RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for ATCAY (Mus musculus)

Ensembl gene IDs: ENSMUSG00000034958

Ensembl transcript IDs: ENSMUST00000047408.6, ENSMUST00000146030.8

Found 235 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR CCA 90 bp GGCAGCAAGGAGGTGGATGGAGCAGGTGGCCCCCACTGGAGTTCCTaGGCTTGGAGGCAGGACCTTAGACCTTTGGGGACAGCAGGGTTG +
Preference number: 1 (lower is better)
Translates to: GSKEVDGAGGPHWSS*AWRQDLRPLGTAGL
Trigger: CAACCCTGCTGTCCCCAAAGGTCTAAGGTCCTGCCTCCAAGCCCAGGAACTCCAGTGGGGGCCACCTGCTCCATCCACCTCCTTGCTGCC
63% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000047408.6
ENSMUST00000146030.8
3UTR CCA 90 bp GCATGCCATGGCAGCAAGGAGGTGGATGGAGCAGGTGGCCCCCACTaGAGTTCCTGGGCTTGGAGGCAGGACCTTAGACCTTTGGGGACA +
Preference number: 1 (lower is better)
Translates to: ACHGSKEVDGAGGPH*SSWAWRQDLRPLGT
Trigger: TGTCCCCAAAGGTCTAAGGTCCTGCCTCCAAGCCCAGGAACTCCAGTGGGGGCCACCTGCTCCATCCACCTCCTTGCTGCCATGGCATGC
62% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000047408.6
ENSMUST00000146030.8
3UTR GCA 90 bp TGGCAGGGAGAGGGGACAGTGGGTCACATTCCACAGAGAAGCAGATaGAGCTGCAGCCAGGGCCACCAGACATCTGAGGCTCCAGCTAGG +
Preference number: 1 (lower is better)
Translates to: WQGEGTVGHIPQRSR*SCSQGHQTSEAPAR
Trigger: CCTAGCTGGAGCCTCAGATGTCTGGTGGCCCTGGCTGCAGCTGCATCTGCTTCTCTGTGGAATGTGACCCACTGTCCCCTCTCCCTGCCA
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000047408.6
ENSMUST00000146030.8
3UTR CCA 90 bp TGCAGCCAGGGCCACCAGACATCTGAGGCTCCAGCTAGGGACAGGTaGCAACCGAGCAAAGGGTCTCTCATTGGGTCAGCCCAAAATGCA +
Preference number: 1 (lower is better)
Translates to: CSQGHQTSEAPARDR*QPSKGSLIGSAQNA
Trigger: TGCATTTTGGGCTGACCCAATGAGAGACCCTTTGCTCGGTTGCCACCTGTCCCTAGCTGGAGCCTCAGATGTCTGGTGGCCCTGGCTGCA
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000047408.6
ENSMUST00000146030.8
3UTR CCA 90 bp GTGCATGTCAGGTGGAGATGTGAGGTCAGCAGTCACAACCCTGCCTaGGGTGGCAGGGAGAGGGGACAGTGGGTCACATTCCACAGAGAA +
Preference number: 1 (lower is better)
Translates to: VHVRWRCEVSSHNPA*GGRERGQWVTFHRE
Trigger: TTCTCTGTGGAATGTGACCCACTGTCCCCTCTCCCTGCCACCCCAGGCAGGGTTGTGACTGCTGACCTCACATCTCCACCTGACATGCAC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000047408.6
ENSMUST00000146030.8
3UTR CCA 90 bp GCCCCCACTGGAGTTCCTGGGCTTGGAGGCAGGACCTTAGACCTTTaGGGACAGCAGGGTTGTGTCCATTCATCCATCCATCCATCCCAG +
Preference number: 1 (lower is better)
Translates to: APTGVPGLGGRTLDL*GQQGCVHSSIHPSQ
Trigger: CTGGGATGGATGGATGGATGAATGGACACAACCCTGCTGTCCCCAAAGGTCTAAGGTCCTGCCTCCAAGCCCAGGAACTCCAGTGGGGGC
59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000047408.6
ENSMUST00000146030.8
3UTR TCA 90 bp CCAAAGACAGTCAAATGGCAGAATAGTGCATGTCAGGTGGAGATGTaGGGTCAGCAGTCACAACCCTGCCTGGGGTGGCAGGGAGAGGGG +
Preference number: 1 (lower is better)
Translates to: PKTVKWQNSACQVEM*GQQSQPCLGWQGEG
Trigger: CCCCTCTCCCTGCCACCCCAGGCAGGGTTGTGACTGCTGACCTCACATCTCCACCTGACATGCACTATTCTGCCATTTGACTGTCTTTGG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000047408.6
ENSMUST00000146030.8
3UTR GCA 90 bp GCTCGGAGTCTCTGCTCTTCATATTGCAGGACACAGTCTGGCAGCTaGACGTGTTCCATGGGAATCAGTCGCTCCAGCTCTTCCAGGCTG +
Preference number: 1 (lower is better)
Translates to: ARSLCSSYCRTQSGS*TCSMGISRSSSSRL
