Pregenerated sensors for ATG4C (Mus musculus)
Ensembl gene IDs: ENSMUSG00000028550Ensembl transcript IDs: ENSMUST00000030279.15, ENSMUST00000180278.2
Found 63 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR CAA 90 bp | AGAGGAACGCGCTCCGTTAGAGTCTCCAGCTCACTGTTGCGCTCCTaGACTCTGCTGTGTTCGAGCGCCTCTCAGAAGCACAAATGTCAC | + |
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Preference number: 2 (lower is better) Translates to: RGTRSVRVSSSLLRS*TLLCSSASQKHKCH Trigger: GTGACATTTGTGCTTCTGAGAGGCGCTCGAACACAGCAGAGTCAAGGAGCGCAACAGTGAGCTGGAGACTCTAACGGAGCGCGTTCCTCT 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000030279.15 ENSMUST00000180278.2 |
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| 3UTR-3UTR CCA 90 bp | TCATATACAAGGCCCTGGGTTCAACCCCCAGACCCAGTCCTGACAGGAAGAAGATCAGGGAGAAAATGCTaGGGACCGAAAGGCTTGCAG | + |
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Preference number: 2 (lower is better) Translates to: SYTRPWVQPPDPVLTGRRSGRKC*GPKGLQ Trigger: CTGCAAGCCTTTCGGTCCCCAGCATTTTCTCCCTGA...TCTTCTTCCTGTCAGGACTGGGTCTGGGGGTTGAACCCAGGGCCTTGTATATGA 53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000030279.15 ENSMUST00000180278.2 |
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| 3UTR-3UTR CCA 90 bp | TACCTATCATATACAAGGCCCTGGGTTCAACCCCCAGACCCAGTCCTGACAGGACCATTAGCACATCTTTaGGAAACAGGAATGCAACCA | + |
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Preference number: 2 (lower is better) Translates to: YLSYTRPWVQPPDPVLTGPLAHL*ETGMQP Trigger: TGGTTGCATTCCTGTTTCCCAAAGATGTGCTAATGG...TCCTGTCAGGACTGGGTCTGGGGGTTGAACCCAGGGCCTTGTATATGATAGGTA 49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000030279.15 ENSMUST00000180278.2 |
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| 3UTR-3UTR TCA 90 bp | AATGCAACCAGAATCGCTTGTTATTTATCACTGGAAAGCAAGAGCCATCAAGTCCACTGTTGCGCTCCTTaGCTCTGCTGTGTTCGAGCG | + |
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Preference number: 2 (lower is better) Translates to: NATRIACYLSLESKSHQVHCCAP*LCCVRA Trigger: CGCTCGAACACAGCAGAGTCAAGGAGCGCAACAGTG...GACTTGATGGCTCTTGCTTTCCAGTGATAAATAACAAGCGATTCTGGTTGCATT 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000030279.15 ENSMUST00000180278.2 |
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| 3UTR-3UTR GCA 90 bp | TCATATACAAGGCCCTGGGTTCAACCCCCAGACCCAGTCCTGACAGGAAGAAGATTTGGGAAACAGGAATaGAACCAGAATCGCTTGTTA | + |
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Preference number: 2 (lower is better) Translates to: SYTRPWVQPPDPVLTGRRFGKQE*NQNRLL Trigger: TAACAAGCGATTCTGGTTGCATTCCTGTTTCCCAAA...TCTTCTTCCTGTCAGGACTGGGTCTGGGGGTTGAACCCAGGGCCTTGTATATGA 48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000030279.15 ENSMUST00000180278.2 |
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| 3UTR CAA 90 bp | AAGGAAGGAGGAAGGGAGGGAGGGAGGGGGAGGGAAACAAGTGTTTaGTATTCATTCCTCATAGAAGACTCCGCAAAATGCATAAAGAGT | + |
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Preference number: 2 (lower is better) Translates to: KEGGREGGRGRETSV*YSFLIEDSAKCIKS Trigger: ACTCTTTATGCATTTTGCGGAGTCTTCTATGAGGAATGAATACAAAACACTTGTTTCCCTCCCCCTCCCTCCCTCCCTTCCTCCTTCCTT 47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000030279.15 ENSMUST00000180278.2 |
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| 3UTR-3UTR TCA 90 bp | CTGGTTACATTAAGAGCAGGAGGTTGGGTAGCTCTGAAGATCCAGTCTCCTGTCAGTAACTTGGTGATCTaGCTCTTTGAGGAAACATGT | + |
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Preference number: 2 (lower is better) Translates to: LVTLRAGGWVALKIQSPVSNLVI*LFEETC Trigger: ACATGTTTCCTCAAAGAGTCAGATCACCAAGTTACT...GACAGGAGACTGGATCTTCAGAGCTACCCAACCTCCTGCTCTTAATGTAACCAG 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000030279.15 ENSMUST00000180278.2 |
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| 3UTR-3UTR CCA 90 bp | CAAACCCGAAAGTCCTCTGGTTACATTAAGAGCAGGAGGTTGGGTAGCTCTGAACCATTAGCACATCTTTaGGAAACAGGAATGCAACCA | + |
