Pregenerated sensors for ATG4A (Mus musculus)
Ensembl gene IDs: ENSMUSG00000079418Ensembl transcript IDs: ENSMUST00000112971.2, ENSMUST00000153742.3, ENSMUST00000239541.1, ENSMUST00000239544.1
Found 109 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR TCA 90 bp | AGCAGGGGTTTCCAGGCTGAGCACGGGACAGAGGTGTCTCTACTCTaGTTGGATGCAGTCAGAAAATCACCAGCTGGGTCAGCAGCACCC | + |
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Preference number: 1 (lower is better) Translates to: SRGFQAEHGTEVSLL*LDAVRKSPAGSAAP Trigger: GGGTGCTGCTGACCCAGCTGGTGATTTTCTGACTGCATCCAATCAGAGTAGAGACACCTCTGTCCCGTGCTCAGCCTGGAAACCCCTGCT 57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000153742.3 |
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| 3UTR CCA 90 bp | GGGGTTTCCAGGCTGAGCACGGGACAGAGGTGTCTCTACTCTGATTaGATGCAGTCAGAAAATCACCAGCTGGGTCAGCAGCACCCACAG | + |
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Preference number: 1 (lower is better) Translates to: GVSRLSTGQRCLYSD*MQSENHQLGQQHPQ Trigger: CTGTGGGTGCTGCTGACCCAGCTGGTGATTTTCTGACTGCATCCAATCAGAGTAGAGACACCTCTGTCCCGTGCTCAGCCTGGAAACCCC 57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000153742.3 |
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| 3UTR GCA 90 bp | AATGCTTTAAGTGAGCGATTGGTAAGGCCAGTCCAGCCTTCCTCTTaGTTTTGTACATCAAATTTTATTAGAGTACAGCCATGCTCGGTC | + |
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Preference number: 1 (lower is better) Translates to: NALSERLVRPVQPSS*FCTSNFIRVQPCSV Trigger: GACCGAGCATGGCTGTACTCTAATAAAATTTGATGTACAAAAGCAAGAGGAAGGCTGGACTGGCCTTACCAATCGCTCACTTAAAGCATT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000112971.2 ENSMUST00000239541.1 ENSMUST00000239544.1 |
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| 3UTR CCA 90 bp | AGTCTTTTCTATCTAGGAAACACTGCAGTATCCTTTGGTATTCTTTaGGTTGTTCTTTTTGTCTCTCCCAGTTCCAATCCCTTCCCAAGT | + |
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Preference number: 1 (lower is better) Translates to: SLFYLGNTAVSFGIL*VVLFVSPSSNPFPS Trigger: ACTTGGGAAGGGATTGGAACTGGGAGAGACAAAAAGAACAACCCAAAGAATACCAAAGGATACTGCAGTGTTTCCTAGATAGAAAAGACT 41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000153742.3 |
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| 3UTR-3UTR CCA 90 bp | CGCCATGTAAGACGAGCTGGGGAGCAATGGATTCTCAATCTTCTCCTAGACTCCGCTTGTGATGCCCGATaGAAGGCAGAAGACCACCTC | + |
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Preference number: 2 (lower is better) Translates to: RHVRRAGEQWILNLLLDSACDAR*KAEDHL Trigger: GAGGTGGTCTTCTGCCTTCCATCGGGCATCACAAGC...GGAGTCTAGGAGAAGATTGAGAATCCATTGCTCCCCAGCTCGTCTTACATGGCG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000112971.2 ENSMUST00000239541.1 ENSMUST00000239544.1 |
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| 3UTR-3UTR TCA 90 bp | CACAGGATTGATTTGGTTTATGCCCAGGCGAAGGGGCACAATGAGCAGCAGGGGAAACCATTCGCCAATTaGTTTCCCTTCTCCTACACC | + |
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Preference number: 2 (lower is better) Translates to: HRIDLVYAQAKGHNEQQGKPFAN*FPFSYT Trigger: GGTGTAGGAGAAGGGAAATCAATTGGCGAATGGTTT...CCCCTGCTGCTCATTGTGCCCCTTCGCCTGGGCATAAACCAAATCAATCCTGTG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000153742.3 |
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| 3UTR CAA 90 bp | GATGCTGTCTGCTTTCCAAATGCCCTCGTTTCCATTGCTGAAGACTaGCTGTCGCCATGTAAGACGAGCTGGGGAGCAATGGATTCTCAA | + |
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Preference number: 2 (lower is better) Translates to: DAVCFPNALVSIAED*LSPCKTSWGAMDSQ Trigger: TTGAGAATCCATTGCTCCCCAGCTCGTCTTACATGGCGACAGCAAGTCTTCAGCAATGGAAACGAGGGCATTTGGAAAGCAGACAGCATC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000112971.2 ENSMUST00000239541.1 ENSMUST00000239544.1 |
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| 3UTR-3UTR CCA 90 bp | GTTTCCAGGCTGAGCACGGGACAGAGGTGTCTCTACTCTGATTGGATGCAGTCACTGTGCAACTGTGTTTaGTCCAAACCATTCGCCAAT | + |
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Preference number: 2 (lower is better) Translates to: VSRLSTGQRCLYSDWMQSLCNCV*SKPFAN Trigger: ATTGGCGAATGGTTTGGACCAAACACAGTTGCACAG...TGACTGCATCCAATCAGAGTAGAGACACCTCTGTCCCGTGCTCAGCCTGGAAAC 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000153742.3 |
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| 3UTR-3UTR TCA 90 bp | CACAGGATTGATTTGGTTTATGCCCAGGCGAAGGGGCACAATGAGCAGCAGGGGTGCCATCTGATGGATTaGATAGCAACAGTCTTTTCT | + |
|
Preference number: 2 (lower is better) Translates to: HRIDLVYAQAKGHNEQQGCHLMD*IATVFS Trigger: AGAAAAGACTGTTGCTATTCAATCCATCAGATGGCA...CCCCTGCTGCTCATTGTGCCCCTTCGCCTGGGCATAAACCAAATCAATCCTGTG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000153742.3 |
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| 3UTR-3UTR TCA 90 bp | TTTCTGTCTTTCCAGGGTGACTCGGTGCCATTGATTTGCTGTTTTTGTTTTGCTCCTCGTTTCCATTGCTaGAGACTTGCTGTCGCCATG | + |
|
Preference number: 2 (lower is better) Translates to: FLSFQGDSVPLICCFCFAPRFHC*RLAVAM Trigger: CATGGCGACAGCAAGTCTTCAGCAATGGAAACGAGG...AGCAAAACAAAAACAGCAAATCAATGGCACCGAGTCACCCTGGAAAGACAGAAA 47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 3 transcripts: ENSMUST00000112971.2 ENSMUST00000239541.1 ENSMUST00000239544.1 |
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| 3UTR-3UTR CCA 90 bp | AAGGATACGGTGACATCTAATGAAAGCATCAGTAAGGATGGAGATTGTGACCTAGCTTGTGATGCCCGATaGAAGGCAGAAGACCACCTC | + |
|
Preference number: 2 (lower is better) Translates to: KDTVTSNESISKDGDCDLACDAR*KAEDHL Trigger: GAGGTGGTCTTCTGCCTTCCATCGGGCATCACAAGC...TAGGTCACAATCTCCATCCTTACTGATGCTTTCATTAGATGTCACCGTATCCTT 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000112971.2 ENSMUST00000239541.1 ENSMUST00000239544.1 |
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| 3UTR-3UTR CCA 90 bp | ACGGTGACATCTAATGAAAGCATCAGTAAGGATGGAGATTGTGACCTATCAAACGCTTGTGATGCCCGATaGAAGGCAGAAGACCACCTC | + |
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Preference number: 2 (lower is better) Translates to: TVTSNESISKDGDCDLSNACDAR*KAEDHL Trigger: GAGGTGGTCTTCTGCCTTCCATCGGGCATCACAAGC...GTTTGATAGGTCACAATCTCCATCCTTACTGATGCTTTCATTAGATGTCACCGT 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000112971.2 ENSMUST00000239541.1 ENSMUST00000239544.1 |
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| 3UTR-3UTR GCA 90 bp | TACTCTGATTGGATGCAGTCAGAAAATCACCAGCTGGGTCAGCAGCACCCACAGCTATCTAGGAAACACTaGAGTATCCTTTGGTATTCT | + |
