Pregenerated sensors for ATF5 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000038539Ensembl transcript IDs: ENSMUST00000047356.11, ENSMUST00000107893.9, ENSMUST00000209072.2
Found 39 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR TCA 90 bp | CTTCTCACTTGTGTTCCAAGTCCCCTCCTTAAAACCCTCCCTCCCTaGCTAGGTTCTCATCTGCCATCACCCAGAGTGGCTTCCTGCTTT | + |
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Preference number: 1 (lower is better) Translates to: LLTCVPSPLLKTLPP*LGSHLPSPRVASCF Trigger: AAAGCAGGAAGCCACTCTGGGTGATGGCAGATGAGAACCTAGTCAGGGAGGGAGGGTTTTAAGGAGGGGACTTGGAACACAAGTGAGAAG 52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000047356.11 ENSMUST00000107893.9 |
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| 3UTR-3UTR CCA 90 bp | GAGGCCAGGGATCAGGCTGGCTCCTCCTCCAGTTCCCTGAGGGCCTTGCTTTCTAGCCTAGAGATGGACTaGATAGGAAAGTGGAATGGA | + |
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Preference number: 2 (lower is better) Translates to: EARDQAGSSSSSLRALLSSLEMD*IGKWNG Trigger: TCCATTCCACTTTCCTATCCAGTCCATCTCTAGGCT...AGAAAGCAAGGCCCTCAGGGAACTGGAGGAGGAGCCAGCCTGATCCCTGGCCTC 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000047356.11 ENSMUST00000107893.9 |
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| 3UTR-3UTR TCA 90 bp | CTACACCCAACTAGGACTACCTGCAAAAACACACTTGCTTTAAGACTCCAGAGGCCTCCTCCAGTTCCCTaGGGGCCTTGCTTTCTCAGT | + |
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Preference number: 2 (lower is better) Translates to: LHPTRTTCKNTLALRLQRPPPVP*GPCFLS Trigger: ACTGAGAAAGCAAGGCCCTCAGGGAACTGGAGGAGG...CCTCTGGAGTCTTAAAGCAAGTGTGTTTTTGCAGGTAGTCCTAGTTGGGTGTAG 51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000047356.11 ENSMUST00000107893.9 |
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| 3UTR-3UTR CCA 90 bp | CTGGCAGCCTCCCCCTACACCCAACTAGGACTACCTGCAAAAACACACTTGCTTAGCCTAGAGATGGACTaGATAGGAAAGTGGAATGGA | + |
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Preference number: 2 (lower is better) Translates to: LAASPYTQLGLPAKTHLLSLEMD*IGKWNG Trigger: TCCATTCCACTTTCCTATCCAGTCCATCTCTAGGCT...AAGCAAGTGTGTTTTTGCAGGTAGTCCTAGTTGGGTGTAGGGGGAGGCTGCCAG 50% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 2 transcripts: ENSMUST00000047356.11 ENSMUST00000107893.9 |
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| 3UTR GCA 72 bp | CTAGGTTCTCATCTGCCATCACCCAGAGTGGCTTCCTaGTTTATGTTCATGCCAGGCCTGGCAGCCTCCCCC | + |
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Preference number: 3 (lower is better) Translates to: LGSHLPSPRVAS*FMFMPGLAASP Trigger: GGGGGAGGCTGCCAGGCCTGGCATGAACATAAAGCAGGAAGCCACTCTGGGTGATGGCAGATGAGAACCTAG 58% GC, longest homopolymer 5 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000047356.11 ENSMUST00000107893.9 |
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| 3UTR TCA 72 bp | TGTGTTCCAAGTCCCCTCCTTAAAACCCTCCCTCCCTaGCTAGGTTCTCATCTGCCATCACCCAGAGTGGCT | + |
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Preference number: 3 (lower is better) Translates to: CVPSPLLKTLPP*LGSHLPSPRVA Trigger: AGCCACTCTGGGTGATGGCAGATGAGAACCTAGTCAGGGAGGGAGGGTTTTAAGGAGGGGACTTGGAACACA 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000047356.11 ENSMUST00000107893.9 |
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| 3UTR CCA 72 bp | GGGAAGCCTAGAGATGGACTGGATAGGAAAGTGGAATaGAGGGGTAGTGTGACGCTGGAGACAGACGTACAC | + |
