Pregenerated sensors for ATG3 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000022663Ensembl transcript IDs: ENSMUST00000023343.4
Found 31 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR CCA 90 bp | AACATGAACTACAAGCACAGAGCAGATGTAGGGAGAGGACAAGGCTaGGAATGGAGTAGGGAGAGACACACAGGCTGGCATGGAACACTT | + |
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Preference number: 1 (lower is better) Translates to: NMNYKHRADVGRGQG*EWSRERHTGWHGTL Trigger: AAGTGTTCCATGCCAGCCTGTGTGTCTCTCCCTACTCCATTCCCAGCCTTGTCCTCTCCCTACATCTGCTCTGTGCTTGTAGTTCATGTT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000023343.4 |
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| 3UTR TCA 90 bp | TTAGATGATGTAAACAAAATGGAAGACAAGGGAAGATATCACACTTaGCACAGACTAATATGGAGACTGAGAGGCATAACAGGGATTTTA | + |
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Preference number: 1 (lower is better) Translates to: LDDVNKMEDKGRYHT*HRLIWRLRGITGIL Trigger: TAAAATCCCTGTTATGCCTCTCAGTCTCCATATTAGTCTGTGTCAAGTGTGATATCTTCCCTTGTCTTCCATTTTGTTTACATCATCTAA 37% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000023343.4 |
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| 3UTR-3UTR CCA 90 bp | TTGACACAGACTAATATGGAGACTGAGAGGCATAACAGGGATTTTAGGCAAAGGGGGAGAGGACAAGGCTaGGAATGGAGTAGGGAGAGA | + |
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Preference number: 2 (lower is better) Translates to: LTQTNMETERHNRDFRQRGRGQG*EWSRER Trigger: TCTCTCCCTACTCCATTCCCAGCCTTGTCCTCTCCC...CCTTTGCCTAAAATCCCTGTTATGCCTCTCAGTCTCCATATTAGTCTGTGTCAA 48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000023343.4 |
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| 3UTR-3UTR CCA 90 bp | TTGACACAGACTAATATGGAGACTGAGAGGCATAACAGGGATTTTAGGCAAAGGGGACAAGGCTGGGAATaGAGTAGGGAGAGACACACA | + |
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Preference number: 2 (lower is better) Translates to: LTQTNMETERHNRDFRQRGQGWE*SRERHT Trigger: TGTGTGTCTCTCCCTACTCCATTCCCAGCCTTGTCC...CCTTTGCCTAAAATCCCTGTTATGCCTCTCAGTCTCCATATTAGTCTGTGTCAA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000023343.4 |
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| 3UTR-3UTR TCA 90 bp | TTGACACAGACTAATATGGAGACTGAGAGGCATAACAGGGATTTTAGGCAAAGGCCTTCTGACAGGAAATaGAAACATCTCTTCACAAAC | + |
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Preference number: 2 (lower is better) Translates to: LTQTNMETERHNRDFRQRPSDRK*KHLFTN Trigger: GTTTGTGAAGAGATGTTTTCATTTCCTGTCAGAAGG...CCTTTGCCTAAAATCCCTGTTATGCCTCTCAGTCTCCATATTAGTCTGTGTCAA 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000023343.4 |
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| 3UTR-3UTR TCA 90 bp | TTGACACAGACTAATATGGAGACTGAGAGGCATAACAGGGATTTTAGGCAAAGGCCATTTTCAGATCTATaGACTGACACAATACAAGCA | + |
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Preference number: 2 (lower is better) Translates to: LTQTNMETERHNRDFRQRPFSDL*TDTIQA Trigger: TGCTTGTATTGTGTCAGTTCATAGATCTGAAAATGG...CCTTTGCCTAAAATCCCTGTTATGCCTCTCAGTCTCCATATTAGTCTGTGTCAA 40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000023343.4 |
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| 3UTR-3UTR TCA 90 bp | TATGAACTGACACAATACAAGCAAAGATTCCCCTTCAAGTCCCACTATTCTACTCCTACTAGAACCTTCTaGCAGGAAATGAAAACATCT | + |
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Preference number: 2 (lower is better) Translates to: YELTQYKQRFPFKSHYSTPTRTF*QEMKTS Trigger: AGATGTTTTCATTTCCTGTCAGAAGGTTCTAGTAGG...AGTAGAATAGTGGGACTTGAAGGGGAATCTTTGCTTGTATTGTGTCAGTTCATA 39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000023343.4 |
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| 3UTR-3UTR TCA 90 bp | AGAGGGATATTCTTAGATGATGTAAACAAAATGGAAGACAAGGGAAGATATCACAGCACTTCAGAAACATaGACTACAAGCACAGAGCAG | + |