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Preference number: 2 (lower is better) Translates to: YSDWMQSENHQLGQQHPQLSRKH*SILWYS Trigger: AGAATACCAAAGGATACTGCAGTGTTTCCTAGATAG...CTGTGGGTGCTGCTGACCCAGCTGGTGATTTTCTGACTGCATCCAATCAGAGTA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000153742.3 |
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| 3UTR-3UTR GCA 90 bp | TTTCTGTCTTTCCAGGGTGACTCGGTGCCATTGATTTGCTGTTTTTGTTTTGCTCCATTGCTGAAGACTTaGTGTCGCCATGTAAGACGA | + |
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Preference number: 2 (lower is better) Translates to: FLSFQGDSVPLICCFCFAPLLKT*CRHVRR Trigger: TCGTCTTACATGGCGACAGCAAGTCTTCAGCAATGG...AGCAAAACAAAAACAGCAAATCAATGGCACCGAGTCACCCTGGAAAGACAGAAA 44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 3 transcripts: ENSMUST00000112971.2 ENSMUST00000239541.1 ENSMUST00000239544.1 |
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| 3UTR-3UTR GCA 90 bp | TTTCTGTCTTTCCAGGGTGACTCGGTGCCATTGATTTGCTGTTTTTGTTTTGCTATGGAAGATGCTGTCTaGTTTCCAAATGCCCTCGTT | + |
|
Preference number: 2 (lower is better) Translates to: FLSFQGDSVPLICCFCFAMEDAV*FPNALV Trigger: AACGAGGGCATTTGGAAAGCAGACAGCATCTTCCAT...AGCAAAACAAAAACAGCAAATCAATGGCACCGAGTCACCCTGGAAAGACAGAAA 43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 3 transcripts: ENSMUST00000112971.2 ENSMUST00000239541.1 ENSMUST00000239544.1 |
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| 3UTR-3UTR GCA 90 bp | TTTCTGTCTTTCCAGGGTGACTCGGTGCCATTGATTTGCTGTTTTTGTTTTGCTCAGCAAGATGGAAGATaGTGTCTGCTTTCCAAATGC | + |
|
Preference number: 2 (lower is better) Translates to: FLSFQGDSVPLICCFCFAQQDGR*CLLSKC Trigger: GCATTTGGAAAGCAGACAGCATCTTCCATCTTGCTG...AGCAAAACAAAAACAGCAAATCAATGGCACCGAGTCACCCTGGAAAGACAGAAA 43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 3 transcripts: ENSMUST00000112971.2 ENSMUST00000239541.1 ENSMUST00000239544.1 |
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| 3UTR-3UTR TCA 90 bp | AAGGATACGGTGACATCTAATGAAAGCATCAGTAAGGATGGAGATTGTGACCTATGTGATGGGTGCTTCTaGACCAATTCAAACATCCTC | + |
|
Preference number: 2 (lower is better) Translates to: KDTVTSNESISKDGDCDLCDGCF*TNSNIL Trigger: GAGGATGTTTGAATTGGTTCAGAAGCACCCATCACA...TAGGTCACAATCTCCATCCTTACTGATGCTTTCATTAGATGTCACCGTATCCTT 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000239544.1 |
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| 3UTR-3UTR GCA 90 bp | ACGGTGACATCTAATGAAAGCATCAGTAAGGATGGAGATTGTGACCTATCAAACATGGAAGATGCTGTCTaGTTTCCAAATGCCCTCGTT | + |
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Preference number: 2 (lower is better) Translates to: TVTSNESISKDGDCDLSNMEDAV*FPNALV Trigger: AACGAGGGCATTTGGAAAGCAGACAGCATCTTCCAT...GTTTGATAGGTCACAATCTCCATCCTTACTGATGCTTTCATTAGATGTCACCGT 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000112971.2 ENSMUST00000239541.1 ENSMUST00000239544.1 |
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| 3UTR-3UTR CCA 90 bp | TTTGAATGCTTCAACATACACAGGATTGATTTGGTTTATGCCCAGGCGAAGGGGCACTGCAGTATCCTTTaGTATTCTTTGGGTTGTTCT | + |
|
Preference number: 2 (lower is better) Translates to: FECFNIHRIDLVYAQAKGHCSIL*YSLGCS Trigger: AGAACAACCCAAAGAATACCAAAGGATACTGCAGTG...CCCCTTCGCCTGGGCATAAACCAAATCAATCCTGTGTATGTTGAAGCATTCAAA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000153742.3 |
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| 3UTR-3UTR CCA 90 bp | AAGGATACGGTGACATCTAATGAAAGCATCAGTAAGGATGGAGATTGTGACCTAATAGTTGCAGCAAGATaGAAGATGCTGTCTGCTTTC | + |
|
Preference number: 2 (lower is better) Translates to: KDTVTSNESISKDGDCDLIVAAR*KMLSAF Trigger: GAAAGCAGACAGCATCTTCCATCTTGCTGCAACTAT...TAGGTCACAATCTCCATCCTTACTGATGCTTTCATTAGATGTCACCGTATCCTT 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000112971.2 ENSMUST00000239541.1 ENSMUST00000239544.1 |
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| 3UTR-3UTR CCA 90 bp | TTGAAGGATACGGTGACATCTAATGAAAGCATCAGTAAGGATGGAGATTGTGACATAGTTGCAGCAAGATaGAAGATGCTGTCTGCTTTC | + |
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Preference number: 2 (lower is better) Translates to: LKDTVTSNESISKDGDCDIVAAR*KMLSAF Trigger: GAAAGCAGACAGCATCTTCCATCTTGCTGCAACTAT...GTCACAATCTCCATCCTTACTGATGCTTTCATTAGATGTCACCGTATCCTTCAA 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000112971.2 ENSMUST00000239541.1 ENSMUST00000239544.1 |
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| 3UTR-3UTR GCA 90 bp | AAGGATACGGTGACATCTAATGAAAGCATCAGTAAGGATGGAGATTGTGACCTATCGGTGCCATTGATTTaGTGTTTTTGTTTTGCTTCT | + |
|
Preference number: 2 (lower is better) Translates to: KDTVTSNESISKDGDCDLSVPLI*CFCFAS Trigger: AGAAGCAAAACAAAAACAGCAAATCAATGGCACCGA...TAGGTCACAATCTCCATCCTTACTGATGCTTTCATTAGATGTCACCGTATCCTT 39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 3 transcripts: ENSMUST00000112971.2 ENSMUST00000239541.1 ENSMUST00000239544.1 |
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| 3UTR CCA 72 bp | AGGCTGAGCACGGGACAGAGGTGTCTCTACTCTGATTaGATGCAGTCAGAAAATCACCAGCTGGGTCAGCAG | + |
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Preference number: 3 (lower is better) Translates to: RLSTGQRCLYSD*MQSENHQLGQQ Trigger: CTGCTGACCCAGCTGGTGATTTTCTGACTGCATCCAATCAGAGTAGAGACACCTCTGTCCCGTGCTCAGCCT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000153742.3 |
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| 3UTR TCA 72 bp | TTCCAGGCTGAGCACGGGACAGAGGTGTCTCTACTCTaGTTGGATGCAGTCAGAAAATCACCAGCTGGGTCA | + |
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Preference number: 3 (lower is better) Translates to: FQAEHGTEVSLL*LDAVRKSPAGS Trigger: TGACCCAGCTGGTGATTTTCTGACTGCATCCAATCAGAGTAGAGACACCTCTGTCCCGTGCTCAGCCTGGAA 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000153742.3 |
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| 3UTR-3UTR CAA 90 bp | GTTTCCAGGCTGAGCACGGGACAGAGGTGTCTCTACTCTGATTGGATGCAGTCACCTGTGCAACTGTGTTaGGTCCAAACCATTCGCCAA | + |
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Preference number: 3 (lower is better) Translates to: VSRLSTGQRCLYSDWMQSPVQLC*VQTIRQ Trigger: TTGGCGAATGGTTTGGACCAAACACAGTTGCACAGG...TGACTGCATCCAATCAGAGTAGAGACACCTCTGTCCCGTGCTCAGCCTGGAAAC 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000153742.3 |
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| 3UTR GCA 72 bp | TCTGCCCATAGTTGCAGCAAGATGGAAGATGCTGTCTaGTTTCCAAATGCCCTCGTTTCCATTGCTGAAGAC | + |