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Preference number: 3 (lower is better) Translates to: GKPRDGLDRKVE*RGSVTLETDVH Trigger: GTGTACGTCTGTCTCCAGCGTCACACTACCCCTCCATTCCACTTTCCTATCCAGTCCATCTCTAGGCTTCCC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000047356.11 ENSMUST00000107893.9 |
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| CDS-3UTR CCA 90 bp | GGAGGAGGCTGCTGTGGGACAGGCAGGGTTGACAAGCCTGAATCCCCCGGCCCGGCCCAGCCCGCTAGCTaGGAGCAGGGCCCTGTCCAG | + |
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Preference number: 4 (lower is better) Translates to: GGGCCGTGRVDKPESPGPAQPAS*EQGPVQ Trigger: CTGGACAGGGCCCTGCTCCCAGCTAGCGGGCTGGGC...CGGGCCGGGGGATTCAGGCTTGTCAACCCTGCCTGTCCCACAGCAGCCTCCTCC 70% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000209072.2 |
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| CDS-3UTR CCA 90 bp | AGGGATCAGGCTGGCTCCTCCTCCAGTTCCCTGAGGGCCTTGCTTTCTCAGTTGGCCCAGCCCGCTAGCTaGGAGCAGGGCCCTGTCCAG | + |
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Preference number: 4 (lower is better) Translates to: RDQAGSSSSSLRALLSQLAQPAS*EQGPVQ Trigger: CTGGACAGGGCCCTGCTCCCAGCTAGCGGGCTGGGC...CAACTGAGAAAGCAAGGCCCTCAGGGAACTGGAGGAGGAGCCAGCCTGATCCCT 64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000047356.11 ENSMUST00000107893.9 |
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| CDS-3UTR TCA 90 bp | CTGGCAGCCTCCCCCTACACCCAACTAGGACTACCTGCAAAAACACACTTGCTTGGCTGGGCGGGCGGGTaGAGGCAGAGGGGCCAGAGG | + |
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Preference number: 4 (lower is better) Translates to: LAASPYTQLGLPAKTHLLGWAGG*RQRGQR Trigger: CCTCTGGCCCCTCTGCCTTCACCCGCCCGCCCAGCC...AAGCAAGTGTGTTTTTGCAGGTAGTCCTAGTTGGGTGTAGGGGGAGGCTGCCAG 63% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt. Matches the following 2 transcripts: ENSMUST00000047356.11 ENSMUST00000107893.9 |
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| CDS-3UTR TCA 90 bp | GAGGCCAGGGATCAGGCTGGCTCCTCCTCCAGTTCCCTGAGGGCCTTGCTTTCTGATCTCCCGCTCCACTaGCTCAGCCCTCTCCCTCAG | + |
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Preference number: 4 (lower is better) Translates to: EARDQAGSSSSSLRALLSDLPLH*LSPLPQ Trigger: CTGAGGGAGAGGGCTGAGTCAGTGGAGCGGGAGATC...AGAAAGCAAGGCCCTCAGGGAACTGGAGGAGGAGCCAGCCTGATCCCTGGCCTC 63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000047356.11 ENSMUST00000107893.9 |
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| CDS-3UTR CCA 90 bp | CTGCTTTATGTTCATGCCAGGCCTGGCAGCCTCCCCCTACACCCAACTAGGACTGCCCAGCCCGCTAGCTaGGAGCAGGGCCCTGTCCAG | + |
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Preference number: 4 (lower is better) Translates to: LLYVHARPGSLPLHPTRTAQPAS*EQGPVQ Trigger: CTGGACAGGGCCCTGCTCCCAGCTAGCGGGCTGGGC...AGTCCTAGTTGGGTGTAGGGGGAGGCTGCCAGGCCTGGCATGAACATAAAGCAG 63% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000047356.11 ENSMUST00000107893.9 |
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| CDS-3UTR TCA 90 bp | CAGGGATCAGGCTGGCTCCTCCTCCAGTTCCCTGAGGGCCTTGCTTTCTCAGTTGATCTCCCGCTCCACTaGCTCAGCCCTCTCCCTCAG | + |
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Preference number: 4 (lower is better) Translates to: QGSGWLLLQFPEGLAFSVDLPLH*LSPLPQ Trigger: CTGAGGGAGAGGGCTGAGTCAGTGGAGCGGGAGATC...AACTGAGAAAGCAAGGCCCTCAGGGAACTGGAGGAGGAGCCAGCCTGATCCCTG 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000047356.11 ENSMUST00000107893.9 |