Trigger: CAGCCTGGAAGAGCTGGAGCGACTGATTCCCATGGAACACGTGCAGCTGCCAGACTGTGTCCTGCAATATGAAGAGCAGAGACTCCGAGC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000146030.8
3UTR GCA 90 bp GGCCGTGTGCTCTCCCTCTTGGCTCGGAGTCTCTGCTCTTCATATTaGAGGACACAGTCTGGCAGCTGCACGTGTTCCATGGGAATCAGT +
Preference number: 1 (lower is better)
Translates to: GRVLSLLARSLCSSY*RTQSGSCTCSMGIS
Trigger: ACTGATTCCCATGGAACACGTGCAGCTGCCAGACTGTGTCCTGCAATATGAAGAGCAGAGACTCCGAGCCAAGAGGGAGAGCACACGGCC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000146030.8
3UTR CCA 90 bp GAAGGCCCCCAAAGACAGTCAAATGGCAGAATAGTGCATGTCAGGTaGAGATGTGAGGTCAGCAGTCACAACCCTGCCTGGGGTGGCAGG +
Preference number: 1 (lower is better)
Translates to: EGPQRQSNGRIVHVR*RCEVSSHNPAWGGR
Trigger: CCTGCCACCCCAGGCAGGGTTGTGACTGCTGACCTCACATCTCCACCTGACATGCACTATTCTGCCATTTGACTGTCTTTGGGGGCCTTC
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000047408.6
ENSMUST00000146030.8
3UTR TCA 90 bp GTGGCACTGCCCACATCCACCTTTGGCATCCACAAGCCCAGACTGTaGAAGGGTCAAGAACCTGCTCCATTCCGAGATGTGCTCATACCG +
Preference number: 1 (lower is better)
Translates to: VALPTSTFGIHKPRL*KGQEPAPFRDVLIP
Trigger: CGGTATGAGCACATCTCGGAATGGAGCAGGTTCTTGACCCTTTCACAGTCTGGGCTTGTGGATGCCAAAGGTGGATGTGGGCAGTGCCAC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000047408.6
ENSMUST00000146030.8
3UTR TCA 90 bp TGGATCCTGGGTGTCTCAGTAAAGAAATGGAACAGCCCTTCCCCATaGGGCTGCTGGACCTCTGTGTCTTGCCTCACTGTCCCCCAGGTA +
Preference number: 1 (lower is better)
Translates to: WILGVSVKKWNSPSP*GCWTSVSCLTVPQV
Trigger: TACCTGGGGGACAGTGAGGCAAGACACAGAGGTCCAGCAGCCTCATGGGGAAGGGCTGTTCCATTTCTTTACTGAGACACCCAGGATCCA
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000047408.6
ENSMUST00000146030.8
3UTR CCA 90 bp CCTCTTGGCTCGGAGTCTCTGCTCTTCATATTGCAGGACACAGTCTaGCAGCTGCACGTGTTCCATGGGAATCAGTCGCTCCAGCTCTTC +
Preference number: 1 (lower is better)
Translates to: PLGSESLLFILQDTV*QLHVFHGNQSLQLF
Trigger: GAAGAGCTGGAGCGACTGATTCCCATGGAACACGTGCAGCTGCCAGACTGTGTCCTGCAATATGAAGAGCAGAGACTCCGAGCCAAGAGG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000146030.8
3UTR GCA 90 bp TATTGGCAGGACACTCTGATTCTCTCTAGGTGGAAGCTGCTGTCCTaGGGCCATCAGAGGCCGAGAAGCAAGAAACATGTCAGAGGGGAC +
Preference number: 1 (lower is better)
Translates to: YWQDTLILSRWKLLS*GHQRPRSKKHVRGD
Trigger: GTCCCCTCTGACATGTTTCTTGCTTCTCGGCCTCTGATGGCCGCAGGACAGCAGCTTCCACCTAGAGAGAATCAGAGTGTCCTGCCAATA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000047408.6
ENSMUST00000146030.8
3UTR GCA 90 bp AACAAAAAGCACTGCTTTGCTCTACTCTCTCGGGTCCCCTCCCGGTaGCACAGAGTAGCTCTGGTTGTGGTGTGTTTCCTGCAGAGCTCA +
Preference number: 1 (lower is better)
Translates to: NKKHCFALLSRVPSR*HRVALVVVCFLQSS
Trigger: TGAGCTCTGCAGGAAACACACCACAACCAGAGCTACTCTGTGGCACCGGGAGGGGACCCGAGAGAGTAGAGCAAAGCAGTGCTTTTTGTT
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000047408.6
ENSMUST00000146030.8
3UTR GCA 90 bp GATGTAGTGATAGTCTGGGGAGCTGCTATCTGGCAGGAAGCAGGCTaGAAACACGATGATGGCGTTGAGACCTTCCCCGTAGTATCCTCC +
Preference number: 1 (lower is better)
Translates to: DVVIVWGAAIWQEAG*KHDDGVETFPVVSS
Trigger: GGAGGATACTACGGGGAAGGTCTCAACGCCATCATCGTGTTTGCAGCCTGCTTCCTGCCAGATAGCAGCTCCCCAGACTATCACTACATC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000146030.8
