RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for ATG12 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000032905

Ensembl transcript IDs: ENSMUST00000035648.6

Found 81 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR TCA 90 bp GGTGCACAGCTGCAAGCCCCGGAGCCTGAGGCAGGTCAGCCTGAGTaGCACAGTCAATCTCAAAAGCAGGACAACAACAGAGTAGCATTT +
Preference number: 1 (lower is better)
Translates to: GAQLQAPEPEAGQPE*HSQSQKQDNNRVAF
Trigger: AAATGCTACTCTGTTGTTGTCCTGCTTTTGAGATTGACTGTGTCACTCAGGCTGACCTGCCTCAGGCTCCGGGGCTTGCAGCTGTGCACC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000035648.6
3UTR GCA 90 bp ACTGCAAGGCATGCTGAGGAAGGGCATGTCCACAATTCACACTCTTaGGCAGAAGACAAGTGGTCAGCACTGCACCGTGTTGTTCCACAG +
Preference number: 1 (lower is better)
Translates to: TARHAEEGHVHNSHS*AEDKWSALHRVVPQ
Trigger: CTGTGGAACAACACGGTGCAGTGCTGACCACTTGTCTTCTGCGCAAGAGTGTGAATTGTGGACATGCCCTTCCTCAGCATGCCTTGCAGT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000035648.6
3UTR CCA 90 bp GAGGAAGGGCATGTCCACAATTCACACTCTTGCGCAGAAGACAAGTaGTCAGCACTGCACCGTGTTGTTCCACAGCTTCTTCCATGGCTC +
Preference number: 1 (lower is better)
Translates to: EEGHVHNSHSCAEDK*SALHRVVPQLLPWL
Trigger: GAGCCATGGAAGAAGCTGTGGAACAACACGGTGCAGTGCTGACCACTTGTCTTCTGCGCAAGAGTGTGAATTGTGGACATGCCCTTCCTC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000035648.6
3UTR GCA 90 bp GACAGGTGTGGGGCTTTTTACCTGTGTCTTATGTACTCAGTGTGCTaGTGTGCCTCTGCAGTGACATTGAGTGTGGCATTACTCCACTTG +
Preference number: 1 (lower is better)
Translates to: DRCGAFYLCLMYSVC*CASAVTLSVALLHL
Trigger: CAAGTGGAGTAATGCCACACTCAATGTCACTGCAGAGGCACAGCAGCACACTGAGTACATAAGACACAGGTAAAAAGCCCCACACCTGTC
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000035648.6
3UTR GCA 90 bp CCTAGGACAGCAAGGCTTACTTCCCACCACCAGACCACCAAGGTCTaGTTTTACTTACTGACATTTAGAGTTGTTAACCACCCAAGGCCT +
Preference number: 1 (lower is better)
Translates to: PRTARLTSHHQTTKV*FYLLTFRVVNHPRP
Trigger: AGGCCTTGGGTGGTTAACAACTCTAAATGTCAGTAAGTAAAAGCAGACCTTGGTGGTCTGGTGGTGGGAAGTAAGCCTTGCTGTCCTAGG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000035648.6
3UTR CCA 90 bp TGGAGTTCAAAAAGTCCTGGAGGAGTGAGGGTGTTAGTGAGTCCCTaGAGAAGCCTTAAAACAAAGATCAACAGCAAACCAGGGAGCGAC +
Preference number: 1 (lower is better)
Translates to: WSSKSPGGVRVLVSP*RSLKTKINSKPGSD
Trigger: GTCGCTCCCTGGTTTGCTGTTGATCTTTGTTTTAAGGCTTCTCCAGGGACTCACTAACACCCTCACTCCTCCAGGACTTTTTGAACTCCA
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000035648.6
3UTR TCA 90 bp AGCCAAGCACTGTCCATAGAATCTGAATTCCCTGTTCTAAGTCACTaGCCTCAGATGGTTTACAGTCTAAGAGGAGGGTTCAGGCACAGC +
Preference number: 1 (lower is better)
Translates to: SQALSIESEFPVLSH*PQMVYSLRGGFRHS
Trigger: GCTGTGCCTGAACCCTCCTCTTAGACTGTAAACCATCTGAGGTCAGTGACTTAGAACAGGGAATTCAGATTCTATGGACAGTGCTTGGCT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000035648.6
3UTR CCA 90 bp TTCATGTCAACAGCTTACCCAGCATATAATACTTGGAACACGAACTaGGACCTCCCCACAAGCTACTCATTCTTATTTCCATCCTCTTAC +
Preference number: 1 (lower is better)
Translates to: FMSTAYPAYNTWNTN*DLPTSYSFLFPSSY
Trigger: GTAAGAGGATGGAAATAAGAATGAGTAGCTTGTGGGGAGGTCCCAGTTCGTGTTCCAAGTATTATATGCTGGGTAAGCTGTTGACATGAA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000035648.6
3UTR TCA 90 bp ACAAATGGAGAACATTTCAAACAGCCAAGCACTGTCCATAGAATCTaGATTCCCTGTTCTAAGTCACTGACCTCAGATGGTTTACAGTCT +
Preference number: 1 (lower is better)
Translates to: TNGEHFKQPSTVHRI*IPCSKSLTSDGLQS
Trigger: AGACTGTAAACCATCTGAGGTCAGTGACTTAGAACAGGGAATTCAGATTCTATGGACAGTGCTTGGCTGTTTGAAATGTTCTCCATTTGT
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000035648.6