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Preference number: 2 (lower is better) Translates to: QTRKSSGYIKSRRLGSSEPLAHL*ETGMQP Trigger: TGGTTGCATTCCTGTTTCCCAAAGATGTGCTAATGG...TTCAGAGCTACCCAACCTCCTGCTCTTAATGTAACCAGAGGACTTTCGGGTTTG 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000030279.15 ENSMUST00000180278.2 |
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| 3UTR-3UTR CCA 90 bp | AAGGGAGGGAGGGAGGGGGAGGGAAACAAGTGTTTTGTATTCATTCCTCATAGACTTGTTATTTATCACTaGAAAGCAAGAGCCATCAAG | + |
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Preference number: 2 (lower is better) Translates to: KGGREGEGNKCFVFIPHRLVIYH*KARAIK Trigger: CTTGATGGCTCTTGCTTTCCAGTGATAAATAACAAG...TCTATGAGGAATGAATACAAAACACTTGTTTCCCTCCCCCTCCCTCCCTCCCTT 43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000030279.15 ENSMUST00000180278.2 |
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| 3UTR-3UTR GCA 90 bp | AAGGGAGGGAGGGAGGGGGAGGGAAACAAGTGTTTTGTATTCATTCCTCATAGACATATGGGTAAGTATTaGCTTAAAATCCTGCTTACA | + |
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Preference number: 2 (lower is better) Translates to: KGGREGEGNKCFVFIPHRHMGKY*LKILLT Trigger: TGTAAGCAGGATTTTAAGGCAATACTTACCCATATG...TCTATGAGGAATGAATACAAAACACTTGTTTCCCTCCCCCTCCCTCCCTCCCTT 42% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 2 transcripts: ENSMUST00000030279.15 ENSMUST00000180278.2 |
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| 3UTR-3UTR CAA 90 bp | TGTAGTGTTCCATTAGCACATCTTTGGGAAACAGGAATGCAACCAGAATCGCTTGTCTCCAGCTCACTGTaGCGCTCCTTGACTCTGCTG | + |
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Preference number: 3 (lower is better) Translates to: CSVPLAHLWETGMQPESLVSSSL*RSLTLL Trigger: CAGCAGAGTCAAGGAGCGCAACAGTGAGCTGGAGAC...AAGCGATTCTGGTTGCATTCCTGTTTCCCAAAGATGTGCTAATGGAACACTACA 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000030279.15 ENSMUST00000180278.2 |
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| 3UTR-3UTR CAA 90 bp | TCATATACAAGGCCCTGGGTTCAACCCCCAGACCCAGTCCTGACAGGAAGAAGATGCAACCAGAATCGCTaGTTATTTATCACTGGAAAG | + |
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Preference number: 3 (lower is better) Translates to: SYTRPWVQPPDPVLTGRRCNQNR*LFITGK Trigger: CTTTCCAGTGATAAATAACAAGCGATTCTGGTTGCA...TCTTCTTCCTGTCAGGACTGGGTCTGGGGGTTGAACCCAGGGCCTTGTATATGA 48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000030279.15 ENSMUST00000180278.2 |
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| 3UTR-3UTR CAA 90 bp | AAGGGAGGGAGGGAGGGGGAGGGAAACAAGTGTTTTGTATTCATTCCTCATAGATCCATTAGCACATCTTaGGGAAACAGGAATGCAACC | + |
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Preference number: 3 (lower is better) Translates to: KGGREGEGNKCFVFIPHRSISTS*GNRNAT Trigger: GGTTGCATTCCTGTTTCCCAAAGATGTGCTAATGGA...TCTATGAGGAATGAATACAAAACACTTGTTTCCCTCCCCCTCCCTCCCTCCCTT 47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000030279.15 ENSMUST00000180278.2 |
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| 3UTR-3UTR CAA 90 bp | ACATGTATCATAAAGCCTTCAGGGGACCAATGGGCTCAGGGAGAAAATGCTGGGTGCAACCAGAATCGCTaGTTATTTATCACTGGAAAG | + |
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Preference number: 3 (lower is better) Translates to: TCIIKPSGDQWAQGENAGCNQNR*LFITGK Trigger: CTTTCCAGTGATAAATAACAAGCGATTCTGGTTGCA...CCCAGCATTTTCTCCCTGAGCCCATTGGTCCCCTGAAGGCTTTATGATACATGT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000030279.15 ENSMUST00000180278.2 |
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| 3UTR TCA 72 bp | ATACAAAGGGAGGCTTTTAAAAGTAACTTGGTGATCTaGCTCTTTGAGGAAACATGTATCATAAAGCCTTCA | + |
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Preference number: 3 (lower is better) Translates to: IQREAFKSNLVI*LFEETCIIKPS Trigger: TGAAGGCTTTATGATACATGTTTCCTCAAAGAGTCAGATCACCAAGTTACTTTTAAAAGCCTCCCTTTGTAT 36% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000030279.15 ENSMUST00000180278.2 |
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| 3UTR GCA 72 bp | CTCATAGAAGACTCCGCAAAATGCATAAAGAGTAGCTaGTATAAAATCATATGGGTAAGTATTGCCTTAAAA | + |