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Preference number: 2 (lower is better) Translates to: RGIFLDDVNKMEDKGRYHSTSET*TTSTEQ Trigger: CTGCTCTGTGCTTGTAGTTCATGTTTCTGAAGTGCT...GTGATATCTTCCCTTGTCTTCCATTTTGTTTACATCATCTAAGAATATCCCTCT 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000023343.4 |
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| 3UTR CCA 72 bp | CAAGGCTGGGAATGGAGTAGGGAGAGACACACAGGCTaGCATGGAACACTTTCTAGAGCTAGTTCTGACACT | + |
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Preference number: 3 (lower is better) Translates to: QGWEWSRERHTG*HGTLSRASSDT Trigger: AGTGTCAGAACTAGCTCTAGAAAGTGTTCCATGCCAGCCTGTGTGTCTCTCCCTACTCCATTCCCAGCCTTG 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000023343.4 |
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| 3UTR TCA 72 bp | GCTAGTTCTGACACTGGTAGATGTTCAATAGCACCCTaGCTCTGCAATCATCGTCTGACAGGGGAAACCCTA | + |
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Preference number: 3 (lower is better) Translates to: ASSDTGRCSIAP*LCNHRLTGETL Trigger: TAGGGTTTCCCCTGTCAGACGATGATTGCAGAGTCAGGGTGCTATTGAACATCTACCAGTGTCAGAACTAGC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000023343.4 |
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| 3UTR TCA 72 bp | GTAAACAAAATGGAAGACAAGGGAAGATATCACACTTaGCACAGACTAATATGGAGACTGAGAGGCATAACA | + |
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Preference number: 3 (lower is better) Translates to: VNKMEDKGRYHT*HRLIWRLRGIT Trigger: TGTTATGCCTCTCAGTCTCCATATTAGTCTGTGTCAAGTGTGATATCTTCCCTTGTCTTCCATTTTGTTTAC 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000023343.4 |
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| CDS-3UTR CCA 90 bp | TTCAGAAACATGAACTACAAGCACAGAGCAGATGTAGGGAGAGGACAAGGCTGGACACATAGGAGGTGGTaGGAGATGAGGATGGTTTTC | + |
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Preference number: 4 (lower is better) Translates to: FRNMNYKHRADVGRGQGWTHRRW*EMRMVF Trigger: GAAAACCATCCTCATCTCCCACCACCTCCTATGTGT...CCAGCCTTGTCCTCTCCCTACATCTGCTCTGTGCTTGTAGTTCATGTTTCTGAA 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000023343.4 |
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| CDS-3UTR TCA 90 bp | TTGACACAGACTAATATGGAGACTGAGAGGCATAACAGGGATTTTAGGCAAAGGGCATGCCTGCATGGGTaGACTGAACACATAGGAGGT | + |
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Preference number: 4 (lower is better) Translates to: LTQTNMETERHNRDFRQRACLHG*TEHIGG Trigger: ACCTCCTATGTGTTCAGTTCACCCATGCAGGCATGC...CCTTTGCCTAAAATCCCTGTTATGCCTCTCAGTCTCCATATTAGTCTGTGTCAA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000023343.4 |
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| CDS-3UTR TCA 90 bp | TTCAGAAACATGAACTACAAGCACAGAGCAGATGTAGGGAGAGGACAAGGCTGGTCACATGATCTTGACTaGTGTCTTCATACATGTGCT | + |
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Preference number: 4 (lower is better) Translates to: FRNMNYKHRADVGRGQGWSHDLD*CLHTCA Trigger: AGCACATGTATGAAGACATCAGTCAAGATCATGTGA...CCAGCCTTGTCCTCTCCCTACATCTGCTCTGTGCTTGTAGTTCATGTTTCTGAA 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000023343.4 |
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| CDS-3UTR GCA 90 bp | TTCAGAAACATGAACTACAAGCACAGAGCAGATGTAGGGAGAGGACAAGGCTGGATGTCTTCATACATGTaGTCAACTGTTAAAGGCTGC | + |
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Preference number: 4 (lower is better) Translates to: FRNMNYKHRADVGRGQGWMSSYM*STVKGC Trigger: GCAGCCTTTAACAGTTGAGCACATGTATGAAGACAT...CCAGCCTTGTCCTCTCCCTACATCTGCTCTGTGCTTGTAGTTCATGTTTCTGAA 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000023343.4 |
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| CDS-3UTR CCA 90 bp | TTGACACAGACTAATATGGAGACTGAGAGGCATAACAGGGATTTTAGGCAAAGGTGCCACAAACTCTTCTaGGGTGATTACACCCGTTTC | + |