3UTR CCA 90 bp CTTGGAGATACTTCCAGGTGGAGAAACATTAAGTGCAAGAATCCTTaGGATGGACACAATCTTAAATGTCTGAATTACAGCATGGCCTTT +
Preference number: 1 (lower is better)
Translates to: LGDTSRWRNIKCKNP*DGHNLKCLNYSMAF
Trigger: AAAGGCCATGCTGTAATTCAGACATTTAAGATTGTGTCCATCCCAAGGATTCTTGCACTTAATGTTTCTCCACCTGGAAGTATCTCCAAG
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000035648.6
3UTR GCA 90 bp GAAGAGCTGAGACTCATCTGCTCACAATTTGTAAAACTGTGTCCCTaGATGATTAATTTTAAACTATGCACATCCTCCAGTGTGTCAACA +
Preference number: 1 (lower is better)
Translates to: EELRLICSQFVKLCP*MINFKLCTSSSVST
Trigger: TGTTGACACACTGGAGGATGTGCATAGTTTAAAATTAATCATGCAGGGACACAGTTTTACAAATTGTGAGCAGATGAGTCTCAGCTCTTC
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000035648.6
3UTR GCA 90 bp AGGTGCATTTGTCTTGGAGATACTTCCAGGTGGAGAAACATTAAGTaGAAGAATCCTTGGGATGGACACAATCTTAAATGTCTGAATTAC +
Preference number: 1 (lower is better)
Translates to: RCICLGDTSRWRNIK*KNPWDGHNLKCLNY
Trigger: GTAATTCAGACATTTAAGATTGTGTCCATCCCAAGGATTCTTGCACTTAATGTTTCTCCACCTGGAAGTATCTCCAAGACAAATGCACCT
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000035648.6
3UTR-3UTR TCA 90 bp AAAGGAGCCAGATGCAGTGGTGCACAGCTGCAAGCCCCGGAGCCTGAGGCAGGTCATAGACAGACACACTaGTCTCTGCAAGTTCCAGGC +
Preference number: 2 (lower is better)
Translates to: KGARCSGAQLQAPEPEAGHRQTH*SLQVPG
Trigger: GCCTGGAACTTGCAGAGATCAGTGTGTCTGTCTATG...ACCTGCCTCAGGCTCCGGGGCTTGCAGCTGTGCACCACTGCATCTGGCTCCTTT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000035648.6
3UTR-3UTR TCA 90 bp TGCAAGCCCCGGAGCCTGAGGCAGGTCAGCCTGAGTGACACAGTCAATCTCAAATGCTGTGGGGCTGAGTaGGGTGGGCTATCCCTTCAT +
Preference number: 2 (lower is better)
Translates to: CKPRSLRQVSLSDTVNLKCCGAE*GGLSLH
Trigger: ATGAAGGGATAGCCCACCTCACTCAGCCCCACAGCA...TTTGAGATTGACTGTGTCACTCAGGCTGACCTGCCTCAGGCTCCGGGGCTTGCA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000035648.6
3UTR-3UTR GCA 90 bp CATGGCAGCATGAGGCTAGGTGCTGTCACAGTGCTGGCTTTCTCTAAGTGTTCTAGCCAGATGCAGTGGTaGACAGCTGCAAGCCCCGGA +
Preference number: 2 (lower is better)
Translates to: HGSMRLGAVTVLAFSKCSSQMQW*TAASPG
Trigger: TCCGGGGCTTGCAGCTGTGCACCACTGCATCTGGCT...AGAACACTTAGAGAAAGCCAGCACTGTGACAGCACCTAGCCTCATGCTGCCATG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000035648.6
3UTR-3UTR TCA 90 bp CATGGCAGCATGAGGCTAGGTGCTGTCACAGTGCTGGCTTTCTCTAAGTGTTCTGCCTGGTCTACAAGGTaGGTTCTAGGACAGCCAGGG +
Preference number: 2 (lower is better)
Translates to: HGSMRLGAVTVLAFSKCSAWSTR*VLGQPG
Trigger: CCCTGGCTGTCCTAGAACTCACCTTGTAGACCAGGC...AGAACACTTAGAGAAAGCCAGCACTGTGACAGCACCTAGCCTCATGCTGCCATG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000035648.6
3UTR-3UTR CCA 90 bp TGCAAGCCCCGGAGCCTGAGGCAGGTCAGCCTGAGTGACACAGTCAATCTCAAACTTTCTAACGTGACCTaGAACAGGAGTGTGTGGGAG +
Preference number: 2 (lower is better)
Translates to: CKPRSLRQVSLSDTVNLKLSNVT*NRSVWE
Trigger: CTCCCACACACTCCTGTTCCAGGTCACGTTAGAAAG...TTTGAGATTGACTGTGTCACTCAGGCTGACCTGCCTCAGGCTCCGGGGCTTGCA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000035648.6
3UTR-3UTR CCA 90 bp TGCAAGCCCCGGAGCCTGAGGCAGGTCAGCCTGAGTGACACAGTCAATCTCAAACTAGTTGTGGACTCCTaGTTCACTCTTCCTGCTCAG +
Preference number: 2 (lower is better)
Translates to: CKPRSLRQVSLSDTVNLKLVVDS*FTLPAQ
Trigger: CTGAGCAGGAAGAGTGAACCAGGAGTCCACAACTAG...TTTGAGATTGACTGTGTCACTCAGGCTGACCTGCCTCAGGCTCCGGGGCTTGCA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000035648.6
3UTR-3UTR GCA 90 bp CATGGCAGCATGAGGCTAGGTGCTGTCACAGTGCTGGCTTTCTCTAAGTGTTCTAGCCACTGTCCACAGTaGTCTGTGACTATTCCCTGC +
Preference number: 2 (lower is better)
Translates to: HGSMRLGAVTVLAFSKCSSHCPQ*SVTIPC
Trigger: GCAGGGAATAGTCACAGAGCACTGTGGACAGTGGCT...AGAACACTTAGAGAAAGCCAGCACTGTGACAGCACCTAGCCTCATGCTGCCATG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000035648.6
