Pregenerated sensors for ATF1 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000023027Ensembl transcript IDs: ENSMUST00000023769.11, ENSMUST00000165804.8, ENSMUST00000168103.2, ENSMUST00000169408.8, ENSMUST00000171869.3, ENSMUST00000172154.8
Found 53 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR TCA 90 bp | TTCCATTCTGACAAAGCAAAGTCACAAACCACCTCCACCACAGGCTaGTGTGTCTCCACGCCATTTAGGAGATCTCCAAACCAATCGAGT | + |
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Preference number: 1 (lower is better) Translates to: FHSDKAKSQTTSTTG*CVSTPFRRSPNQSS Trigger: ACTCGATTGGTTTGGAGATCTCCTAAATGGCGTGGAGACACATCAGCCTGTGGTGGAGGTGGTTTGTGACTTTGCTTTGTCAGAATGGAA 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000023769.11 |
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| 3UTR TCA 90 bp | CAAACTATTAAACTGTCAAACTTGCAGACAGTTCTCTTTCCATTCTaGCAAAGCAAAGTCACAAACCACCTCCACCACAGGCTGATGTGT | + |
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Preference number: 1 (lower is better) Translates to: QTIKLSNLQTVLFPF*QSKVTNHLHHRLMC Trigger: ACACATCAGCCTGTGGTGGAGGTGGTTTGTGACTTTGCTTTGTCAGAATGGAAAGAGAACTGTCTGCAAGTTTGACAGTTTAATAGTTTG 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000023769.11 |
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| 3UTR-3UTR CCA 90 bp | GGAGAAGTCATCACCACGGTCTGCGGGAGAGACGTGGCAGACGGCGTGGTACGGCATCCGTGCTTGGACTaGCCAACTGTAAGGCTCCGT | + |
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Preference number: 2 (lower is better) Translates to: GEVITTVCGRDVADGVVRHPCLD*PTVRLR Trigger: ACGGAGCCTTACAGTTGGCCAGTCCAAGCACGGATG...CCGTACCACGCCGTCTGCCACGTCTCTCCCGCAGACCGTGGTGATGACTTCTCC 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000168103.2 |
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| 3UTR-3UTR TCA 90 bp | GGAGAAGTCATCACCACGGTCTGCGGGAGAGACGTGGCAGACGGCGTGGTACGGAGGATCGTCCCCTGCTaGGTACTGCTTGAATTTGTC | + |
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Preference number: 2 (lower is better) Translates to: GEVITTVCGRDVADGVVRRIVPC*VLLEFV Trigger: GACAAATTCAAGCAGTACTCAGCAGGGGACGATCCT...CCGTACCACGCCGTCTGCCACGTCTCTCCCGCAGACCGTGGTGATGACTTCTCC 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000168103.2 ENSMUST00000169408.8 |
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| 3UTR-3UTR GCA 90 bp | AGAAGTCATCACCACGGTCTGCGGGAGAGACGTGGCAGACGGCGTGGTACGGATAATGTCTGCAGTGCCTaGACTCCATCCGTGCTTGGA | + |
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Preference number: 2 (lower is better) Translates to: RSHHHGLRERRGRRRGTDNVCSA*TPSVLG Trigger: TCCAAGCACGGATGGAGTGCAGGCACTGCAGACATT...ATCCGTACCACGCCGTCTGCCACGTCTCTCCCGCAGACCGTGGTGATGACTTCT 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000168103.2 |
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| 3UTR-3UTR GCA 90 bp | ATTTTGATTTTCCAGAACAGCAACACGGTTCTCCAGGCACTTCACGTACTCCTTCTCGGGACGAGTATCTaGTGTCCGTCAGAGGTCTGT | + |
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Preference number: 2 (lower is better) Translates to: ILIFQNSNTVLQALHVLLLGTSI*CPSEVC Trigger: ACAGACCTCTGACGGACAGCAGATACTCGTCCCGAG...AAGGAGTACGTGAAGTGCCTGGAGAACCGTGTTGCTGTTCTGGAAAATCAAAAT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000168103.2 ENSMUST00000169408.8 |
