Pregenerated sensors for ATG5 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000038160Ensembl transcript IDs: ENSMUST00000039286.5
Found 58 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR CCA 90 bp | CAGCCCTGCCCGGGCGCCCTATCTCTCATGGAATCTTCTCCTCCTTaGCTTGCAGCAGCCCGGGTTTCTGTTGCCTCCACTGAACTTGAC | + |
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Preference number: 1 (lower is better) Translates to: QPCPGALSLMESSPP*LAAARVSVASTELD Trigger: GTCAAGTTCAGTGGAGGCAACAGAAACCCGGGCTGCTGCAAGCCAAGGAGGAGAAGATTCCATGAGAGATAGGGCGCCCGGGCAGGGCTG 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000039286.5 |
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| 3UTR CCA 90 bp | AAGCAGTGGTGCACACTCAGCCCTGCCCGGGCGCCCTATCTCTCATaGAATCTTCTCCTCCTTGGCTTGCAGCAGCCCGGGTTTCTGTTG | + |
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Preference number: 1 (lower is better) Translates to: KQWCTLSPARAPYLS*NLLLLGLQQPGFLL Trigger: CAACAGAAACCCGGGCTGCTGCAAGCCAAGGAGGAGAAGATTCCATGAGAGATAGGGCGCCCGGGCAGGGCTGAGTGTGCACCACTGCTT 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000039286.5 |
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| 3UTR GCA 90 bp | AGTGGTCCTGTGTGTCTCAGCGAAGCAGTGGTGCACACTCAGCCCTaGCCGGGCGCCCTATCTCTCATGGAATCTTCTCCTCCTTGGCTT | + |
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Preference number: 1 (lower is better) Translates to: SGPVCLSEAVVHTQP*PGALSLMESSPPWL Trigger: AAGCCAAGGAGGAGAAGATTCCATGAGAGATAGGGCGCCCGGGCAGGGCTGAGTGTGCACCACTGCTTCGCTGAGACACACAGGACCACT 59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000039286.5 |
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| 3UTR GCA 90 bp | TCCAGTAACCTCTGGATGTTTTTGGTAATGATAAGGAAAAGCTACTaGAGTCTAGAGACAGGTCACCTGCAGGCTTTAAAGACTGGCTGC | + |
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Preference number: 1 (lower is better) Translates to: SSNLWMFLVMIRKSY*SLETGHLQALKTGC Trigger: GCAGCCAGTCTTTAAAGCCTGCAGGTGACCTGTCTCTAGACTGCAGTAGCTTTTCCTTATCATTACCAAAAACATCCAGAGGTTACTGGA 46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000039286.5 |
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| 3UTR GCA 90 bp | TTAAGTCTAATTCTATTGAAAATTCAACCAATGTTTCCATTCTCCTaGCTAAGGTTCCACCATGGTCACCTTAGGAAATACCCCACTTAT | + |
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Preference number: 1 (lower is better) Translates to: LSLILLKIQPMFPFS*LRFHHGHLRKYPTY Trigger: ATAAGTGGGGTATTTCCTAAGGTGACCATGGTGGAACCTTAGGCAGGAGAATGGAAACATTGGTTGAATTTTCAATAGAATTAGACTTAA 38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000039286.5 |
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| 3UTR CAA 90 bp | CCTGCCCGGGCGCCCTATCTCTCATGGAATCTTCTCCTCCTTGGCTaGCAGCAGCCCGGGTTTCTGTTGCCTCCACTGAACTTGACTGAA | + |
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Preference number: 2 (lower is better) Translates to: PARAPYLSWNLLLLG*QQPGFLLPPLNLTE Trigger: TTCAGTCAAGTTCAGTGGAGGCAACAGAAACCCGGGCTGCTGCAAGCCAAGGAGGAGAAGATTCCATGAGAGATAGGGCGCCCGGGCAGG 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000039286.5 |
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| 3UTR CAA 90 bp | CTCCTTGGCTTGCAGCAGCCCGGGTTTCTGTTGCCTCCACTGAACTaGACTGAAGCAAGGGTGTCACGCCTCGTTGTCCTGACTCAAGGT | + |
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Preference number: 2 (lower is better) Translates to: LLGLQQPGFLLPPLN*TEARVSRLVVLTQG Trigger: ACCTTGAGTCAGGACAACGAGGCGTGACACCCTTGCTTCAGTCAAGTTCAGTGGAGGCAACAGAAACCCGGGCTGCTGCAAGCCAAGGAG 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000039286.5 |