3UTR-3UTR TCA 90 bp CATGGCAGCATGAGGCTAGGTGCTGTCACAGTGCTGGCTTTCTCTAAGTGTTCTTGCCTTCAGTCATCCTaGGACCTGCAATCCACATAC +
Preference number: 2 (lower is better)
Translates to: HGSMRLGAVTVLAFSKCSCLQSS*DLQSTY
Trigger: GTATGTGGATTGCAGGTCTCAGGATGACTGAAGGCA...AGAACACTTAGAGAAAGCCAGCACTGTGACAGCACCTAGCCTCATGCTGCCATG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000035648.6
3UTR-3UTR TCA 90 bp CATGGCAGCATGAGGCTAGGTGCTGTCACAGTGCTGGCTTTCTCTAAGTGTTCTTCACAATGCCCAGGATaGGGCGCAAGAACCAGAAAT +
Preference number: 2 (lower is better)
Translates to: HGSMRLGAVTVLAFSKCSSQCPG*GARTRN
Trigger: ATTTCTGGTTCTTGCGCCTCATCCTGGGCATTGTGA...AGAACACTTAGAGAAAGCCAGCACTGTGACAGCACCTAGCCTCATGCTGCCATG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000035648.6
3UTR-3UTR GCA 90 bp CATGGCAGCATGAGGCTAGGTGCTGTCACAGTGCTGGCTTTCTCTAAGTGTTCTCCTAAGGCTGTACTGTaGATAAGCCACTGTCCACAG +
Preference number: 2 (lower is better)
Translates to: HGSMRLGAVTVLAFSKCSPKAVL*ISHCPQ
Trigger: CTGTGGACAGTGGCTTATGCACAGTACAGCCTTAGG...AGAACACTTAGAGAAAGCCAGCACTGTGACAGCACCTAGCCTCATGCTGCCATG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000035648.6
3UTR-3UTR CCA 90 bp CCTGGAGGAGTGAGGGTGTTAGTGAGTCCCTGGAGAAGCCTTAAAACAAAGATCTGCGCAGAAGACAAGTaGTCAGCACTGCACCGTGTT +
Preference number: 2 (lower is better)
Translates to: PGGVRVLVSPWRSLKTKICAEDK*SALHRV
Trigger: AACACGGTGCAGTGCTGACCACTTGTCTTCTGCGCA...GATCTTTGTTTTAAGGCTTCTCCAGGGACTCACTAACACCCTCACTCCTCCAGG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000035648.6
3UTR CAA 90 bp GTGCAGCTTGAGCAGGGAGGAGCACAGGTGTCAGGTGCATTTGTCTaGGAGATACTTCCAGGTGGAGAAACATTAAGTGCAAGAATCCTT +
Preference number: 2 (lower is better)
Translates to: VQLEQGGAQVSGAFV*EILPGGETLSARIL
Trigger: AAGGATTCTTGCACTTAATGTTTCTCCACCTGGAAGTATCTCCAAGACAAATGCACCTGACACCTGTGCTCCTCCCTGCTCAAGCTGCAC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000035648.6
3UTR-3UTR TCA 90 bp CATGGCAGCATGAGGCTAGGTGCTGTCACAGTGCTGGCTTTCTCTAAGTGTTCTCACCTGGCAAAGCCATaGAAACTGTCAAGCCTTTTT +
Preference number: 2 (lower is better)
Translates to: HGSMRLGAVTVLAFSKCSHLAKP*KLSSLF
Trigger: AAAAAGGCTTGACAGTTTTCATGGCTTTGCCAGGTG...AGAACACTTAGAGAAAGCCAGCACTGTGACAGCACCTAGCCTCATGCTGCCATG
49% GC, longest homopolymer 5 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000035648.6
3UTR-3UTR GCA 90 bp CCTGGAGGAGTGAGGGTGTTAGTGAGTCCCTGGAGAAGCCTTAAAACAAAGATCTTTTTGCCAACTGGCTaGCCTCTACCGGACAACTTA +
Preference number: 2 (lower is better)
Translates to: PGGVRVLVSPWRSLKTKIFLPTG*PLPDNL
Trigger: TAAGTTGTCCGGTAGAGGGCAGCCAGTTGGCAAAAA...GATCTTTGTTTTAAGGCTTCTCCAGGGACTCACTAACACCCTCACTCCTCCAGG
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000035648.6
3UTR-3UTR CCA 90 bp CATGGCAGCATGAGGCTAGGTGCTGTCACAGTGCTGGCTTTCTCTAAGTGTTCTGAGTTCAAAAAGTCCTaGAGGAGTGAGGGTGTTAGT +
Preference number: 2 (lower is better)
Translates to: HGSMRLGAVTVLAFSKCSEFKKS*RSEGVS
Trigger: ACTAACACCCTCACTCCTCCAGGACTTTTTGAACTC...AGAACACTTAGAGAAAGCCAGCACTGTGACAGCACCTAGCCTCATGCTGCCATG
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000035648.6
3UTR CAA 90 bp TGCTGCTGTGCCTCTGCAGTGACATTGAGTGTGGCATTACTCCACTaGTACACATGGAACACTGAAAATAAACTGAAGGCTCCCTTCCCT +
Preference number: 2 (lower is better)
Translates to: CCCASAVTLSVALLH*YTWNTENKLKAPFP
Trigger: AGGGAAGGGAGCCTTCAGTTTATTTTCAGTGTTCCATGTGTACAAGTGGAGTAATGCCACACTCAATGTCACTGCAGAGGCACAGCAGCA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000035648.6
3UTR-3UTR TCA 90 bp AGTTCAAAAAGTCCTGGAGGAGTGAGGGTGTTAGTGAGTCCCTGGAGAAGCCTTACACTGAAAATAAACTaGAGGCTCCCTTCCCTTCCT +
