Pregenerated sensors for ATF4 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000042406Ensembl transcript IDs: ENSMUST00000109605.5
Found 13 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS-3UTR CCA 90 bp | TACAGCAAACACAGCAACACAAGACTATGTACAAGCACAAAGCACCTGACTACCAGGCAGATTGTCTGGTaGGGCCCTGGAGGTGGAGGG | + |
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Preference number: 4 (lower is better) Translates to: YSKHSNTRLCTSTKHLTTRQIVW*GPGGGG Trigger: CCCTCCACCTCCAGGGCCCCACCAGACAATCTGCCT...GGTAGTCAGGTGCTTTGTGCTTGTACATAGTCTTGTGTTGCTGTGTTTGCTGTA 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000109605.5 |
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| CDS-3UTR TCA 90 bp | TTACAGCAAACACAGCAACACAAGACTATGTACAAGCACAAAGCACCTGACTACCTCCTTGCCGGTGTCTaGGGCACTGGCCAAGCCATC | + |
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Preference number: 4 (lower is better) Translates to: LQQTQQHKTMYKHKAPDYLLAGV*GTGQAI Trigger: GATGGCTTGGCCAGTGCCTCAGACACCGGCAAGGAG...GTAGTCAGGTGCTTTGTGCTTGTACATAGTCTTGTGTTGCTGTGTTTGCTGTAA 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000109605.5 |
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| CDS-3UTR CCA 90 bp | TACAGCAAACACAGCAACACAAGACTATGTACAAGCACAAAGCACCTGACTACCGTGGGTCATAAGGTTTaGGCCGAGGAGACCCACGGG | + |
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Preference number: 4 (lower is better) Translates to: YSKHSNTRLCTSTKHLTTVGHKV*AEETHG Trigger: CCCGTGGGTCTCCTCGGCCCAAACCTTATGACCCAC...GGTAGTCAGGTGCTTTGTGCTTGTACATAGTCTTGTGTTGCTGTGTTTGCTGTA 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000109605.5 |
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| CDS-3UTR GCA 90 bp | TTACAGCAAACACAGCAACACAAGACTATGTACAAGCACAAAGCACCTGACTACAAAAGGCATCCTCCTTaGCGGTGTCTGAGGCACTGG | + |
|
Preference number: 4 (lower is better) Translates to: LQQTQQHKTMYKHKAPDYKRHPP*RCLRHW Trigger: CCAGTGCCTCAGACACCGGCAAGGAGGATGCCTTTT...GTAGTCAGGTGCTTTGTGCTTGTACATAGTCTTGTGTTGCTGTGTTTGCTGTAA 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000109605.5 |
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| CDS-3UTR CCA 90 bp | TATTACAGCAAACACAGCAACACAAGACTATGTACAAGCACAAAGCACCTGACTGGAAGACAGAACCCCTaGGGAACAGGGGAAAGGCTG | + |
|
Preference number: 4 (lower is better) Translates to: YYSKHSNTRLCTSTKHLTGRQNP*GTGERL Trigger: CAGCCTTTCCCCTGTTCCCCAGGGGTTCTGTCTTCC...AGTCAGGTGCTTTGTGCTTGTACATAGTCTTGTGTTGCTGTGTTTGCTGTAATA 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000109605.5 |
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| CDS-3UTR CCA 90 bp | TATTACAGCAAACACAGCAACACAAGACTATGTACAAGCACAAAGCACCTGACTAGAAGGCAGATTGTCTaGTGGGGCCCTGGAGGTGGA | + |
|
Preference number: 4 (lower is better) Translates to: YYSKHSNTRLCTSTKHLTRRQIV*WGPGGG Trigger: TCCACCTCCAGGGCCCCACCAGACAATCTGCCTTCT...AGTCAGGTGCTTTGTGCTTGTACATAGTCTTGTGTTGCTGTGTTTGCTGTAATA 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000109605.5 |
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| CDS-3UTR CCA 90 bp | TATTACAGCAAACACAGCAACACAAGACTATGTACAAGCACAAAGCACCTGACTAGGAATGCTCTGGAGTaGAAGACAGAACCCCTGGGG | + |