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Preference number: 3 (lower is better) Translates to: LIEDSAKCIKSS*YKIIWVSIALK Trigger: TTTTAAGGCAATACTTACCCATATGATTTTATAGCAGCTACTCTTTATGCATTTTGCGGAGTCTTCTATGAG 35% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000030279.15 ENSMUST00000180278.2 |
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| CDS-3UTR TCA 90 bp | TCATATACAAGGCCCTGGGTTCAACCCCCAGACCCAGTCCTGACAGGAAGAAGATGGAGTATGAGTCCCTaGGCCAGCAGCATCTGGCCG | + |
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Preference number: 4 (lower is better) Translates to: SYTRPWVQPPDPVLTGRRWSMSP*ASSIWP Trigger: CGGCCAGATGCTGCTGGCTCAGGGACTCATACTCCA...TCTTCTTCCTGTCAGGACTGGGTCTGGGGGTTGAACCCAGGGCCTTGTATATGA 57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000030279.15 ENSMUST00000180278.2 |
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| CDS-3UTR TCA 90 bp | TACCTATCATATACAAGGCCCTGGGTTCAACCCCCAGACCCAGTCCTGACAGGATGGAGTATGAGTCCCTaGGCCAGCAGCATCTGGCCG | + |
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Preference number: 4 (lower is better) Translates to: YLSYTRPWVQPPDPVLTGWSMSP*ASSIWP Trigger: CGGCCAGATGCTGCTGGCTCAGGGACTCATACTCCA...TCCTGTCAGGACTGGGTCTGGGGGTTGAACCCAGGGCCTTGTATATGATAGGTA 57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000030279.15 ENSMUST00000180278.2 |
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| CDS-3UTR CCA 90 bp | CAAACCCGAAAGTCCTCTGGTTACATTAAGAGCAGGAGGTTGGGTAGCTCTGAAGTGAGCAACCACCGCTaGTCCATACCAATCGCCAGC | + |
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Preference number: 4 (lower is better) Translates to: QTRKSSGYIKSRRLGSSEVSNHR*SIPIAS Trigger: GCTGGCGATTGGTATGGACCAGCGGTGGTTGCTCAC...TTCAGAGCTACCCAACCTCCTGCTCTTAATGTAACCAGAGGACTTTCGGGTTTG 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000030279.15 ENSMUST00000180278.2 |
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| CDS-3UTR CCA 90 bp | TCACTGTTGCGCTCCTTGACTCTGCTGTGTTCGAGCGCCTCTCAGAAGCACAAACCAGATAGTCGGTATTaGTCCTTTCTCCACCGAGTC | + |
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Preference number: 4 (lower is better) Translates to: SLLRSLTLLCSSASQKHKPDSRY*SFLHRV Trigger: GACTCGGTGGAGAAAGGACCAATACCGACTATCTGG...TTTGTGCTTCTGAGAGGCGCTCGAACACAGCAGAGTCAAGGAGCGCAACAGTGA 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000030279.15 ENSMUST00000180278.2 |
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| CDS-3UTR TCA 90 bp | TACCTATCATATACAAGGCCCTGGGTTCAACCCCCAGACCCAGTCCTGACAGGAGCTTTTCTTAAAATGTaGGCAACCACCGCTGGTCCA | + |
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Preference number: 4 (lower is better) Translates to: YLSYTRPWVQPPDPVLTGAFLKM*ATTAGP Trigger: TGGACCAGCGGTGGTTGCTCACATTTTAAGAAAAGC...TCCTGTCAGGACTGGGTCTGGGGGTTGAACCCAGGGCCTTGTATATGATAGGTA 51% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 2 transcripts: ENSMUST00000030279.15 ENSMUST00000180278.2 |
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| CDS-3UTR CCA 90 bp | CTCACTGTTGCGCTCCTTGACTCTGCTGTGTTCGAGCGCCTCTCAGAAGCACAACTTCAGAGAAACTGCTaGAGTTCTGAGTTCTCTGTC | + |
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Preference number: 4 (lower is better) Translates to: LTVALLDSAVFERLSEAQLQRNC*SSEFSV Trigger: GACAGAGAACTCAGAACTCCAGCAGTTTCTCTGAAG...TTGTGCTTCTGAGAGGCGCTCGAACACAGCAGAGTCAAGGAGCGCAACAGTGAG 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000030279.15 ENSMUST00000180278.2 |
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| CDS-3UTR TCA 90 bp | TCACTGTTGCGCTCCTTGACTCTGCTGTGTTCGAGCGCCTCTCAGAAGCACAAATTCAATGGCACATCCTaGTCTTGCAGGCAACATCTT | + |
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Preference number: 4 (lower is better) Translates to: SLLRSLTLLCSSASQKHKFNGTS*SCRQHL Trigger: AAGATGTTGCCTGCAAGATCAGGATGTGCCATTGAA...TTTGTGCTTCTGAGAGGCGCTCGAACACAGCAGAGTCAAGGAGCGCAACAGTGA 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000030279.15 ENSMUST00000180278.2 |
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| CDS-3UTR TCA 90 bp | CTGGTTACATTAAGAGCAGGAGGTTGGGTAGCTCTGAAGATCCAGTCTCCTGTCAAACTGCTGGAGTTCTaGGTTCTCTGTCCCCCGAAA | + |
