Pregenerated sensors for ATG101 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000037204Ensembl transcript IDs: ENSMUST00000048393.8, ENSMUST00000229525.2, ENSMUST00000230525.2
Found 57 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR GCA 90 bp | ACCCCACCAGAGCAGGTGGAAAGGCTGCATCCAGGACCAGACCACTaGAAAGGTGACAGGGTCACCAGAGGCTGGCAACCACAAAACAAG | + |
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Preference number: 1 (lower is better) Translates to: TPPEQVERLHPGPDH*KGDRVTRGWQPQNK Trigger: CTTGTTTTGTGGTTGCCAGCCTCTGGTGACCCTGTCACCTTTGCAGTGGTCTGGTCCTGGATGCAGCCTTTCCACCTGCTCTGGTGGGGT 58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000048393.8 |
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| 3UTR TCA 90 bp | AGAGCAGGTGGAAAGGCTGCATCCAGGACCAGACCACTGCAAAGGTaGCAGGGTCACCAGAGGCTGGCAACCACAAAACAAGGACACCAC | + |
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Preference number: 1 (lower is better) Translates to: RAGGKAASRTRPLQR*QGHQRLATTKQGHH Trigger: GTGGTGTCCTTGTTTTGTGGTTGCCAGCCTCTGGTGACCCTGTCACCTTTGCAGTGGTCTGGTCCTGGATGCAGCCTTTCCACCTGCTCT 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000048393.8 |
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| 3UTR GCA 72 bp | GAGCAGGTGGAAAGGCTGCATCCAGGACCAGACCACTaGAAAGGTGACAGGGTCACCAGAGGCTGGCAACCA | + |
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Preference number: 3 (lower is better) Translates to: EQVERLHPGPDH*KGDRVTRGWQP Trigger: TGGTTGCCAGCCTCTGGTGACCCTGTCACCTTTGCAGTGGTCTGGTCCTGGATGCAGCCTTTCCACCTGCTC 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000048393.8 |
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| 3UTR TCA 72 bp | GGAAAGGCTGCATCCAGGACCAGACCACTGCAAAGGTaGCAGGGTCACCAGAGGCTGGCAACCACAAAACAA | + |
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Preference number: 3 (lower is better) Translates to: GKAASRTRPLQR*QGHQRLATTKQ Trigger: TTGTTTTGTGGTTGCCAGCCTCTGGTGACCCTGTCACCTTTGCAGTGGTCTGGTCCTGGATGCAGCCTTTCC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000048393.8 |
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| 3UTR CCA 72 bp | CCAGACCACTGCAAAGGTGACAGGGTCACCAGAGGCTaGCAACCACAAAACAAGGACACCACGAGCTTCTCT | + |
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Preference number: 3 (lower is better) Translates to: PDHCKGDRVTRG*QPQNKDTTSFS Trigger: AGAGAAGCTCGTGGTGTCCTTGTTTTGTGGTTGCCAGCCTCTGGTGACCCTGTCACCTTTGCAGTGGTCTGG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000048393.8 |
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| 3UTR CCA 72 bp | CAGTACAGTGTAGAACTTGAACCCCACCAGAGCAGGTaGAAAGGCTGCATCCAGGACCAGACCACTGCAAAG | + |
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Preference number: 3 (lower is better) Translates to: QYSVELEPHQSR*KGCIQDQTTAK Trigger: CTTTGCAGTGGTCTGGTCCTGGATGCAGCCTTTCCACCTGCTCTGGTGGGGTTCAAGTTCTACACTGTACTG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000048393.8 |
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| CDS-3UTR TCA 90 bp | GATCTAGTGCAGGTTCCAGAGCCCCGAGATCCCAGCAACACGCTCCCAGAACCACATGGTGGTGGTGACTaGGGTGCCCAGGGCCTCGGT | + |
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Preference number: 4 (lower is better) Translates to: DLVQVPEPRDPSNTLPEPHGGGD*GAQGLG Trigger: ACCGAGGCCCTGGGCACCTCAGTCACCACCACCATG...TGGTTCTGGGAGCGTGTTGCTGGGATCTCGGGGCTCTGGAACCTGCACTAGATC 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000048393.8 |