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Preference number: 3 (lower is better) Translates to: SAHSCSKMEDAV*FPNALVSIAED Trigger: GTCTTCAGCAATGGAAACGAGGGCATTTGGAAAGCAGACAGCATCTTCCATCTTGCTGCAACTATGGGCAGA 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000112971.2 ENSMUST00000239541.1 ENSMUST00000239544.1 |
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| 3UTR-3UTR CAA 90 bp | CTGTCGCCATGTAAGACGAGCTGGGGAGCAATGGATTCTCAATCTTCTCCTAGACTCGGTGCCATTGATTaGCTGTTTTTGTTTTGCTTC | + |
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Preference number: 3 (lower is better) Translates to: LSPCKTSWGAMDSQSSPRLGAID*LFLFCF Trigger: GAAGCAAAACAAAAACAGCAAATCAATGGCACCGAG...TCTAGGAGAAGATTGAGAATCCATTGCTCCCCAGCTCGTCTTACATGGCGACAG 47% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 3 transcripts: ENSMUST00000112971.2 ENSMUST00000239541.1 ENSMUST00000239544.1 |
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| 3UTR-3UTR CAA 90 bp | CTGTCGCCATGTAAGACGAGCTGGGGAGCAATGGATTCTCAATCTTCTCCTAGAGGTGACTCGGTGCCATaGATTTGCTGTTTTTGTTTT | + |
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Preference number: 3 (lower is better) Translates to: LSPCKTSWGAMDSQSSPRGDSVP*ICCFCF Trigger: AAAACAAAAACAGCAAATCAATGGCACCGAGTCACC...TCTAGGAGAAGATTGAGAATCCATTGCTCCCCAGCTCGTCTTACATGGCGACAG 47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 3 transcripts: ENSMUST00000112971.2 ENSMUST00000239541.1 ENSMUST00000239544.1 |
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| 3UTR CCA 72 bp | ACTTGCTGTCGCCATGTAAGACGAGCTGGGGAGCAATaGATTCTCAATCTTCTCCTAGACTCCATAGTTTTC | + |
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Preference number: 3 (lower is better) Translates to: TCCRHVRRAGEQ*ILNLLLDSIVF Trigger: GAAAACTATGGAGTCTAGGAGAAGATTGAGAATCCATTGCTCCCCAGCTCGTCTTACATGGCGACAGCAAGT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000112971.2 ENSMUST00000239541.1 ENSMUST00000239544.1 |
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| 3UTR-3UTR CAA 90 bp | CGCCATGTAAGACGAGCTGGGGAGCAATGGATTCTCAATCTTCTCCTAGACTCCTTTGCTGTTTTTGTTTaGCTTCTGAACAAGGGACAA | + |
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Preference number: 3 (lower is better) Translates to: RHVRRAGEQWILNLLLDSFAVFV*LLNKGQ Trigger: TTGTCCCTTGTTCAGAAGCAAAACAAAAACAGCAAA...GGAGTCTAGGAGAAGATTGAGAATCCATTGCTCCCCAGCTCGTCTTACATGGCG 46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 3 transcripts: ENSMUST00000112971.2 ENSMUST00000239541.1 ENSMUST00000239544.1 |
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| 3UTR-3UTR CAA 90 bp | TTTGAATGCTTCAACATACACAGGATTGATTTGGTTTATGCCCAGGCGAAGGGGCAAACCATTCGCCAATaGATTTCCCTTCTCCTACAC | + |
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Preference number: 3 (lower is better) Translates to: FECFNIHRIDLVYAQAKGQTIRQ*ISLLLH Trigger: GTGTAGGAGAAGGGAAATCAATTGGCGAATGGTTTG...CCCCTTCGCCTGGGCATAAACCAAATCAATCCTGTGTATGTTGAAGCATTCAAA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000153742.3 |
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| 3UTR-3UTR CAA 90 bp | TTTGAATGCTTCAACATACACAGGATTGATTTGGTTTATGCCCAGGCGAAGGGGACACTGCAGTATCCTTaGGTATTCTTTGGGTTGTTC | + |
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Preference number: 3 (lower is better) Translates to: FECFNIHRIDLVYAQAKGTLQYP*VFFGLF Trigger: GAACAACCCAAAGAATACCAAAGGATACTGCAGTGT...CCCCTTCGCCTGGGCATAAACCAAATCAATCCTGTGTATGTTGAAGCATTCAAA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000153742.3 |
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| 3UTR GCA 72 bp | AGTGAGCGATTGGTAAGGCCAGTCCAGCCTTCCTCTTaGTTTTGTACATCAAATTTTATTAGAGTACAGCCA | + |
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Preference number: 3 (lower is better) Translates to: SERLVRPVQPSS*FCTSNFIRVQP Trigger: TGGCTGTACTCTAATAAAATTTGATGTACAAAAGCAAGAGGAAGGCTGGACTGGCCTTACCAATCGCTCACT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000112971.2 ENSMUST00000239541.1 ENSMUST00000239544.1 |
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| 3UTR-3UTR CAA 90 bp | TTTCTGTCTTTCCAGGGTGACTCGGTGCCATTGATTTGCTGTTTTTGTTTTGCTCTCGGTGCCATTGATTaGCTGTTTTTGTTTTGCTTC | + |
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Preference number: 3 (lower is better) Translates to: FLSFQGDSVPLICCFCFALGAID*LFLFCF Trigger: GAAGCAAAACAAAAACAGCAAATCAATGGCACCGAG...AGCAAAACAAAAACAGCAAATCAATGGCACCGAGTCACCCTGGAAAGACAGAAA 42% GC, longest homopolymer 5 nt, total homopolymer stretches 18 nt. Matches the following 3 transcripts: ENSMUST00000112971.2 ENSMUST00000239541.1 ENSMUST00000239544.1 |
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| 3UTR-3UTR CAA 90 bp | TTTCTGTCTTTCCAGGGTGACTCGGTGCCATTGATTTGCTGTTTTTGTTTTGCTCTGGCTCAGTCATCATaGTTATTGAGTTTGTATGCT | + |
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Preference number: 3 (lower is better) Translates to: FLSFQGDSVPLICCFCFALAQSS*LLSLYA Trigger: AGCATACAAACTCAATAACAATGATGACTGAGCCAG...AGCAAAACAAAAACAGCAAATCAATGGCACCGAGTCACCCTGGAAAGACAGAAA 41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 3 transcripts: ENSMUST00000112971.2 ENSMUST00000239541.1 ENSMUST00000239544.1 |
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| 3UTR-3UTR CAA 90 bp | TTGAAGGATACGGTGACATCTAATGAAAGCATCAGTAAGGATGGAGATTGTGACCTGGCTCAGTCATCATaGTTATTGAGTTTGTATGCT | + |
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Preference number: 3 (lower is better) Translates to: LKDTVTSNESISKDGDCDLAQSS*LLSLYA Trigger: AGCATACAAACTCAATAACAATGATGACTGAGCCAG...GTCACAATCTCCATCCTTACTGATGCTTTCATTAGATGTCACCGTATCCTTCAA 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000112971.2 ENSMUST00000239541.1 ENSMUST00000239544.1 |
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| 3UTR-3UTR CAA 90 bp | TTTCTGTCTTTCCAGGGTGACTCGGTGCCATTGATTTGCTGTTTTTGTTTTGCTTTTGCTGTTTTTGTTTaGCTTCTGAACAAGGGACAA | + |
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Preference number: 3 (lower is better) Translates to: FLSFQGDSVPLICCFCFAFAVFV*LLNKGQ Trigger: TTGTCCCTTGTTCAGAAGCAAAACAAAAACAGCAAA...AGCAAAACAAAAACAGCAAATCAATGGCACCGAGTCACCCTGGAAAGACAGAAA 40% GC, longest homopolymer 5 nt, total homopolymer stretches 18 nt. Matches the following 3 transcripts: ENSMUST00000112971.2 ENSMUST00000239541.1 ENSMUST00000239544.1 |
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| 3UTR-3UTR CAA 90 bp | ACGGTGACATCTAATGAAAGCATCAGTAAGGATGGAGATTGTGACCTATCAAACTTTGCTGTTTTTGTTTaGCTTCTGAACAAGGGACAA | + |
