Pregenerated sensors for ATG10 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000021619Ensembl transcript IDs: ENSMUST00000022119.6, ENSMUST00000224449.2
Found 41 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR TCA 90 bp | GAGACAGTTTGTTATTCTCATATTACACAGAACATTGTAGGGCTATaGAGAGAGGCCTGCAGTAATTCAACAGAGCAGTCGTGGGTCTCC | + |
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Preference number: 1 (lower is better) Translates to: ETVCYSHITQNIVGL*REACSNSTEQSWVS Trigger: GGAGACCCACGACTGCTCTGTTGAATTACTGCAGGCCTCTCTTCATAGCCCTACAATGTTCTGTGTAATATGAGAATAACAAACTGTCTC 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000022119.6 |
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| 3UTR TCA 90 bp | GCAGATGTCTTCTTTCTGAGGAAAGAAATCTGTATCAAATCTTGGTaGTGTGAGATATTGCAGTCCCATTTCCATGTACAGCTCTTGGCA | + |
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Preference number: 1 (lower is better) Translates to: ADVFFLRKEICIKSW*CEILQSHFHVQLLA Trigger: TGCCAAGAGCTGTACATGGAAATGGGACTGCAATATCTCACATCACCAAGATTTGATACAGATTTCTTTCCTCAGAAAGAAGACATCTGC 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000022119.6 ENSMUST00000224449.2 |
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| 3UTR TCA 90 bp | CACACATGTTCTATTCCAAACAGGCTTCTGCAGATGTCTTCTTTCTaGGGAAAGAAATCTGTATCAAATCTTGGTGATGTGAGATATTGC | + |
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Preference number: 1 (lower is better) Translates to: HTCSIPNRLLQMSSF*GKKSVSNLGDVRYC Trigger: GCAATATCTCACATCACCAAGATTTGATACAGATTTCTTTCCTCAGAAAGAAGACATCTGCAGAAGCCTGTTTGGAATAGAACATGTGTG 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000022119.6 ENSMUST00000224449.2 |
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| 3UTR-3UTR TCA 90 bp | CCATGTACAGCTCTTGGCATTCTTCATGCTGCAGTTTCTAAGATCAGCGGATCTTTAGCACAGCAGTCATaGATTCATTTGTCTTGCAGG | + |
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Preference number: 2 (lower is better) Translates to: PCTALGILHAAVSKISGSLAQQS*IHLSCR Trigger: CCTGCAAGACAAATGAATTCATGACTGCTGTGCTAA...AGATCCGCTGATCTTAGAAACTGCAGCATGAAGAATGCCAAGAGCTGTACATGG 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000224449.2 |
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| 3UTR-3UTR CCA 90 bp | ATTTTCTGTGAATTCTTTAGCACAGCAGTCATGAATTCATTTGTCTTGCAGGGATGGTTGCCCAAGTATTaGATGTTCCTGCTGGGTGAT | + |
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Preference number: 2 (lower is better) Translates to: IFCEFFSTAVMNSFVLQGWLPKY*MFLLGD Trigger: ATCACCCAGCAGGAACATCCAATACTTGGGCAACCA...TCCCTGCAAGACAAATGAATTCATGACTGCTGTGCTAAAGAATTCACAGAAAAT 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000224449.2 |
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| 3UTR CAA 90 bp | CCTGATGACGTCAGAAATGACATCATCACCAAACTAGGTTCATTCTaGTTATTTATAGTGATCGGAATCTGTGACATGTTTCTTCCACAC | + |
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Preference number: 2 (lower is better) Translates to: PDDVRNDIITKLGSF*LFIVIGICDMFLPH Trigger: GTGTGGAAGAAACATGTCACAGATTCCGATCACTATAAATAACAAGAATGAACCTAGTTTGGTGATGATGTCATTTCTGACGTCATCAGG 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000022119.6 ENSMUST00000224449.2 |
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| 3UTR-3UTR CCA 90 bp | ATCATCACCAAACTAGGTTCATTCTTGTTATTTATAGTGATCGGAATCTGTGACTCCATGTACAGCTCTTaGCATTCTTCATGCTGCAGT | + |