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| CDS-3UTR GCA 90 bp | GTTCCAGAGCCCCGAGATCCCAGCAACACGCTCCCAGAACCATTAAGGAGCTGCTTGCCCGTGCTGCGGTaGAGGAGCACCGTGTGCAGC | + |
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Preference number: 4 (lower is better) Translates to: VPEPRDPSNTLPEPLRSCLPVLR*RSTVCS Trigger: GCTGCACACGGTGCTCCTGCACCGCAGCACGGGCAA...GCAGCTCCTTAATGGTTCTGGGAGCGTGTTGCTGGGATCTCGGGGCTCTGGAAC 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000048393.8 |
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| CDS-3UTR GCA 90 bp | AGTGCAGGTTCCAGAGCCCCGAGATCCCAGCAACACGCTCCCAGAACCATTAAGTGCAGGAGCACCGTGTaGAGCACCGCCAGCATGGCC | + |
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Preference number: 4 (lower is better) Translates to: SAGSRAPRSQQHAPRTIKCRSTV*STASMA Trigger: GGCCATGCTGGCGGTGCTGCACACGGTGCTCCTGCA...CTTAATGGTTCTGGGAGCGTGTTGCTGGGATCTCGGGGCTCTGGAACCTGCACT 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000048393.8 |
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| CDS-3UTR CCA 90 bp | GATCTAGTGCAGGTTCCAGAGCCCCGAGATCCCAGCAACACGCTCCCAGAACCAGCCGCTCCTGCTCTGTaGCCAAGGCTACCACGTGCA | + |
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Preference number: 4 (lower is better) Translates to: DLVQVPEPRDPSNTLPEPAAPAL*PRLPRA Trigger: TGCACGTGGTAGCCTTGGCCACAGAGCAGGAGCGGC...TGGTTCTGGGAGCGTGTTGCTGGGATCTCGGGGCTCTGGAACCTGCACTAGATC 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000048393.8 |
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| CDS-3UTR GCA 90 bp | GATCTAGTGCAGGTTCCAGAGCCCCGAGATCCCAGCAACACGCTCCCAGAACCATTCTCCCTGCATATCTaGCGCTCCTGCTCTGTGGCC | + |
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Preference number: 4 (lower is better) Translates to: DLVQVPEPRDPSNTLPEPFSLHI*RSCSVA Trigger: GGCCACAGAGCAGGAGCGGCAGATATGCAGGGAGAA...TGGTTCTGGGAGCGTGTTGCTGGGATCTCGGGGCTCTGGAACCTGCACTAGATC 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000048393.8 |
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| CDS-3UTR TCA 90 bp | GTTCCAGAGCCCCGAGATCCCAGCAACACGCTCCCAGAACCATTAAGGAGCTGCTGCCCAGGGCCTCGGTaGTCTGAAAGGAGATCTTGT | + |
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Preference number: 4 (lower is better) Translates to: VPEPRDPSNTLPEPLRSCCPGPR*SERRSC Trigger: ACAAGATCTCCTTTCAGATCACCGAGGCCCTGGGCA...GCAGCTCCTTAATGGTTCTGGGAGCGTGTTGCTGGGATCTCGGGGCTCTGGAAC 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000048393.8 |
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| CDS-3UTR GCA 90 bp | AGTGCAGGTTCCAGAGCCCCGAGATCCCAGCAACACGCTCCCAGAACCATTAAGCATATCTGCCGCTCCTaGTCTGTGGCCAAGGCTACC | + |
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Preference number: 4 (lower is better) Translates to: SAGSRAPRSQQHAPRTIKHICRS*SVAKAT Trigger: GGTAGCCTTGGCCACAGAGCAGGAGCGGCAGATATG...CTTAATGGTTCTGGGAGCGTGTTGCTGGGATCTCGGGGCTCTGGAACCTGCACT 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000048393.8 |
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| CDS-3UTR GCA 90 bp | ACAGGGTCACCAGAGGCTGGCAACCACAAAACAAGGACACCACGAGCTTCTCTTCGCCCACCTTCTCCCTaGATATCTGCCGCTCCTGCT | + |
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Preference number: 4 (lower is better) Translates to: TGSPEAGNHKTRTPRASLRPPSP*ISAAPA Trigger: AGCAGGAGCGGCAGATATGCAGGGAGAAGGTGGGCG...AAGAGAAGCTCGTGGTGTCCTTGTTTTGTGGTTGCCAGCCTCTGGTGACCCTGT 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000048393.8 |