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| 3UTR-3UTR GCA 90 bp | CTCCATTCTCCCTCCATCATGTCTGTTTGTGAAAACCTAATACAAAGTAGCTTCCAATGTACTGTCCGCTaGTCGTCTGATAGATGGGGG | + |
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Preference number: 2 (lower is better) Translates to: LHSPSIMSVCENLIQSSFQCTVR*SSDRWG Trigger: CCCCCATCTATCAGACGAGCAGCGGACAGTACATTG...GAAGCTACTTTGTATTAGGTTTTCACAAACAGACATGATGGAGGGAGAATGGAG 46% GC, longest homopolymer 5 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000168103.2 |
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| 3UTR-3UTR CCA 90 bp | ATTTTGATTTTCCAGAACAGCAACACGGTTCTCCAGGCACTTCACGTACTCCTTCTGATAGATGGGGGCTaGAACAGACATAGACGTGAT | + |
|
Preference number: 2 (lower is better) Translates to: ILIFQNSNTVLQALHVLLLIDGG*NRHRRD Trigger: ATCACGTCTATGTCTGTTCCAGCCCCCATCTATCAG...AAGGAGTACGTGAAGTGCCTGGAGAACCGTGTTGCTGTTCTGGAAAATCAAAAT 46% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000168103.2 |
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| 3UTR-3UTR TCA 90 bp | CTCCATTCTCCCTCCATCATGTCTGTTTGTGAAAACCTAATACAAAGTAGCTTCGGTCTGCATATCTCCTaGTGCAGTCTGTACAACCAC | + |
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Preference number: 2 (lower is better) Translates to: LHSPSIMSVCENLIQSSFGLHIS*CSLYNH Trigger: GTGGTTGTACAGACTGCATCAGGAGATATGCAGACC...GAAGCTACTTTGTATTAGGTTTTCACAAACAGACATGATGGAGGGAGAATGGAG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000168103.2 |
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| 3UTR-3UTR TCA 90 bp | ACTGCTAAAAACTCATTTAACATACCTGACATTACGACACAATCAGACCACATAATTTATTGGCAGAAATaGGGCACGCACGCACACACA | + |
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Preference number: 2 (lower is better) Translates to: TAKNSFNIPDITTQSDHIIYWQK*GTHAHT Trigger: TGTGTGTGCGTGCGTGCCTCATTTCTGCCAATAAAT...TATGTGGTCTGATTGTGTCGTAATGTCAGGTATGTTAAATGAGTTTTTAGCAGT 40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000023769.11 |
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| 3UTR CAA 90 bp | TTTACATACTTAGTAACGCTTTATGCTTTTACATTTGTAAATTTATaGGCAGAAATGAGGCACGCACGCACACACACACACACACACACA | + |
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Preference number: 2 (lower is better) Translates to: FTYLVTLYAFTFVNL*AEMRHARTHTHTHT Trigger: TGTGTGTGTGTGTGTGTGTGTGCGTGCGTGCCTCATTTCTGCCAATAAATTTACAAATGTAAAAGCATAAAGCGTTACTAAGTATGTAAA 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000023769.11 |
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| 3UTR CCA 72 bp | CAGGAGAAGTCATCACCACGGTCTGCGGGAGAGACGTaGCAGACGGCGTGGTACGGATCTGGTAGGTCTGCA | + |
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Preference number: 3 (lower is better) Translates to: QEKSSPRSAGET*QTAWYGSGRSA Trigger: TGCAGACCTACCAGATCCGTACCACGCCGTCTGCCACGTCTCTCCCGCAGACCGTGGTGATGACTTCTCCTG 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000168103.2 ENSMUST00000169408.8 |
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| 3UTR CCA 72 bp | TCACCACGGTCTGCGGGAGAGACGTGGCAGACGGCGTaGTACGGATCTGGTAGGTCTGCATATCTCCTGATG | + |
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Preference number: 3 (lower is better) Translates to: SPRSAGETWQTA*YGSGRSAYLLM Trigger: CATCAGGAGATATGCAGACCTACCAGATCCGTACCACGCCGTCTGCCACGTCTCTCCCGCAGACCGTGGTGA 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000168103.2 ENSMUST00000169408.8 |
