better)
Translates to: PGALSLMESSPP*LAAARVSVAST
Trigger: AGTGGAGGCAACAGAAACCCGGGCTGCTGCAAGCCAAGGAGGAGAAGATTCCATGAGAGATAGGGCGCCCGG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000039286.5
3UTR-3UTR CAA 90 bp CAAATCAACAGCAGGAGTCTCCAAGCAGCCATCGAGAGAGTGCAGCAAACTTTCGGAATCTTCTCCTCCTaGGCTTGCAGCAGCCCGGGT +
Preference number: 3 (lower is better)
Translates to: QINSRSLQAAIERVQQTFGIFSS*ACSSPG
Trigger: ACCCGGGCTGCTGCAAGCCAAGGAGGAGAAGATTCC...GAAAGTTTGCTGCACTCTCTCGATGGCTGCTTGGAGACTCCTGCTGTTGATTTG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000039286.5
3UTR TCA 72 bp CAAGTCGCCTTATGCCCCGCACCCTTGCTATGCCAGTaGGAAATGGGAACACAGAAGAAAAAGTGGCTTACT +
Preference number: 3 (lower is better)
Translates to: QVALCPAPLLCQ*EMGTQKKKWLT
Trigger: AGTAAGCCACTTTTTCTTCTGTGTTCCCATTTCTCACTGGCATAGCAAGGGTGCGGGGCATAAGGCGACTTG
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000039286.5
3UTR GCA 72 bp CTCTGGATGTTTTTGGTAATGATAAGGAAAAGCTACTaGAGTCTAGAGACAGGTCACCTGCAGGCTTTAAAG +
Preference number: 3 (lower is better)
Translates to: LWMFLVMIRKSY*SLETGHLQALK
Trigger: CTTTAAAGCCTGCAGGTGACCTGTCTCTAGACTGCAGTAGCTTTTCCTTATCATTACCAAAAACATCCAGAG
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000039286.5
3UTR-3UTR CAA 90 bp TTAGCATACTCAGATGGGTTGACATTCAATGTGGACAGCAAGCTAGCTCACAAAAGATTCAGGAGGTCTTaGAAAAGTGACAAACTGTAT +
Preference number: 3 (lower is better)
Translates to: LAYSDGLTFNVDSKLAHKRFRRS*KSDKLY
Trigger: ATACAGTTTGTCACTTTTCAAAGACCTCCTGAATCT...TTTGTGAGCTAGCTTGCTGTCCACATTGAATGTCAACCCATCTGAGTATGCTAA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000039286.5
CDS-3UTR GCA 90 bp GCAGTGGTGCACACTCAGCCCTGCCCGGGCGCCCTATCTCTCATGGAATCTTCTGTGCAGCTGTCCATCTaGGGCCACAGGCCGGAACAG +
Preference number: 4 (lower is better)
Translates to: AVVHTQPCPGALSLMESSVQLSI*GHRPEQ
Trigger: CTGTTCCGGCCTGTGGCCGCAGATGGACAGCTGCAC...AGAAGATTCCATGAGAGATAGGGCGCCCGGGCAGGGCTGAGTGTGCACCACTGC
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000039286.5
3UTR CAA 72 bp CCCGGGCGCCCTATCTCTCATGGAATCTTCTCCTCCTaGGCTTGCAGCAGCCCGGGTTTCTGTTGCCTCCAC +
Preference number: 4 (lower is better)
Translates to: PGRPISHGIFSS*ACSSPGFCCLH
Trigger: GTGGAGGCAACAGAAACCCGGGCTGCTGCAAGCCAAGGAGGAGAAGATTCCATGAGAGATAGGGCGCCCGGG
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000039286.5
3UTR CAA 72 bp TTGCAGCAGCCCGGGTTTCTGTTGCCTCCACTGAACTaGACTGAAGCAAGGGTGTCACGCCTCGTTGTCCTG +
Preference number: 4 (lower is better)
Translates to: LQQPGFLLPPLN*TEARVSRLVVL
Trigger: CAGGACAACGAGGCGTGACACCCTTGCTTCAGTCAAGTTCAGTGGAGGCAACAGAAACCCGGGCTGCTGCAA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000039286.5