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| CDS-3UTR CCA 90 bp | AAGGTGACAGGGTCACCAGAGGCTGGCAACCACAAAACAAGGACACCACGAGCTTGCCCACGGTGCCTATaGAGTACGTGCCCTCCTTCT | + |
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Preference number: 4 (lower is better) Translates to: KVTGSPEAGNHKTRTPRACPRCL*STCPPS Trigger: AGAAGGAGGGCACGTACTCCATAGGCACCGTGGGCA...AGCTCGTGGTGTCCTTGTTTTGTGGTTGCCAGCCTCTGGTGACCCTGTCACCTT 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000048393.8 |
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| CDS-3UTR TCA 90 bp | CCAGAGGCTGGCAACCACAAAACAAGGACACCACGAGCTTCTCTTCAAGTCTCACACGTTGTCCACCTCTaGCTGCGTGGGCATCTTGGG | + |
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Preference number: 4 (lower is better) Translates to: PEAGNHKTRTPRASLQVSHVVHL*LRGHLG Trigger: CCCAAGATGCCCACGCAGTCAGAGGTGGACAACGTG...TGAGACTTGAAGAGAAGCTCGTGGTGTCCTTGTTTTGTGGTTGCCAGCCTCTGG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000048393.8 |
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| CDS-3UTR GCA 90 bp | AGGGTCACCAGAGGCTGGCAACCACAAAACAAGGACACCACGAGCTTCTCTTCATTGGGCAGGTACTCATaGCGGCTCATCACCTCCACG | + |
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Preference number: 4 (lower is better) Translates to: RVTRGWQPQNKDTTSFSSLGRYS*RLITST Trigger: CGTGGAGGTGATGAGCCGGCATGAGTACCTGCCCAA...TGAAGAGAAGCTCGTGGTGTCCTTGTTTTGTGGTTGCCAGCCTCTGGTGACCCT 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000048393.8 |
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| CDS-3UTR GCA 90 bp | CTTCTCTTCAAGTCTCACCAAGGATCTAGTGCAGGTTCCAGAGCCCCGAGATCCTTGTCCACCTCTGACTaGGTGGGCATCTTGGGCAGG | + |
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Preference number: 4 (lower is better) Translates to: LLFKSHQGSSAGSRAPRSLSTSD*VGILGR Trigger: CCTGCCCAAGATGCCCACGCAGTCAGAGGTGGACAA...GGATCTCGGGGCTCTGGAACCTGCACTAGATCCTTGGTGAGACTTGAAGAGAAG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000048393.8 |
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| CDS-3UTR CCA 90 bp | CACCAGAGCAGGTGGAAAGGCTGCATCCAGGACCAGACCACTGCAAAGGTGACAAATTCCAAGGACATCTaGCCCAGGCCATCACCACCT | + |
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Preference number: 4 (lower is better) Translates to: HQSRWKGCIQDQTTAKVTNSKDI*PRPSPP Trigger: AGGTGGTGATGGCCTGGGCCAGATGTCCTTGGAATT...TGTCACCTTTGCAGTGGTCTGGTCCTGGATGCAGCCTTTCCACCTGCTCTGGTG 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000048393.8 |
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| CDS-3UTR TCA 90 bp | AGGCTGGCAACCACAAAACAAGGACACCACGAGCTTCTCTTCAAGTCTCACCAAACGGTCCAGCTCCTCTaGGGAGACGCGCACATAGGT | + |
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Preference number: 4 (lower is better) Translates to: RLATTKQGHHELLFKSHQTVQLL*GDAHIG Trigger: ACCTATGTGCGCGTCTCCTCAGAGGAGCTGGACCGT...TTGGTGAGACTTGAAGAGAAGCTCGTGGTGTCCTTGTTTTGTGGTTGCCAGCCT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000048393.8 |
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| CDS-3UTR TCA 90 bp | AGGGTCACCAGAGGCTGGCAACCACAAAACAAGGACACCACGAGCTTCTCTTCACAGGCCATCACCACCTaGGTTCCTCAGTGCATCCTT | + |
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Preference number: 4 (lower is better) Translates to: RVTRGWQPQNKDTTSFSSQAITT*VPQCIL Trigger: AAGGATGCACTGAGGAACTCAGGTGGTGATGGCCTG...TGAAGAGAAGCTCGTGGTGTCCTTGTTTTGTGGTTGCCAGCCTCTGGTGACCCT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000048393.8 |
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| CDS-3UTR GCA 90 bp | CAGGGTCACCAGAGGCTGGCAACCACAAAACAAGGACACCACGAGCTTCTCTTCTCTTGTAGTGAAACTTaGCCGTGCTGCGGTGCAGGA | + |