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Preference number: 3 (lower is better) Translates to: TVTSNESISKDGDCDLSNFAVFV*LLNKGQ Trigger: TTGTCCCTTGTTCAGAAGCAAAACAAAAACAGCAAA...GTTTGATAGGTCACAATCTCCATCCTTACTGATGCTTTCATTAGATGTCACCGT 39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENSMUST00000112971.2 ENSMUST00000239541.1 ENSMUST00000239544.1 |
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| 3UTR TCA 72 bp | TTATTTAAACCTTCAAACAAAAATCAATGCTTTAAGTaGGCGATTGGTAAGGCCAGTCCAGCCTTCCTCTTG | + |
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Preference number: 3 (lower is better) Translates to: LFKPSNKNQCFK*AIGKASPAFLL Trigger: CAAGAGGAAGGCTGGACTGGCCTTACCAATCGCTCACTTAAAGCATTGATTTTTGTTTGAAGGTTTAAATAA 39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENSMUST00000112971.2 ENSMUST00000239541.1 ENSMUST00000239544.1 |
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| CDS-3UTR TCA 90 bp | CACAGGATTGATTTGGTTTATGCCCAGGCGAAGGGGCACAATGAGCAGCAGGGGCCATCCAGCATCAGATaGAGGGCCTGTTCCCCCTGC | + |
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Preference number: 4 (lower is better) Translates to: HRIDLVYAQAKGHNEQQGPSSIR*RACSPC Trigger: GCAGGGGGAACAGGCCCTTCATCTGATGCTGGATGG...CCCCTGCTGCTCATTGTGCCCCTTCGCCTGGGCATAAACCAAATCAATCCTGTG 58% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000153742.3 |
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| CDS-3UTR TCA 90 bp | GCTTTCCAAATGCCCTCGTTTCCATTGCTGAAGACTTGCTGTCGCCATGTAAGACAGGGGTTTCCAGGCTaGGCACGGGACAGAGGTGTC | + |
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Preference number: 4 (lower is better) Translates to: AFQMPSFPLLKTCCRHVRQGFPG*ARDRGV Trigger: GACACCTCTGTCCCGTGCTCAGCCTGGAAACCCCTG...TCTTACATGGCGACAGCAAGTCTTCAGCAATGGAAACGAGGGCATTTGGAAAGC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000112971.2 ENSMUST00000239541.1 ENSMUST00000239544.1 |
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| CDS-3UTR TCA 90 bp | CGCCATGTAAGACGAGCTGGGGAGCAATGGATTCTCAATCTTCTCCTAGACTCCAAAGGGAGGCCAGTGTaGTGGGTGCTTCTGAACCAA | + |
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Preference number: 4 (lower is better) Translates to: RHVRRAGEQWILNLLLDSKGRPV*WVLLNQ Trigger: TTGGTTCAGAAGCACCCATCACACTGGCCTCCCTTT...GGAGTCTAGGAGAAGATTGAGAATCCATTGCTCCCCAGCTCGTCTTACATGGCG 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000112971.2 ENSMUST00000239541.1 |
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| 3UTR CAA 72 bp | TGCTTTCCAAATGCCCTCGTTTCCATTGCTGAAGACTaGCTGTCGCCATGTAAGACGAGCTGGGGAGCAATG | + |
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Preference number: 4 (lower is better) Translates to: CFPNALVSIAED*LSPCKTSWGAM Trigger: CATTGCTCCCCAGCTCGTCTTACATGGCGACAGCAAGTCTTCAGCAATGGAAACGAGGGCATTTGGAAAGCA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000112971.2 ENSMUST00000239541.1 ENSMUST00000239544.1 |
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| CDS-3UTR TCA 90 bp | TTTGTTTTGCTTCTGAACAAGGGACAACTGGCTCAGTCATCATTGTTATTGAGTCAGGGGTTTCCAGGCTaGGCACGGGACAGAGGTGTC | + |
|
Preference number: 4 (lower is better) Translates to: FVLLLNKGQLAQSSLLLSQGFPG*ARDRGV Trigger: GACACCTCTGTCCCGTGCTCAGCCTGGAAACCCCTG...ACTCAATAACAATGATGACTGAGCCAGTTGTCCCTTGTTCAGAAGCAAAACAAA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000112971.2 ENSMUST00000239541.1 ENSMUST00000239544.1 |
||
| CDS-3UTR TCA 90 bp | GCTTTCCAAATGCCCTCGTTTCCATTGCTGAAGACTTGCTGTCGCCATGTAAGAGGAGACTGCAGGCAATaGAAAGTCTGGTCGTCTACT | + |
|
Preference number: 4 (lower is better) Translates to: AFQMPSFPLLKTCCRHVRGDCRQ*KVWSST Trigger: AGTAGACGACCAGACTTTTCATTGCCTGCAGTCTCC...TCTTACATGGCGACAGCAAGTCTTCAGCAATGGAAACGAGGGCATTTGGAAAGC 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000112971.2 ENSMUST00000239541.1 |
||
| CDS-3UTR TCA 90 bp | CTTGCTGACCAGAAAAGTTTTCATGTGCTTGTGATGCCCGATGGAAGGCAGAAGGGAGACTGCAGGCAATaGAAAGTCTGGTCGTCTACT | + |
|
Preference number: 4 (lower is better) Translates to: LADQKSFHVLVMPDGRQKGDCRQ*KVWSST Trigger: AGTAGACGACCAGACTTTTCATTGCCTGCAGTCTCC...CTTCTGCCTTCCATCGGGCATCACAAGCACATGAAAACTTTTCTGGTCAGCAAG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000112971.2 ENSMUST00000239541.1 |
||
| CDS-3UTR TCA 90 bp | CGCCATGTAAGACGAGCTGGGGAGCAATGGATTCTCAATCTTCTCCTAGACTCCTGTGATGGGTGCTTCTaGACCAATTCAAACATCCTC | + |
|
Preference number: 4 (lower is better) Translates to: RHVRRAGEQWILNLLLDSCDGCF*TNSNIL Trigger: GAGGATGTTTGAATTGGTTCAGAAGCACCCATCACA...GGAGTCTAGGAGAAGATTGAGAATCCATTGCTCCCCAGCTCGTCTTACATGGCG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000112971.2 ENSMUST00000239541.1 |
||
| CDS-3UTR TCA 90 bp | GAATTTCCTTCTGAACAAGGCTACACCAATTATCAAAGTCTTTCTCTTCTTTGCCAGGGGTTTCCAGGCTaGGCACGGGACAGAGGTGTC | + |
|
Preference number: 4 (lower is better) Translates to: EFPSEQGYTNYQSLSLLCQGFPG*ARDRGV Trigger: GACACCTCTGTCCCGTGCTCAGCCTGGAAACCCCTG...GCAAAGAAGAGAAAGACTTTGATAATTGGTGTAGCCTTGTTCAGAAGGAAATTC 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000239544.1 |
||
| CDS-3UTR TCA 90 bp | CTGTCGCCATGTAAGACGAGCTGGGGAGCAATGGATTCTCAATCTTCTCCTAGACAACATACACAGGATTaGTTTGGTTTATGCCCAGGC | + |
|
Preference number: 4 (lower is better) Translates to: LSPCKTSWGAMDSQSSPRQHTQD*FGLCPG Trigger: GCCTGGGCATAAACCAAATCAATCCTGTGTATGTTG...TCTAGGAGAAGATTGAGAATCCATTGCTCCCCAGCTCGTCTTACATGGCGACAG 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000112971.2 ENSMUST00000239541.1 ENSMUST00000239544.1 |
||
| CDS-3UTR TCA 90 bp | AAGGATACGGTGACATCTAATGAAAGCATCAGTAAGGATGGAGATTGTGACCTACCATCCAGCATCAGATaGAGGGCCTGTTCCCCCTGT | + |
|
Preference number: 4 (lower is better) Translates to: KDTVTSNESISKDGDCDLPSSIR*RACSPC Trigger: ACAGGGGGAACAGGCCCTTCATCTGATGCTGGATGG...TAGGTCACAATCTCCATCCTTACTGATGCTTTCATTAGATGTCACCGTATCCTT 48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000239541.1 |
||
| CDS-3UTR GCA 90 bp | GGCCACAGAAGGATCCAAGTTCAGGATACTCATCCGCTGTGGAGACTGCAGGCACTATCTAGGAAACACTaGAGTATCCTTTGGTATTCT | + |
|
Preference number: 4 (lower is better) Translates to: GHRRIQVQDTHPLWRLQALSRKH*SILWYS Trigger: AGAATACCAAAGGATACTGCAGTGTTTCCTAGATAG...TGCCTGCAGTCTCCACAGCGGATGAGTATCCTGAACTTGGATCCTTCTGTGGCC 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000239544.1 |
||
| CDS-3UTR TCA 90 bp | GCTTTCCAAATGCCCTCGTTTCCATTGCTGAAGACTTGCTGTCGCCATGTAAGAAAACCATTCGCCAATTaGTTTCCCTTCTCCTACACC | + |
|