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| CDS-3UTR GCA 90 bp | GGGGTACAGAAACTGACTCTGCCAAATAGCCCACAGTGGGTTAGGCAGAGGGGACAGGGCCTCGCCCTCTaGCCGCTTCCTCTGGCGGTA | + |
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Preference number: 4 (lower is better) Translates to: GVQKLTLPNSPQWVRQRGQGLAL*PLPLAV Trigger: TACCGCCAGAGGAAGCGGGCAGAGGGCGAGGCCCTG...TCCCCTCTGCCTAACCCACTGTGGGCTATTTGGCAGAGTCAGTTTCTGTACCCC 61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000047356.11 ENSMUST00000107893.9 |
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| CDS-3UTR GCA 90 bp | GAGGCCAGGGATCAGGCTGGCTCCTCCTCCAGTTCCCTGAGGGCCTTGCTTTCTCTCTCTTCTTTTGCTTaGGGTCCCCTCGTGTGCTGG | + |
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Preference number: 4 (lower is better) Translates to: EARDQAGSSSSSLRALLSLSSFA*GPLVCW Trigger: CCAGCACACGAGGGGACCGCAAGCAAAAGAAGAGAG...AGAAAGCAAGGCCCTCAGGGAACTGGAGGAGGAGCCAGCCTGATCCCTGGCCTC 60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000047356.11 ENSMUST00000107893.9 |
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| CDS-3UTR GCA 90 bp | GGACTGGATAGGAAAGTGGAATGGAGGGGTAGTGTGACGCTGGAGACAGACGTACAGGGCCTCGCCCTCTaGCCGCTTCCTCTGGCGGTA | + |
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Preference number: 4 (lower is better) Translates to: GLDRKVEWRGSVTLETDVQGLAL*PLPLAV Trigger: TACCGCCAGAGGAAGCGGGCAGAGGGCGAGGCCCTG...TACGTCTGTCTCCAGCGTCACACTACCCCTCCATTCCACTTTCCTATCCAGTCC 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000047356.11 ENSMUST00000107893.9 |
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| CDS-3UTR CCA 90 bp | AGGGATCAGGCTGGCTCCTCCTCCAGTTCCCTGAGGGCCTTGCTTTCTCAGTTGTCTGCCCGCTTCCTCTaGCGGTACCTGAGAGCAGCT | + |
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Preference number: 4 (lower is better) Translates to: RDQAGSSSSSLRALLSQLSARFL*RYLRAA Trigger: AGCTGCTCTCAGGTACCGCCAGAGGAAGCGGGCAGA...CAACTGAGAAAGCAAGGCCCTCAGGGAACTGGAGGAGGAGCCAGCCTGATCCCT 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000047356.11 ENSMUST00000107893.9 |
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| CDS-3UTR TCA 90 bp | GTTCATGCCAGGCCTGGCAGCCTCCCCCTACACCCAACTAGGACTACCTGCAAAGAGGAAGGAGAGCTGTaGAGTCCACCCGCTCAGTCA | + |
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Preference number: 4 (lower is better) Translates to: VHARPGSLPLHPTRTTCKEEGEL*SPPAQS Trigger: TGACTGAGCGGGTGGACTTCACAGCTCTCCTTCCTC...TTTGCAGGTAGTCCTAGTTGGGTGTAGGGGGAGGCTGCCAGGCCTGGCATGAAC 59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000047356.11 ENSMUST00000107893.9 |
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| CDS-3UTR TCA 90 bp | GAGGCCAGGGATCAGGCTGGCTCCTCCTCCAGTTCCCTGAGGGCCTTGCTTTCTGTTCCAGCTCCTTCTTaGGTAGGGATGCCATGGCTT | + |
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Preference number: 4 (lower is better) Translates to: EARDQAGSSSSSLRALLSVPAPS*VGMPWL Trigger: AAGCCATGGCATCCCTACTCAAGAAGGAGCTGGAAC...AGAAAGCAAGGCCCTCAGGGAACTGGAGGAGGAGCCAGCCTGATCCCTGGCCTC 59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000047356.11 ENSMUST00000107893.9 |
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| CDS-3UTR TCA 90 bp | CTGACTCTGCCAAATAGCCCACAGTGGGTTAGGCAGAGGGGAAGCCTAGAGATGTCCAGGGTAGGAGGCTaGGGGAGGTCAAAGGTGGGC | + |