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| 3UTR CAA 90 bp | TCATGGAATCTTCTCCTCCTTGGCTTGCAGCAGCCCGGGTTTCTGTaGCCTCCACTGAACTTGACTGAAGCAAGGGTGTCACGCCTCGTT | + |
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Preference number: 2 (lower is better) Translates to: SWNLLLLGLQQPGFL*PPLNLTEARVSRLV Trigger: AACGAGGCGTGACACCCTTGCTTCAGTCAAGTTCAGTGGAGGCAACAGAAACCCGGGCTGCTGCAAGCCAAGGAGGAGAAGATTCCATGA 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000039286.5 |
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| 3UTR-3UTR TCA 90 bp | AGTCTAGAGACAGGTCACCTGCAGGCTTTAAAGACTGGCTGCCAGGGGCCACAACCCTTGCTATGCCAGTaGGAAATGGGAACACAGAAG | + |
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Preference number: 2 (lower is better) Translates to: SLETGHLQALKTGCQGPQPLLCQ*EMGTQK Trigger: CTTCTGTGTTCCCATTTCTCACTGGCATAGCAAGGG...TTGTGGCCCCTGGCAGCCAGTCTTTAAAGCCTGCAGGTGACCTGTCTCTAGACT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000039286.5 |
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| 3UTR-3UTR TCA 90 bp | AGGAGTCTCCAAGCAGCCATCGAGAGAGTGCAGCAAACTTTCCTTACTGTGGTATCCTGTGACAGCTCCTaGGACAAGTCGCCTTATGCC | + |
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Preference number: 2 (lower is better) Translates to: RSLQAAIERVQQTFLTVVSCDSS*DKSPYA Trigger: GGCATAAGGCGACTTGTCTCAGGAGCTGTCACAGGA...TACCACAGTAAGGAAAGTTTGCTGCACTCTCTCGATGGCTGCTTGGAGACTCCT 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000039286.5 |
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| 3UTR-3UTR GCA 90 bp | CAAATCAACAGCAGGAGTCTCCAAGCAGCCATCGAGAGAGTGCAGCAAACTTTCACGAGAAGAGGAGGCTaGAGTGGTCCTGTGTGTCTC | + |
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Preference number: 2 (lower is better) Translates to: QINSRSLQAAIERVQQTFTRRGG*SGPVCL Trigger: GAGACACACAGGACCACTGCAGCCTCCTCTTCTCGT...GAAAGTTTGCTGCACTCTCTCGATGGCTGCTTGGAGACTCCTGCTGTTGATTTG 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000039286.5 |
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| 3UTR-3UTR TCA 90 bp | CAAATCAACAGCAGGAGTCTCCAAGCAGCCATCGAGAGAGTGCAGCAAACTTTCTCCACTGAACTTGACTaGAGCAAGGGTGTCACGCCT | + |
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Preference number: 2 (lower is better) Translates to: QINSRSLQAAIERVQQTFSTELD*SKGVTP Trigger: AGGCGTGACACCCTTGCTTCAGTCAAGTTCAGTGGA...GAAAGTTTGCTGCACTCTCTCGATGGCTGCTTGGAGACTCCTGCTGTTGATTTG 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000039286.5 |
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| 3UTR-3UTR TCA 90 bp | TCTAGAGACAGGTCACCTGCAGGCTTTAAAGACTGGCTGCCAGGGGCCACAATGTGGCATACTATGATTTaGCAGGTTTACAGTGACCAA | + |
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Preference number: 2 (lower is better) Translates to: SRDRSPAGFKDWLPGATMWHTMI*QVYSDQ Trigger: TTGGTCACTGTAAACCTGTCAAATCATAGTATGCCA...CATTGTGGCCCCTGGCAGCCAGTCTTTAAAGCCTGCAGGTGACCTGTCTCTAGA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000039286.5 |
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| 3UTR-3UTR TCA 90 bp | TCTTTTAGCATACTCAGATGGGTTGACATTCAATGTGGACAGCAAGCTAGCTCACACGCCTCGTTGTCCTaGCTCAAGGTGGTTCCATCT | + |
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Preference number: 2 (lower is better) Translates to: SFSILRWVDIQCGQQASSHASLS*LKVVPS Trigger: AGATGGAACCACCTTGAGTCAGGACAACGAGGCGTG...TGAGCTAGCTTGCTGTCCACATTGAATGTCAACCCATCTGAGTATGCTAAAAGA 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000039286.5 |