Preference number: 4 (lower is better) Translates to: AFQMPSFPLLKTCCRHVRKPFAN*FPFSYT Trigger: GGTGTAGGAGAAGGGAAATCAATTGGCGAATGGTTT...TCTTACATGGCGACAGCAAGTCTTCAGCAATGGAAACGAGGGCATTTGGAAAGC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000112971.2 ENSMUST00000239541.1 |
||
| CDS-3UTR TCA 90 bp | CTTGCTGACCAGAAAAGTTTTCATGTGCTTGTGATGCCCGATGGAAGGCAGAAGGAGGTGTCTCTACTCTaGTTGGATGCAGTCAGAAAA | + |
|
Preference number: 4 (lower is better) Translates to: LADQKSFHVLVMPDGRQKEVSLL*LDAVRK Trigger: TTTTCTGACTGCATCCAATCAGAGTAGAGACACCTC...CTTCTGCCTTCCATCGGGCATCACAAGCACATGAAAACTTTTCTGGTCAGCAAG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000112971.2 ENSMUST00000239541.1 ENSMUST00000239544.1 |
||
| CDS-3UTR GCA 90 bp | CTGTCGCCATGTAAGACGAGCTGGGGAGCAATGGATTCTCAATCTTCTCCTAGATCTACTCTGATTGGATaGAGTCAGAAAATCACCAGC | + |
|
Preference number: 4 (lower is better) Translates to: LSPCKTSWGAMDSQSSPRSTLIG*SQKITS Trigger: GCTGGTGATTTTCTGACTGCATCCAATCAGAGTAGA...TCTAGGAGAAGATTGAGAATCCATTGCTCCCCAGCTCGTCTTACATGGCGACAG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000112971.2 ENSMUST00000239541.1 ENSMUST00000239544.1 |
||
| CDS-3UTR CCA 90 bp | CTTGCTGACCAGAAAAGTTTTCATGTGCTTGTGATGCCCGATGGAAGGCAGAAGCTGTGCAACTGTGTTTaGTCCAAACCATTCGCCAAT | + |
|
Preference number: 4 (lower is better) Translates to: LADQKSFHVLVMPDGRQKLCNCV*SKPFAN Trigger: ATTGGCGAATGGTTTGGACCAAACACAGTTGCACAG...CTTCTGCCTTCCATCGGGCATCACAAGCACATGAAAACTTTTCTGGTCAGCAAG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000112971.2 ENSMUST00000239541.1 |
||
| CDS-3UTR TCA 90 bp | AAGGATACGGTGACATCTAATGAAAGCATCAGTAAGGATGGAGATTGTGACCTAAAAGGGAGGCCAGTGTaGTGGGTGCTTCTGAACCAA | + |
|
Preference number: 4 (lower is better) Translates to: KDTVTSNESISKDGDCDLKGRPV*WVLLNQ Trigger: TTGGTTCAGAAGCACCCATCACACTGGCCTCCCTTT...TAGGTCACAATCTCCATCCTTACTGATGCTTTCATTAGATGTCACCGTATCCTT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000112971.2 ENSMUST00000239541.1 |
||
| CDS-3UTR TCA 90 bp | GCTTTCCAAATGCCCTCGTTTCCATTGCTGAAGACTTGCTGTCGCCATGTAAGATGCCATCTGATGGATTaGATAGCAACAGTCTTTTCT | + |
|
Preference number: 4 (lower is better) Translates to: AFQMPSFPLLKTCCRHVRCHLMD*IATVFS Trigger: AGAAAAGACTGTTGCTATTCAATCCATCAGATGGCA...TCTTACATGGCGACAGCAAGTCTTCAGCAATGGAAACGAGGGCATTTGGAAAGC 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000112971.2 ENSMUST00000239541.1 |
||
| 3UTR CAA 72 bp | AATTTCAAAATCTTCCTCCAGCTCAAAGTCCTCCAGTaGTTCAGTCGACTCTATGAATTCTGCCCCTGTGGT | + |
|
Preference number: 4 (lower is better) Translates to: NFKIFLQLKVLQ*FSRLYEFCPCG Trigger: ACCACAGGGGCAGAATTCATAGAGTCGACTGAACAACTGGAGGACTTTGAGCTGGAGGAAGATTTTGAAATT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000239544.1 |
||
| CDS-3UTR GCA 90 bp | GCTTTCCAAATGCCCTCGTTTCCATTGCTGAAGACTTGCTGTCGCCATGTAAGACTATCTAGGAAACACTaGAGTATCCTTTGGTATTCT | + |
|
Preference number: 4 (lower is better) Translates to: AFQMPSFPLLKTCCRHVRLSRKH*SILWYS Trigger: AGAATACCAAAGGATACTGCAGTGTTTCCTAGATAG...TCTTACATGGCGACAGCAAGTCTTCAGCAATGGAAACGAGGGCATTTGGAAAGC 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000112971.2 ENSMUST00000239541.1 ENSMUST00000239544.1 |
||
| CDS-3UTR CCA 90 bp | AAGGATACGGTGACATCTAATGAAAGCATCAGTAAGGATGGAGATTGTGACCTAGATACTCATCCGCTGTaGAGACTGCAGGCAATGAAA | + |
|
Preference number: 4 (lower is better) Translates to: KDTVTSNESISKDGDCDLDTHPL*RLQAMK Trigger: TTTCATTGCCTGCAGTCTCCACAGCGGATGAGTATC...TAGGTCACAATCTCCATCCTTACTGATGCTTTCATTAGATGTCACCGTATCCTT 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000112971.2 ENSMUST00000239541.1 |
||
| 3UTR CAA 72 bp | TCAGCAGCACCCACAGGAAGAACACAGCACATTTTCTaGATATCTTCAATGACCACTGTGTTATCCATGGAA | + |
|
Preference number: 4 (lower is better) Translates to: SAAPTGRTQHIF*ISSMTTVLSME Trigger: TTCCATGGATAACACAGTGGTCATTGAAGATATCAAGAAAATGTGCTGTGTTCTTCCTGTGGGTGCTGCTGA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000153742.3 |
||
| CDS-3UTR TCA 90 bp | TTGAAGGATACGGTGACATCTAATGAAAGCATCAGTAAGGATGGAGATTGTGACAAACCATTCGCCAATTaGTTTCCCTTCTCCTACACC | + |
|
Preference number: 4 (lower is better) Translates to: LKDTVTSNESISKDGDCDKPFAN*FPFSYT Trigger: GGTGTAGGAGAAGGGAAATCAATTGGCGAATGGTTT...GTCACAATCTCCATCCTTACTGATGCTTTCATTAGATGTCACCGTATCCTTCAA 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000112971.2 ENSMUST00000239541.1 |
||
| CDS-3UTR TCA 90 bp | TTGAAGGATACGGTGACATCTAATGAAAGCATCAGTAAGGATGGAGATTGTGACCAACATACACAGGATTaGTTTGGTTTATGCCCAGGC | + |
|
Preference number: 4 (lower is better) Translates to: LKDTVTSNESISKDGDCDQHTQD*FGLCPG Trigger: GCCTGGGCATAAACCAAATCAATCCTGTGTATGTTG...GTCACAATCTCCATCCTTACTGATGCTTTCATTAGATGTCACCGTATCCTTCAA 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000112971.2 ENSMUST00000239541.1 ENSMUST00000239544.1 |
||
| CDS-3UTR TCA 90 bp | ACGGTGACATCTAATGAAAGCATCAGTAAGGATGGAGATTGTGACCTATCAAACCAACATACACAGGATTaGTTTGGTTTATGCCCAGGC | + |
|
Preference number: 4 (lower is better) Translates to: TVTSNESISKDGDCDLSNQHTQD*FGLCPG Trigger: GCCTGGGCATAAACCAAATCAATCCTGTGTATGTTG...GTTTGATAGGTCACAATCTCCATCCTTACTGATGCTTTCATTAGATGTCACCGT 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000112971.2 ENSMUST00000239541.1 ENSMUST00000239544.1 |
||
| CDS-3UTR CCA 90 bp | AAGGATACGGTGACATCTAATGAAAGCATCAGTAAGGATGGAGATTGTGACCTACTGTGCAACTGTGTTTaGTCCAAACCATTCGCCAAT | + |
|
Preference number: 4 (lower is better) Translates to: KDTVTSNESISKDGDCDLLCNCV*SKPFAN Trigger: ATTGGCGAATGGTTTGGACCAAACACAGTTGCACAG...TAGGTCACAATCTCCATCCTTACTGATGCTTTCATTAGATGTCACCGTATCCTT 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000112971.2 ENSMUST00000239541.1 |
||
| CDS-3UTR CCA 90 bp | TTGAAGGATACGGTGACATCTAATGAAAGCATCAGTAAGGATGGAGATTGTGACTACACAGGATTGATTTaGTTTATGCCCAGGCGAAGG | + |
|
Preference number: 4 (lower is better) Translates to: LKDTVTSNESISKDGDCDYTGLI*FMPRRR Trigger: CCTTCGCCTGGGCATAAACCAAATCAATCCTGTGTA...GTCACAATCTCCATCCTTACTGATGCTTTCATTAGATGTCACCGTATCCTTCAA 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000112971.2 ENSMUST00000239541.1 ENSMUST00000239544.1 |
||
| CDS-3UTR CCA 90 bp | GTTTTTGTTTTGCTTCTGAACAAGGGACAACTGGCTCAGTCATCATTGTTATTGGATACTCATCCGCTGTaGAGACTGCAGGCAATGAAA | + |
|
Preference number: 4 (lower is better) Translates to: VFVLLLNKGQLAQSSLLLDTHPL*RLQAMK Trigger: TTTCATTGCCTGCAGTCTCCACAGCGGATGAGTATC...CAATAACAATGATGACTGAGCCAGTTGTCCCTTGTTCAGAAGCAAAACAAAAAC 42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000112971.2 ENSMUST00000239541.1 |
||
| 3UTR CAA 72 bp | TTTATTAGAGTACAGCCATGCTCGGTCACATGCATATaGTCTGGGACTGCTTTTACAGAGGAGAATAGTTAC | + |