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Preference number: 4 (lower is better) Translates to: LTLPNSPQWVRQRGSLEMSRVGG*GRSKVG Trigger: GCCCACCTTTGACCTCCCTCAGCCTCCTACCCTGGA...CATCTCTAGGCTTCCCCTCTGCCTAACCCACTGTGGGCTATTTGGCAGAGTCAG 59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000047356.11 ENSMUST00000107893.9 |
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| CDS-3UTR TCA 90 bp | CTACACCCAACTAGGACTACCTGCAAAAACACACTTGCTTTAAGACTCCAGAGGGGCTGGGCGGGCGGGTaGAGGCAGAGGGGCCAGAGG | + |
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Preference number: 4 (lower is better) Translates to: LHPTRTTCKNTLALRLQRGWAGG*RQRGQR Trigger: CCTCTGGCCCCTCTGCCTTCACCCGCCCGCCCAGCC...CCTCTGGAGTCTTAAAGCAAGTGTGTTTTTGCAGGTAGTCCTAGTTGGGTGTAG 59% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 2 transcripts: ENSMUST00000047356.11 ENSMUST00000107893.9 |
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| CDS-3UTR TCA 90 bp | CTGCTTTATGTTCATGCCAGGCCTGGCAGCCTCCCCCTACACCCAACTAGGACTGAGGAAGGAGAGCTGTaGAGTCCACCCGCTCAGTCA | + |
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Preference number: 4 (lower is better) Translates to: LLYVHARPGSLPLHPTRTEEGEL*SPPAQS Trigger: TGACTGAGCGGGTGGACTTCACAGCTCTCCTTCCTC...AGTCCTAGTTGGGTGTAGGGGGAGGCTGCCAGGCCTGGCATGAACATAAAGCAG 58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000047356.11 ENSMUST00000107893.9 |
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| CDS-3UTR GCA 90 bp | GGACTGGATAGGAAAGTGGAATGGAGGGGTAGTGTGACGCTGGAGACAGACGTAGCCAGAGGAGGAGGCTaGTGTGGGACAGGCAGGGTT | + |
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Preference number: 4 (lower is better) Translates to: GLDRKVEWRGSVTLETDVARGGG*CGTGRV Trigger: AACCCTGCCTGTCCCACAGCAGCCTCCTCCTCTGGC...TACGTCTGTCTCCAGCGTCACACTACCCCTCCATTCCACTTTCCTATCCAGTCC 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000047356.11 ENSMUST00000107893.9 |
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| CDS-3UTR GCA 90 bp | AGGGATCAGGCTGGCTCCTCCTCCAGTTCCCTGAGGGCCTTGCTTTCTCAGTTGCTCTCTTCTTTTGCTTaGGGTCCCCTCGTGTGCTGG | + |
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Preference number: 4 (lower is better) Translates to: RDQAGSSSSSLRALLSQLLSSFA*GPLVCW Trigger: CCAGCACACGAGGGGACCGCAAGCAAAAGAAGAGAG...CAACTGAGAAAGCAAGGCCCTCAGGGAACTGGAGGAGGAGCCAGCCTGATCCCT 58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000047356.11 ENSMUST00000107893.9 |
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| CDS-3UTR CCA 90 bp | CTGACTCTGCCAAATAGCCCACAGTGGGTTAGGCAGAGGGGAAGCCTAGAGATGTCTGCCCGCTTCCTCTaGCGGTACCTGAGAGCAGCT | + |
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Preference number: 4 (lower is better) Translates to: LTLPNSPQWVRQRGSLEMSARFL*RYLRAA Trigger: AGCTGCTCTCAGGTACCGCCAGAGGAAGCGGGCAGA...CATCTCTAGGCTTCCCCTCTGCCTAACCCACTGTGGGCTATTTGGCAGAGTCAG 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000047356.11 ENSMUST00000107893.9 |
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| CDS-3UTR GCA 90 bp | CTGCTTTATGTTCATGCCAGGCCTGGCAGCCTCCCCCTACACCCAACTAGGACTTGGTCTCTCTTCTTTTaGTTGCGGTCCCCTCGTGTG | + |
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Preference number: 4 (lower is better) Translates to: LLYVHARPGSLPLHPTRTWSLFF*LRSPRV Trigger: CACACGAGGGGACCGCAAGCAAAAGAAGAGAGACCA...AGTCCTAGTTGGGTGTAGGGGGAGGCTGCCAGGCCTGGCATGAACATAAAGCAG 56% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 2 transcripts: ENSMUST00000047356.11 ENSMUST00000107893.9 |