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| 3UTR-3UTR GCA 90 bp | CAAATCAACAGCAGGAGTCTCCAAGCAGCCATCGAGAGAGTGCAGCAAACTTTCATAAGGAAAAGCTACTaGAGTCTAGAGACAGGTCAC | + |
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Preference number: 2 (lower is better) Translates to: QINSRSLQAAIERVQQTFIRKSY*SLETGH Trigger: GTGACCTGTCTCTAGACTGCAGTAGCTTTTCCTTAT...GAAAGTTTGCTGCACTCTCTCGATGGCTGCTTGGAGACTCCTGCTGTTGATTTG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000039286.5 |
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| 3UTR-3UTR CCA 90 bp | TTAGCATACTCAGATGGGTTGACATTCAATGTGGACAGCAAGCTAGCTCACAAATGTCCTGACTCAAGGTaGTTCCATCTAGCGAGGAGG | + |
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Preference number: 2 (lower is better) Translates to: LAYSDGLTFNVDSKLAHKCPDSR*FHLARR Trigger: CCTCCTCGCTAGATGGAACCACCTTGAGTCAGGACA...TTTGTGAGCTAGCTTGCTGTCCACATTGAATGTCAACCCATCTGAGTATGCTAA 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000039286.5 |
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| 3UTR CAA 90 bp | AACTTTCCTTACTGTGGTAGGAGTTCCAGTAACCTCTGGATGTTTTaGGTAATGATAAGGAAAAGCTACTGCAGTCTAGAGACAGGTCAC | + |
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Preference number: 2 (lower is better) Translates to: NFPYCGRSSSNLWMF*VMIRKSYCSLETGH Trigger: GTGACCTGTCTCTAGACTGCAGTAGCTTTTCCTTATCATTACCAAAAACATCCAGAGGTTACTGGAACTCCTACCACAGTAAGGAAAGTT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000039286.5 |
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| 3UTR-3UTR TCA 90 bp | TCTTTTAGCATACTCAGATGGGTTGACATTCAATGTGGACAGCAAGCTAGCTCAATACTTGGCATACTATaGTTTGACAGGTTTACAGTG | + |
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Preference number: 2 (lower is better) Translates to: SFSILRWVDIQCGQQASSILGIL*FDRFTV Trigger: CACTGTAAACCTGTCAAATCATAGTATGCCAAGTAT...TGAGCTAGCTTGCTGTCCACATTGAATGTCAACCCATCTGAGTATGCTAAAAGA 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000039286.5 |
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| 3UTR CCA 72 bp | GAGGCTGCAGTGGTCCTGTGTGTCTCAGCGAAGCAGTaGTGCACACTCAGCCCTGCCCGGGCGCCCTATCTC | + |
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Preference number: 3 (lower is better) Translates to: EAAVVLCVSAKQ*CTLSPARAPYL Trigger: GAGATAGGGCGCCCGGGCAGGGCTGAGTGTGCACCACTGCTTCGCTGAGACACACAGGACCACTGCAGCCTC 65% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000039286.5 |
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| 3UTR GCA 72 bp | GCTGCAGTGGTCCTGTGTGTCTCAGCGAAGCAGTGGTaGACACTCAGCCCTGCCCGGGCGCCCTATCTCTCA | + |
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Preference number: 3 (lower is better) Translates to: AAVVLCVSAKQW*TLSPARAPYLS Trigger: TGAGAGATAGGGCGCCCGGGCAGGGCTGAGTGTGCACCACTGCTTCGCTGAGACACACAGGACCACTGCAGC 64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000039286.5 |
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| 3UTR CCA 72 bp | TGCACACTCAGCCCTGCCCGGGCGCCCTATCTCTCATaGAATCTTCTCCTCCTTGGCTTGCAGCAGCCCGGG | + |
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Preference number: 3 (lower is better) Translates to: CTLSPARAPYLS*NLLLLGLQQPG Trigger: CCCGGGCTGCTGCAAGCCAAGGAGGAGAAGATTCCATGAGAGATAGGGCGCCCGGGCAGGGCTGAGTGTGCA 64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000039286.5 |
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| 3UTR CCA 72 bp | CCGGGCGCCCTATCTCTCATGGAATCTTCTCCTCCTTaGCTTGCAGCAGCCCGGGTTTCTGTTGCCTCCACT | + |