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Preference number: 4 (lower is better) Translates to: LVTLRAGGWVALKIQSPVKLLEF*VLCPPK Trigger: TTTCGGGGGACAGAGAACTCAGAACTCCAGCAGTTT...GACAGGAGACTGGATCTTCAGAGCTACCCAACCTCCTGCTCTTAATGTAACCAG 50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000030279.15 ENSMUST00000180278.2 |
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| CDS-3UTR TCA 90 bp | TTGCGCTCCTTGACTCTGCTGTGTTCGAGCGCCTCTCAGAAGCACAAATGTCACCTCCAAACCAAGAGATaGTCTTCCTGTGATAAGCCT | + |
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Preference number: 4 (lower is better) Translates to: LRSLTLLCSSASQKHKCHLQTKR*SSCDKP Trigger: AGGCTTATCACAGGAAGATCATCTCTTGGTTTGGAG...GTGACATTTGTGCTTCTGAGAGGCGCTCGAACACAGCAGAGTCAAGGAGCGCAA 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000030279.15 ENSMUST00000180278.2 |
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| CDS-3UTR GCA 90 bp | AACACATACCTATCATATACAAGGCCCTGGGTTCAACCCCCAGACCCAGTCCTGCCTTGCAAATCCGGATaGCTTGCTTCTTCAACTGCT | + |
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Preference number: 4 (lower is better) Translates to: NTYLSYTRPWVQPPDPVLPCKSG*LASSTA Trigger: AGCAGTTGAAGAAGCAAGGCATCCGGATTTGCAAGG...CAGGACTGGGTCTGGGGGTTGAACCCAGGGCCTTGTATATGATAGGTATGTGTT 50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000030279.15 ENSMUST00000180278.2 |
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| CDS-3UTR TCA 90 bp | ACATGTATCATAAAGCCTTCAGGGGACCAATGGGCTCAGGGAGAAAATGCTGGGGCTTTTCTTAAAATGTaGGCAACCACCGCTGGTCCA | + |
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Preference number: 4 (lower is better) Translates to: TCIIKPSGDQWAQGENAGAFLKM*ATTAGP Trigger: TGGACCAGCGGTGGTTGCTCACATTTTAAGAAAAGC...CCCAGCATTTTCTCCCTGAGCCCATTGGTCCCCTGAAGGCTTTATGATACATGT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 20 nt. Matches the following 2 transcripts: ENSMUST00000030279.15 ENSMUST00000180278.2 |
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| CDS-3UTR CCA 90 bp | AGTCCTCTGGTTACATTAAGAGCAGGAGGTTGGGTAGCTCTGAAGATCCAGTCTCCAGATAGTCGGTATTaGTCCTTTCTCCACCGAGTC | + |
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Preference number: 4 (lower is better) Translates to: SPLVTLRAGGWVALKIQSPDSRY*SFLHRV Trigger: GACTCGGTGGAGAAAGGACCAATACCGACTATCTGG...AGACTGGATCTTCAGAGCTACCCAACCTCCTGCTCTTAATGTAACCAGAGGACT 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000030279.15 ENSMUST00000180278.2 |
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| CDS-3UTR CCA 90 bp | TCACTGTTGCGCTCCTTGACTCTGCTGTGTTCGAGCGCCTCTCAGAAGCACAAACATCTTTTTAGGAGATaGACAGTGGAATGTCTCGAG | + |
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Preference number: 4 (lower is better) Translates to: SLLRSLTLLCSSASQKHKHLFRR*TVECLE Trigger: CTCGAGACATTCCACTGTCCATCTCCTAAAAAGATG...TTTGTGCTTCTGAGAGGCGCTCGAACACAGCAGAGTCAAGGAGCGCAACAGTGA 49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000030279.15 ENSMUST00000180278.2 |
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| CDS-3UTR TCA 90 bp | TCACTGTTGCGCTCCTTGACTCTGCTGTGTTCGAGCGCCTCTCAGAAGCACAAACTTCCTTTCATCTTCTaGGAAAAGGTCTTCTTCACT | + |
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Preference number: 4 (lower is better) Translates to: SLLRSLTLLCSSASQKHKLPFIF*EKVFFT Trigger: AGTGAAGAAGACCTTTTCTCAGAAGATGAAAGGAAG...TTTGTGCTTCTGAGAGGCGCTCGAACACAGCAGAGTCAAGGAGCGCAACAGTGA 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000030279.15 ENSMUST00000180278.2 |
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| CDS-3UTR GCA 90 bp | AAGGGAGGGAGGGAGGGGGAGGGAAACAAGTGTTTTGTATTCATTCCTCATAGACCTTGCAAATCCGGATaGCTTGCTTCTTCAACTGCT | + |
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Preference number: 4 (lower is better) Translates to: KGGREGEGNKCFVFIPHRPCKSG*LASSTA Trigger: AGCAGTTGAAGAAGCAAGGCATCCGGATTTGCAAGG...TCTATGAGGAATGAATACAAAACACTTGTTTCCCTCCCCCTCCCTCCCTCCCTT 48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000030279.15 ENSMUST00000180278.2 |