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Preference number: 4 (lower is better) Translates to: QGHQRLATTKQGHHELLFSCSET*PCCGAG Trigger: TCCTGCACCGCAGCACGGGCAAGTTTCACTACAAGA...GAAGAGAAGCTCGTGGTGTCCTTGTTTTGTGGTTGCCAGCCTCTGGTGACCCTG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000048393.8 |
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| CDS-3UTR CCA 90 bp | AGGCTGGCAACCACAAAACAAGGACACCACGAGCTTCTCTTCAAGTCTCACCAAACTGCGTGGGCATCTTaGGCAGGTACTCATGCCGGC | + |
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Preference number: 4 (lower is better) Translates to: RLATTKQGHHELLFKSHQTAWAS*AGTHAG Trigger: GCCGGCATGAGTACCTGCCCAAGATGCCCACGCAGT...TTGGTGAGACTTGAAGAGAAGCTCGTGGTGTCCTTGTTTTGTGGTTGCCAGCCT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000048393.8 |
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| CDS-3UTR CCA 90 bp | CCAGAGGCTGGCAACCACAAAACAAGGACACCACGAGCTTCTCTTCAAGTCTCACCACCTCTGACTGCGTaGGCATCTTGGGCAGGTACT | + |
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Preference number: 4 (lower is better) Translates to: PEAGNHKTRTPRASLQVSPPLTA*ASWAGT Trigger: AGTACCTGCCCAAGATGCCCACGCAGTCAGAGGTGG...TGAGACTTGAAGAGAAGCTCGTGGTGTCCTTGTTTTGTGGTTGCCAGCCTCTGG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000048393.8 |
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| CDS-3UTR GCA 90 bp | AGTGCAGGTTCCAGAGCCCCGAGATCCCAGCAACACGCTCCCAGAACCATTAAGTGCCTATGGAGTACGTaGCCTCCTTCTTGTAGTGAA | + |
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Preference number: 4 (lower is better) Translates to: SAGSRAPRSQQHAPRTIKCLWST*PPSCSE Trigger: TTCACTACAAGAAGGAGGGCACGTACTCCATAGGCA...CTTAATGGTTCTGGGAGCGTGTTGCTGGGATCTCGGGGCTCTGGAACCTGCACT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000048393.8 |
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| CDS-3UTR CCA 90 bp | AGGGTCACCAGAGGCTGGCAACCACAAAACAAGGACACCACGAGCTTCTCTTCATCACAGTCTACATCCTaGATGCCCACGGTGCCTATG | + |
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Preference number: 4 (lower is better) Translates to: RVTRGWQPQNKDTTSFSSSQSTS*MPTVPM Trigger: CATAGGCACCGTGGGCATCCAGGATGTAGACTGTGA...TGAAGAGAAGCTCGTGGTGTCCTTGTTTTGTGGTTGCCAGCCTCTGGTGACCCT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000048393.8 |
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| CDS-3UTR GCA 90 bp | AGGCTGGCAACCACAAAACAAGGACACCACGAGCTTCTCTTCAAGTCTCACCAAATTCCCCAACAACCTTaGGCAAGGCACGGTCCAGCT | + |
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Preference number: 4 (lower is better) Translates to: RLATTKQGHHELLFKSHQIPQQP*ARHGPA Trigger: AGCTGGACCGTGCCTTGCGCAAGGTTGTTGGGGAAT...TTGGTGAGACTTGAAGAGAAGCTCGTGGTGTCCTTGTTTTGTGGTTGCCAGCCT 52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000048393.8 |
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| CDS TCA 90 bp | GGGCTGCACGTCCCGCAGGCCCGTGTCAAACACGTTGTCCACCTCTaGCTGCGTGGGCATCTTGGGCAGGTACTCATGCCGGCTCATCAC | + |
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Preference number: 5 (lower is better) Translates to: GLHVPQARVKHVVHL*LRGHLGQVLMPAHH Trigger: GTGATGAGCCGGCATGAGTACCTGCCCAAGATGCCCACGCAGTCAGAGGTGGACAACGTGTTTGACACGGGCCTGCGGGACGTGCAGCCC 63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000048393.8 |
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| CDS GCA 90 bp | CCACGGTGCCTATGGAGTACGTGCCCTCCTTCTTGTAGTGAAACTTaGCCGTGCTGCGGTGCAGGAGCACCGTGTGCAGCACCGCCAGCA | + |