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Preference number: 4 (lower is better) Translates to: LTQTNMETERHNRDFRQRCHKLF*GDYTRF Trigger: GAAACGGGTGTAATCACCCCAGAAGAGTTTGTGGCA...CCTTTGCCTAAAATCCCTGTTATGCCTCTCAGTCTCCATATTAGTCTGTGTCAA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000023343.4 |
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| CDS-3UTR TCA 90 bp | AGATTCCCCTTCAAGTCCCACTATTCTACTGACAATCATGTTAAGAAAAACATCGGAGGTGGTGGGAGATaGGGATGGTTTTCAATGGTC | + |
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Preference number: 4 (lower is better) Translates to: RFPFKSHYSTDNHVKKNIGGGGR*GWFSMV Trigger: GACCATTGAAAACCATCCTCATCTCCCACCACCTCC...GATGTTTTTCTTAACATGATTGTCAGTAGAATAGTGGGACTTGAAGGGGAATCT 43% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000023343.4 |
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| CDS-3UTR TCA 90 bp | AGAGGGATATTCTTAGATGATGTAAACAAAATGGAAGACAAGGGAAGATATCACCCTGCATGGGTGAACTaGACACATAGGAGGTGGTGG | + |
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Preference number: 4 (lower is better) Translates to: RGIFLDDVNKMEDKGRYHPAWVN*THRRWW Trigger: CCACCACCTCCTATGTGTTCAGTTCACCCATGCAGG...GTGATATCTTCCCTTGTCTTCCATTTTGTTTACATCATCTAAGAATATCCCTCT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000023343.4 |
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| CDS-3UTR GCA 90 bp | AGAGGGATATTCTTAGATGATGTAAACAAAATGGAAGACAAGGGAAGATATCACTCCCCTGTAGCCCATTaGCATGTTGGACAGTGGTGG | + |
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Preference number: 4 (lower is better) Translates to: RGIFLDDVNKMEDKGRYHSPVAH*HVGQWW Trigger: CCACCACTGTCCAACATGGCAATGGGCTACAGGGGA...GTGATATCTTCCCTTGTCTTCCATTTTGTTTACATCATCTAAGAATATCCCTCT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000023343.4 |
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| CDS-3UTR TCA 90 bp | AGAGGGATATTCTTAGATGATGTAAACAAAATGGAAGACAAGGGAAGATATCACCAGTGGTGGACTAAGTaGTCTCCAGCTGCCACAAAC | + |
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Preference number: 4 (lower is better) Translates to: RGIFLDDVNKMEDKGRYHQWWTK*SPAATN Trigger: GTTTGTGGCAGCTGGAGATCACTTAGTCCACCACTG...GTGATATCTTCCCTTGTCTTCCATTTTGTTTACATCATCTAAGAATATCCCTCT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000023343.4 |
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| CDS-3UTR TCA 90 bp | AGATTCCCCTTCAAGTCCCACTATTCTACTGACAATCATGTTAAGAAAAACATCCGTTTCCTTAAATTTTaGTTCCTTGAGGACCGGGGT | + |
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Preference number: 4 (lower is better) Translates to: RFPFKSHYSTDNHVKKNIRFLKF*FLEDRG Trigger: ACCCCGGTCCTCAAGGAATCAAAATTTAAGGAAACG...GATGTTTTTCTTAACATGATTGTCAGTAGAATAGTGGGACTTGAAGGGGAATCT 40% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt. Matches the following 1 transcripts: ENSMUST00000023343.4 |
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| CDS-3UTR TCA 90 bp | TATGAACTGACACAATACAAGCAAAGATTCCCCTTCAAGTCCCACTATTCTACTGTAATACCTGTGTTGTaGTATGTATCTACCCATCCC | + |
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Preference number: 4 (lower is better) Translates to: YELTQYKQRFPFKSHYSTVIPVL*YVSTHP Trigger: GGGATGGGTAGATACATATCACAACACAGGTATTAC...AGTAGAATAGTGGGACTTGAAGGGGAATCTTTGCTTGTATTGTGTCAGTTCATA 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000023343.4 |
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| CDS-3UTR GCA 90 bp | TATGAACTGACACAATACAAGCAAAGATTCCCCTTCAAGTCCCACTATTCTACTATATTCTTCCATGTCTaGAGCTTCCCCTTCATCTTC | + |
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Preference number: 4 (lower is better) Translates to: YELTQYKQRFPFKSHYSTIFFHV*SFPFIF Trigger: GAAGATGAAGGGGAAGCTGCAGACATGGAAGAATAT...AGTAGAATAGTGGGACTTGAAGGGGAATCTTTGCTTGTATTGTGTCAGTTCATA 40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000023343.4 |