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| CDS-3UTR CCA 90 bp | TCACTGTTGCGCTCCTTGACTCTGCTGTGTTCGAGCGCCTCTCAGAAGCACAAATTACATGATCTTCAATaGCACATCCTGATCTTGCAG | + |
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Preference number: 4 (lower is better) Translates to: SLLRSLTLLCSSASQKHKLHDLQ*HILILQ Trigger: CTGCAAGATCAGGATGTGCCATTGAAGATCATGTAA...TTTGTGCTTCTGAGAGGCGCTCGAACACAGCAGAGTCAAGGAGCGCAACAGTGA 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000030279.15 ENSMUST00000180278.2 |
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| CDS-3UTR TCA 90 bp | AGTCCTCTGGTTACATTAAGAGCAGGAGGTTGGGTAGCTCTGAAGATCCAGTCTTTCAATGGCACATCCTaGTCTTGCAGGCAACATCTT | + |
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Preference number: 4 (lower is better) Translates to: SPLVTLRAGGWVALKIQSFNGTS*SCRQHL Trigger: AAGATGTTGCCTGCAAGATCAGGATGTGCCATTGAA...AGACTGGATCTTCAGAGCTACCCAACCTCCTGCTCTTAATGTAACCAGAGGACT 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000030279.15 ENSMUST00000180278.2 |
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| CDS-3UTR GCA 90 bp | CTGGTTACATTAAGAGCAGGAGGTTGGGTAGCTCTGAAGATCCAGTCTCCTGTCCAAATCCGGATGCCTTaGTTCTTCAACTGCTTTTCT | + |
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Preference number: 4 (lower is better) Translates to: LVTLRAGGWVALKIQSPVQIRMP*FFNCFS Trigger: AGAAAAGCAGTTGAAGAAGCAAGGCATCCGGATTTG...GACAGGAGACTGGATCTTCAGAGCTACCCAACCTCCTGCTCTTAATGTAACCAG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000030279.15 ENSMUST00000180278.2 |
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| CDS-3UTR CCA 90 bp | CAAACCCGAAAGTCCTCTGGTTACATTAAGAGCAGGAGGTTGGGTAGCTCTGAACTTCAGAGAAACTGCTaGAGTTCTGAGTTCTCTGTC | + |
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Preference number: 4 (lower is better) Translates to: QTRKSSGYIKSRRLGSSELQRNC*SSEFSV Trigger: GACAGAGAACTCAGAACTCCAGCAGTTTCTCTGAAG...TTCAGAGCTACCCAACCTCCTGCTCTTAATGTAACCAGAGGACTTTCGGGTTTG 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000030279.15 ENSMUST00000180278.2 |
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| CDS-3UTR TCA 90 bp | AGCACATCTTTGGGAAACAGGAATGCAACCAGAATCGCTTGTTATTTATCACTGCGAGAAAATGGAGTATaGGTCCCTGAGCCAGCAGCA | + |
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Preference number: 4 (lower is better) Translates to: STSLGNRNATRIACYLSLRENGV*VPEPAA Trigger: TGCTGCTGGCTCAGGGACTCATACTCCATTTTCTCG...CAGTGATAAATAACAAGCGATTCTGGTTGCATTCCTGTTTCCCAAAGATGTGCT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000030279.15 ENSMUST00000180278.2 |
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| CDS-3UTR GCA 90 bp | AAGGGAGGGAGGGAGGGGGAGGGAAACAAGTGTTTTGTATTCATTCCTCATAGACAAATCCGGATGCCTTaGTTCTTCAACTGCTTTTCT | + |
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Preference number: 4 (lower is better) Translates to: KGGREGEGNKCFVFIPHRQIRMP*FFNCFS Trigger: AGAAAAGCAGTTGAAGAAGCAAGGCATCCGGATTTG...TCTATGAGGAATGAATACAAAACACTTGTTTCCCTCCCCCTCCCTCCCTCCCTT 46% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 2 transcripts: ENSMUST00000030279.15 ENSMUST00000180278.2 |
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| CDS-3UTR GCA 90 bp | CTGGTTACATTAAGAGCAGGAGGTTGGGTAGCTCTGAAGATCCAGTCTCCTGTCGTCTTCTTCACTGGCTaGGGTAGATGTAAAATCAAA | + |
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Preference number: 4 (lower is better) Translates to: LVTLRAGGWVALKIQSPVVFFTG*GRCKIK Trigger: TTTGATTTTACATCTACCGCAGCCAGTGAAGAAGAC...GACAGGAGACTGGATCTTCAGAGCTACCCAACCTCCTGCTCTTAATGTAACCAG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000030279.15 ENSMUST00000180278.2 |
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| CDS-3UTR TCA 90 bp | AATGCAACCAGAATCGCTTGTTATTTATCACTGGAAAGCAAGAGCCATCAAGTCAAACTGCTGGAGTTCTaGGTTCTCTGTCCCCCGAAA | + |
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Preference number: 4 (lower is better) Translates to: NATRIACYLSLESKSHQVKLLEF*VLCPPK Trigger: TTTCGGGGGACAGAGAACTCAGAACTCCAGCAGTTT...GACTTGATGGCTCTTGCTTTCCAGTGATAAATAACAAGCGATTCTGGTTGCATT 44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000030279.15 ENSMUST00000180278.2 |