Preference number: 2 (lower is better)
Translates to: SSKSPGGVRVLVSPWRSLTLKIN*RLPSLP
Trigger: AGGAAGGGAAGGGAGCCTTCAGTTTATTTTCAGTGT...AAGGCTTCTCCAGGGACTCACTAACACCCTCACTCCTCCAGGACTTTTTGAACT
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000035648.6
3UTR-3UTR GCA 90 bp CATGGCAGCATGAGGCTAGGTGCTGTCACAGTGCTGGCTTTCTCTAAGTGTTCTGTGTGTCAACACAGCTaGTTTCCGGATTACACATTA +
Preference number: 2 (lower is better)
Translates to: HGSMRLGAVTVLAFSKCSVCQHS*FPDYTL
Trigger: TAATGTGTAATCCGGAAAGCAGCTGTGTTGACACAC...AGAACACTTAGAGAAAGCCAGCACTGTGACAGCACCTAGCCTCATGCTGCCATG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000035648.6
3UTR-3UTR GCA 90 bp AGTTCAAAAAGTCCTGGAGGAGTGAGGGTGTTAGTGAGTCCCTGGAGAAGCCTTGAGTGCTGCCATGTGTaGTTCTGGTTGGAATTTAAG +
Preference number: 2 (lower is better)
Translates to: SSKSPGGVRVLVSPWRSLECCHV*FWLEFK
Trigger: CTTAAATTCCAACCAGAAGCACACATGGCAGCACTC...AAGGCTTCTCCAGGGACTCACTAACACCCTCACTCCTCCAGGACTTTTTGAACT
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000035648.6
3UTR-3UTR CCA 90 bp AGTTCAAAAAGTCCTGGAGGAGTGAGGGTGTTAGTGAGTCCCTGGAGAAGCCTTTTCATCTCAGCACTTTaGAGGCATAGACAGACACAC +
Preference number: 2 (lower is better)
Translates to: SSKSPGGVRVLVSPWRSLFISAL*RHRQTH
Trigger: GTGTGTCTGTCTATGCCTCCAAAGTGCTGAGATGAA...AAGGCTTCTCCAGGGACTCACTAACACCCTCACTCCTCCAGGACTTTTTGAACT
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000035648.6
3UTR-3UTR GCA 90 bp CCTGGAGGAGTGAGGGTGTTAGTGAGTCCCTGGAGAAGCCTTAAAACAAAGATCAGTCATCCTGAGACCTaGAATCCACATACAACTTCA +
Preference number: 2 (lower is better)
Translates to: PGGVRVLVSPWRSLKTKISHPET*NPHTTS
Trigger: TGAAGTTGTATGTGGATTGCAGGTCTCAGGATGACT...GATCTTTGTTTTAAGGCTTCTCCAGGGACTCACTAACACCCTCACTCCTCCAGG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000035648.6
3UTR-3UTR CCA 90 bp CCTGGAGGAGTGAGGGTGTTAGTGAGTCCCTGGAGAAGCCTTAAAACAAAGATCAGTCCTCAAAGCTCCTaGGGAAAGAAAACAAATGTG +
Preference number: 2 (lower is better)
Translates to: PGGVRVLVSPWRSLKTKISPQSS*GKKTNV
Trigger: CACATTTGTTTTCTTTCCCCAGGAGCTTTGAGGACT...GATCTTTGTTTTAAGGCTTCTCCAGGGACTCACTAACACCCTCACTCCTCCAGG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000035648.6
3UTR-3UTR CCA 90 bp CATGGCAGCATGAGGCTAGGTGCTGTCACAGTGCTGGCTTTCTCTAAGTGTTCTCTCCACTTGTACACATaGAACACTGAAAATAAACTG +
Preference number: 2 (lower is better)
Translates to: HGSMRLGAVTVLAFSKCSLHLYT*NTENKL
Trigger: CAGTTTATTTTCAGTGTTCCATGTGTACAAGTGGAG...AGAACACTTAGAGAAAGCCAGCACTGTGACAGCACCTAGCCTCATGCTGCCATG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000035648.6
3UTR-3UTR CCA 90 bp CATGGCAGCATGAGGCTAGGTGCTGTCACAGTGCTGGCTTTCTCTAAGTGTTCTGCTCTAGAATCTTTTTaGGATAAGTTCTTTTGCAGT +
Preference number: 2 (lower is better)
Translates to: HGSMRLGAVTVLAFSKCSALESF*DKFFCS
Trigger: ACTGCAAAAGAACTTATCCCAAAAAGATTCTAGAGC...AGAACACTTAGAGAAAGCCAGCACTGTGACAGCACCTAGCCTCATGCTGCCATG
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000035648.6
3UTR-3UTR CCA 90 bp AGTTCAAAAAGTCCTGGAGGAGTGAGGGTGTTAGTGAGTCCCTGGAGAAGCCTTTTCAGTTTTCTCATCTaGTTAGTAACCATGGCAGAA +
Preference number: 2 (lower is better)
Translates to: SSKSPGGVRVLVSPWRSLFSFLI*LVTMAE
Trigger: TTCTGCCATGGTTACTAACCAGATGAGAAAACTGAA...AAGGCTTCTCCAGGGACTCACTAACACCCTCACTCCTCCAGGACTTTTTGAACT
44% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000035648.6
3UTR-3UTR TCA 90 bp CATATATTGAATGCTAATCTCCCCATGCATTCCAAGTGTTTTCTGTTCCCTTCTATTATGAACACTCAATaGATGCTGGAGAGATGCAGC +
Preference number: 2 (lower is better)
Translates to: HILNANLPMHSKCFLFPSIMNTQ*MLERCS
Trigger: GCTGCATCTCTCCAGCATTCATTGAGTGTTCATAAT...AGAAGGGAACAGAAAACACTTGGAATGCATGGGGAGATTAGCATTCAATATATG