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Preference number: 5 (lower is better) Translates to: PRCLWSTCPPSCSET*PCCGAGAPCAAPPA Trigger: TGCTGGCGGTGCTGCACACGGTGCTCCTGCACCGCAGCACGGGCAAGTTTCACTACAAGAAGGAGGGCACGTACTCCATAGGCACCGTGG 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000048393.8 ENSMUST00000229525.2 ENSMUST00000230525.2 |
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| CDS GCA 90 bp | TGCACGTCCCGCAGGCCCGTGTCAAACACGTTGTCCACCTCTGACTaGGTGGGCATCTTGGGCAGGTACTCATGCCGGCTCATCACCTCC | + |
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Preference number: 5 (lower is better) Translates to: CTSRRPVSNTLSTSD*VGILGRYSCRLITS Trigger: GGAGGTGATGAGCCGGCATGAGTACCTGCCCAAGATGCCCACGCAGTCAGAGGTGGACAACGTGTTTGACACGGGCCTGCGGGACGTGCA 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000048393.8 |
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| CDS CCA 90 bp | CGTCCCGCAGGCCCGTGTCAAACACGTTGTCCACCTCTGACTGCGTaGGCATCTTGGGCAGGTACTCATGCCGGCTCATCACCTCCACGA | + |
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Preference number: 5 (lower is better) Translates to: RPAGPCQTRCPPLTA*ASWAGTHAGSSPPR Trigger: TCGTGGAGGTGATGAGCCGGCATGAGTACCTGCCCAAGATGCCCACGCAGTCAGAGGTGGACAACGTGTTTGACACGGGCCTGCGGGACG 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000048393.8 |
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| CDS GCA 90 bp | CTATGGAGTACGTGCCCTCCTTCTTGTAGTGAAACTTGCCCGTGCTaGGGTGCAGGAGCACCGTGTGCAGCACCGCCAGCATGGCCTCCT | + |
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Preference number: 5 (lower is better) Translates to: LWSTCPPSCSETCPC*GAGAPCAAPPAWPP Trigger: AGGAGGCCATGCTGGCGGTGCTGCACACGGTGCTCCTGCACCGCAGCACGGGCAAGTTTCACTACAAGAAGGAGGGCACGTACTCCATAG 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000048393.8 ENSMUST00000229525.2 ENSMUST00000230525.2 |
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| CDS GCA 90 bp | TGCCTATGGAGTACGTGCCCTCCTTCTTGTAGTGAAACTTGCCCGTaGTGCGGTGCAGGAGCACCGTGTGCAGCACCGCCAGCATGGCCT | + |
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Preference number: 5 (lower is better) Translates to: CLWSTCPPSCSETCP*CGAGAPCAAPPAWP Trigger: AGGCCATGCTGGCGGTGCTGCACACGGTGCTCCTGCACCGCAGCACGGGCAAGTTTCACTACAAGAAGGAGGGCACGTACTCCATAGGCA 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000048393.8 ENSMUST00000229525.2 ENSMUST00000230525.2 |
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| CDS GCA 90 bp | TCCCTGCATATCTGCCGCTCCTGCTCTGTGGCCAAGGCTACCACGTaGACCTTGACAGTCCACACCTCCCAGGGGATGCACTCATCCGAA | + |
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Preference number: 5 (lower is better) Translates to: SLHICRSCSVAKATT*TLTVHTSQGMHSSE Trigger: TTCGGATGAGTGCATCCCCTGGGAGGTGTGGACTGTCAAGGTGCACGTGGTAGCCTTGGCCACAGAGCAGGAGCGGCAGATATGCAGGGA 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000048393.8 |
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| CDS-3UTR CAA 90 bp | GTTCCAGAGCCCCGAGATCCCAGCAACACGCTCCCAGAACCATTAAGGAGCTGCGCTACCACGTGCACCTaGACAGTCCACACCTCCCAG | + |
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Preference number: 5 (lower is better) Translates to: VPEPRDPSNTLPEPLRSCATTCT*TVHTSQ Trigger: CTGGGAGGTGTGGACTGTCAAGGTGCACGTGGTAGC...GCAGCTCCTTAATGGTTCTGGGAGCGTGTTGCTGGGATCTCGGGGCTCTGGAAC 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000048393.8 |
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| CDS TCA 90 bp | ATATCTGCCGCTCCTGCTCTGTGGCCAAGGCTACCACGTGCACCTTaGCAGTCCACACCTCCCAGGGGATGCACTCATCCGAAAAAGGCC | + |