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| CDS-3UTR TCA 90 bp | GTTCATGCCAGGCCTGGCAGCCTCCCCCTACACCCAACTAGGACTACCTGCAAAGTACCTGAGAGCAGCTaGCTTATTCTGGTCTCTCTT | + |
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Preference number: 4 (lower is better) Translates to: VHARPGSLPLHPTRTTCKVPESS*LILVSL Trigger: AAGAGAGACCAGAATAAGTCAGCTGCTCTCAGGTAC...TTTGCAGGTAGTCCTAGTTGGGTGTAGGGGGAGGCTGCCAGGCCTGGCATGAAC 54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000047356.11 ENSMUST00000107893.9 |
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| CDS-3UTR GCA 90 bp | CTACACCCAACTAGGACTACCTGCAAAAACACACTTGCTTTAAGACTCCAGAGGGCCAGAGGAGGAGGCTaGTGTGGGACAGGCAGGGTT | + |
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Preference number: 4 (lower is better) Translates to: LHPTRTTCKNTLALRLQRARGGG*CGTGRV Trigger: AACCCTGCCTGTCCCACAGCAGCCTCCTCCTCTGGC...CCTCTGGAGTCTTAAAGCAAGTGTGTTTTTGCAGGTAGTCCTAGTTGGGTGTAG 53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000047356.11 ENSMUST00000107893.9 |
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| CDS-3UTR TCA 90 bp | ACTGAAGGGGTACAGAAACTGACTCTGCCAAATAGCCCACAGTGGGTTAGGCAGGTTCCAGCTCCTTCTTaGGTAGGGATGCCATGGCTT | + |
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Preference number: 4 (lower is better) Translates to: TEGVQKLTLPNSPQWVRQVPAPS*VGMPWL Trigger: AAGCCATGGCATCCCTACTCAAGAAGGAGCTGGAAC...CTGCCTAACCCACTGTGGGCTATTTGGCAGAGTCAGTTTCTGTACCCCTTCAGT 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000047356.11 ENSMUST00000107893.9 |
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| CDS-3UTR TCA 90 bp | TGCTTTATGTTCATGCCAGGCCTGGCAGCCTCCCCCTACACCCAACTAGGACTAGTACCTGAGAGCAGCTaGCTTATTCTGGTCTCTCTT | + |
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Preference number: 4 (lower is better) Translates to: CFMFMPGLAASPYTQLGLVPESS*LILVSL Trigger: AAGAGAGACCAGAATAAGTCAGCTGCTCTCAGGTAC...TAGTCCTAGTTGGGTGTAGGGGGAGGCTGCCAGGCCTGGCATGAACATAAAGCA 52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000047356.11 ENSMUST00000107893.9 |
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| CDS-3UTR CAA 90 bp | GAGGCCAGGGATCAGGCTGGCTCCTCCTCCAGTTCCCTGAGGGCCTTGCTTTCTCTGGTCTCTCTTCTTTaGCTTGCGGTCCCCTCGTGT | + |
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Preference number: 5 (lower is better) Translates to: EARDQAGSSSSSLRALLSLVSLL*LAVPSC Trigger: ACACGAGGGGACCGCAAGCAAAAGAAGAGAGACCAG...AGAAAGCAAGGCCCTCAGGGAACTGGAGGAGGAGCCAGCCTGATCCCTGGCCTC 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000047356.11 ENSMUST00000107893.9 |
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| CDS CCA 90 bp | TCTGCCCGCTTCCTCTGGCGGTACCTGAGAGCAGCTGACTTATTCTaGTCTCTCTTCTTTTGCTTGCGGTCCCCTCGTGTGCTGGCAGGA | + |
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Preference number: 5 (lower is better) Translates to: SARFLWRYLRAADLF*SLFFCLRSPRVLAG Trigger: TCCTGCCAGCACACGAGGGGACCGCAAGCAAAAGAAGAGAGACCAGAATAAGTCAGCTGCTCTCAGGTACCGCCAGAGGAAGCGGGCAGA 58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000047356.11 ENSMUST00000107893.9 |
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| CDS-3UTR CAA 90 bp | AGGGATCAGGCTGGCTCCTCCTCCAGTTCCCTGAGGGCCTTGCTTTCTCAGTTGTCTCTCTTCTTTTGCTaGCGGTCCCCTCGTGTGCTG | + |