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000035648.6
3UTR-3UTR CCA 90 bp CATATATTGAATGCTAATCTCCCCATGCATTCCAAGTGTTTTCTGTTCCCTTCTTGCCATGTGTGCTTCTaGTTGGAATTTAAGACTGCT +
Preference number: 2 (lower is better)
Translates to: HILNANLPMHSKCFLFPSCHVCF*LEFKTA
Trigger: AGCAGTCTTAAATTCCAACCAGAAGCACACATGGCA...AGAAGGGAACAGAAAACACTTGGAATGCATGGGGAGATTAGCATTCAATATATG
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000035648.6
3UTR-3UTR CAA 90 bp AAAGGAGCCAGATGCAGTGGTGCACAGCTGCAAGCCCCGGAGCCTGAGGCAGGTACAGCTGCACTCTTTTaGTGTGTATGTGATGGCACG +
Preference number: 3 (lower is better)
Translates to: KGARCSGAQLQAPEPEAGTAALF*CVCDGT
Trigger: CGTGCCATCACATACACACAAAAAGAGTGCAGCTGT...ACCTGCCTCAGGCTCCGGGGCTTGCAGCTGTGCACCACTGCATCTGGCTCCTTT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000035648.6
3UTR TCA 72 bp GTGGACTCCTGGTTCACTCTTCCTGCTCAGGTGTCCTaGGCGCTGAGACAGCAGGTATGGATCACAATGCCC +
Preference number: 3 (lower is better)
Translates to: VDSWFTLPAQVS*ALRQQVWITMP
Trigger: GGGCATTGTGATCCATACCTGCTGTCTCAGCGCTCAGGACACCTGAGCAGGAAGAGTGAACCAGGAGTCCAC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000035648.6
3UTR TCA 72 bp CTGCAAGCCCCGGAGCCTGAGGCAGGTCAGCCTGAGTaGCACAGTCAATCTCAAAAGCAGGACAACAACAGA +
Preference number: 3 (lower is better)
Translates to: LQAPEPEAGQPE*HSQSQKQDNNR
Trigger: TCTGTTGTTGTCCTGCTTTTGAGATTGACTGTGTCACTCAGGCTGACCTGCCTCAGGCTCCGGGGCTTGCAG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000035648.6
3UTR GCA 72 bp GTGCAGTCTAGTTGTGGACTCCTGGTTCACTCTTCCTaGTCAGGTGTCCTGAGCGCTGAGACAGCAGGTATG +
Preference number: 3 (lower is better)
Translates to: VQSSCGLLVHSS*SGVLSAETAGM
Trigger: CATACCTGCTGTCTCAGCGCTCAGGACACCTGAGCAGGAAGAGTGAACCAGGAGTCCACAACTAGACTGCAC
56% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000035648.6
3UTR GCA 72 bp TGGAGAGATGCAGCTCAGCAAAGCCCATGCCTTGAGTaGACAAGCAAGGGGAATGATCCCCAGGCCTGGAAA +
Preference number: 3 (lower is better)
Translates to: WRDAAQQSPCLE*TSKGNDPQAWK
Trigger: TTTCCAGGCCTGGGGATCATTCCCCTTGCTTGTGCACTCAAGGCATGGGCTTTGCTGAGCTGCATCTCTCCA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000035648.6
3UTR GCA 72 bp AGACGACATTCCCTCTCCAGGCCCCACAATCATGAGTaGAGGGTGCATTTGTGCCATGGCAGCATGAGGCTA +
Preference number: 3 (lower is better)
Translates to: RRHSLSRPHNHE*RVHLCHGSMRL
Trigger: TAGCCTCATGCTGCCATGGCACAAATGCACCCTGCACTCATGATTGTGGGGCCTGGAGAGGGAATGTCGTCT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000035648.6
3UTR TCA 72 bp AAGGGTGTTCGGGGAAGACTTCCTTACAGTGCAGCTTaGGCAGGGAGGAGCACAGGTGTCAGGTGCATTTGT +
Preference number: 3 (lower is better)
Translates to: KGVRGRLPYSAA*AGRSTGVRCIC
Trigger: ACAAATGCACCTGACACCTGTGCTCCTCCCTGCTCAAGCTGCACTGTAAGGAAGTCTTCCCCGAACACCCTT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000035648.6
3UTR GCA 72 bp ATAAGCCACTGTCCACAGTGCTCTGTGACTATTCCCTaGATGACCTCACTGCAAGGCATGCTGAGGAAGGGC +
Preference number: 3 (lower is better)
Translates to: ISHCPQCSVTIP*MTSLQGMLRKG
Trigger: GCCCTTCCTCAGCATGCCTTGCAGTGAGGTCATGCAGGGAATAGTCACAGAGCACTGTGGACAGTGGCTTAT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000035648.6
3UTR-3UTR CAA 90 bp CATGGCAGCATGAGGCTAGGTGCTGTCACAGTGCTGGCTTTCTCTAAGTGTTCTAACTGTCAAGCCTTTTaGCCAACTGGCTGCCCTCTA +
Preference number: 3 (lower is better)
Translates to: HGSMRLGAVTVLAFSKCSNCQAF*PTGCPL
Trigger: TAGAGGGCAGCCAGTTGGCAAAAAGGCTTGACAGTT...AGAACACTTAGAGAAAGCCAGCACTGTGACAGCACCTAGCCTCATGCTGCCATG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000035648.6
3UTR TCA 72 bp TTCAACAGTCTTGCCCCCAATCACCTGGCAAAGCCATaGAAACTGTCAAGCCTTTTTGCCAACTGGCTGCCC +
Preference number: 3 (lower is better)