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| CDS-3UTR CCA 90 bp | AGTCCTCTGGTTACATTAAGAGCAGGAGGTTGGGTAGCTCTGAAGATCCAGTCTTTACATGATCTTCAATaGCACATCCTGATCTTGCAG | + |
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Preference number: 4 (lower is better) Translates to: SPLVTLRAGGWVALKIQSLHDLQ*HILILQ Trigger: CTGCAAGATCAGGATGTGCCATTGAAGATCATGTAA...AGACTGGATCTTCAGAGCTACCCAACCTCCTGCTCTTAATGTAACCAGAGGACT 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000030279.15 ENSMUST00000180278.2 |
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| CDS-3UTR TCA 90 bp | TGTAGTGTTCCATTAGCACATCTTTGGGAAACAGGAATGCAACCAGAATCGCTTTCCAGCAAAGTAATATaGCTGTTTAGGTTTGCCGCC | + |
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Preference number: 4 (lower is better) Translates to: CSVPLAHLWETGMQPESLSSKVI*LFRFAA Trigger: GGCGGCAAACCTAAACAGTCATATTACTTTGCTGGA...AAGCGATTCTGGTTGCATTCCTGTTTCCCAAAGATGTGCTAATGGAACACTACA 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000030279.15 ENSMUST00000180278.2 |
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| 3UTR CAA 72 bp | CACATCTTTGGGAAACAGGAATGCAACCAGAATCGCTaGTTATTTATCACTGGAAAGCAAGAGCCATCAAGT | + |
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Preference number: 4 (lower is better) Translates to: HIFGKQECNQNR*LFITGKQEPSS Trigger: ACTTGATGGCTCTTGCTTTCCAGTGATAAATAACAAGCGATTCTGGTTGCATTCCTGTTTCCCAAAGATGTG 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000030279.15 ENSMUST00000180278.2 |
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| CDS-3UTR TCA 90 bp | TTAGCACATCTTTGGGAAACAGGAATGCAACCAGAATCGCTTGTTATTTATCACTCCAGCAAAGTAATATaGCTGTTTAGGTTTGCCGCC | + |
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Preference number: 4 (lower is better) Translates to: LAHLWETGMQPESLVIYHSSKVI*LFRFAA Trigger: GGCGGCAAACCTAAACAGTCATATTACTTTGCTGGA...GTGATAAATAACAAGCGATTCTGGTTGCATTCCTGTTTCCCAAAGATGTGCTAA 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000030279.15 ENSMUST00000180278.2 |
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| CDS TCA 90 bp | TCAGGCCAGGTCCAAGCTCTACCGAGAAAATGGAGTATGAGTCCCTaGGCCAGCAGCATCTGGCCGGTCCGCAGCGTGCAGCCCCAGCCA | + |
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Preference number: 5 (lower is better) Translates to: SGQVQALPRKWSMSP*ASSIWPVRSVQPQP Trigger: TGGCTGGGGCTGCACGCTGCGGACCGGCCAGATGCTGCTGGCTCAGGGACTCATACTCCATTTTCTCGGTAGAGCTTGGACCTGGCCTGA 62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000030279.15 ENSMUST00000180278.2 |
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| CDS TCA 90 bp | GCAGCGCATCAGGCCAGGTCCAAGCTCTACCGAGAAAATGGAGTATaGGTCCCTGAGCCAGCAGCATCTGGCCGGTCCGCAGCGTGCAGC | + |
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Preference number: 5 (lower is better) Translates to: AAHQARSKLYRENGV*VPEPAASGRSAACS Trigger: GCTGCACGCTGCGGACCGGCCAGATGCTGCTGGCTCAGGGACTCATACTCCATTTTCTCGGTAGAGCTTGGACCTGGCCTGATGCGCTGC 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000030279.15 ENSMUST00000180278.2 |
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| CDS TCA 90 bp | GCCGGTCCGCAGCGTGCAGCCCCAGCCACAGTCTGTCGTCAAGGCTaGAGCTTCGATTTGAGGAAATTCTTCCCTGTAGGTCAGCCATAT | + |
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Preference number: 5 (lower is better) Translates to: AGPQRAAPATVCRQG*SFDLRKFFPVGQPY Trigger: ATATGGCTGACCTACAGGGAAGAATTTCCTCAAATCGAAGCTTCAGCCTTGACGACAGACTGTGGCTGGGGCTGCACGCTGCGGACCGGC 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000030279.15 ENSMUST00000180278.2 |
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| CDS GCA 90 bp | TTGACAGTGTTGGAAGTCCATGAGTCAGAGTCTGCGTTCTCAATGTaGAGCGCATCAGGCCAGGTCCAAGCTCTACCGAGAAAATGGAGT | + |
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Preference number: 5 (lower is better) Translates to: LTVLEVHESESAFSM*SASGQVQALPRKWS Trigger: ACTCCATTTTCTCGGTAGAGCTTGGACCTGGCCTGATGCGCTGCACATTGAGAACGCAGACTCTGACTCATGGACTTCCAACACTGTCAA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000030279.15 ENSMUST00000180278.2 |