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Preference number: 3 (lower is better) Translates to: PGALSLMESSPP*LAAARVSVAST Trigger: AGTGGAGGCAACAGAAACCCGGGCTGCTGCAAGCCAAGGAGGAGAAGATTCCATGAGAGATAGGGCGCCCGG 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000039286.5 |
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| 3UTR-3UTR CAA 90 bp | CAAATCAACAGCAGGAGTCTCCAAGCAGCCATCGAGAGAGTGCAGCAAACTTTCGGAATCTTCTCCTCCTaGGCTTGCAGCAGCCCGGGT | + |
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Preference number: 3 (lower is better) Translates to: QINSRSLQAAIERVQQTFGIFSS*ACSSPG Trigger: ACCCGGGCTGCTGCAAGCCAAGGAGGAGAAGATTCC...GAAAGTTTGCTGCACTCTCTCGATGGCTGCTTGGAGACTCCTGCTGTTGATTTG 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000039286.5 |
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| 3UTR TCA 72 bp | CAAGTCGCCTTATGCCCCGCACCCTTGCTATGCCAGTaGGAAATGGGAACACAGAAGAAAAAGTGGCTTACT | + |
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Preference number: 3 (lower is better) Translates to: QVALCPAPLLCQ*EMGTQKKKWLT Trigger: AGTAAGCCACTTTTTCTTCTGTGTTCCCATTTCTCACTGGCATAGCAAGGGTGCGGGGCATAAGGCGACTTG 50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000039286.5 |
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| 3UTR GCA 72 bp | CTCTGGATGTTTTTGGTAATGATAAGGAAAAGCTACTaGAGTCTAGAGACAGGTCACCTGCAGGCTTTAAAG | + |
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Preference number: 3 (lower is better) Translates to: LWMFLVMIRKSY*SLETGHLQALK Trigger: CTTTAAAGCCTGCAGGTGACCTGTCTCTAGACTGCAGTAGCTTTTCCTTATCATTACCAAAAACATCCAGAG 43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000039286.5 |
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| 3UTR-3UTR CAA 90 bp | TTAGCATACTCAGATGGGTTGACATTCAATGTGGACAGCAAGCTAGCTCACAAAAGATTCAGGAGGTCTTaGAAAAGTGACAAACTGTAT | + |
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Preference number: 3 (lower is better) Translates to: LAYSDGLTFNVDSKLAHKRFRRS*KSDKLY Trigger: ATACAGTTTGTCACTTTTCAAAGACCTCCTGAATCT...TTTGTGAGCTAGCTTGCTGTCCACATTGAATGTCAACCCATCTGAGTATGCTAA 40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000039286.5 |
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| CDS-3UTR GCA 90 bp | GCAGTGGTGCACACTCAGCCCTGCCCGGGCGCCCTATCTCTCATGGAATCTTCTGTGCAGCTGTCCATCTaGGGCCACAGGCCGGAACAG | + |
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Preference number: 4 (lower is better) Translates to: AVVHTQPCPGALSLMESSVQLSI*GHRPEQ Trigger: CTGTTCCGGCCTGTGGCCGCAGATGGACAGCTGCAC...AGAAGATTCCATGAGAGATAGGGCGCCCGGGCAGGGCTGAGTGTGCACCACTGC 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000039286.5 |
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| 3UTR CAA 72 bp | CCCGGGCGCCCTATCTCTCATGGAATCTTCTCCTCCTaGGCTTGCAGCAGCCCGGGTTTCTGTTGCCTCCAC | + |
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Preference number: 4 (lower is better) Translates to: PGRPISHGIFSS*ACSSPGFCCLH Trigger: GTGGAGGCAACAGAAACCCGGGCTGCTGCAAGCCAAGGAGGAGAAGATTCCATGAGAGATAGGGCGCCCGGG 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000039286.5 |
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| 3UTR CAA 72 bp | TTGCAGCAGCCCGGGTTTCTGTTGCCTCCACTGAACTaGACTGAAGCAAGGGTGTCACGCCTCGTTGTCCTG | + |
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Preference number: 4 (lower is better) Translates to: LQQPGFLLPPLN*TEARVSRLVVL Trigger: CAGGACAACGAGGCGTGACACCCTTGCTTCAGTCAAGTTCAGTGGAGGCAACAGAAACCCGGGCTGCTGCAA 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000039286.5 |