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| 3UTR CCA 72 bp | ATGTCTGCAGTGCCTGCACTCCATCCGTGCTTGGACTaGCCAACTGTAAGGCTCCGTTTGGGGCAATGGCAA | + |
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Preference number: 3 (lower is better) Translates to: MSAVPALHPCLD*PTVRLRLGQWQ Trigger: TTGCCATTGCCCCAAACGGAGCCTTACAGTTGGCCAGTCCAAGCACGGATGGAGTGCAGGCACTGCAGACAT 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000168103.2 |
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| 3UTR-3UTR CAA 90 bp | TTTCCAGAACAGCAACACGGTTCTCCAGGCACTTCACGTACTCCTTCTTCTTCCGCACTCCATCCGTGCTaGGACTGGCCAACTGTAAGG | + |
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Preference number: 3 (lower is better) Translates to: FPEQQHGSPGTSRTPSSSALHPC*DWPTVR Trigger: CCTTACAGTTGGCCAGTCCAAGCACGGATGGAGTGC...GGAAGAAGAAGGAGTACGTGAAGTGCCTGGAGAACCGTGTTGCTGTTCTGGAAA 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000168103.2 |
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| 3UTR GCA 72 bp | ATCTTTTCGGAGCTTCCAATTGAGACAGTAGCTTCCTaGAGGTCATCTCCATTCTCCCTCCATCATGTCTGT | + |
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Preference number: 3 (lower is better) Translates to: IFSELPIETVAS*RSSPFSLHHVC Trigger: ACAGACATGATGGAGGGAGAATGGAGATGACCTGCAGGAAGCTACTGTCTCAATTGGAAGCTCCGAAAAGAT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000023769.11 |
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| 3UTR-3UTR CAA 90 bp | AAGGCAAGTTTTAGGGAACAGAGAAATACAGACGTAGCAGGAACGGACTGCTTCCTGAAAGTCCATTCCTaGAGCACTCTATCTTTTCGG | + |
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Preference number: 3 (lower is better) Translates to: KASFREQRNTDVAGTDCFLKVHS*STLSFR Trigger: CCGAAAAGATAGAGTGCTCAAGGAATGGACTTTCAG...GAAGCAGTCCGTTCCTGCTACGTCTGTATTTCTCTGTTCCCTAAAACTTGCCTT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000023769.11 |
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| 3UTR-3UTR CAA 90 bp | CACACACACACGCGCGCACACACACAAAGGCAAGTTTTAGGGAACAGAGAAATACGCCTGCCATTTTCGTaGCTGACCATTATTTCTATT | + |
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Preference number: 3 (lower is better) Translates to: HTHTRAHTQRQVLGNREIRLPFS*LTIISI Trigger: AATAGAAATAATGGTCAGCAACGAAAATGGCAGGCG...TATTTCTCTGTTCCCTAAAACTTGCCTTTGTGTGTGTGCGCGCGTGTGTGTGTG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000023769.11 |
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| 3UTR-3UTR CAA 90 bp | CTCCATTCTCCCTCCATCATGTCTGTTTGTGAAAACCTAATACAAAGTAGCTTCACTGTAAGGCTCCGTTaGGGGCAATGGCAATGTACT | + |
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Preference number: 3 (lower is better) Translates to: LHSPSIMSVCENLIQSSFTVRLR*GQWQCT Trigger: AGTACATTGCCATTGCCCCAAACGGAGCCTTACAGT...GAAGCTACTTTGTATTAGGTTTTCACAAACAGACATGATGGAGGGAGAATGGAG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000168103.2 |
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| 3UTR CCA 72 bp | AATATATCGGCAGTCACTTCTTTTATAAAGGTACCATaGGCTACATTACACAATAGTCTCAATGTAAGATTG | + |
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Preference number: 3 (lower is better) Translates to: NISAVTSFIKVP*ATLHNSLNVRL Trigger: CAATCTTACATTGAGACTATTGTGTAATGTAGCCCATGGTACCTTTATAAAAGAAGTGACTGCCGATATATT 35% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000023769.11 |