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| CDS-3UTR GCA 90 bp | AGAGGGATATTCTTAGATGATGTAAACAAAATGGAAGACAAGGGAAGATATCACCTCTCCCCCGCCTTCTaGAACTGTCTCAATAATTTT | + |
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Preference number: 4 (lower is better) Translates to: RGIFLDDVNKMEDKGRYHLSPAF*NCLNNF Trigger: AAAATTATTGAGACAGTTGCAGAAGGCGGGGGAGAG...GTGATATCTTCCCTTGTCTTCCATTTTGTTTACATCATCTAAGAATATCCCTCT 39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000023343.4 |
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| CDS-3UTR CCA 90 bp | AGATTCCCCTTCAAGTCCCACTATTCTACTGACAATCATGTTAAGAAAAACATCAGTGCTGAGCAATCTTaGAGTTTTATACTGTCCTTG | + |
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Preference number: 4 (lower is better) Translates to: RFPFKSHYSTDNHVKKNISAEQS*SFILSL Trigger: CAAGGACAGTATAAAACTCCAAGATTGCTCAGCACT...GATGTTTTTCTTAACATGATTGTCAGTAGAATAGTGGGACTTGAAGGGGAATCT 38% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000023343.4 |
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| CDS-3UTR GCA 90 bp | AGAGGGATATTCTTAGATGATGTAAACAAAATGGAAGACAAGGGAAGATATCACGTCTGTCGGAAGATATaGCTTCACTTTCAATTCTTC | + |
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Preference number: 4 (lower is better) Translates to: RGIFLDDVNKMEDKGRYHVCRKI*LHFQFF Trigger: GAAGAATTGAAAGTGAAGGCATATCTTCCGACAGAC...GTGATATCTTCCCTTGTCTTCCATTTTGTTTACATCATCTAAGAATATCCCTCT 37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000023343.4 |
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| CDS-3UTR CAA 90 bp | TTCAGAAACATGAACTACAAGCACAGAGCAGATGTAGGGAGAGGACAAGGCTGGTTCCCCTGTAGCCCATaGCCATGTTGGACAGTGGTG | + |
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Preference number: 5 (lower is better) Translates to: FRNMNYKHRADVGRGQGWFPCSP*PCWTVV Trigger: CACCACTGTCCAACATGGCAATGGGCTACAGGGGAA...CCAGCCTTGTCCTCTCCCTACATCTGCTCTGTGCTTGTAGTTCATGTTTCTGAA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000023343.4 |
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| CDS-3UTR CAA 90 bp | TTGACACAGACTAATATGGAGACTGAGAGGCATAACAGGGATTTTAGGCAAAGGTTAAATTTTGATTCCTaGAGGACCGGGGTCAGGTAC | + |
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Preference number: 5 (lower is better) Translates to: LTQTNMETERHNRDFRQRLNFDS*RTGVRY Trigger: GTACCTGACCCCGGTCCTCAAGGAATCAAAATTTAA...CCTTTGCCTAAAATCCCTGTTATGCCTCTCAGTCTCCATATTAGTCTGTGTCAA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000023343.4 |
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| CDS TCA 72 bp | CCCTTCATCTTCCTCGTCTTCTTCATCACACAGTGCTaGGCAATCTTGGAGTTTTATACTGTCCTTGCTTTC | + |
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Preference number: 6 (lower is better) Translates to: PFIFLVFFITQC*AILEFYTVLAF Trigger: GAAAGCAAGGACAGTATAAAACTCCAAGATTGCTCAGCACTGTGTGATGAAGAAGACGAGGAAGATGAAGGG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000023343.4 |
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| CDS CAA 90 bp | CTGTTTACACCGCTTGTAGCATGGAACATTTTTGGTTACCAAAAATaGTTTGTCTGTCGGAAGATATGCCTTCACTTTCAATTCTTCCCC | + |
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Preference number: 6 (lower is better) Translates to: LFTPLVAWNIFGYQK*FVCRKICLHFQFFP Trigger: GGGGAAGAATTGAAAGTGAAGGCATATCTTCCGACAGACAAACAATTTTTGGTAACCAAAAATGTTCCATGCTACAAGCGGTGTAAACAG 40% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000023343.4 |
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| CDS GCA 72 bp | TATACTGTCCTTGCTTTCCAGTGTAATCTCCTTAACTaGTTCAGTAATTCCTGTAATACCTGTGTTGTGATA | + |
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Preference number: 6 (lower is better) Translates to: YTVLAFQCNLLN*FSNSCNTCVVI Trigger: TATCACAACACAGGTATTACAGGAATTACTGAAGCAGTTAAGGAGATTACACTGGAAAGCAAGGACAGTATA 38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000023343.4 |
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