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| 3UTR CAA 72 bp | GCGCCCTATCTCTCATGGAATCTTCTCCTCCTTGGCTaGCAGCAGCCCGGGTTTCTGTTGCCTCCACTGAAC | + |
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Preference number: 4 (lower is better) Translates to: APYLSWNLLLLG*QQPGFLLPPLN Trigger: GTTCAGTGGAGGCAACAGAAACCCGGGCTGCTGCAAGCCAAGGAGGAGAAGATTCCATGAGAGATAGGGCGC 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000039286.5 |
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| CDS-3UTR CCA 90 bp | AGCTCACAAATCAACAGCAGGAGTCTCCAAGCAGCCATCGAGAGAGTGCAGCAAGGCCGGAACAGCTTCTaGATGAAAGGCCGCTCCGTC | + |
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Preference number: 4 (lower is better) Translates to: SSQINSRSLQAAIERVQQGRNSF*MKGRSV Trigger: GACGGAGCGGCCTTTCATCCAGAAGCTGTTCCGGCC...TTGCTGCACTCTCTCGATGGCTGCTTGGAGACTCCTGCTGTTGATTTGTGAGCT 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000039286.5 |
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| CDS-3UTR GCA 90 bp | TTGACTGAAGCAAGGGTGTCACGCCTCGTTGTCCTGACTCAAGGTGGTTCCATCTGCTCGCTCAGCCACTaGAGAGGGGTTTCCAGCATT | + |
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Preference number: 4 (lower is better) Translates to: LTEARVSRLVVLTQGGSICSLSH*RGVSSI Trigger: AATGCTGGAAACCCCTCTGCAGTGGCTGAGCGAGCA...GATGGAACCACCTTGAGTCAGGACAACGAGGCGTGACACCCTTGCTTCAGTCAA 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000039286.5 |
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| CDS-3UTR CCA 90 bp | GCCCTATCTCTCATGGAATCTTCTCCTCCTTGGCTTGCAGCAGCCCGGGTTTCTGAGAGTAAAGCAAGTTaGAATTCGTCCAAACCACAC | + |
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Preference number: 4 (lower is better) Translates to: ALSLMESSPPWLAAARVSESKAS*NSSKPH Trigger: GTGTGGTTTGGACGAATTCCAACTTGCTTTACTCTC...AGAAACCCGGGCTGCTGCAAGCCAAGGAGGAGAAGATTCCATGAGAGATAGGGC 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000039286.5 |
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| CDS-3UTR GCA 90 bp | CGAGAGAGTGCAGCAAACTTTCCTTACTGTGGTAGGAGTTCCAGTAACCTCTGGTCAAATCTGTCATTCTaGAGTCCCATCCAGAGCTGC | + |
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Preference number: 4 (lower is better) Translates to: RESAANFPYCGRSSSNLWSNLSF*SPIQSC Trigger: GCAGCTCTGGATGGGACTGCAGAATGACAGATTTGA...CCAGAGGTTACTGGAACTCCTACCACAGTAAGGAAAGTTTGCTGCACTCTCTCG 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000039286.5 |
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| CDS-3UTR GCA 90 bp | GCATACTCAGATGGGTTGACATTCAATGTGGACAGCAAGCTAGCTCACAAATCAAGATCTCCAAGTGTGTaGAGCTGTCCATCTGCGGCC | + |
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Preference number: 4 (lower is better) Translates to: AYSDGLTFNVDSKLAHKSRSPSV*SCPSAA Trigger: GGCCGCAGATGGACAGCTGCACACACTTGGAGATCT...TGATTTGTGAGCTAGCTTGCTGTCCACATTGAATGTCAACCCATCTGAGTATGC 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000039286.5 |
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| CDS-3UTR CCA 90 bp | CAAATCAACAGCAGGAGTCTCCAAGCAGCCATCGAGAGAGTGCAGCAAACTTTCTTGATGGCCCAAAACTaGTCAAATCTGTCATTCTGC | + |
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Preference number: 4 (lower is better) Translates to: QINSRSLQAAIERVQQTFLMAQN*SNLSFC Trigger: GCAGAATGACAGATTTGACCAGTTTTGGGCCATCAA...GAAAGTTTGCTGCACTCTCTCGATGGCTGCTTGGAGACTCCTGCTGTTGATTTG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000039286.5 |