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| CDS-3UTR TCA 90 bp | GGAGAAGTCATCACCACGGTCTGCGGGAGAGACGTGGCAGACGGCGTGGTACGGACGGTTGAACCAGGCTaGGATGCAGTCTCTGTCGTG | + |
|
Preference number: 4 (lower is better) Translates to: GEVITTVCGRDVADGVVRTVEPG*DAVSVV Trigger: CACGACAGAGACTGCATCTCAGCCTGGTTCAACCGT...CCGTACCACGCCGTCTGCCACGTCTCTCCCGCAGACCGTGGTGATGACTTCTCC 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000168103.2 ENSMUST00000169408.8 |
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| 3UTR CAA 72 bp | TGGTTAATGTCTGCAGTGCCTGCACTCCATCCGTGCTaGGACTGGCCAACTGTAAGGCTCCGTTTGGGGCAA | + |
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Preference number: 4 (lower is better) Translates to: WLMSAVPALHPC*DWPTVRLRLGQ Trigger: TTGCCCCAAACGGAGCCTTACAGTTGGCCAGTCCAAGCACGGATGGAGTGCAGGCACTGCAGACATTAACCA 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000168103.2 |
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| CDS-3UTR TCA 90 bp | ATTTTGATTTTCCAGAACAGCAACACGGTTCTCCAGGCACTTCACGTACTCCTTACGGTTGAACCAGGCTaGGATGCAGTCTCTGTCGTG | + |
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Preference number: 4 (lower is better) Translates to: ILIFQNSNTVLQALHVLLTVEPG*DAVSVV Trigger: CACGACAGAGACTGCATCTCAGCCTGGTTCAACCGT...AAGGAGTACGTGAAGTGCCTGGAGAACCGTGTTGCTGTTCTGGAAAATCAAAAT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000168103.2 ENSMUST00000169408.8 |
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| CDS-3UTR TCA 90 bp | ATTCTGACAAAGCAAAGTCACAAACCACCTCCACCACAGGCTGATGTGTCTCCAAGGATCGTCCCCTGCTaGGTACTGCTTGAATTTGTC | + |
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Preference number: 4 (lower is better) Translates to: ILTKQSHKPPPPQADVSPRIVPC*VLLEFV Trigger: GACAAATTCAAGCAGTACTCAGCAGGGGACGATCCT...TGGAGACACATCAGCCTGTGGTGGAGGTGGTTTGTGACTTTGCTTTGTCAGAAT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000023769.11 |
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| CDS-3UTR GCA 90 bp | ATTCTGACAAAGCAAAGTCACAAACCACCTCCACCACAGGCTGATGTGTCTCCAGTCATGGTTAATGTCTaGAGTGCCTGCACTCCATCC | + |
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Preference number: 4 (lower is better) Translates to: ILTKQSHKPPPPQADVSPVMVNV*SACTPS Trigger: GGATGGAGTGCAGGCACTGCAGACATTAACCATGAC...TGGAGACACATCAGCCTGTGGTGGAGGTGGTTTGTGACTTTGCTTTGTCAGAAT 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000023769.11 |
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| CDS-3UTR TCA 90 bp | CTCCATTCTCCCTCCATCATGTCTGTTTGTGAAAACCTAATACAAAGTAGCTTCACGGTTGAACCAGGCTaGGATGCAGTCTCTGTCGTG | + |
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Preference number: 4 (lower is better) Translates to: LHSPSIMSVCENLIQSSFTVEPG*DAVSVV Trigger: CACGACAGAGACTGCATCTCAGCCTGGTTCAACCGT...GAAGCTACTTTGTATTAGGTTTTCACAAACAGACATGATGGAGGGAGAATGGAG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000023769.11 ENSMUST00000168103.2 |
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| CDS-3UTR GCA 90 bp | CTCCATTCTCCCTCCATCATGTCTGTTTGTGAAAACCTAATACAAAGTAGCTTCCTCGGGACGAGTATCTaGTGTCCGTCAGAGGTCTGT | + |