|
Preference number: 4 (lower is better) Translates to: FIRVQPCSVTCI*SGTAFTEENSY Trigger: GTAACTATTCTCCTCTGTAAAAGCAGTCCCAGACAATATGCATGTGACCGAGCATGGCTGTACTCTAATAAA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000112971.2 ENSMUST00000239541.1 ENSMUST00000239544.1 |
||
| CDS-3UTR TCA 90 bp | TTTCTGTCTTTCCAGGGTGACTCGGTGCCATTGATTTGCTGTTTTTGTTTTGCTTGCCATCTGATGGATTaGATAGCAACAGTCTTTTCT | + |
|
Preference number: 4 (lower is better) Translates to: FLSFQGDSVPLICCFCFACHLMD*IATVFS Trigger: AGAAAAGACTGTTGCTATTCAATCCATCAGATGGCA...AGCAAAACAAAAACAGCAAATCAATGGCACCGAGTCACCCTGGAAAGACAGAAA 41% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 2 transcripts: ENSMUST00000112971.2 ENSMUST00000239541.1 |
||
| CDS-3UTR GCA 90 bp | TTTCTATCTAGGAAACACTGCAGTATCCTTTGGTATTCTTTGGGTTGTTCTTTTAGGGCCTGTTCCCCCTaGTCCCCTAAATCAAATTCT | + |
|
Preference number: 4 (lower is better) Translates to: FLSRKHCSILWYSLGCSFRACSP*SPKSNS Trigger: AGAATTTGATTTAGGGGAGCAGGGGGAACAGGCCCT...AAAAGAACAACCCAAAGAATACCAAAGGATACTGCAGTGTTTCCTAGATAGAAA 41% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000153742.3 |
||
| CDS-3UTR CCA 90 bp | GTTTTTGTTTTGCTTCTGAACAAGGGACAACTGGCTCAGTCATCATTGTTATTGTACACAGGATTGATTTaGTTTATGCCCAGGCGAAGG | + |
|
Preference number: 4 (lower is better) Translates to: VFVLLLNKGQLAQSSLLLYTGLI*FMPRRR Trigger: CCTTCGCCTGGGCATAAACCAAATCAATCCTGTGTA...CAATAACAATGATGACTGAGCCAGTTGTCCCTTGTTCAGAAGCAAAACAAAAAC 41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 3 transcripts: ENSMUST00000112971.2 ENSMUST00000239541.1 ENSMUST00000239544.1 |
||
| CDS-3UTR GCA 90 bp | TTTGTTTTGCTTCTGAACAAGGGACAACTGGCTCAGTCATCATTGTTATTGAGTTCTACTCTGATTGGATaGAGTCAGAAAATCACCAGC | + |
|
Preference number: 4 (lower is better) Translates to: FVLLLNKGQLAQSSLLLSSTLIG*SQKITS Trigger: GCTGGTGATTTTCTGACTGCATCCAATCAGAGTAGA...ACTCAATAACAATGATGACTGAGCCAGTTGTCCCTTGTTCAGAAGCAAAACAAA 40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000112971.2 ENSMUST00000239541.1 ENSMUST00000239544.1 |
||
| CDS-3UTR CCA 90 bp | AAGGATACGGTGACATCTAATGAAAGCATCAGTAAGGATGGAGATTGTGACCTACACTGCAGTATCCTTTaGTATTCTTTGGGTTGTTCT | + |
|
Preference number: 4 (lower is better) Translates to: KDTVTSNESISKDGDCDLHCSIL*YSLGCS Trigger: AGAACAACCCAAAGAATACCAAAGGATACTGCAGTG...TAGGTCACAATCTCCATCCTTACTGATGCTTTCATTAGATGTCACCGTATCCTT 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000112971.2 ENSMUST00000239541.1 ENSMUST00000239544.1 |
||
| CDS-3UTR CCA 90 bp | ACGGTGACATCTAATGAAAGCATCAGTAAGGATGGAGATTGTGACCTATCAAACCACTGCAGTATCCTTTaGTATTCTTTGGGTTGTTCT | + |
|
Preference number: 4 (lower is better) Translates to: TVTSNESISKDGDCDLSNHCSIL*YSLGCS Trigger: AGAACAACCCAAAGAATACCAAAGGATACTGCAGTG...GTTTGATAGGTCACAATCTCCATCCTTACTGATGCTTTCATTAGATGTCACCGT 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000112971.2 ENSMUST00000239541.1 ENSMUST00000239544.1 |
||
| CDS-3UTR TCA 90 bp | TTTGTTTTGCTTCTGAACAAGGGACAACTGGCTCAGTCATCATTGTTATTGAGTCTCCATCTGATGGATTaGATAGCAACAGTCTTTTCT | + |
|
Preference number: 4 (lower is better) Translates to: FVLLLNKGQLAQSSLLLSLHLMD*IATVFS Trigger: AGAAAAGACTGTTGCTATTCAATCCATCAGATGGAG...ACTCAATAACAATGATGACTGAGCCAGTTGTCCCTTGTTCAGAAGCAAAACAAA 39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000239544.1 |
||
| CDS-3UTR GCA 90 bp | AAGGATACGGTGACATCTAATGAAAGCATCAGTAAGGATGGAGATTGTGACCTACTATCTAGGAAACACTaGAGTATCCTTTGGTATTCT | + |
|
Preference number: 4 (lower is better) Translates to: KDTVTSNESISKDGDCDLLSRKH*SILWYS Trigger: AGAATACCAAAGGATACTGCAGTGTTTCCTAGATAG...TAGGTCACAATCTCCATCCTTACTGATGCTTTCATTAGATGTCACCGTATCCTT 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000112971.2 ENSMUST00000239541.1 ENSMUST00000239544.1 |
||
| CDS-3UTR CCA 90 bp | TTTGTTTTGCTTCTGAACAAGGGACAACTGGCTCAGTCATCATTGTTATTGAGTTGTCTCTACTCTGATTaGATGCAGTCAGAAAATCAC | + |
|
Preference number: 4 (lower is better) Translates to: FVLLLNKGQLAQSSLLLSCLYSD*MQSENH Trigger: GTGATTTTCTGACTGCATCCAATCAGAGTAGAGACA...ACTCAATAACAATGATGACTGAGCCAGTTGTCCCTTGTTCAGAAGCAAAACAAA 39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000112971.2 ENSMUST00000239541.1 ENSMUST00000239544.1 |
||
| CDS-3UTR GCA 90 bp | GTTTTTGTTTTGCTTCTGAACAAGGGACAACTGGCTCAGTCATCATTGTTATTGGCTCATCTCTTTGAATaGTTCAACATACACAGGATT | + |
|
Preference number: 4 (lower is better) Translates to: VFVLLLNKGQLAQSSLLLAHLFE*FNIHRI Trigger: AATCCTGTGTATGTTGAAGCATTCAAAGAGATGAGC...CAATAACAATGATGACTGAGCCAGTTGTCCCTTGTTCAGAAGCAAAACAAAAAC 38% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000239544.1 |
||
| CDS CCA 90 bp | AGAGGTGTCTCTACTCTGATTGGATGCAGTCAGAAAATCACCAGCTaGGTCAGCAGCACCCACAGGAAGAACACAGCACATTTTCTCCAT | + |
|
Preference number: 5 (lower is better) Translates to: RGVSTLIGCSQKITS*VSSTHRKNTAHFLH Trigger: ATGGAGAAAATGTGCTGTGTTCTTCCTGTGGGTGCTGCTGACCCAGCTGGTGATTTTCTGACTGCATCCAATCAGAGTAGAGACACCTCT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000239544.1 |
||
| CDS-3UTR CAA 90 bp | CGCCATGTAAGACGAGCTGGGGAGCAATGGATTCTCAATCTTCTCCTAGACTCCCAAACCATTCGCCAATaGATTTCCCTTCTCCTACAC | + |
|
Preference number: 5 (lower is better) Translates to: RHVRRAGEQWILNLLLDSQTIRQ*ISLLLH Trigger: GTGTAGGAGAAGGGAAATCAATTGGCGAATGGTTTG...GGAGTCTAGGAGAAGATTGAGAATCCATTGCTCCCCAGCTCGTCTTACATGGCG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000112971.2 ENSMUST00000239541.1 |
||
| CDS-3UTR CAA 90 bp | GCTTTCCAAATGCCCTCGTTTCCATTGCTGAAGACTTGCTGTCGCCATGTAAGACCTGTGCAACTGTGTTaGGTCCAAACCATTCGCCAA | + |
|
Preference number: 5 (lower is better) Translates to: AFQMPSFPLLKTCCRHVRPVQLC*VQTIRQ Trigger: TTGGCGAATGGTTTGGACCAAACACAGTTGCACAGG...TCTTACATGGCGACAGCAAGTCTTCAGCAATGGAAACGAGGGCATTTGGAAAGC 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000112971.2 ENSMUST00000239541.1 |
||
| CDS-3UTR CAA 90 bp | CGCCATGTAAGACGAGCTGGGGAGCAATGGATTCTCAATCTTCTCCTAGACTCCATACACAGGATTGATTaGGTTTATGCCCAGGCGAAG | + |
|
Preference number: 5 (lower is better) Translates to: RHVRRAGEQWILNLLLDSIHRID*VYAQAK Trigger: CTTCGCCTGGGCATAAACCAAATCAATCCTGTGTAT...GGAGTCTAGGAGAAGATTGAGAATCCATTGCTCCCCAGCTCGTCTTACATGGCG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000112971.2 ENSMUST00000239541.1 ENSMUST00000239544.1 |
||
| CDS TCA 90 bp | GGATCCAAGTTCAGGATACTCATCCGCTGTGGAGACTGCAGGCAATaGAAAGTCTGGTCGTCTACTAGTCCACTCTCTTCAATGTCAACA | + |
|