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Preference number: 5 (lower is better) Translates to: RDQAGSSSSSLRALLSQLSLFFC*RSPRVL Trigger: CAGCACACGAGGGGACCGCAAGCAAAAGAAGAGAGA...CAACTGAGAAAGCAAGGCCCTCAGGGAACTGGAGGAGGAGCCAGCCTGATCCCT 58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000047356.11 ENSMUST00000107893.9 |
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| CDS-3UTR CAA 90 bp | GAGGGGAAGCCTAGAGATGGACTGGATAGGAAAGTGGAATGGAGGGGTAGTGTGTGTTCCAGCTCCTTCTaGAGTAGGGATGCCATGGCT | + |
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Preference number: 5 (lower is better) Translates to: EGKPRDGLDRKVEWRGSVCSSSF*SRDAMA Trigger: AGCCATGGCATCCCTACTCAAGAAGGAGCTGGAACA...CACACTACCCCTCCATTCCACTTTCCTATCCAGTCCATCTCTAGGCTTCCCCTC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000047356.11 ENSMUST00000107893.9 |
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| CDS-3UTR CAA 90 bp | GGACTGGATAGGAAAGTGGAATGGAGGGGTAGTGTGACGCTGGAGACAGACGTATGTTCCAGCTCCTTCTaGAGTAGGGATGCCATGGCT | + |
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Preference number: 5 (lower is better) Translates to: GLDRKVEWRGSVTLETDVCSSSF*SRDAMA Trigger: AGCCATGGCATCCCTACTCAAGAAGGAGCTGGAACA...TACGTCTGTCTCCAGCGTCACACTACCCCTCCATTCCACTTTCCTATCCAGTCC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000047356.11 ENSMUST00000107893.9 |
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| CDS-3UTR CAA 90 bp | ACTGAAGGGGTACAGAAACTGACTCTGCCAAATAGCCCACAGTGGGTTAGGCAGTCTCTCTTCTTTTGCTaGCGGTCCCCTCGTGTGCTG | + |
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Preference number: 5 (lower is better) Translates to: TEGVQKLTLPNSPQWVRQSLFFC*RSPRVL Trigger: CAGCACACGAGGGGACCGCAAGCAAAAGAAGAGAGA...CTGCCTAACCCACTGTGGGCTATTTGGCAGAGTCAGTTTCTGTACCCCTTCAGT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 2 transcripts: ENSMUST00000047356.11 ENSMUST00000107893.9 |
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| CDS CCA 72 bp | TCGCCCTCCAGGGCCTCGCCCTCTGCCCGCTTCCTCTaGCGGTACCTGAGAGCAGCTGACTTATTCTGGTCT | + |
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Preference number: 6 (lower is better) Translates to: SPSRASPSARFL*RYLRAADLFWS Trigger: AGACCAGAATAAGTCAGCTGCTCTCAGGTACCGCCAGAGGAAGCGGGCAGAGGGCGAGGCCCTGGAGGGCGA 64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000047356.11 ENSMUST00000107893.9 |
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| CDS CCA 72 bp | GCCTTATACACCTCAATTAGCAGGTCCTTCACGTACTaGATCTCCCGCTCCACTGACTCAGCCCTCTCCCTC | + |
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Preference number: 6 (lower is better) Translates to: ALYTSISRSFTY*ISRSTDSALSL Trigger: GAGGGAGAGGGCTGAGTCAGTGGAGCGGGAGATCCAGTACGTGAAGGACCTGCTAATTGAGGTGTATAAGGC 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000047356.11 ENSMUST00000107893.9 |
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| CDS CCA 72 bp | TTCCTCTGGCGGTACCTGAGAGCAGCTGACTTATTCTaGTCTCTCTTCTTTTGCTTGCGGTCCCCTCGTGTG | + |
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Preference number: 6 (lower is better) Translates to: FLWRYLRAADLF*SLFFCLRSPRV Trigger: CACACGAGGGGACCGCAAGCAAAAGAAGAGAGACCAGAATAAGTCAGCTGCTCTCAGGTACCGCCAGAGGAA 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000047356.11 ENSMUST00000107893.9 |
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