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Preference number: 2 (lower is better) Translates to: IITKLGSFLLFIVIGICDSMYSS*HSSCCS Trigger: ACTGCAGCATGAAGAATGCCAAGAGCTGTACATGGA...GTCACAGATTCCGATCACTATAAATAACAAGAATGAACCTAGTTTGGTGATGAT 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000022119.6 ENSMUST00000224449.2 |
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| 3UTR-3UTR GCA 90 bp | ATCATCACCAAACTAGGTTCATTCTTGTTATTTATAGTGATCGGAATCTGTGACGGTGATGTGAGATATTaGAGTCCCATTTCCATGTAC | + |
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Preference number: 2 (lower is better) Translates to: IITKLGSFLLFIVIGICDGDVRY*SPISMY Trigger: GTACATGGAAATGGGACTGCAATATCTCACATCACC...GTCACAGATTCCGATCACTATAAATAACAAGAATGAACCTAGTTTGGTGATGAT 38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000022119.6 ENSMUST00000224449.2 |
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| 3UTR-3UTR GCA 90 bp | CTAGGTTCATTCTTGTTATTTATAGTGATCGGAATCTGTGACATGTTTCTTCCATTCCAAACAGGCTTCTaGAGATGTCTTCTTTCTGAG | + |
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Preference number: 2 (lower is better) Translates to: LGSFLLFIVIGICDMFLPFQTGF*RCLLSE Trigger: CTCAGAAAGAAGACATCTGCAGAAGCCTGTTTGGAA...TGGAAGAAACATGTCACAGATTCCGATCACTATAAATAACAAGAATGAACCTAG 38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000022119.6 ENSMUST00000224449.2 |
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| 3UTR-3UTR TCA 90 bp | TCATTCTTGTTATTTATAGTGATCGGAATCTGTGACATGTTTCTTCCACACATGCAGATGTCTTCTTTCTaGGGAAAGAAATCTGTATCA | + |
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Preference number: 2 (lower is better) Translates to: SFLLFIVIGICDMFLPHMQMSSF*GKKSVS Trigger: TGATACAGATTTCTTTCCTCAGAAAGAAGACATCTG...CATGTGTGGAAGAAACATGTCACAGATTCCGATCACTATAAATAACAAGAATGA 36% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000022119.6 ENSMUST00000224449.2 |
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| 3UTR TCA 72 bp | AAAATGGTTGCCCAAGTATTGGATGTTCCTGCTGGGTaGTGGTATCCCACGGTCCCTGGAGCAGCCTCGGCT | + |
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Preference number: 3 (lower is better) Translates to: KMVAQVLDVPAG*WYPTVPGAASA Trigger: AGCCGAGGCTGCTCCAGGGACCGTGGGATACCATCACCCAGCAGGAACATCCAATACTTGGGCAACCATTTT 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000224449.2 |
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| 3UTR-3UTR CAA 90 bp | CACAAATACACTTCCCCATCAATCTCCACAGCAGGAGAACTGTGCCTAGGCAAATTCCATGTACAGCTCTaGGCATTCTTCATGCTGCAG | + |
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Preference number: 3 (lower is better) Translates to: HKYTSPSISTAGELCLGKFHVQL*AFFMLQ Trigger: CTGCAGCATGAAGAATGCCAAGAGCTGTACATGGAA...TTTGCCTAGGCACAGTTCTCCTGCTGTGGAGATTGATGGGGAAGTGTATTTGTG 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000022119.6 ENSMUST00000224449.2 |
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| 3UTR TCA 72 bp | ATTCAGACCAACCACTGGCCCCACGAGGCTCAGCCATaGTGTGATATAGTTGACATTTCTATTGATTTTCTG | + |
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Preference number: 3 (lower is better) Translates to: IQTNHWPHEAQP*CDIVDISIDFL Trigger: CAGAAAATCAATAGAAATGTCAACTATATCACATCATGGCTGAGCCTCGTGGGGCCAGTGGTTGGTCTGAAT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000224449.2 |
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| 3UTR TCA 72 bp | TCTGAGGAAAGAAATCTGTATCAAATCTTGGTGATGTaGGATATTGCAGTCCCATTTCCATGTACAGCTCTT | + |