Translates to: FNSLAPNHLAKP*KLSSLFANWLP
Trigger: GGGCAGCCAGTTGGCAAAAAGGCTTGACAGTTTTCATGGCTTTGCCAGGTGATTGGGGGCAAGACTGTTGAA
51% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000035648.6
3UTR GCA 72 bp ATTCACACTCTTGCGCAGAAGACAAGTGGTCAGCACTaGACCGTGTTGTTCCACAGCTTCTTCCATGGCTCA +
Preference number: 3 (lower is better)
Translates to: IHTLAQKTSGQH*TVLFHSFFHGS
Trigger: TGAGCCATGGAAGAAGCTGTGGAACAACACGGTGCAGTGCTGACCACTTGTCTTCTGCGCAAGAGTGTGAAT
51% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000035648.6
3UTR GCA 72 bp TGTGGGGCTTTTTACCTGTGTCTTATGTACTCAGTGTaGTGCTGTGCCTCTGCAGTGACATTGAGTGTGGCA +
Preference number: 3 (lower is better)
Translates to: CGAFYLCLMYSV*CCASAVTLSVA
Trigger: TGCCACACTCAATGTCACTGCAGAGGCACAGCAGCACACTGAGTACATAAGACACAGGTAAAAAGCCCCACA
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000035648.6
3UTR CCA 72 bp CATGTCCACAATTCACACTCTTGCGCAGAAGACAAGTaGTCAGCACTGCACCGTGTTGTTCCACAGCTTCTT +
Preference number: 3 (lower is better)
Translates to: HVHNSHSCAEDK*SALHRVVPQLL
Trigger: AAGAAGCTGTGGAACAACACGGTGCAGTGCTGACCACTTGTCTTCTGCGCAAGAGTGTGAATTGTGGACATG
50% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000035648.6
3UTR-3UTR CAA 90 bp CATGGCAGCATGAGGCTAGGTGCTGTCACAGTGCTGGCTTTCTCTAAGTGTTCTCATGTGTGCTTCTGGTaGGAATTTAAGACTGCTGTG +
Preference number: 3 (lower is better)
Translates to: HGSMRLGAVTVLAFSKCSHVCFW*EFKTAV
Trigger: CACAGCAGTCTTAAATTCCAACCAGAAGCACACATG...AGAACACTTAGAGAAAGCCAGCACTGTGACAGCACCTAGCCTCATGCTGCCATG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000035648.6
3UTR TCA 72 bp CCCACCACCAGACCACCAAGGTCTGCTTTTACTTACTaGCATTTAGAGTTGTTAACCACCCAAGGCCTTCTC +
Preference number: 3 (lower is better)
Translates to: PTTRPPRSAFTY*HLELLTTQGLL
Trigger: GAGAAGGCCTTGGGTGGTTAACAACTCTAAATGTCAGTAAGTAAAAGCAGACCTTGGTGGTCTGGTGGTGGG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000035648.6
3UTR GCA 72 bp CAGCACTTTGGAGGCATAGACAGACACACTGATCTCTaGAAGTTCCAGGCTAGGCAGATCTACATAGTGAGA +
Preference number: 3 (lower is better)
Translates to: QHFGGIDRHTDL*KFQARQIYIVR
Trigger: TCTCACTATGTAGATCTGCCTAGCCTGGAACTTGCAGAGATCAGTGTGTCTGTCTATGCCTCCAAAGTGCTG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000035648.6
3UTR GCA 72 bp CCTGTGTCTTATGTACTCAGTGTGCTGCTGTGCCTCTaGAGTGACATTGAGTGTGGCATTACTCCACTTGTA +
Preference number: 3 (lower is better)
Translates to: PVSYVLSVLLCL*SDIECGITPLV
Trigger: TACAAGTGGAGTAATGCCACACTCAATGTCACTGCAGAGGCACAGCAGCACACTGAGTACATAAGACACAGG
49% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000035648.6
3UTR GCA 72 bp GGGGCTTTTTACCTGTGTCTTATGTACTCAGTGTGCTaGTGTGCCTCTGCAGTGACATTGAGTGTGGCATTA +
Preference number: 3 (lower is better)
Translates to: GAFYLCLMYSVC*CASAVTLSVAL
Trigger: TAATGCCACACTCAATGTCACTGCAGAGGCACAGCAGCACACTGAGTACATAAGACACAGGTAAAAAGCCCC
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000035648.6
3UTR TCA 72 bp TGCAATCCACATACAACTTCAGTCTCCTTTCTAACGTaGCCTGGAACAGGAGTGTGTGGGAGTAATGGCACA +
Preference number: 3 (lower is better)
Translates to: CNPHTTSVSFLT*PGTGVCGSNGT
Trigger: TGTGCCATTACTCCCACACACTCCTGTTCCAGGTCACGTTAGAAAGGAGACTGAAGTTGTATGTGGATTGCA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000035648.6
3UTR GCA 72 bp AGCCATGAAAACTGTCAAGCCTTTTTGCCAACTGGCTaGCCTCTACCGGACAACTTAGATCAGTGCACTATT +
Preference number: 3 (lower is better)
Translates to: SHENCQAFLPTG*PLPDNLDQCTI
Trigger: AATAGTGCACTGATCTAAGTTGTCCGGTAGAGGGCAGCCAGTTGGCAAAAAGGCTTGACAGTTTTCATGGCT
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000035648.6
3UTR-3UTR CAA 90 bp AGTTCAAAAAGTCCTGGAGGAGTGAGGGTGTTAGTGAGTCCCTGGAGAAGCCTTTCTTTCCCACTGACATaGTTCATAAATAATACGGCC +