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Preference number: 4 (lower is better) Translates to: LHSPSIMSVCENLIQSSFLGTSI*CPSEVC Trigger: ACAGACCTCTGACGGACAGCAGATACTCGTCCCGAG...GAAGCTACTTTGTATTAGGTTTTCACAAACAGACATGATGGAGGGAGAATGGAG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000023769.11 |
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| CDS-3UTR CCA 90 bp | CTCCATTCTCCCTCCATCATGTCTGTTTGTGAAAACCTAATACAAAGTAGCTTCCATCCGTGCTTGGACTaGCCAACTGTAAGGCTCCGT | + |
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Preference number: 4 (lower is better) Translates to: LHSPSIMSVCENLIQSSFHPCLD*PTVRLR Trigger: ACGGAGCCTTACAGTTGGCCAGTCCAAGCACGGATG...GAAGCTACTTTGTATTAGGTTTTCACAAACAGACATGATGGAGGGAGAATGGAG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000023769.11 |
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| CDS-3UTR CCA 90 bp | TCAGTCGTATTTCTCTTCTTAGTTGAGGGTCATCTGTCTTTGTTGTCTGAGATGCATCCGTGCTTGGACTaGCCAACTGTAAGGCTCCGT | + |
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Preference number: 4 (lower is better) Translates to: SVVFLFLVEGHLSLLSEMHPCLD*PTVRLR Trigger: ACGGAGCCTTACAGTTGGCCAGTCCAAGCACGGATG...CATCTCAGACAACAAAGACAGATGACCCTCAACTAAGAAGAGAAATACGACTGA 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000169408.8 |
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| CDS-3UTR GCA 90 bp | CTCCATTCTCCCTCCATCATGTCTGTTTGTGAAAACCTAATACAAAGTAGCTTCAATGTCTGCAGTGCCTaGACTCCATCCGTGCTTGGA | + |
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Preference number: 4 (lower is better) Translates to: LHSPSIMSVCENLIQSSFNVCSA*TPSVLG Trigger: TCCAAGCACGGATGGAGTGCAGGCACTGCAGACATT...GAAGCTACTTTGTATTAGGTTTTCACAAACAGACATGATGGAGGGAGAATGGAG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000023769.11 |
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| CDS-3UTR GCA 90 bp | CTCCATTCTCCCTCCATCATGTCTGTTTGTGAAAACCTAATACAAAGTAGCTTCTCTGTGAGGAGCCTATaGTGTCAGATGAGTCCTGAG | + |
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Preference number: 4 (lower is better) Translates to: LHSPSIMSVCENLIQSSFSVRSL*CQMSPE Trigger: CTCAGGACTCATCTGACAGCATAGGCTCCTCACAGA...GAAGCTACTTTGTATTAGGTTTTCACAAACAGACATGATGGAGGGAGAATGGAG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000023769.11 |
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| CDS-3UTR GCA 90 bp | ACTGCTAAAAACTCATTTAACATACCTGACATTACGACACAATCAGACCACATACAATGTACTGTCCGCTaGTCGTCTGATAGATGGGGG | + |
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Preference number: 4 (lower is better) Translates to: TAKNSFNIPDITTQSDHIQCTVR*SSDRWG Trigger: CCCCCATCTATCAGACGAGCAGCGGACAGTACATTG...TATGTGGTCTGATTGTGTCGTAATGTCAGGTATGTTAAATGAGTTTTTAGCAGT 42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000023769.11 |
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| CDS-3UTR TCA 90 bp | ACTGCTAAAAACTCATTTAACATACCTGACATTACGACACAATCAGACCACATAGGTCTGCATATCTCCTaGTGCAGTCTGTACAACCAC | + |
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Preference number: 4 (lower is better) Translates to: TAKNSFNIPDITTQSDHIGLHIS*CSLYNH Trigger: GTGGTTGTACAGACTGCATCAGGAGATATGCAGACC...TATGTGGTCTGATTGTGTCGTAATGTCAGGTATGTTAAATGAGTTTTTAGCAGT 41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000023769.11 |
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| CDS-3UTR CCA 90 bp | ACTGCTAAAAACTCATTTAACATACCTGACATTACGACACAATCAGACCACATACTGATAGATGGGGGCTaGAACAGACATAGACGTGAT | + |