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| CDS-3UTR CAA 90 bp | AACACATACCTATCATATACAAGGCCCTGGGTTCAACCCCCAGACCCAGTCCTGTGGCACATCCTGATCTaGCAGGCAACATCTTGCTTT | + |
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Preference number: 5 (lower is better) Translates to: NTYLSYTRPWVQPPDPVLWHILI*QATSCF Trigger: AAAGCAAGATGTTGCCTGCAAGATCAGGATGTGCCA...CAGGACTGGGTCTGGGGGTTGAACCCAGGGCCTTGTATATGATAGGTATGTGTT 50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000030279.15 ENSMUST00000180278.2 |
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| CDS GCA 90 bp | TCCAAACCAAGAGATGATCTTCCTGTGATAAGCCTCATTCCGCACTaGGTGGTCATCGGGACACTTCCCAGATGTTTCCTTCAGAGAAAC | + |
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Preference number: 5 (lower is better) Translates to: SKPRDDLPVISLIPH*VVIGTLPRCFLQRN Trigger: GTTTCTCTGAAGGAAACATCTGGGAAGTGTCCCGATGACCACGCAGTGCGGAATGAGGCTTATCACAGGAAGATCATCTCTTGGTTTGGA 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000030279.15 ENSMUST00000180278.2 |
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| CDS-3UTR CAA 90 bp | ACATGTATCATAAAGCCTTCAGGGGACCAATGGGCTCAGGGAGAAAATGCTGGGGCAAATCCGGATGCCTaGCTTCTTCAACTGCTTTTC | + |
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Preference number: 5 (lower is better) Translates to: TCIIKPSGDQWAQGENAGANPDA*LLQLLF Trigger: GAAAAGCAGTTGAAGAAGCAAGGCATCCGGATTTGC...CCCAGCATTTTCTCCCTGAGCCCATTGGTCCCCTGAAGGCTTTATGATACATGT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt. Matches the following 2 transcripts: ENSMUST00000030279.15 ENSMUST00000180278.2 |
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| CDS-3UTR CAA 90 bp | TACCTATCATATACAAGGCCCTGGGTTCAACCCCCAGACCCAGTCCTGACAGGATATGACTGTTTAGGTTaGCCGCCAATGATACCTACA | + |
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Preference number: 5 (lower is better) Translates to: YLSYTRPWVQPPDPVLTGYDCLG*PPMIPT Trigger: TGTAGGTATCATTGGCGGCAAACCTAAACAGTCATA...TCCTGTCAGGACTGGGTCTGGGGGTTGAACCCAGGGCCTTGTATATGATAGGTA 49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000030279.15 ENSMUST00000180278.2 |
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| CDS-3UTR CAA 90 bp | AGTCCTCTGGTTACATTAAGAGCAGGAGGTTGGGTAGCTCTGAAGATCCAGTCTTATGACTGTTTAGGTTaGCCGCCAATGATACCTACA | + |
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Preference number: 5 (lower is better) Translates to: SPLVTLRAGGWVALKIQSYDCLG*PPMIPT Trigger: TGTAGGTATCATTGGCGGCAAACCTAAACAGTCATA...AGACTGGATCTTCAGAGCTACCCAACCTCCTGCTCTTAATGTAACCAGAGGACT 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000030279.15 ENSMUST00000180278.2 |
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| CDS-3UTR CAA 90 bp | TGTAGTGTTCCATTAGCACATCTTTGGGAAACAGGAATGCAACCAGAATCGCTTTGGCACATCCTGATCTaGCAGGCAACATCTTGCTTT | + |
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Preference number: 5 (lower is better) Translates to: CSVPLAHLWETGMQPESLWHILI*QATSCF Trigger: AAAGCAAGATGTTGCCTGCAAGATCAGGATGTGCCA...AAGCGATTCTGGTTGCATTCCTGTTTCCCAAAGATGTGCTAATGGAACACTACA 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000030279.15 ENSMUST00000180278.2 |
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| CDS CCA 90 bp | CCTTACGGAACTCTTCCACATTCCCTGCAATTACATGATCTTCAATaGCACATCCTGATCTTGCAGGCAACATCTTGCTTTCATCTTCAT | + |
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Preference number: 5 (lower is better) Translates to: PYGTLPHSLQLHDLQ*HILILQATSCFHLH Trigger: ATGAAGATGAAAGCAAGATGTTGCCTGCAAGATCAGGATGTGCCATTGAAGATCATGTAATTGCAGGGAATGTGGAAGAGTTCCGTAAGG 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000030279.15 ENSMUST00000180278.2 |
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| CDS TCA 90 bp | GAAATGAAATCCTTACGGAACTCTTCCACATTCCCTGCAATTACATaGTCTTCAATGGCACATCCTGATCTTGCAGGCAACATCTTGCTT | + |
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Preference number: 5 (lower is better) Translates to: EMKSLRNSSTFPAIT*SSMAHPDLAGNILL Trigger: AAGCAAGATGTTGCCTGCAAGATCAGGATGTGCCATTGAAGATCATGTAATTGCAGGGAATGTGGAAGAGTTCCGTAAGGATTTCATTTC 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000030279.15 ENSMUST00000180278.2 |