Preference number: 3 (lower is better)
Translates to: SSKSPGGVRVLVSPWRSLSFPLT*FINNTA
Trigger: GGCCGTATTATTTATGAACAATGTCAGTGGGAAAGA...AAGGCTTCTCCAGGGACTCACTAACACCCTCACTCCTCCAGGACTTTTTGAACT
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000035648.6
3UTR GCA 72 bp TTTTTACCTGTGTCTTATGTACTCAGTGTGCTGCTGTaGCTCTGCAGTGACATTGAGTGTGGCATTACTCCA +
Preference number: 3 (lower is better)
Translates to: FLPVSYVLSVLL*LCSDIECGITP
Trigger: TGGAGTAATGCCACACTCAATGTCACTGCAGAGGCACAGCAGCACACTGAGTACATAAGACACAGGTAAAAA
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000035648.6
3UTR GCA 72 bp GCAAGGCTTACTTCCCACCACCAGACCACCAAGGTCTaGTTTTACTTACTGACATTTAGAGTTGTTAACCAC +
Preference number: 3 (lower is better)
Translates to: ARLTSHHQTTKV*FYLLTFRVVNH
Trigger: GTGGTTAACAACTCTAAATGTCAGTAAGTAAAAGCAGACCTTGGTGGTCTGGTGGTGGGAAGTAAGCCTTGC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000035648.6
3UTR CCA 72 bp GGTGTCAGGTGCATTTGTCTTGGAGATACTTCCAGGTaGAGAAACATTAAGTGCAAGAATCCTTGGGATGGA +
Preference number: 3 (lower is better)
Translates to: GVRCICLGDTSR*RNIKCKNPWDG
Trigger: TCCATCCCAAGGATTCTTGCACTTAATGTTTCTCCACCTGGAAGTATCTCCAAGACAAATGCACCTGACACC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000035648.6
3UTR CCA 72 bp GTGACATTGAGTGTGGCATTACTCCACTTGTACACATaGAACACTGAAAATAAACTGAAGGCTCCCTTCCCT +
Preference number: 3 (lower is better)
Translates to: VTLSVALLHLYT*NTENKLKAPFP
Trigger: AGGGAAGGGAGCCTTCAGTTTATTTTCAGTGTTCCATGTGTACAAGTGGAGTAATGCCACACTCAATGTCAC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000035648.6
3UTR GCA 72 bp GTAAAACTGTGTCCCTGCATGATTAATTTTAAACTATaGACATCCTCCAGTGTGTCAACACAGCTGCTTTCC +
Preference number: 3 (lower is better)
Translates to: VKLCPCMINFKL*TSSSVSTQLLS
Trigger: GGAAAGCAGCTGTGTTGACACACTGGAGGATGTGCATAGTTTAAAATTAATCATGCAGGGACACAGTTTTAC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000035648.6
3UTR GCA 72 bp TTTCAAGATATAAGGTGTTTTCCTAAGGCTGTACTGTaGATAAGCCACTGTCCACAGTGCTCTGTGACTATT +
Preference number: 3 (lower is better)
Translates to: FQDIRCFPKAVL*ISHCPQCSVTI
Trigger: AATAGTCACAGAGCACTGTGGACAGTGGCTTATGCACAGTACAGCCTTAGGAAAACACCTTATATCTTGAAA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000035648.6
3UTR CCA 72 bp GCTTTCTCTAAGTGTTCTTGTGAGGAGGGACTCTCCTaGAGTTGTTTCACACAGATTTTTGGAGTTCAAAAA +
Preference number: 3 (lower is better)
Translates to: AFSKCSCEEGLS*SCFTQIFGVQK
Trigger: TTTTTGAACTCCAAAAATCTGTGTGAAACAACTCCAGGAGAGTCCCTCCTCACAAGAACACTTAGAGAAAGC
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000035648.6
3UTR TCA 72 bp TACTTTCAATTTGGGAAATACATTATGAACACTCAATaGATGCTGGAGAGATGCAGCTCAGCAAAGCCCATG +
Preference number: 3 (lower is better)
Translates to: YFQFGKYIMNTQ*MLERCSSAKPM
Trigger: CATGGGCTTTGCTGAGCTGCATCTCTCCAGCATTCATTGAGTGTTCATAATGTATTTCCCAAATTGAAAGTA
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000035648.6
3UTR TCA 72 bp ATCACCAGTGACAGCTGCACTCTTTTTGTGTGTATGTaGTGGCACGGAATACACATAAAATTGGATACTAGT +
Preference number: 3 (lower is better)
Translates to: ITSDSCTLFVCM*WHGIHIKLDTS
Trigger: ACTAGTATCCAATTTTATGTGTATTCCGTGCCATCACATACACACAAAAAGAGTGCAGCTGTCACTGGTGAT
40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000035648.6
3UTR TCA 72 bp GCAAGAATCCTTGGGATGGACACAATCTTAAATGTCTaGATTACAGCATGGCCTTTCCTGTTTGATCATTCA +
Preference number: 3 (lower is better)
Translates to: ARILGMDTILNV*ITAWPFLFDHS
Trigger: TGAATGATCAAACAGGAAAGGCCATGCTGTAATTCAGACATTTAAGATTGTGTCCATCCCAAGGATTCTTGC
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000035648.6
3UTR GCA 72 bp TGTCTTGGAGATACTTCCAGGTGGAGAAACATTAAGTaGAAGAATCCTTGGGATGGACACAATCTTAAATGT +