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Preference number: 5 (lower is better) Translates to: ISAAPALWPRLPRAP*QSTPPRGCTHPKKA Trigger: GGCCTTTTTCGGATGAGTGCATCCCCTGGGAGGTGTGGACTGTCAAGGTGCACGTGGTAGCCTTGGCCACAGAGCAGGAGCGGCAGATAT 59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000048393.8 |
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| CDS GCA 90 bp | AGTCACAGTCTACATCCTGGATGCCCACGGTGCCTATGGAGTACGTaGCCTCCTTCTTGTAGTGAAACTTGCCCGTGCTGCGGTGCAGGA | + |
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Preference number: 5 (lower is better) Translates to: SHSLHPGCPRCLWST*PPSCSETCPCCGAG Trigger: TCCTGCACCGCAGCACGGGCAAGTTTCACTACAAGAAGGAGGGCACGTACTCCATAGGCACCGTGGGCATCCAGGATGTAGACTGTGACT 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000048393.8 ENSMUST00000229525.2 ENSMUST00000230525.2 |
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| CDS GCA 90 bp | ACGTTGTCCACCTCTGACTGCGTGGGCATCTTGGGCAGGTACTCATaGCGGCTCATCACCTCCACGATGTTAATGATCTTCTCGCACAGC | + |
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Preference number: 5 (lower is better) Translates to: TLSTSDCVGILGRYS*RLITSTMLMIFSHS Trigger: GCTGTGCGAGAAGATCATTAACATCGTGGAGGTGATGAGCCGGCATGAGTACCTGCCCAAGATGCCCACGCAGTCAGAGGTGGACAACGT 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000048393.8 |
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| CDS-3UTR CAA 90 bp | AGGCTGCATCCAGGACCAGACCACTGCAAAGGTGACAGGGTCACCAGAGGCTGGTTCCTCAGTGCATCCTaGAATTCCCCAACAACCTTG | + |
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Preference number: 5 (lower is better) Translates to: RLHPGPDHCKGDRVTRGWFLSAS*NSPTTL Trigger: CAAGGTTGTTGGGGAATTCAAGGATGCACTGAGGAA...CCAGCCTCTGGTGACCCTGTCACCTTTGCAGTGGTCTGGTCCTGGATGCAGCCT 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000048393.8 |
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| CDS-3UTR CAA 90 bp | AGGGTCACCAGAGGCTGGCAACCACAAAACAAGGACACCACGAGCTTCTCTTCACCCGTGTCAAACACGTaGTCCACCTCTGACTGCGTG | + |
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Preference number: 5 (lower is better) Translates to: RVTRGWQPQNKDTTSFSSPVSNT*STSDCV Trigger: CACGCAGTCAGAGGTGGACAACGTGTTTGACACGGG...TGAAGAGAAGCTCGTGGTGTCCTTGTTTTGTGGTTGCCAGCCTCTGGTGACCCT 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000048393.8 |
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| CDS TCA 90 bp | CTTGAATTCCCCAACAACCTTGCGCAAGGCACGGTCCAGCTCCTCTaGGGAGACGCGCACATAGGTGAAGTCGATGAAGTCACAGTCTAC | + |
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Preference number: 5 (lower is better) Translates to: LEFPNNLAQGTVQLL*GDAHIGEVDEVTVY Trigger: GTAGACTGTGACTTCATCGACTTCACCTATGTGCGCGTCTCCTCAGAGGAGCTGGACCGTGCCTTGCGCAAGGTTGTTGGGGAATTCAAG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000048393.8 ENSMUST00000229525.2 ENSMUST00000230525.2 |
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| CDS-3UTR CAA 90 bp | GAGGCTGGCAACCACAAAACAAGGACACCACGAGCTTCTCTTCAAGTCTCACCAAATTCCCCAACAACCTaGCGCAAGGCACGGTCCAGC | + |
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Preference number: 5 (lower is better) Translates to: EAGNHKTRTPRASLQVSPNSPTT*RKARSS Trigger: GCTGGACCGTGCCTTGCGCAAGGTTGTTGGGGAATT...TGGTGAGACTTGAAGAGAAGCTCGTGGTGTCCTTGTTTTGTGGTTGCCAGCCTC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000048393.8 |
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| CDS TCA 72 bp | GCTCCTGCTCTGTGGCCAAGGCTACCACGTGCACCTTaGCAGTCCACACCTCCCAGGGGATGCACTCATCCG | + |