Preference number: 5 (lower is better) Translates to: GSKFRILIRCGDCRQ*KVWSSTSPLSSMST Trigger: TGTTGACATTGAAGAGAGTGGACTAGTAGACGACCAGACTTTTCATTGCCTGCAGTCTCCACAGCGGATGAGTATCCTGAACTTGGATCC 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000112971.2 ENSMUST00000239541.1 |
||
| CDS TCA 90 bp | AGGGCCTGTTCCCCCTGCTCCCCTAAATCAAATTCTTTGCCAGAGTaGGCTGTTAGTTCTGAGGTTTCTGTGATGCCATTGATAACCTCA | + |
|
Preference number: 5 (lower is better) Translates to: RACSPCSPKSNSLPE*AVSSEVSVMPLITS Trigger: TGAGGTTATCAATGGCATCACAGAAACCTCAGAACTAACAGCTCACTCTGGCAAAGAATTTGATTTAGGGGAGCAGGGGGAACAGGCCCT 48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000153742.3 |
||
| CDS GCA 90 bp | ATGCCATTGATAACCTCAGGCAAACTATCTGTCTTAAGGGGGTGCTaGTTCCCCAGAATCCATACCAGCTCATCTGTATCCGGGAATTCT | + |
|
Preference number: 5 (lower is better) Translates to: MPLITSGKLSVLRGC*FPRIHTSSSVSGNS Trigger: AGAATTCCCGGATACAGATGAGCTGGTATGGATTCTGGGGAAGCAGCACCCCCTTAAGACAGATAGTTTGCCTGAGGTTATCAATGGCAT 48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000153742.3 |
||
| CDS-3UTR CAA 90 bp | TACTCTGATTGGATGCAGTCAGAAAATCACCAGCTGGGTCAGCAGCACCCACAGGTTTCTGTGATGCCATaGATAACCTCAGGCAAACTA | + |
|
Preference number: 5 (lower is better) Translates to: YSDWMQSENHQLGQQHPQVSVMP*ITSGKL Trigger: TAGTTTGCCTGAGGTTATCAATGGCATCACAGAAAC...CTGTGGGTGCTGCTGACCCAGCTGGTGATTTTCTGACTGCATCCAATCAGAGTA 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000153742.3 |
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| CDS CCA 90 bp | AATGAGCTCATCTCTTTGAATGCTTCAACATACACAGGATTGATTTaGTTTATGCCCAGGCGAAGGGGCACAATGAGCAGCAGGGGTTTC | + |
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Preference number: 5 (lower is better) Translates to: NELISLNASTYTGLI*FMPRRRGTMSSRGF Trigger: GAAACCCCTGCTGCTCATTGTGCCCCTTCGCCTGGGCATAAACCAAATCAATCCTGTGTATGTTGAAGCATTCAAAGAGATGAGCTCATT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000239544.1 |
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| CDS-3UTR CAA 90 bp | CTGTCGCCATGTAAGACGAGCTGGGGAGCAATGGATTCTCAATCTTCTCCTAGAACACTGCAGTATCCTTaGGTATTCTTTGGGTTGTTC | + |
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Preference number: 5 (lower is better) Translates to: LSPCKTSWGAMDSQSSPRTLQYP*VFFGLF Trigger: GAACAACCCAAAGAATACCAAAGGATACTGCAGTGT...TCTAGGAGAAGATTGAGAATCCATTGCTCCCCAGCTCGTCTTACATGGCGACAG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000112971.2 ENSMUST00000239541.1 ENSMUST00000239544.1 |
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| CDS-3UTR CAA 90 bp | GCTTTCCAAATGCCCTCGTTTCCATTGCTGAAGACTTGCTGTCGCCATGTAAGAATACACAGGATTGATTaGGTTTATGCCCAGGCGAAG | + |
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Preference number: 5 (lower is better) Translates to: AFQMPSFPLLKTCCRHVRIHRID*VYAQAK Trigger: CTTCGCCTGGGCATAAACCAAATCAATCCTGTGTAT...TCTTACATGGCGACAGCAAGTCTTCAGCAATGGAAACGAGGGCATTTGGAAAGC 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000112971.2 ENSMUST00000239541.1 ENSMUST00000239544.1 |
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| CDS-3UTR CAA 90 bp | GCTTTCCAAATGCCCTCGTTTCCATTGCTGAAGACTTGCTGTCGCCATGTAAGAACACTGCAGTATCCTTaGGTATTCTTTGGGTTGTTC | + |
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Preference number: 5 (lower is better) Translates to: AFQMPSFPLLKTCCRHVRTLQYP*VFFGLF Trigger: GAACAACCCAAAGAATACCAAAGGATACTGCAGTGT...TCTTACATGGCGACAGCAAGTCTTCAGCAATGGAAACGAGGGCATTTGGAAAGC 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000112971.2 ENSMUST00000239541.1 ENSMUST00000239544.1 |
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| CDS-3UTR CAA 90 bp | GCTTTCCAAATGCCCTCGTTTCCATTGCTGAAGACTTGCTGTCGCCATGTAAGATCAACATACACAGGATaGATTTGGTTTATGCCCAGG | + |
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Preference number: 5 (lower is better) Translates to: AFQMPSFPLLKTCCRHVRSTYTG*IWFMPR Trigger: CCTGGGCATAAACCAAATCAATCCTGTGTATGTTGA...TCTTACATGGCGACAGCAAGTCTTCAGCAATGGAAACGAGGGCATTTGGAAAGC 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000112971.2 ENSMUST00000239541.1 ENSMUST00000239544.1 |
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| CDS-3UTR CAA 90 bp | GCTTTCCAAATGCCCTCGTTTCCATTGCTGAAGACTTGCTGTCGCCATGTAAGATCTCCATCTGATGGATaGAATAGCAACAGTCTTTTC | + |
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Preference number: 5 (lower is better) Translates to: AFQMPSFPLLKTCCRHVRSPSDG*NSNSLF Trigger: GAAAAGACTGTTGCTATTCAATCCATCAGATGGAGA...TCTTACATGGCGACAGCAAGTCTTCAGCAATGGAAACGAGGGCATTTGGAAAGC 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000239544.1 |
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| CDS-3UTR CAA 90 bp | GCTTTCCAAATGCCCTCGTTTCCATTGCTGAAGACTTGCTGTCGCCATGTAAGAAATGAGCTCATCTCTTaGAATGCTTCAACATACACA | + |
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Preference number: 5 (lower is better) Translates to: AFQMPSFPLLKTCCRHVRNELIS*NASTYT Trigger: TGTGTATGTTGAAGCATTCAAAGAGATGAGCTCATT...TCTTACATGGCGACAGCAAGTCTTCAGCAATGGAAACGAGGGCATTTGGAAAGC 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000239544.1 |
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| CDS-3UTR CAA 90 bp | TTGAAGGATACGGTGACATCTAATGAAAGCATCAGTAAGGATGGAGATTGTGACCAAACCATTCGCCAATaGATTTCCCTTCTCCTACAC | + |
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Preference number: 5 (lower is better) Translates to: LKDTVTSNESISKDGDCDQTIRQ*ISLLLH Trigger: GTGTAGGAGAAGGGAAATCAATTGGCGAATGGTTTG...GTCACAATCTCCATCCTTACTGATGCTTTCATTAGATGTCACCGTATCCTTCAA 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000112971.2 ENSMUST00000239541.1 |
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| CDS-3UTR CAA 90 bp | AAGGATACGGTGACATCTAATGAAAGCATCAGTAAGGATGGAGATTGTGACCTATCAACATACACAGGATaGATTTGGTTTATGCCCAGG | + |
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Preference number: 5 (lower is better) Translates to: KDTVTSNESISKDGDCDLSTYTG*IWFMPR Trigger: CCTGGGCATAAACCAAATCAATCCTGTGTATGTTGA...TAGGTCACAATCTCCATCCTTACTGATGCTTTCATTAGATGTCACCGTATCCTT 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000112971.2 ENSMUST00000239541.1 ENSMUST00000239544.1 |
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| CDS-3UTR CAA 90 bp | ACGGTGACATCTAATGAAAGCATCAGTAAGGATGGAGATTGTGACCTATCAAACAATAATAGGCGTTATTaGGCTTTCCTCCTAAAGCCC | + |
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Preference number: 5 (lower is better) Translates to: TVTSNESISKDGDCDLSNNNRRY*AFLLKP Trigger: GGGCTTTAGGAGGAAAGCCAAATAACGCCTATTATT...GTTTGATAGGTCACAATCTCCATCCTTACTGATGCTTTCATTAGATGTCACCGT 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000112971.2 ENSMUST00000239541.1 |