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Preference number: 4 (lower is better) Translates to: TAKNSFNIPDITTQSDHILIDGG*NRHRRD Trigger: ATCACGTCTATGTCTGTTCCAGCCCCCATCTATCAG...TATGTGGTCTGATTGTGTCGTAATGTCAGGTATGTTAAATGAGTTTTTAGCAGT 40% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000023769.11 |
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| CDS-3UTR TCA 90 bp | CTCCATTCTCCCTCCATCATGTCTGTTTGTGAAAACCTAATACAAAGTAGCTTCATTTCTCTTCTTAGTTaGGGGTCATCTGTCTTTGTT | + |
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Preference number: 4 (lower is better) Translates to: LHSPSIMSVCENLIQSSFISLLS*GSSVFV Trigger: AACAAAGACAGATGACCCTCAACTAAGAAGAGAAAT...GAAGCTACTTTGTATTAGGTTTTCACAAACAGACATGATGGAGGGAGAATGGAG 39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000023769.11 |
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| CDS-3UTR GCA 90 bp | ACTGCTAAAAACTCATTTAACATACCTGACATTACGACACAATCAGACCACATACTTTGTTGTCTGAGATaGAAGAGTCACAGGAGAAGT | + |
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Preference number: 4 (lower is better) Translates to: TAKNSFNIPDITTQSDHILCCLR*KSHRRS Trigger: ACTTCTCCTGTGACTCTTGCATCTCAGACAACAAAG...TATGTGGTCTGATTGTGTCGTAATGTCAGGTATGTTAAATGAGTTTTTAGCAGT 38% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000023769.11 |
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| 3UTR CAA 72 bp | CCATTATTTCTATTTAAACTGCTGAAAGTCCATTCCTaGAGCACTCTATCTTTTCGGAGCTTCCAATTGAGA | + |
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Preference number: 4 (lower is better) Translates to: PLFLFKLLKVHS*STLSFRSFQLR Trigger: TCTCAATTGGAAGCTCCGAAAAGATAGAGTGCTCAAGGAATGGACTTTCAGCAGTTTAAATAGAAATAATGG 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000023769.11 |
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| CDS-3UTR CAA 90 bp | GGAGAAGTCATCACCACGGTCTGCGGGAGAGACGTGGCAGACGGCGTGGTACGGGAGGCCCCGCAACGGTaGAACCAGGCTGAGATGCAG | + |
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Preference number: 5 (lower is better) Translates to: GEVITTVCGRDVADGVVREAPQR*NQAEMQ Trigger: CTGCATCTCAGCCTGGTTCAACCGTTGCGGGGCCTC...CCGTACCACGCCGTCTGCCACGTCTCTCCCGCAGACCGTGGTGATGACTTCTCC 64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000168103.2 ENSMUST00000169408.8 |
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| CDS-3UTR CAA 90 bp | GGAGAAGTCATCACCACGGTCTGCGGGAGAGACGTGGCAGACGGCGTGGTACGGACTGTAAGGCTCCGTTaGGGGCAATGGCAACTGATG | + |
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Preference number: 5 (lower is better) Translates to: GEVITTVCGRDVADGVVRTVRLR*GQWQLM Trigger: CATCAGTTGCCATTGCCCCAAACGGAGCCTTACAGT...CCGTACCACGCCGTCTGCCACGTCTCTCCCGCAGACCGTGGTGATGACTTCTCC 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000169408.8 |
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| CDS-3UTR CAA 90 bp | AATGTACTGTCCGCTGCTCGTCTGATAGATGGGGGCTGGAACAGACATAGACGTGAGGCCCCGCAACGGTaGAACCAGGCTGAGATGCAG | + |
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Preference number: 5 (lower is better) Translates to: NVLSAARLIDGGWNRHRREAPQR*NQAEMQ Trigger: CTGCATCTCAGCCTGGTTCAACCGTTGCGGGGCCTC...ACGTCTATGTCTGTTCCAGCCCCCATCTATCAGACGAGCAGCGGACAGTACATT 57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000168103.2 |