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Preference number: 3 (lower is better) Translates to: SEERNLYQILVM*DIAVPFPCTAL Trigger: AAGAGCTGTACATGGAAATGGGACTGCAATATCTCACATCACCAAGATTTGATACAGATTTCTTTCCTCAGA 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000022119.6 ENSMUST00000224449.2 |
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| 3UTR TCA 72 bp | TCTATTCCAAACAGGCTTCTGCAGATGTCTTCTTTCTaGGGAAAGAAATCTGTATCAAATCTTGGTGATGTG | + |
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Preference number: 3 (lower is better) Translates to: SIPNRLLQMSSF*GKKSVSNLGDV Trigger: CACATCACCAAGATTTGATACAGATTTCTTTCCTCAGAAAGAAGACATCTGCAGAAGCCTGTTTGGAATAGA 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000022119.6 ENSMUST00000224449.2 |
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| 3UTR GCA 72 bp | AAGAAATCTGTATCAAATCTTGGTGATGTGAGATATTaGAGTCCCATTTCCATGTACAGCTCTTGGCATTCT | + |
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Preference number: 3 (lower is better) Translates to: KKSVSNLGDVRY*SPISMYSSWHS Trigger: AGAATGCCAAGAGCTGTACATGGAAATGGGACTGCAATATCTCACATCACCAAGATTTGATACAGATTTCTT 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000022119.6 ENSMUST00000224449.2 |
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| 3UTR TCA 72 bp | AGGTTCATTCTTGTTATTTATAGTGATCGGAATCTGTaGCATGTTTCTTCCACACATGTTCTATTCCAAACA | + |
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Preference number: 3 (lower is better) Translates to: RFILVIYSDRNL*HVSSTHVLFQT Trigger: TGTTTGGAATAGAACATGTGTGGAAGAAACATGTCACAGATTCCGATCACTATAAATAACAAGAATGAACCT 35% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000022119.6 ENSMUST00000224449.2 |
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| CDS-3UTR TCA 90 bp | ATCAATCTCCACAGCAGGAGAACTGTGCCTAGGCAAAAACGACCTGTGCACGCCATCGCCTATCTGCTGTaGATGTCTGATGAATTCTGC | + |
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Preference number: 4 (lower is better) Translates to: INLHSRRTVPRQKRPVHAIAYLL*MSDEFC Trigger: GCAGAATTCATCAGACATTCACAGCAGATAGGCGAT...GGCGTGCACAGGTCGTTTTTGCCTAGGCACAGTTCTCCTGCTGTGGAGATTGAT 50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000022119.6 ENSMUST00000224449.2 |
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| CDS-3UTR TCA 90 bp | ATCAATCTCCACAGCAGGAGAACTGTGCCTAGGCAAAAACGACCTGTGCACGCCCACGAGGCTCAGCCATaGTGTGATATAGTTGACATT | + |
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Preference number: 4 (lower is better) Translates to: INLHSRRTVPRQKRPVHAHEAQP*CDIVDI Trigger: AATGTCAACTATATCACATCATGGCTGAGCCTCGTG...GGCGTGCACAGGTCGTTTTTGCCTAGGCACAGTTCTCCTGCTGTGGAGATTGAT 50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000022119.6 |
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| CDS-3UTR CCA 90 bp | CCATTTCCATGTACAGCTCTTGGCATTCTTCATGCTGCAGTTTCTAAGATCAGCCATCAGAACATTCCTTaGCTGTTCTCCATTCCCAGC | + |
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Preference number: 4 (lower is better) Translates to: PFPCTALGILHAAVSKISHQNIP*LFSIPS Trigger: GCTGGGAATGGAGAACAGCCAAGGAATGTTCTGATG...GCTGATCTTAGAAACTGCAGCATGAAGAATGCCAAGAGCTGTACATGGAAATGG 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000022119.6 ENSMUST00000224449.2 |
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| CDS-3UTR CCA 90 bp | CATGTACAGCTCTTGGCATTCTTCATGCTGCAGTTTCTAAGATCAGCGGATCTTGAGCACACTGGCATGTaGTGTCAAGGTCTCATTCTT | + |