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| CDS-3UTR CCA 90 bp | CAAATCAACAGCAGGAGTCTCCAAGCAGCCATCGAGAGAGTGCAGCAAACTTTCATGAAGAAAGTTATCTaGGTAGCTCAGATGCTCGCT | + |
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Preference number: 4 (lower is better) Translates to: QINSRSLQAAIERVQQTFMKKVI*VAQMLA Trigger: AGCGAGCATCTGAGCTACCCAGATAACTTTCTTCAT...GAAAGTTTGCTGCACTCTCTCGATGGCTGCTTGGAGACTCCTGCTGTTGATTTG 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000039286.5 |
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| CDS-3UTR CCA 90 bp | TGTGGTAGGAGTTCCAGTAACCTCTGGATGTTTTTGGTAATGATAAGGAAAAGCAGGGGTTTCCAGCATTaGCTCTATCCCGTGAATCAT | + |
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Preference number: 4 (lower is better) Translates to: CGRSSSNLWMFLVMIRKSRGFQH*LYPVNH Trigger: ATGATTCACGGGATAGAGCCAATGCTGGAAACCCCT...GCTTTTCCTTATCATTACCAAAAACATCCAGAGGTTACTGGAACTCCTACCACA 43% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000039286.5 |
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| CDS-3UTR TCA 90 bp | ACAGAAGAAAAAGTGGCTTACTCTATGAGATTCAGGAGGTCTTTGAAAAGTGACCCAACGTCAAATAGCTaGCTCTTGGCAAAAGCAAAT | + |
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Preference number: 4 (lower is better) Translates to: TEEKVAYSMRFRRSLKSDPTSNS*LLAKAN Trigger: ATTTGCTTTTGCCAAGAGTCAGCTATTTGACGTTGG...GTCACTTTTCAAAGACCTCCTGAATCTCATAGAGTAAGCCACTTTTTCTTCTGT 40% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000039286.5 |
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| CDS-3UTR GCA 90 bp | ACAGAAGAAAAAGTGGCTTACTCTATGAGATTCAGGAGGTCTTTGAAAAGTGACGCCATTTCAGGGGTGTaGCTTCATATTCAAACCATA | + |
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Preference number: 4 (lower is better) Translates to: TEEKVAYSMRFRRSLKSDAISGV*LHIQTI Trigger: TATGGTTTGAATATGAAGGCACACCCCTGAAATGGC...GTCACTTTTCAAAGACCTCCTGAATCTCATAGAGTAAGCCACTTTTTCTTCTGT 40% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000039286.5 |
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| 3UTR CAA 72 bp | TTCCACCATGGTCACCTTAGGAAATACCCCACTTATTaGTTAATCAGAAATACAAACTGTGGCACATTTCCA | + |
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Preference number: 4 (lower is better) Translates to: FHHGHLRKYPTY*LIRNTNCGTFP Trigger: TGGAAATGTGCCACAGTTTGTATTTCTGATTAACAAATAAGTGGGGTATTTCCTAAGGTGACCATGGTGGAA 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000039286.5 |
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| CDS-3UTR CCA 90 bp | AGACAGATTTTTCAAGTCACAGTAATAAATCCTGTGACAGCTCCTGAGACAAGTCAAAAGCAAATAGTATaGTTCTGCTTCTCTTTCAGT | + |
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Preference number: 4 (lower is better) Translates to: RQIFQVTVINPVTAPETSQKQIV*FCFSFS Trigger: ACTGAAAGAGAAGCAGAACCATACTATTTGCTTTTG...ACTTGTCTCAGGAGCTGTCACAGGATTTATTACTGTGACTTGAAAAATCTGTCT 37% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000039286.5 |
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| CDS TCA 90 bp | TCTTCTCTCCATCTTCAGGGGCGACTGCGGAAGGACAGACTTCTCTaGGGAGATCTCCAAGTGTGTGCAGCTGTCCATCTGCGGCCACAG | + |
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Preference number: 5 (lower is better) Translates to: SSLHLQGRLRKDRLL*GDLQVCAAVHLRPQ Trigger: CTGTGGCCGCAGATGGACAGCTGCACACACTTGGAGATCTCCTCAGAGAAGTCTGTCCTTCCGCAGTCGCCCCTGAAGATGGAGAGAAGA 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000039286.5 |
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| CDS CCA 90 bp | GTAGCTCAGATGCTCGCTCAGCCACTGCAGAGGGGTTTCCAGCATTaGCTCTATCCCGTGAATCATCACCTGGCTCCTCTTCTCTCCATC | + |