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| CDS CCA 90 bp | CATCCGTGCTTGGACTGGCCAACTGTAAGGCTCCGTTTGGGGCAATaGCAACTGATGTACTATCTGAGAAACGTGAGGCCCCGCAACGGT | + |
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Preference number: 5 (lower is better) Translates to: HPCLDWPTVRLRLGQ*QLMYYLRNVRPRNG Trigger: ACCGTTGCGGGGCCTCACGTTTCTCAGATAGTACATCAGTTGCCATTGCCCCAAACGGAGCCTTACAGTTGGCCAGTCCAAGCACGGATG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000169408.8 |
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| CDS TCA 90 bp | TGGCAACTGATGTACTATCTGAGAAACGTGAGGCCCCGCAACGGTTaGACCAGGCTGAGATGCAGTCTCTGTCGTGTTACTCTTGTGGGA | + |
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Preference number: 5 (lower is better) Translates to: WQLMYYLRNVRPRNG*TRLRCSLCRVTLVG Trigger: TCCCACAAGAGTAACACGACAGAGACTGCATCTCAGCCTGGTTCAACCGTTGCGGGGCCTCACGTTTCTCAGATAGTACATCAGTTGCCA 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000169408.8 |
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| CDS-3UTR CAA 90 bp | AAGGCAAGTTTTAGGGAACAGAGAAATACAGACGTAGCAGGAACGGACTGCTTCGCACTCCATCCGTGCTaGGACTGGCCAACTGTAAGG | + |
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Preference number: 5 (lower is better) Translates to: KASFREQRNTDVAGTDCFALHPC*DWPTVR Trigger: CCTTACAGTTGGCCAGTCCAAGCACGGATGGAGTGC...GAAGCAGTCCGTTCCTGCTACGTCTGTATTTCTCTGTTCCCTAAAACTTGCCTT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000023769.11 |
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| CDS-3UTR CAA 90 bp | CTCCATTCTCCCTCCATCATGTCTGTTTGTGAAAACCTAATACAAAGTAGCTTCGAGGCCCCGCAACGGTaGAACCAGGCTGAGATGCAG | + |
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Preference number: 5 (lower is better) Translates to: LHSPSIMSVCENLIQSSFEAPQR*NQAEMQ Trigger: CTGCATCTCAGCCTGGTTCAACCGTTGCGGGGCCTC...GAAGCTACTTTGTATTAGGTTTTCACAAACAGACATGATGGAGGGAGAATGGAG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000023769.11 ENSMUST00000168103.2 |
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| CDS-3UTR CAA 90 bp | ATTCTGACAAAGCAAAGTCACAAACCACCTCCACCACAGGCTGATGTGTCTCCAACTGTAAGGCTCCGTTaGGGGCAATGGCAATGTACT | + |
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Preference number: 5 (lower is better) Translates to: ILTKQSHKPPPPQADVSPTVRLR*GQWQCT Trigger: AGTACATTGCCATTGCCCCAAACGGAGCCTTACAGT...TGGAGACACATCAGCCTGTGGTGGAGGTGGTTTGTGACTTTGCTTTGTCAGAAT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000023769.11 |
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| CDS-3UTR CAA 90 bp | CTCCATTCTCCCTCCATCATGTCTGTTTGTGAAAACCTAATACAAAGTAGCTTCGAGGGTCATCTGTCTTaGTTGTCTGAGATGCAAGAG | + |
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Preference number: 5 (lower is better) Translates to: LHSPSIMSVCENLIQSSFEGHLS*LSEMQE Trigger: CTCTTGCATCTCAGACAACAAAGACAGATGACCCTC...GAAGCTACTTTGTATTAGGTTTTCACAAACAGACATGATGGAGGGAGAATGGAG 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000023769.11 |
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| CDS-3UTR CAA 90 bp | ACTGCTAAAAACTCATTTAACATACCTGACATTACGACACAATCAGACCACATAGGTCATCTGTCTTTGTaGTCTGAGATGCAAGAGTCA | + |