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| CDS-3UTR CAA 90 bp | AGCACATCTTTGGGAAACAGGAATGCAACCAGAATCGCTTGTTATTTATCACTGCTTGCAGGCAACATCTaGCTTTCATCTTCATATTTA | + |
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Preference number: 5 (lower is better) Translates to: STSLGNRNATRIACYLSLLAGNI*LSSSYL Trigger: TAAATATGAAGATGAAAGCAAGATGTTGCCTGCAAG...CAGTGATAAATAACAAGCGATTCTGGTTGCATTCCTGTTTCCCAAAGATGTGCT 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000030279.15 ENSMUST00000180278.2 |
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| CDS-3UTR CAA 90 bp | TTAGCACATCTTTGGGAAACAGGAATGCAACCAGAATCGCTTGTTATTTATCACCTTGCAGGCAACATCTaGCTTTCATCTTCATATTTA | + |
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Preference number: 5 (lower is better) Translates to: LAHLWETGMQPESLVIYHLAGNI*LSSSYL Trigger: TAAATATGAAGATGAAAGCAAGATGTTGCCTGCAAG...GTGATAAATAACAAGCGATTCTGGTTGCATTCCTGTTTCCCAAAGATGTGCTAA 38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000030279.15 ENSMUST00000180278.2 |
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| CDS TCA 72 bp | GTCCAAGCTCTACCGAGAAAATGGAGTATGAGTCCCTaGGCCAGCAGCATCTGGCCGGTCCGCAGCGTGCAG | + |
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Preference number: 6 (lower is better) Translates to: VQALPRKWSMSP*ASSIWPVRSVQ Trigger: CTGCACGCTGCGGACCGGCCAGATGCTGCTGGCTCAGGGACTCATACTCCATTTTCTCGGTAGAGCTTGGAC 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000030279.15 ENSMUST00000180278.2 |
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| CDS TCA 72 bp | CAGGCCAGGTCCAAGCTCTACCGAGAAAATGGAGTATaGGTCCCTGAGCCAGCAGCATCTGGCCGGTCCGCA | + |
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Preference number: 6 (lower is better) Translates to: QARSKLYRENGV*VPEPAASGRSA Trigger: TGCGGACCGGCCAGATGCTGCTGGCTCAGGGACTCATACTCCATTTTCTCGGTAGAGCTTGGACCTGGCCTG 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000030279.15 ENSMUST00000180278.2 |
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| CDS TCA 72 bp | CAGCGTGCAGCCCCAGCCACAGTCTGTCGTCAAGGCTaGAGCTTCGATTTGAGGAAATTCTTCCCTGTAGGT | + |
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Preference number: 6 (lower is better) Translates to: QRAAPATVCRQG*SFDLRKFFPVG Trigger: ACCTACAGGGAAGAATTTCCTCAAATCGAAGCTTCAGCCTTGACGACAGACTGTGGCTGGGGCTGCACGCTG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000030279.15 ENSMUST00000180278.2 |
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| CDS CAA 90 bp | CCCGAAAGTGAAGCTTCAAACGATGCAGTAAACTTTTTGACAGTGTaGGAAGTCCATGAGTCAGAGTCTGCGTTCTCAATGTGCAGCGCA | + |
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Preference number: 6 (lower is better) Translates to: PESEASNDAVNFLTV*EVHESESAFSMCSA Trigger: TGCGCTGCACATTGAGAACGCAGACTCTGACTCATGGACTTCCAACACTGTCAAAAAGTTTACTGCATCGTTTGAAGCTTCACTTTCGGG 47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000030279.15 ENSMUST00000180278.2 |
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| CDS TCA 72 bp | AACTGCTGGAGTTCTGAGTTCTCTGTCCCCCGAAAGTaGAGCTTCAAACGATGCAGTAAACTTTTTGACAGT | + |
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Preference number: 6 (lower is better) Translates to: NCWSSEFSVPRK*SFKRCSKLFDS Trigger: ACTGTCAAAAAGTTTACTGCATCGTTTGAAGCTTCACTTTCGGGGGACAGAGAACTCAGAACTCCAGCAGTT 44% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 2 transcripts: ENSMUST00000030279.15 ENSMUST00000180278.2 |
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| CDS CAA 72 bp | GAAGCTTCAAACGATGCAGTAAACTTTTTGACAGTGTaGGAAGTCCATGAGTCAGAGTCTGCGTTCTCAATG | + |
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Preference number: 6 (lower is better) Translates to: EASNDAVNFLTV*EVHESESAFSM Trigger: CATTGAGAACGCAGACTCTGACTCATGGACTTCCAACACTGTCAAAAAGTTTACTGCATCGTTTGAAGCTTC 43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000030279.15 ENSMUST00000180278.2 |
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