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Preference number: 6 (lower is better) Translates to: APALWPRLPRAP*QSTPPRGCTHP Trigger: CGGATGAGTGCATCCCCTGGGAGGTGTGGACTGTCAAGGTGCACGTGGTAGCCTTGGCCACAGAGCAGGAGC 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000048393.8 |
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| CDS GCA 72 bp | ACGTGCCCTCCTTCTTGTAGTGAAACTTGCCCGTGCTaGGGTGCAGGAGCACCGTGTGCAGCACCGCCAGCA | + |
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Preference number: 6 (lower is better) Translates to: TCPPSCSETCPC*GAGAPCAAPPA Trigger: TGCTGGCGGTGCTGCACACGGTGCTCCTGCACCGCAGCACGGGCAAGTTTCACTACAAGAAGGAGGGCACGT 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000048393.8 ENSMUST00000229525.2 ENSMUST00000230525.2 |
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| CDS GCA 72 bp | CGCAGGCCCGTGTCAAACACGTTGTCCACCTCTGACTaGGTGGGCATCTTGGGCAGGTACTCATGCCGGCTC | + |
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Preference number: 6 (lower is better) Translates to: RRPVSNTLSTSD*VGILGRYSCRL Trigger: GAGCCGGCATGAGTACCTGCCCAAGATGCCCACGCAGTCAGAGGTGGACAACGTGTTTGACACGGGCCTGCG 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000048393.8 |
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| CDS CAA 72 bp | CGCTCCTGCTCTGTGGCCAAGGCTACCACGTGCACCTaGACAGTCCACACCTCCCAGGGGATGCACTCATCC | + |
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Preference number: 6 (lower is better) Translates to: RSCSVAKATTCT*TVHTSQGMHSS Trigger: GGATGAGTGCATCCCCTGGGAGGTGTGGACTGTCAAGGTGCACGTGGTAGCCTTGGCCACAGAGCAGGAGCG 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000048393.8 |
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| CDS GCA 72 bp | AGTACGTGCCCTCCTTCTTGTAGTGAAACTTGCCCGTaGTGCGGTGCAGGAGCACCGTGTGCAGCACCGCCA | + |
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Preference number: 6 (lower is better) Translates to: STCPPSCSETCP*CGAGAPCAAPP Trigger: TGGCGGTGCTGCACACGGTGCTCCTGCACCGCAGCACGGGCAAGTTTCACTACAAGAAGGAGGGCACGTACT 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000048393.8 ENSMUST00000229525.2 ENSMUST00000230525.2 |
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| CDS CCA 72 bp | GGCCCGTGTCAAACACGTTGTCCACCTCTGACTGCGTaGGCATCTTGGGCAGGTACTCATGCCGGCTCATCA | + |
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Preference number: 6 (lower is better) Translates to: GPCQTRCPPLTA*ASWAGTHAGSS Trigger: TGATGAGCCGGCATGAGTACCTGCCCAAGATGCCCACGCAGTCAGAGGTGGACAACGTGTTTGACACGGGCC 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000048393.8 |
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| CDS CAA 90 bp | CATATCTGCCGCTCCTGCTCTGTGGCCAAGGCTACCACGTGCACCTaGACAGTCCACACCTCCCAGGGGATGCACTCATCCGAAAAAGGC | + |
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Preference number: 6 (lower is better) Translates to: HICRSCSVAKATTCT*TVHTSQGMHSSEKG Trigger: GCCTTTTTCGGATGAGTGCATCCCCTGGGAGGTGTGGACTGTCAAGGTGCACGTGGTAGCCTTGGCCACAGAGCAGGAGCGGCAGATATG 59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000048393.8 |
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| CDS TCA 72 bp | CCCAACAACCTTGCGCAAGGCACGGTCCAGCTCCTCTaGGGAGACGCGCACATAGGTGAAGTCGATGAAGTC | + |
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Preference number: 6 (lower is better) Translates to: PNNLAQGTVQLL*GDAHIGEVDEV Trigger: GACTTCATCGACTTCACCTATGTGCGCGTCTCCTCAGAGGAGCTGGACCGTGCCTTGCGCAAGGTTGTTGGG 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000048393.8 ENSMUST00000229525.2 ENSMUST00000230525.2 |