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Preference number: 5 (lower is better) Translates to: VAQMLAQPLQRGFQH*LYPVNHHLAPLLSI Trigger: GATGGAGAGAAGAGGAGCCAGGTGATGATTCACGGGATAGAGCCAATGCTGGAAACCCCTCTGCAGTGGCTGAGCGAGCATCTGAGCTAC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000039286.5 |
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| CDS-3UTR CAA 90 bp | TATCTCTCATGGAATCTTCTCCTCCTTGGCTTGCAGCAGCCCGGGTTTCTGTTGTCCATGAGTTTCCGGTaGATGGCCCAAAACTGGTCA | + |
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Preference number: 5 (lower is better) Translates to: YLSWNLLLLGLQQPGFLLSMSFR*MAQNWS Trigger: TGACCAGTTTTGGGCCATCAACCGGAAACTCATGGA...CAACAGAAACCCGGGCTGCTGCAAGCCAAGGAGGAGAAGATTCCATGAGAGATA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000039286.5 |
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| CDS-3UTR CAA 90 bp | TTGACTGAAGCAAGGGTGTCACGCCTCGTTGTCCTGACTCAAGGTGGTTCCATCAAGTGCTTTTTCACTTaGTCAGTTACCAACGTCAAA | + |
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Preference number: 5 (lower is better) Translates to: LTEARVSRLVVLTQGGSIKCFFT*SVTNVK Trigger: TTTGACGTTGGTAACTGACAAAGTGAAAAAGCACTT...GATGGAACCACCTTGAGTCAGGACAACGAGGCGTGACACCCTTGCTTCAGTCAA 47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000039286.5 |
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| CDS-3UTR CAA 90 bp | TCTTTTAGCATACTCAGATGGGTTGACATTCAATGTGGACAGCAAGCTAGCTCAGAGGGGTTTCCAGCATaGGCTCTATCCCGTGAATCA | + |
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Preference number: 5 (lower is better) Translates to: SFSILRWVDIQCGQQASSEGFPA*ALSRES Trigger: TGATTCACGGGATAGAGCCAATGCTGGAAACCCCTC...TGAGCTAGCTTGCTGTCCACATTGAATGTCAACCCATCTGAGTATGCTAAAAGA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000039286.5 |
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| CDS-3UTR CAA 90 bp | AGAAGACAGATTTTTCAAGTCACAGTAATAAATCCTGTGACAGCTCCTGAGACAGCCTCAACCGCATCCTaGGATGGACAGTGTAGAAGG | + |
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Preference number: 5 (lower is better) Translates to: RRQIFQVTVINPVTAPETASTAS*DGQCRR Trigger: CCTTCTACACTGTCCATCCAAGGATGCGGTTGAGGC...TGTCTCAGGAGCTGTCACAGGATTTATTACTGTGACTTGAAAAATCTGTCTTCT 46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000039286.5 |
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| CDS TCA 90 bp | CTTTTATGCTTTAAAGCATCAGCTTCTTTCATACACGACATAAAGTaGGCCTCAACCGCATCCTTGGATGGACAGTGTAGAAGGTCCTTT | + |
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Preference number: 5 (lower is better) Translates to: LLCFKASASFIHDIK*ASTASLDGQCRRSF Trigger: AAAGGACCTTCTACACTGTCCATCCAAGGATGCGGTTGAGGCTCACTTTATGTCGTGTATGAAAGAAGCTGATGCTTTAAAGCATAAAAG 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000039286.5 |
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| CDS CCA 90 bp | TGCTTCTCTTTCAGTTATCTCATCCTGATAGAGAGTAAAGCAAGTTaGAATTCGTCCAAACCACACATCTCGAAGCACATCTTTGTCATC | + |
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Preference number: 5 (lower is better) Translates to: CFSFSYLILIESKAS*NSSKPHISKHIFVI Trigger: GATGACAAAGATGTGCTTCGAGATGTGTGGTTTGGACGAATTCCAACTTGCTTTACTCTCTATCAGGATGAGATAACTGAAAGAGAAGCA 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000039286.5 |
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| CDS-3UTR CAA 90 bp | CTTTTAGCATACTCAGATGGGTTGACATTCAATGTGGACAGCAAGCTAGCTCACCTCACTAACATCTTCTaGTCTCATAACCTTCTGAAA | + |