3UTR CAA 72 bp GCGCCCTATCTCTCATGGAATCTTCTCCTCCTTGGCTaGCAGCAGCCCGGGTTTCTGTTGCCTCCACTGAAC +
Preference number: 4 (lower is better)
Translates to: APYLSWNLLLLG*QQPGFLLPPLN
Trigger: GTTCAGTGGAGGCAACAGAAACCCGGGCTGCTGCAAGCCAAGGAGGAGAAGATTCCATGAGAGATAGGGCGC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000039286.5
CDS-3UTR CCA 90 bp AGCTCACAAATCAACAGCAGGAGTCTCCAAGCAGCCATCGAGAGAGTGCAGCAAGGCCGGAACAGCTTCTaGATGAAAGGCCGCTCCGTC +
Preference number: 4 (lower is better)
Translates to: SSQINSRSLQAAIERVQQGRNSF*MKGRSV
Trigger: GACGGAGCGGCCTTTCATCCAGAAGCTGTTCCGGCC...TTGCTGCACTCTCTCGATGGCTGCTTGGAGACTCCTGCTGTTGATTTGTGAGCT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000039286.5
CDS-3UTR GCA 90 bp TTGACTGAAGCAAGGGTGTCACGCCTCGTTGTCCTGACTCAAGGTGGTTCCATCTGCTCGCTCAGCCACTaGAGAGGGGTTTCCAGCATT +
Preference number: 4 (lower is better)
Translates to: LTEARVSRLVVLTQGGSICSLSH*RGVSSI
Trigger: AATGCTGGAAACCCCTCTGCAGTGGCTGAGCGAGCA...GATGGAACCACCTTGAGTCAGGACAACGAGGCGTGACACCCTTGCTTCAGTCAA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000039286.5
CDS-3UTR CCA 90 bp GCCCTATCTCTCATGGAATCTTCTCCTCCTTGGCTTGCAGCAGCCCGGGTTTCTGAGAGTAAAGCAAGTTaGAATTCGTCCAAACCACAC +
Preference number: 4 (lower is better)
Translates to: ALSLMESSPPWLAAARVSESKAS*NSSKPH
Trigger: GTGTGGTTTGGACGAATTCCAACTTGCTTTACTCTC...AGAAACCCGGGCTGCTGCAAGCCAAGGAGGAGAAGATTCCATGAGAGATAGGGC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000039286.5
CDS-3UTR GCA 90 bp CGAGAGAGTGCAGCAAACTTTCCTTACTGTGGTAGGAGTTCCAGTAACCTCTGGTCAAATCTGTCATTCTaGAGTCCCATCCAGAGCTGC +
Preference number: 4 (lower is better)
Translates to: RESAANFPYCGRSSSNLWSNLSF*SPIQSC
Trigger: GCAGCTCTGGATGGGACTGCAGAATGACAGATTTGA...CCAGAGGTTACTGGAACTCCTACCACAGTAAGGAAAGTTTGCTGCACTCTCTCG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000039286.5
CDS-3UTR GCA 90 bp GCATACTCAGATGGGTTGACATTCAATGTGGACAGCAAGCTAGCTCACAAATCAAGATCTCCAAGTGTGTaGAGCTGTCCATCTGCGGCC +
Preference number: 4 (lower is better)
Translates to: AYSDGLTFNVDSKLAHKSRSPSV*SCPSAA
Trigger: GGCCGCAGATGGACAGCTGCACACACTTGGAGATCT...TGATTTGTGAGCTAGCTTGCTGTCCACATTGAATGTCAACCCATCTGAGTATGC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000039286.5
CDS-3UTR CCA 90 bp CAAATCAACAGCAGGAGTCTCCAAGCAGCCATCGAGAGAGTGCAGCAAACTTTCTTGATGGCCCAAAACTaGTCAAATCTGTCATTCTGC +
Preference number: 4 (lower is better)
Translates to: QINSRSLQAAIERVQQTFLMAQN*SNLSFC
Trigger: GCAGAATGACAGATTTGACCAGTTTTGGGCCATCAA...GAAAGTTTGCTGCACTCTCTCGATGGCTGCTTGGAGACTCCTGCTGTTGATTTG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000039286.5