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| CDS GCA 72 bp | CTATGGAGTACGTGCCCTCCTTCTTGTAGTGAAACTTaGCCGTGCTGCGGTGCAGGAGCACCGTGTGCAGCA | + |
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Preference number: 6 (lower is better) Translates to: LWSTCPPSCSET*PCCGAGAPCAA Trigger: TGCTGCACACGGTGCTCCTGCACCGCAGCACGGGCAAGTTTCACTACAAGAAGGAGGGCACGTACTCCATAG 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000048393.8 ENSMUST00000229525.2 ENSMUST00000230525.2 |
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| CDS CCA 72 bp | CAAACACGTTGTCCACCTCTGACTGCGTGGGCATCTTaGGCAGGTACTCATGCCGGCTCATCACCTCCACGA | + |
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Preference number: 6 (lower is better) Translates to: QTRCPPLTAWAS*AGTHAGSSPPR Trigger: TCGTGGAGGTGATGAGCCGGCATGAGTACCTGCCCAAGATGCCCACGCAGTCAGAGGTGGACAACGTGTTTG 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000048393.8 |
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| CDS CAA 90 bp | AGGCCCGTGTCAAACACGTTGTCCACCTCTGACTGCGTGGGCATCTaGGGCAGGTACTCATGCCGGCTCATCACCTCCACGATGTTAATG | + |
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Preference number: 6 (lower is better) Translates to: RPVSNTLSTSDCVGI*GRYSCRLITSTMLM Trigger: CATTAACATCGTGGAGGTGATGAGCCGGCATGAGTACCTGCCCAAGATGCCCACGCAGTCAGAGGTGGACAACGTGTTTGACACGGGCCT 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000048393.8 |
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| CDS GCA 72 bp | CTACATCCTGGATGCCCACGGTGCCTATGGAGTACGTaGCCTCCTTCTTGTAGTGAAACTTGCCCGTGCTGC | + |
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Preference number: 6 (lower is better) Translates to: LHPGCPRCLWST*PPSCSETCPCC Trigger: GCAGCACGGGCAAGTTTCACTACAAGAAGGAGGGCACGTACTCCATAGGCACCGTGGGCATCCAGGATGTAG 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000048393.8 ENSMUST00000229525.2 ENSMUST00000230525.2 |
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| CDS CAA 72 bp | GAGTTCCTCAGTGCATCCTTGAATTCCCCAACAACCTaGCGCAAGGCACGGTCCAGCTCCTCTGAGGAGACG | + |
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Preference number: 6 (lower is better) Translates to: EFLSASLNSPTT*RKARSSSSEET Trigger: CGTCTCCTCAGAGGAGCTGGACCGTGCCTTGCGCAAGGTTGTTGGGGAATTCAAGGATGCACTGAGGAACTC 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000048393.8 ENSMUST00000230525.2 |
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| CDS GCA 72 bp | ACCTCTGACTGCGTGGGCATCTTGGGCAGGTACTCATaGCGGCTCATCACCTCCACGATGTTAATGATCTTC | + |
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Preference number: 6 (lower is better) Translates to: TSDCVGILGRYS*RLITSTMLMIF Trigger: GAAGATCATTAACATCGTGGAGGTGATGAGCCGGCATGAGTACCTGCCCAAGATGCCCACGCAGTCAGAGGT 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000048393.8 |
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| CDS CCA 72 bp | AGTCACAGTCTACATCCTGGATGCCCACGGTGCCTATaGAGTACGTGCCCTCCTTCTTGTAGTGAAACTTGC | + |
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Preference number: 6 (lower is better) Translates to: SHSLHPGCPRCL*STCPPSCSETC Trigger: GCAAGTTTCACTACAAGAAGGAGGGCACGTACTCCATAGGCACCGTGGGCATCCAGGATGTAGACTGTGACT 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000048393.8 ENSMUST00000229525.2 ENSMUST00000230525.2 |
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