Preference number: 3 (lower is better)
Translates to: CLGDTSRWRNIK*KNPWDGHNLKC
Trigger: ACATTTAAGATTGTGTCCATCCCAAGGATTCTTGCACTTAATGTTTCTCCACCTGGAAGTATCTCCAAGACA
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000035648.6
3UTR CCA 72 bp ACTTCCAGGTGGAGAAACATTAAGTGCAAGAATCCTTaGGATGGACACAATCTTAAATGTCTGAATTACAGC +
Preference number: 3 (lower is better)
Translates to: TSRWRNIKCKNP*DGHNLKCLNYS
Trigger: GCTGTAATTCAGACATTTAAGATTGTGTCCATCCCAAGGATTCTTGCACTTAATGTTTCTCCACCTGGAAGT
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000035648.6
3UTR GCA 72 bp AGACTCATCTGCTCACAATTTGTAAAACTGTGTCCCTaGATGATTAATTTTAAACTATGCACATCCTCCAGT +
Preference number: 3 (lower is better)
Translates to: RLICSQFVKLCP*MINFKLCTSSS
Trigger: ACTGGAGGATGTGCATAGTTTAAAATTAATCATGCAGGGACACAGTTTTACAAATTGTGAGCAGATGAGTCT
38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000035648.6
3UTR CAA 72 bp AATGCTGGAGAGATGCAGCTCAGCAAAGCCCATGCCTaGAGTGCACAAGCAAGGGGAATGATCCCCAGGCCT +
Preference number: 4 (lower is better)
Translates to: NAGEMQLSKAHA*SAQARGMIPRP
Trigger: AGGCCTGGGGATCATTCCCCTTGCTTGTGCACTCAAGGCATGGGCTTTGCTGAGCTGCATCTCTCCAGCATT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000035648.6
3UTR CAA 72 bp AAAGGGTGTTCGGGGAAGACTTCCTTACAGTGCAGCTaGAGCAGGGAGGAGCACAGGTGTCAGGTGCATTTG +
Preference number: 4 (lower is better)
Translates to: KGCSGKTSLQCS*SREEHRCQVHL
Trigger: CAAATGCACCTGACACCTGTGCTCCTCCCTGCTCAAGCTGCACTGTAAGGAAGTCTTCCCCGAACACCCTTT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000035648.6
CDS-3UTR GCA 90 bp TCAACAGTCTTGCCCCCAATCACCTGGCAAAGCCATGAAAACTGTCAAGCCTTTGGAGCCGAGGGGAGCTaGAGCACAACCTCTGAATCT +
Preference number: 4 (lower is better)
Translates to: STVLPPITWQSHENCQAFGAEGS*STTSES
Trigger: AGATTCAGAGGTTGTGCTGCAGCTCCCCTCGGCTCC...AAAGGCTTGACAGTTTTCATGGCTTTGCCAGGTGATTGGGGGCAAGACTGTTGA
52% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000035648.6
CDS-3UTR GCA 90 bp CATATATTGAATGCTAATCTCCCCATGCATTCCAAGTGTTTTCTGTTCCCTTCTCGTTCCGGGCGAAACTaGAGCCGAGGACGGGGGCTC +
Preference number: 4 (lower is better)
Translates to: HILNANLPMHSKCFLFPSRSGRN*SRGRGL
Trigger: GAGCCCCCGTCCTCGGCTGCAGTTTCGCCCGGAACG...AGAAGGGAACAGAAAACACTTGGAATGCATGGGGAGATTAGCATTCAATATATG
51% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000035648.6
3UTR CAA 72 bp GAGCAGGGAGGAGCACAGGTGTCAGGTGCATTTGTCTaGGAGATACTTCCAGGTGGAGAAACATTAAGTGCA +
Preference number: 4 (lower is better)
Translates to: EQGGAQVSGAFV*EILPGGETLSA
Trigger: TGCACTTAATGTTTCTCCACCTGGAAGTATCTCCAAGACAAATGCACCTGACACCTGTGCTCCTCCCTGCTC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000035648.6
3UTR CAA 72 bp ATGTACTCAGTGTGCTGCTGTGCCTCTGCAGTGACATaGAGTGTGGCATTACTCCACTTGTACACATGGAAC +
Preference number: 4 (lower is better)
Translates to: MYSVCCCASAVT*SVALLHLYTWN
Trigger: GTTCCATGTGTACAAGTGGAGTAATGCCACACTCAATGTCACTGCAGAGGCACAGCAGCACACTGAGTACAT
49% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000035648.6
3UTR CAA 72 bp AGGAGGGACTCTCCTGGAGTTGTTTCACACAGATTTTaGGAGTTCAAAAAGTCCTGGAGGAGTGAGGGTGTT +
Preference number: 4 (lower is better)
Translates to: RRDSPGVVSHRF*EFKKSWRSEGV
Trigger: AACACCCTCACTCCTCCAGGACTTTTTGAACTCCAAAAATCTGTGTGAAACAACTCCAGGAGAGTCCCTCCT
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000035648.6
3UTR CAA 72 bp GCCTCTGCAGTGACATTGAGTGTGGCATTACTCCACTaGTACACATGGAACACTGAAAATAAACTGAAGGCT +
Preference number: 4 (lower is better)
Translates to: ASAVTLSVALLH*YTWNTENKLKA
Trigger: AGCCTTCAGTTTATTTTCAGTGTTCCATGTGTACAAGTGGAGTAATGCCACACTCAATGTCACTGCAGAGGC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000035648.6