|
Preference number: 4 (lower is better) Translates to: YYSKHSNTRLCTSTKHLTRNALE*KTEPLG Trigger: CCCCAGGGGTTCTGTCTTCCACTCCAGAGCATTCCT...AGTCAGGTGCTTTGTGCTTGTACATAGTCTTGTGTTGCTGTGTTTGCTGTAATA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000109605.5 |
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| CDS-3UTR CCA 90 bp | ATAATTTATTACAGCAAACACAGCAACACAAGACTATGTACAAGCACAAAGCACTGTCTGGTGGGGCCCTaGAGGTGGAGGGGCTATGCT | + |
|
Preference number: 4 (lower is better) Translates to: IIYYSKHSNTRLCTSTKHCLVGP*RWRGYA Trigger: AGCATAGCCCCTCCACCTCCAGGGCCCCACCAGACA...GTGCTTTGTGCTTGTACATAGTCTTGTGTTGCTGTGTTTGCTGTAATAAATTAT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000109605.5 |
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| CDS-3UTR CCA 90 bp | TACAGCAAACACAGCAACACAAGACTATGTACAAGCACAAAGCACCTGACTACCCAAACTAACTCCAGGTaGGTCATAAGGTTTGGGCCG | + |
|
Preference number: 4 (lower is better) Translates to: YSKHSNTRLCTSTKHLTTQTNSR*VIRFGP Trigger: CGGCCCAAACCTTATGACCCACCTGGAGTTAGTTTG...GGTAGTCAGGTGCTTTGTGCTTGTACATAGTCTTGTGTTGCTGTGTTTGCTGTA 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000109605.5 |
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| CDS-3UTR GCA 90 bp | TTACAGCAAACACAGCAACACAAGACTATGTACAAGCACAAAGCACCTGACTACGAACAGGGGAAAGGCTaGAAGAATGTAAAGGGGGCA | + |
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Preference number: 4 (lower is better) Translates to: LQQTQQHKTMYKHKAPDYEQGKG*KNVKGA Trigger: TGCCCCCTTTACATTCTTGCAGCCTTTCCCCTGTTC...GTAGTCAGGTGCTTTGTGCTTGTACATAGTCTTGTGTTGCTGTGTTTGCTGTAA 46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000109605.5 |
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| CDS-3UTR CCA 90 bp | ATAATTTATTACAGCAAACACAGCAACACAAGACTATGTACAAGCACAAAGCACCCCACGGGAACCACCTaGAGAAGGCAGATTGTCTGG | + |
|
Preference number: 4 (lower is better) Translates to: IIYYSKHSNTRLCTSTKHPTGTT*RRQIVW Trigger: CCAGACAATCTGCCTTCTCCAGGTGGTTCCCGTGGG...GTGCTTTGTGCTTGTACATAGTCTTGTGTTGCTGTGTTTGCTGTAATAAATTAT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000109605.5 |
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| CDS-3UTR GCA 90 bp | ATAATTTATTACAGCAAACACAGCAACACAAGACTATGTACAAGCACAAAGCACCTTGGCCAGAGAATCTaGCTTCTCTTTCAGAGCCTC | + |
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Preference number: 4 (lower is better) Translates to: IIYYSKHSNTRLCTSTKHLGQRI*LLFQSL Trigger: GAGGCTCTGAAAGAGAAGGCAGATTCTCTGGCCAAG...GTGCTTTGTGCTTGTACATAGTCTTGTGTTGCTGTGTTTGCTGTAATAAATTAT 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000109605.5 |
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| CDS-3UTR CAA 90 bp | TACAGCAAACACAGCAACACAAGACTATGTACAAGCACAAAGCACCTGACTACCGAAAAGGCATCCTCCTaGCCGGTGTCTGAGGCACTG | + |
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Preference number: 5 (lower is better) Translates to: YSKHSNTRLCTSTKHLTTEKASS*PVSEAL Trigger: CAGTGCCTCAGACACCGGCAAGGAGGATGCCTTTTC...GGTAGTCAGGTGCTTTGTGCTTGTACATAGTCTTGTGTTGCTGTGTTTGCTGTA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000109605.5 |
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