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Preference number: 4 (lower is better) Translates to: HVQLLAFFMLQFLRSADLEHTGM*CQGLIL Trigger: AAGAATGAGACCTTGACACCACATGCCAGTGTGCTC...AAGATCCGCTGATCTTAGAAACTGCAGCATGAAGAATGCCAAGAGCTGTACATG 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000022119.6 ENSMUST00000224449.2 |
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| CDS-3UTR GCA 90 bp | CCATTTCCATGTACAGCTCTTGGCATTCTTCATGCTGCAGTTTCTAAGATCAGCCAGCCATCGCCTATCTaGTGTGAATGTCTGATGAAT | + |
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Preference number: 4 (lower is better) Translates to: PFPCTALGILHAAVSKISQPSPI*CECLMN Trigger: ATTCATCAGACATTCACAGCAGATAGGCGATGGCTG...GCTGATCTTAGAAACTGCAGCATGAAGAATGCCAAGAGCTGTACATGGAAATGG 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000022119.6 ENSMUST00000224449.2 |
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| 3UTR CAA 72 bp | TGTGAGATATTGCAGTCCCATTTCCATGTACAGCTCTaGGCATTCTTCATGCTGCAGTTTCTAAGATCAGCG | + |
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Preference number: 4 (lower is better) Translates to: CEILQSHFHVQL*AFFMLQFLRSA Trigger: CGCTGATCTTAGAAACTGCAGCATGAAGAATGCCAAGAGCTGTACATGGAAATGGGACTGCAATATCTCACA 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000022119.6 ENSMUST00000224449.2 |
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| CDS-3UTR GCA 90 bp | CCATTTCCATGTACAGCTCTTGGCATTCTTCATGCTGCAGTTTCTAAGATCAGCTTCGAAACTGTGTTTTaGACATGTAGCCATCAGAAC | + |
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Preference number: 4 (lower is better) Translates to: PFPCTALGILHAAVSKISFETVF*TCSHQN Trigger: GTTCTGATGGCTACATGTGCAAAACACAGTTTCGAA...GCTGATCTTAGAAACTGCAGCATGAAGAATGCCAAGAGCTGTACATGGAAATGG 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000022119.6 ENSMUST00000224449.2 |
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| CDS-3UTR TCA 90 bp | CATGTTCTATTCCAAACAGGCTTCTGCAGATGTCTTCTTTCTGAGGAAAGAAATATCGCCTATCTGCTGTaGATGTCTGATGAATTCTGC | + |
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Preference number: 4 (lower is better) Translates to: HVLFQTGFCRCLLSEERNIAYLL*MSDEFC Trigger: GCAGAATTCATCAGACATTCACAGCAGATAGGCGAT...ATTTCTTTCCTCAGAAAGAAGACATCTGCAGAAGCCTGTTTGGAATAGAACATG 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000022119.6 ENSMUST00000224449.2 |
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| CDS-3UTR GCA 90 bp | CATGTACAGCTCTTGGCATTCTTCATGCTGCAGTTTCTAAGATCAGCGGATCTTATGTCTGATGAATTCTaGACAATAATGCTGGAAGCT | + |
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Preference number: 4 (lower is better) Translates to: HVQLLAFFMLQFLRSADLMSDEF*TIMLEA Trigger: AGCTTCCAGCATTATTGTGCAGAATTCATCAGACAT...AAGATCCGCTGATCTTAGAAACTGCAGCATGAAGAATGCCAAGAGCTGTACATG 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000022119.6 ENSMUST00000224449.2 |
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| CDS-3UTR GCA 90 bp | TTCTATTCCAAACAGGCTTCTGCAGATGTCTTCTTTCTGAGGAAAGAAATCTGTCAGCCATCGCCTATCTaGTGTGAATGTCTGATGAAT | + |
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Preference number: 4 (lower is better) Translates to: FYSKQASADVFFLRKEICQPSPI*CECLMN Trigger: ATTCATCAGACATTCACAGCAGATAGGCGATGGCTG...ACAGATTTCTTTCCTCAGAAAGAAGACATCTGCAGAAGCCTGTTTGGAATAGAA 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000022119.6 ENSMUST00000224449.2 |