CDS-3UTR CCA 90 bp CAAATCAACAGCAGGAGTCTCCAAGCAGCCATCGAGAGAGTGCAGCAAACTTTCATGAAGAAAGTTATCTaGGTAGCTCAGATGCTCGCT +
Preference number: 4 (lower is better)
Translates to: QINSRSLQAAIERVQQTFMKKVI*VAQMLA
Trigger: AGCGAGCATCTGAGCTACCCAGATAACTTTCTTCAT...GAAAGTTTGCTGCACTCTCTCGATGGCTGCTTGGAGACTCCTGCTGTTGATTTG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000039286.5
CDS-3UTR CCA 90 bp TGTGGTAGGAGTTCCAGTAACCTCTGGATGTTTTTGGTAATGATAAGGAAAAGCAGGGGTTTCCAGCATTaGCTCTATCCCGTGAATCAT +
Preference number: 4 (lower is better)
Translates to: CGRSSSNLWMFLVMIRKSRGFQH*LYPVNH
Trigger: ATGATTCACGGGATAGAGCCAATGCTGGAAACCCCT...GCTTTTCCTTATCATTACCAAAAACATCCAGAGGTTACTGGAACTCCTACCACA
43% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000039286.5
CDS-3UTR TCA 90 bp ACAGAAGAAAAAGTGGCTTACTCTATGAGATTCAGGAGGTCTTTGAAAAGTGACCCAACGTCAAATAGCTaGCTCTTGGCAAAAGCAAAT +
Preference number: 4 (lower is better)
Translates to: TEEKVAYSMRFRRSLKSDPTSNS*LLAKAN
Trigger: ATTTGCTTTTGCCAAGAGTCAGCTATTTGACGTTGG...GTCACTTTTCAAAGACCTCCTGAATCTCATAGAGTAAGCCACTTTTTCTTCTGT
40% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000039286.5
CDS-3UTR GCA 90 bp ACAGAAGAAAAAGTGGCTTACTCTATGAGATTCAGGAGGTCTTTGAAAAGTGACGCCATTTCAGGGGTGTaGCTTCATATTCAAACCATA +
Preference number: 4 (lower is better)
Translates to: TEEKVAYSMRFRRSLKSDAISGV*LHIQTI
Trigger: TATGGTTTGAATATGAAGGCACACCCCTGAAATGGC...GTCACTTTTCAAAGACCTCCTGAATCTCATAGAGTAAGCCACTTTTTCTTCTGT
40% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000039286.5
3UTR CAA 72 bp TTCCACCATGGTCACCTTAGGAAATACCCCACTTATTaGTTAATCAGAAATACAAACTGTGGCACATTTCCA +
Preference number: 4 (lower is better)
Translates to: FHHGHLRKYPTY*LIRNTNCGTFP
Trigger: TGGAAATGTGCCACAGTTTGTATTTCTGATTAACAAATAAGTGGGGTATTTCCTAAGGTGACCATGGTGGAA
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000039286.5
CDS-3UTR CCA 90 bp AGACAGATTTTTCAAGTCACAGTAATAAATCCTGTGACAGCTCCTGAGACAAGTCAAAAGCAAATAGTATaGTTCTGCTTCTCTTTCAGT +
Preference number: 4 (lower is better)
Translates to: RQIFQVTVINPVTAPETSQKQIV*FCFSFS
Trigger: ACTGAAAGAGAAGCAGAACCATACTATTTGCTTTTG...ACTTGTCTCAGGAGCTGTCACAGGATTTATTACTGTGACTTGAAAAATCTGTCT
37% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000039286.5
CDS TCA 90 bp TCTTCTCTCCATCTTCAGGGGCGACTGCGGAAGGACAGACTTCTCTaGGGAGATCTCCAAGTGTGTGCAGCTGTCCATCTGCGGCCACAG +
Preference number: 5 (lower is better)
Translates to: SSLHLQGRLRKDRLL*GDLQVCAAVHLRPQ
Trigger: CTGTGGCCGCAGATGGACAGCTGCACACACTTGGAGATCTCCTCAGAGAAGTCTGTCCTTCCGCAGTCGCCCCTGAAGATGGAGAGAAGA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000039286.5
CDS CCA 90 bp GTAGCTCAGATGCTCGCTCAGCCACTGCAGAGGGGTTTCCAGCATTaGCTCTATCCCGTGAATCATCACCTGGCTCCTCTTCTCTCCATC +