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Preference number: 5 (lower is better) Translates to: TAKNSFNIPDITTQSDHIGHLSL*SEMQES Trigger: TGACTCTTGCATCTCAGACAACAAAGACAGATGACC...TATGTGGTCTGATTGTGTCGTAATGTCAGGTATGTTAAATGAGTTTTTAGCAGT 39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000023769.11 |
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| CDS CAA 90 bp | CCTGCACTCCATCCGTGCTTGGACTGGCCAACTGTAAGGCTCCGTTaGGGGCAATGGCAACTGATGTACTATCTGAGAAACGTGAGGCCC | + |
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Preference number: 6 (lower is better) Translates to: PALHPCLDWPTVRLR*GQWQLMYYLRNVRP Trigger: GGGCCTCACGTTTCTCAGATAGTACATCAGTTGCCATTGCCCCAAACGGAGCCTTACAGTTGGCCAGTCCAAGCACGGATGGAGTGCAGG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000169408.8 |
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| CDS CCA 72 bp | TTGGACTGGCCAACTGTAAGGCTCCGTTTGGGGCAATaGCAACTGATGTACTATCTGAGAAACGTGAGGCCC | + |
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Preference number: 6 (lower is better) Translates to: LDWPTVRLRLGQ*QLMYYLRNVRP Trigger: GGGCCTCACGTTTCTCAGATAGTACATCAGTTGCCATTGCCCCAAACGGAGCCTTACAGTTGGCCAGTCCAA 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000169408.8 |
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| CDS CAA 72 bp | GATGTACTATCTGAGAAACGTGAGGCCCCGCAACGGTaGAACCAGGCTGAGATGCAGTCTCTGTCGTGTTAC | + |
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Preference number: 6 (lower is better) Translates to: DVLSEKREAPQR*NQAEMQSLSCY Trigger: GTAACACGACAGAGACTGCATCTCAGCCTGGTTCAACCGTTGCGGGGCCTCACGTTTCTCAGATAGTACATC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 6 transcripts: ENSMUST00000023769.11 ENSMUST00000165804.8 ENSMUST00000168103.2 ENSMUST00000169408.8 ENSMUST00000171869.3 ENSMUST00000172154.8 |
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| CDS CAA 90 bp | ATGACACCTGATGTACTATCTGAGAAACGTGAGGCCCCGCAACGGTaGAACCAGGCTGAGATGCAGTCTCTGTCGTGTTACTCTTGTGGG | + |
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Preference number: 6 (lower is better) Translates to: MTPDVLSEKREAPQR*NQAEMQSLSCYSCG Trigger: CCCACAAGAGTAACACGACAGAGACTGCATCTCAGCCTGGTTCAACCGTTGCGGGGCCTCACGTTTCTCAGATAGTACATCAGGTGTCAT 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000023769.11 ENSMUST00000165804.8 ENSMUST00000171869.3 ENSMUST00000172154.8 |
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| CDS CAA 90 bp | ATGGCAACTGATGTACTATCTGAGAAACGTGAGGCCCCGCAACGGTaGAACCAGGCTGAGATGCAGTCTCTGTCGTGTTACTCTTGTGGG | + |
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Preference number: 6 (lower is better) Translates to: MATDVLSEKREAPQR*NQAEMQSLSCYSCG Trigger: CCCACAAGAGTAACACGACAGAGACTGCATCTCAGCCTGGTTCAACCGTTGCGGGGCCTCACGTTTCTCAGATAGTACATCAGTTGCCAT 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000169408.8 |
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| CDS CAA 72 bp | CATCCGTGCTTGGACTGGCCAACTGTAAGGCTCCGTTaGGGGCAATGGCAACTGATGTACTATCTGAGAAAC | + |
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Preference number: 6 (lower is better) Translates to: HPCLDWPTVRLR*GQWQLMYYLRN Trigger: GTTTCTCAGATAGTACATCAGTTGCCATTGCCCCAAACGGAGCCTTACAGTTGGCCAGTCCAAGCACGGATG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000169408.8 |
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