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| CDS-3UTR CCA 90 bp | ATTTTCTGTGAATTCTTTAGCACAGCAGTCATGAATTCATTTGTCTTGCAGGGAGAGCACACTGGCATGTaGTGTCAAGGTCTCATTCTT | + |
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Preference number: 4 (lower is better) Translates to: IFCEFFSTAVMNSFVLQGEHTGM*CQGLIL Trigger: AAGAATGAGACCTTGACACCACATGCCAGTGTGCTC...TCCCTGCAAGACAAATGAATTCATGACTGCTGTGCTAAAGAATTCACAGAAAAT 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000224449.2 |
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| CDS-3UTR TCA 90 bp | TTCTATTCCAAACAGGCTTCTGCAGATGTCTTCTTTCTGAGGAAAGAAATCTGTTTAGCACAGCAGTCATaGATTCATTTGTCTTGCAGG | + |
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Preference number: 4 (lower is better) Translates to: FYSKQASADVFFLRKEICLAQQS*IHLSCR Trigger: CCTGCAAGACAAATGAATTCATGACTGCTGTGCTAA...ACAGATTTCTTTCCTCAGAAAGAAGACATCTGCAGAAGCCTGTTTGGAATAGAA 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000022119.6 |
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| CDS-3UTR CCA 90 bp | CTAGGTTCATTCTTGTTATTTATAGTGATCGGAATCTGTGACATGTTTCTTCCACATCAGAACATTCCTTaGCTGTTCTCCATTCCCAGC | + |
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Preference number: 4 (lower is better) Translates to: LGSFLLFIVIGICDMFLPHQNIP*LFSIPS Trigger: GCTGGGAATGGAGAACAGCCAAGGAATGTTCTGATG...TGGAAGAAACATGTCACAGATTCCGATCACTATAAATAACAAGAATGAACCTAG 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000022119.6 ENSMUST00000224449.2 |
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| CDS-3UTR CCA 90 bp | CTAGGTTCATTCTTGTTATTTATAGTGATCGGAATCTGTGACATGTTTCTTCCATGGTTGCCCAAGTATTaGATGTTCCTGCTGGGTGAT | + |
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Preference number: 4 (lower is better) Translates to: LGSFLLFIVIGICDMFLPWLPKY*MFLLGD Trigger: ATCACCCAGCAGGAACATCCAATACTTGGGCAACCA...TGGAAGAAACATGTCACAGATTCCGATCACTATAAATAACAAGAATGAACCTAG 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000022119.6 |
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| CDS-3UTR GCA 90 bp | TTCTATTCCAAACAGGCTTCTGCAGATGTCTTCTTTCTGAGGAAAGAAATCTGTATGTCTGATGAATTCTaGACAATAATGCTGGAAGCT | + |
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Preference number: 4 (lower is better) Translates to: FYSKQASADVFFLRKEICMSDEF*TIMLEA Trigger: AGCTTCCAGCATTATTGTGCAGAATTCATCAGACAT...ACAGATTTCTTTCCTCAGAAAGAAGACATCTGCAGAAGCCTGTTTGGAATAGAA 38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000022119.6 ENSMUST00000224449.2 |
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| 3UTR CAA 72 bp | GTCAGAAATGACATCATCACCAAACTAGGTTCATTCTaGTTATTTATAGTGATCGGAATCTGTGACATGTTT | + |
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Preference number: 4 (lower is better) Translates to: VRNDIITKLGSF*LFIVIGICDMF Trigger: AAACATGTCACAGATTCCGATCACTATAAATAACAAGAATGAACCTAGTTTGGTGATGATGTCATTTCTGAC 35% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000022119.6 ENSMUST00000224449.2 |
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| CDS GCA 90 bp | TGGCATGTGGTGTCAAGGTCTCATTCTTTATTCGAAACTGTGTTTTaGACATGTAGCCATCAGAACATTCCTTGGCTGTTCTCCATTCCC | + |
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Preference number: 5 (lower is better) Translates to: WHVVSRSHSLFETVF*TCSHQNIPWLFSIP Trigger: GGGAATGGAGAACAGCCAAGGAATGTTCTGATGGCTACATGTGCAAAACACAGTTTCGAATAAAGAATGAGACCTTGACACCACATGCCA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000022119.6 ENSMUST00000224449.2 |