Preference number: 5 (lower is better)
Translates to: VAQMLAQPLQRGFQH*LYPVNHHLAPLLSI
Trigger: GATGGAGAGAAGAGGAGCCAGGTGATGATTCACGGGATAGAGCCAATGCTGGAAACCCCTCTGCAGTGGCTGAGCGAGCATCTGAGCTAC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000039286.5
CDS-3UTR CAA 90 bp TATCTCTCATGGAATCTTCTCCTCCTTGGCTTGCAGCAGCCCGGGTTTCTGTTGTCCATGAGTTTCCGGTaGATGGCCCAAAACTGGTCA +
Preference number: 5 (lower is better)
Translates to: YLSWNLLLLGLQQPGFLLSMSFR*MAQNWS
Trigger: TGACCAGTTTTGGGCCATCAACCGGAAACTCATGGA...CAACAGAAACCCGGGCTGCTGCAAGCCAAGGAGGAGAAGATTCCATGAGAGATA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000039286.5
CDS-3UTR CAA 90 bp TTGACTGAAGCAAGGGTGTCACGCCTCGTTGTCCTGACTCAAGGTGGTTCCATCAAGTGCTTTTTCACTTaGTCAGTTACCAACGTCAAA +
Preference number: 5 (lower is better)
Translates to: LTEARVSRLVVLTQGGSIKCFFT*SVTNVK
Trigger: TTTGACGTTGGTAACTGACAAAGTGAAAAAGCACTT...GATGGAACCACCTTGAGTCAGGACAACGAGGCGTGACACCCTTGCTTCAGTCAA
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000039286.5
CDS-3UTR CAA 90 bp TCTTTTAGCATACTCAGATGGGTTGACATTCAATGTGGACAGCAAGCTAGCTCAGAGGGGTTTCCAGCATaGGCTCTATCCCGTGAATCA +
Preference number: 5 (lower is better)
Translates to: SFSILRWVDIQCGQQASSEGFPA*ALSRES
Trigger: TGATTCACGGGATAGAGCCAATGCTGGAAACCCCTC...TGAGCTAGCTTGCTGTCCACATTGAATGTCAACCCATCTGAGTATGCTAAAAGA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000039286.5
CDS-3UTR CAA 90 bp AGAAGACAGATTTTTCAAGTCACAGTAATAAATCCTGTGACAGCTCCTGAGACAGCCTCAACCGCATCCTaGGATGGACAGTGTAGAAGG +
Preference number: 5 (lower is better)
Translates to: RRQIFQVTVINPVTAPETASTAS*DGQCRR
Trigger: CCTTCTACACTGTCCATCCAAGGATGCGGTTGAGGC...TGTCTCAGGAGCTGTCACAGGATTTATTACTGTGACTTGAAAAATCTGTCTTCT
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000039286.5
CDS TCA 90 bp CTTTTATGCTTTAAAGCATCAGCTTCTTTCATACACGACATAAAGTaGGCCTCAACCGCATCCTTGGATGGACAGTGTAGAAGGTCCTTT +
Preference number: 5 (lower is better)
Translates to: LLCFKASASFIHDIK*ASTASLDGQCRRSF
Trigger: AAAGGACCTTCTACACTGTCCATCCAAGGATGCGGTTGAGGCTCACTTTATGTCGTGTATGAAAGAAGCTGATGCTTTAAAGCATAAAAG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000039286.5
CDS CCA 90 bp TGCTTCTCTTTCAGTTATCTCATCCTGATAGAGAGTAAAGCAAGTTaGAATTCGTCCAAACCACACATCTCGAAGCACATCTTTGTCATC +
Preference number: 5 (lower is better)
Translates to: CFSFSYLILIESKAS*NSSKPHISKHIFVI
Trigger: GATGACAAAGATGTGCTTCGAGATGTGTGGTTTGGACGAATTCCAACTTGCTTTACTCTCTATCAGGATGAGATAACTGAAAGAGAAGCA
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000039286.5
CDS-3UTR CAA 90 bp CTTTTAGCATACTCAGATGGGTTGACATTCAATGTGGACAGCAAGCTAGCTCACCTCACTAACATCTTCTaGTCTCATAACCTTCTGAAA +