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| CDS-3UTR CAA 90 bp | TTGAAGGATACGGTGACATCTAATGAAAGCATCAGTAAGGATGGAGATTGTGACAATAATAGGCGTTATTaGGCTTTCCTCCTAAAGCCC | + |
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Preference number: 5 (lower is better) Translates to: LKDTVTSNESISKDGDCDNNRRY*AFLLKP Trigger: GGGCTTTAGGAGGAAAGCCAAATAACGCCTATTATT...GTCACAATCTCCATCCTTACTGATGCTTTCATTAGATGTCACCGTATCCTTCAA 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000112971.2 ENSMUST00000239541.1 |
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| CDS-3UTR CAA 90 bp | GAATTTCCTTCTGAACAAGGCTACACCAATTATCAAAGTCTTTCTCTTCTTTGCATACACAGGATTGATTaGGTTTATGCCCAGGCGAAG | + |
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Preference number: 5 (lower is better) Translates to: EFPSEQGYTNYQSLSLLCIHRID*VYAQAK Trigger: CTTCGCCTGGGCATAAACCAAATCAATCCTGTGTAT...GCAAAGAAGAGAAAGACTTTGATAATTGGTGTAGCCTTGTTCAGAAGGAAATTC 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000239544.1 |
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| CDS-3UTR CAA 90 bp | TTTGTTTTGCTTCTGAACAAGGGACAACTGGCTCAGTCATCATTGTTATTGAGTTCAACATACACAGGATaGATTTGGTTTATGCCCAGG | + |
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Preference number: 5 (lower is better) Translates to: FVLLLNKGQLAQSSLLLSSTYTG*IWFMPR Trigger: CCTGGGCATAAACCAAATCAATCCTGTGTATGTTGA...ACTCAATAACAATGATGACTGAGCCAGTTGTCCCTTGTTCAGAAGCAAAACAAA 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000112971.2 ENSMUST00000239541.1 ENSMUST00000239544.1 |
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| CDS-3UTR CAA 90 bp | ACGGTGACATCTAATGAAAGCATCAGTAAGGATGGAGATTGTGACCTATCAAACACACAGCACATTTTCTaGATATCTTCAATGACCACT | + |
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Preference number: 5 (lower is better) Translates to: TVTSNESISKDGDCDLSNTQHIF*ISSMTT Trigger: AGTGGTCATTGAAGATATCAAGAAAATGTGCTGTGT...GTTTGATAGGTCACAATCTCCATCCTTACTGATGCTTTCATTAGATGTCACCGT 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000112971.2 ENSMUST00000239541.1 |
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| CDS-3UTR CAA 90 bp | GTTTTTGTTTTGCTTCTGAACAAGGGACAACTGGCTCAGTCATCATTGTTATTGACACAGCACATTTTCTaGATATCTTCAATGACCACT | + |
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Preference number: 5 (lower is better) Translates to: VFVLLLNKGQLAQSSLLLTQHIF*ISSMTT Trigger: AGTGGTCATTGAAGATATCAAGAAAATGTGCTGTGT...CAATAACAATGATGACTGAGCCAGTTGTCCCTTGTTCAGAAGCAAAACAAAAAC 38% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 2 transcripts: ENSMUST00000112971.2 ENSMUST00000239541.1 |
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| CDS CCA 72 bp | CACAGAAGGATCCAAGTTCAGGATACTCATCCGCTGTaGAGACTGCAGGCAATGAAAAGTCTGGTCGTCTAC | + |
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Preference number: 6 (lower is better) Translates to: HRRIQVQDTHPL*RLQAMKSLVVY Trigger: GTAGACGACCAGACTTTTCATTGCCTGCAGTCTCCACAGCGGATGAGTATCCTGAACTTGGATCCTTCTGTG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000112971.2 ENSMUST00000239541.1 |
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| CDS CCA 72 bp | CACTCTTTGAATGCTTCAACATACACAGGATTGATTTaGTTTATGCCCAGGCGAAGGGGCACAATGAGCAGC | + |
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Preference number: 6 (lower is better) Translates to: HSLNASTYTGLI*FMPRRRGTMSS Trigger: GCTGCTCATTGTGCCCCTTCGCCTGGGCATAAACCAAATCAATCCTGTGTATGTTGAAGCATTCAAAGAGTG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000112971.2 ENSMUST00000239541.1 |
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| CDS CAA 90 bp | TGTGGCATCTTAAAACACTCTTTGAATGCTTCAACATACACAGGATaGATTTGGTTTATGCCCAGGCGAAGGGGCACAATGAGCAGCAGG | + |
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Preference number: 6 (lower is better) Translates to: CGILKHSLNASTYTG*IWFMPRRRGTMSSR Trigger: CCTGCTGCTCATTGTGCCCCTTCGCCTGGGCATAAACCAAATCAATCCTGTGTATGTTGAAGCATTCAAAGAGTGTTTTAAGATGCCACA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000112971.2 ENSMUST00000239541.1 |
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| CDS CCA 72 bp | ATCTCTTTGAATGCTTCAACATACACAGGATTGATTTaGTTTATGCCCAGGCGAAGGGGCACAATGAGCAGC | + |
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Preference number: 6 (lower is better) Translates to: ISLNASTYTGLI*FMPRRRGTMSS Trigger: GCTGCTCATTGTGCCCCTTCGCCTGGGCATAAACCAAATCAATCCTGTGTATGTTGAAGCATTCAAAGAGAT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000239544.1 |
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| CDS CAA 72 bp | ACACTCTTTGAATGCTTCAACATACACAGGATTGATTaGGTTTATGCCCAGGCGAAGGGGCACAATGAGCAG | + |
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Preference number: 6 (lower is better) Translates to: TLFECFNIHRID*VYAQAKGHNEQ Trigger: CTGCTCATTGTGCCCCTTCGCCTGGGCATAAACCAAATCAATCCTGTGTATGTTGAAGCATTCAAAGAGTGT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000112971.2 ENSMUST00000239541.1 |
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| CDS CAA 72 bp | CATCTCTTTGAATGCTTCAACATACACAGGATTGATTaGGTTTATGCCCAGGCGAAGGGGCACAATGAGCAG | + |
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Preference number: 6 (lower is better) Translates to: HLFECFNIHRID*VYAQAKGHNEQ Trigger: CTGCTCATTGTGCCCCTTCGCCTGGGCATAAACCAAATCAATCCTGTGTATGTTGAAGCATTCAAAGAGATG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000239544.1 |
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| CDS CAA 72 bp | GAGCTCATCTCTTTGAATGCTTCAACATACACAGGATaGATTTGGTTTATGCCCAGGCGAAGGGGCACAATG | + |
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Preference number: 6 (lower is better) Translates to: ELISLNASTYTG*IWFMPRRRGTM Trigger: CATTGTGCCCCTTCGCCTGGGCATAAACCAAATCAATCCTGTGTATGTTGAAGCATTCAAAGAGATGAGCTC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000239544.1 |
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| CDS CAA 72 bp | TTAAAACACTCTTTGAATGCTTCAACATACACAGGATaGATTTGGTTTATGCCCAGGCGAAGGGGCACAATG | + |
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Preference number: 6 (lower is better) Translates to: LKHSLNASTYTG*IWFMPRRRGTM Trigger: CATTGTGCCCCTTCGCCTGGGCATAAACCAAATCAATCCTGTGTATGTTGAAGCATTCAAAGAGTGTTTTAA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000112971.2 ENSMUST00000239541.1 |
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