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| CDS-3UTR CAA 90 bp | TTCTATTCCAAACAGGCTTCTGCAGATGTCTTCTTTCTGAGGAAAGAAATCTGTCCATCAGAACATTCCTaGGCTGTTCTCCATTCCCAG | + |
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Preference number: 5 (lower is better) Translates to: FYSKQASADVFFLRKEICPSEHS*AVLHSQ Trigger: CTGGGAATGGAGAACAGCCAAGGAATGTTCTGATGG...ACAGATTTCTTTCCTCAGAAAGAAGACATCTGCAGAAGCCTGTTTGGAATAGAA 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000022119.6 ENSMUST00000224449.2 |
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| CDS-3UTR CAA 90 bp | CCATGTACAGCTCTTGGCATTCTTCATGCTGCAGTTTCTAAGATCAGCGGATCTCTTCAGAATCATCCATaGGTAGCTCTAAATTCTCCT | + |
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Preference number: 5 (lower is better) Translates to: PCTALGILHAAVSKISGSLQNHP*VALNSP Trigger: AGGAGAATTTAGAGCTACCAATGGATGATTCTGAAG...AGATCCGCTGATCTTAGAAACTGCAGCATGAAGAATGCCAAGAGCTGTACATGG 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000022119.6 |
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| CDS-3UTR CAA 90 bp | CTAGGTTCATTCTTGTTATTTATAGTGATCGGAATCTGTGACATGTTTCTTCCACCATCAGAACATTCCTaGGCTGTTCTCCATTCCCAG | + |
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Preference number: 5 (lower is better) Translates to: LGSFLLFIVIGICDMFLPPSEHS*AVLHSQ Trigger: CTGGGAATGGAGAACAGCCAAGGAATGTTCTGATGG...TGGAAGAAACATGTCACAGATTCCGATCACTATAAATAACAAGAATGAACCTAG 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000022119.6 ENSMUST00000224449.2 |
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| CDS TCA 72 bp | GGCTGTTCTCCATTCCCAGCCATCGCCTATCTGCTGTaGATGTCTGATGAATTCTGCACAATAATGCTGGAA | + |
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Preference number: 6 (lower is better) Translates to: GCSPFPAIAYLL*MSDEFCTIMLE Trigger: TTCCAGCATTATTGTGCAGAATTCATCAGACATTCACAGCAGATAGGCGATGGCTGGGAATGGAGAACAGCC 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000022119.6 ENSMUST00000224449.2 |
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| CDS CCA 72 bp | CTCCTCTGTAGGGAGACATGTGAGCACACTGGCATGTaGTGTCAAGGTCTCATTCTTTATTCGAAACTGTGT | + |
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Preference number: 6 (lower is better) Translates to: LLCRETCEHTGM*CQGLILYSKLC Trigger: ACACAGTTTCGAATAAAGAATGAGACCTTGACACCACATGCCAGTGTGCTCACATGTCTCCCTACAGAGGAG 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000022119.6 |
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| CDS CCA 72 bp | CATCTCTGTAGGGAGACATGTGAGCACACTGGCATGTaGTGTCAAGGTCTCATTCTTTATTCGAAACTGTGT | + |
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Preference number: 6 (lower is better) Translates to: HLCRETCEHTGM*CQGLILYSKLC Trigger: ACACAGTTTCGAATAAAGAATGAGACCTTGACACCACATGCCAGTGTGCTCACATGTCTCCCTACAGAGATG 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000224449.2 |
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| CDS GCA 72 bp | GTGTCAAGGTCTCATTCTTTATTCGAAACTGTGTTTTaGACATGTAGCCATCAGAACATTCCTTGGCTGTTC | + |
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Preference number: 6 (lower is better) Translates to: VSRSHSLFETVF*TCSHQNIPWLF Trigger: GAACAGCCAAGGAATGTTCTGATGGCTACATGTGCAAAACACAGTTTCGAATAAAGAATGAGACCTTGACAC 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000022119.6 ENSMUST00000224449.2 |
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