Preference number: 5 (lower is better)
Translates to: LLAYSDGLTFNVDSKLAHLTNIF*SHNLLK
Trigger: TTTCAGAAGGTTATGAGACAAGAAGATGTTAGTGAG...GTGAGCTAGCTTGCTGTCCACATTGAATGTCAACCCATCTGAGTATGCTAAAAG
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000039286.5
CDS-3UTR CAA 90 bp AGACAGATTTTTCAAGTCACAGTAATAAATCCTGTGACAGCTCCTGAGACAAGTCAAATAGTAAACCAATaGGATAATGCCATTTCAGGG +
Preference number: 5 (lower is better)
Translates to: RQIFQVTVINPVTAPETSQIVNQ*DNAISG
Trigger: CCCTGAAATGGCATTATCCAATTGGTTTACTATTTG...ACTTGTCTCAGGAGCTGTCACAGGATTTATTACTGTGACTTGAAAAATCTGTCT
38% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000039286.5
CDS CAA 90 bp GGTAGCTCAGATGCTCGCTCAGCCACTGCAGAGGGGTTTCCAGCATaGGCTCTATCCCGTGAATCATCACCTGGCTCCTCTTCTCTCCAT +
Preference number: 6 (lower is better)
Translates to: GSSDARSATAEGFPA*ALSRESSPGSSSLH
Trigger: ATGGAGAGAAGAGGAGCCAGGTGATGATTCACGGGATAGAGCCAATGCTGGAAACCCCTCTGCAGTGGCTGAGCGAGCATCTGAGCTACC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000039286.5
CDS TCA 72 bp CATCTTCAGGGGCGACTGCGGAAGGACAGACTTCTCTaGGGAGATCTCCAAGTGTGTGCAGCTGTCCATCTG +
Preference number: 6 (lower is better)
Translates to: HLQGRLRKDRLL*GDLQVCAAVHL
Trigger: CAGATGGACAGCTGCACACACTTGGAGATCTCCTCAGAGAAGTCTGTCCTTCCGCAGTCGCCCCTGAAGATG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000039286.5
CDS CCA 72 bp GGATATTCCATGAGTTTCCGGTTGATGGCCCAAAACTaGTCAAATCTGTCATTCTGCAGTCCCATCCAGAGC +
Preference number: 6 (lower is better)
Translates to: GYSMSFRLMAQN*SNLSFCSPIQS
Trigger: GCTCTGGATGGGACTGCAGAATGACAGATTTGACCAGTTTTGGGCCATCAACCGGAAACTCATGGAATATCC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000039286.5
CDS TCA 72 bp TTTAAAGCATCAGCTTCTTTCATACACGACATAAAGTaGGCCTCAACCGCATCCTTGGATGGACAGTGTAGA +
Preference number: 6 (lower is better)
Translates to: FKASASFIHDIK*ASTASLDGQCR
Trigger: TCTACACTGTCCATCCAAGGATGCGGTTGAGGCTCACTTTATGTCGTGTATGAAAGAAGCTGATGCTTTAAA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000039286.5
CDS CCA 72 bp TTCAGTTATCTCATCCTGATAGAGAGTAAAGCAAGTTaGAATTCGTCCAAACCACACATCTCGAAGCACATC +
Preference number: 6 (lower is better)
Translates to: FSYLILIESKAS*NSSKPHISKHI
Trigger: GATGTGCTTCGAGATGTGTGGTTTGGACGAATTCCAACTTGCTTTACTCTCTATCAGGATGAGATAACTGAA
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000039286.5
CDS TCA 72 bp GCTTTTTCACTTTGTCAGTTACCAACGTCAAATAGCTaGCTCTTGGCAAAAGCAAATAGTATGGTTCTGCTT +
Preference number: 6 (lower is better)
Translates to: AFSLCQLPTSNS*LLAKANSMVLL
Trigger: AAGCAGAACCATACTATTTGCTTTTGCCAAGAGTCAGCTATTTGACGTTGGTAACTGACAAAGTGAAAAAGC
39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000039286.5