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Preference number: 5 (lower is better) Translates to: LLAYSDGLTFNVDSKLAHLTNIF*SHNLLK Trigger: TTTCAGAAGGTTATGAGACAAGAAGATGTTAGTGAG...GTGAGCTAGCTTGCTGTCCACATTGAATGTCAACCCATCTGAGTATGCTAAAAG 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000039286.5 |
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| CDS-3UTR CAA 90 bp | AGACAGATTTTTCAAGTCACAGTAATAAATCCTGTGACAGCTCCTGAGACAAGTCAAATAGTAAACCAATaGGATAATGCCATTTCAGGG | + |
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Preference number: 5 (lower is better) Translates to: RQIFQVTVINPVTAPETSQIVNQ*DNAISG Trigger: CCCTGAAATGGCATTATCCAATTGGTTTACTATTTG...ACTTGTCTCAGGAGCTGTCACAGGATTTATTACTGTGACTTGAAAAATCTGTCT 38% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000039286.5 |
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| CDS CAA 90 bp | GGTAGCTCAGATGCTCGCTCAGCCACTGCAGAGGGGTTTCCAGCATaGGCTCTATCCCGTGAATCATCACCTGGCTCCTCTTCTCTCCAT | + |
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Preference number: 6 (lower is better) Translates to: GSSDARSATAEGFPA*ALSRESSPGSSSLH Trigger: ATGGAGAGAAGAGGAGCCAGGTGATGATTCACGGGATAGAGCCAATGCTGGAAACCCCTCTGCAGTGGCTGAGCGAGCATCTGAGCTACC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000039286.5 |
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| CDS TCA 72 bp | CATCTTCAGGGGCGACTGCGGAAGGACAGACTTCTCTaGGGAGATCTCCAAGTGTGTGCAGCTGTCCATCTG | + |
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Preference number: 6 (lower is better) Translates to: HLQGRLRKDRLL*GDLQVCAAVHL Trigger: CAGATGGACAGCTGCACACACTTGGAGATCTCCTCAGAGAAGTCTGTCCTTCCGCAGTCGCCCCTGAAGATG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000039286.5 |
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| CDS CCA 72 bp | GGATATTCCATGAGTTTCCGGTTGATGGCCCAAAACTaGTCAAATCTGTCATTCTGCAGTCCCATCCAGAGC | + |
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Preference number: 6 (lower is better) Translates to: GYSMSFRLMAQN*SNLSFCSPIQS Trigger: GCTCTGGATGGGACTGCAGAATGACAGATTTGACCAGTTTTGGGCCATCAACCGGAAACTCATGGAATATCC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000039286.5 |
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| CDS TCA 72 bp | TTTAAAGCATCAGCTTCTTTCATACACGACATAAAGTaGGCCTCAACCGCATCCTTGGATGGACAGTGTAGA | + |
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Preference number: 6 (lower is better) Translates to: FKASASFIHDIK*ASTASLDGQCR Trigger: TCTACACTGTCCATCCAAGGATGCGGTTGAGGCTCACTTTATGTCGTGTATGAAAGAAGCTGATGCTTTAAA 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000039286.5 |
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| CDS CCA 72 bp | TTCAGTTATCTCATCCTGATAGAGAGTAAAGCAAGTTaGAATTCGTCCAAACCACACATCTCGAAGCACATC | + |
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Preference number: 6 (lower is better) Translates to: FSYLILIESKAS*NSSKPHISKHI Trigger: GATGTGCTTCGAGATGTGTGGTTTGGACGAATTCCAACTTGCTTTACTCTCTATCAGGATGAGATAACTGAA 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000039286.5 |
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| CDS TCA 72 bp | GCTTTTTCACTTTGTCAGTTACCAACGTCAAATAGCTaGCTCTTGGCAAAAGCAAATAGTATGGTTCTGCTT | + |
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Preference number: 6 (lower is better) Translates to: AFSLCQLPTSNS*LLAKANSMVLL Trigger: AAGCAGAACCATACTATTTGCTTTTGCCAAGAGTCAGCTATTTGACGTTGGTAACTGACAAAGTGAAAAAGC 39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000039286.5 |
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