3UTR CCA 90 bp GCTCTTCATATTGCAGGACACAGTCTGGCAGCTGCACGTGTTCCATaGGAATCAGTCGCTCCAGCTCTTCCAGGCTGTGCACGTACTGAA +
Preference number: 1 (lower is better)
Translates to: ALHIAGHSLAAARVP*ESVAPALPGCARTE
Trigger: TTCAGTACGTGCACAGCCTGGAAGAGCTGGAGCGACTGATTCCCATGGAACACGTGCAGCTGCCAGACTGTGTCCTGCAATATGAAGAGC
54% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000146030.8
3UTR CCA 90 bp AGACTATGTAGTCATCTCGGGCAGACATGTGCTTTGAGCCCAGCTTaGAGATCAGGTGGTCGCAGCATCCCACCCACCAGGATATACTGT +
Preference number: 1 (lower is better)
Translates to: RLCSHLGQTCALSPA*RSGGRSIPPTRIYC
Trigger: ACAGTATATCCTGGTGGGTGGGATGCTGCGACCACCTGATCTCCAAGCTGGGCTCAAAGCACATGTCTGCCCGAGATGACTACATAGTCT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000047408.6
ENSMUST00000146030.8
3UTR CCA 90 bp AATGGCCGGGAGATGGCCAACACAGTGCGAATGAACCAGGAGGGGTaGACGATGATCAGGGACTTTAGATTCTTCCTCAGTCTCCTGTCA +
Preference number: 1 (lower is better)
Translates to: NGREMANTVRMNQEG*TMIRDFRFFLSLLS
Trigger: TGACAGGAGACTGAGGAAGAATCTAAAGTCCCTGATCATCGTCCACCCCTCCTGGTTCATTCGCACTGTGTTGGCCATCTCCCGGCCATT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000146030.8
3UTR GCA 90 bp TTTGGGGACTGTCCCCACCGTCTCTGTGTTTATAACTGCACAATTTaGTGGTGGGCGGTGGACACTGTTGCTCTGGGTCACTTGCCAAAT +
Preference number: 1 (lower is better)
Translates to: FGDCPHRLCVYNCTI*WWAVDTVALGHLPN
Trigger: ATTTGGCAAGTGACCCAGAGCAACAGTGTCCACCGCCCACCAGCAAATTGTGCAGTTATAAACACAGAGACGGTGGGGACAGTCCCCAAA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000047408.6
ENSMUST00000146030.8
3UTR CCA 90 bp AAACAGGTCCGCACTGTCACCAGGCATGTTTTTGGCGGTGGCCACTaGGGTGTCATCTTCCCACTCAAGTTCATTGCCATTTCCCAAGAA +
Preference number: 1 (lower is better)
Translates to: KQVRTVTRHVFGGGH*GVIFPLKFIAISQE
Trigger: TTCTTGGGAAATGGCAATGAACTTGAGTGGGAAGATGACACCCCAGTGGCCACCGCCAAAAACATGCCTGGTGACAGTGCGGACCTGTTT
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000146030.8
3UTR GCA 90 bp TTTTGGCGGTGGCCACTGGGGTGTCATCTTCCCACTCAAGTTCATTaGCATTTCCCAAGAACTCCAGAGAGTCAGTTTCATCTGGCGTCT +
Preference number: 1 (lower is better)
Translates to: FWRWPLGCHLPTQVH*HFPRTPESQFHLAS
Trigger: AGACGCCAGATGAAACTGACTCTCTGGAGTTCTTGGGAAATGGCAATGAACTTGAGTGGGAAGATGACACCCCAGTGGCCACCGCCAAAA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000146030.8
3UTR CCA 90 bp GAAGAGATTCTCCATGATGTAGTGATAGTCTGGGGAGCTGCTATCTaGCAGGAAGCAGGCTGCAAACACGATGATGGCGTTGAGACCTTC +
Preference number: 1 (lower is better)
Translates to: EEILHDVVIVWGAAI*QEAGCKHDDGVETF
Trigger: GAAGGTCTCAACGCCATCATCGTGTTTGCAGCCTGCTTCCTGCCAGATAGCAGCTCCCCAGACTATCACTACATCATGGAGAATCTCTTC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000146030.8
3UTR TCA 90 bp TCCATGGGAATCAGTCGCTCCAGCTCTTCCAGGCTGTGCACGTACTaGATTTTACTGATGAACTTGACACTGATGAATGGCCGGGAGATG +
Preference number: 1 (lower is better)
Translates to: SMGISRSSSSRLCTY*ILLMNLTLMNGREM
Trigger: CATCTCCCGGCCATTCATCAGTGTCAAGTTCATCAGTAAAATTCAGTACGTGCACAGCCTGGAAGAGCTGGAGCGACTGATTCCCATGGA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000146030.8
3UTR CCA 90 bp GCTGATGACGTACAGGAAGAGATTCTCCATGATGTAGTGATAGTCTaGGGAGCTGCTATCTGGCAGGAAGCAGGCTGCAAACACGATGAT +
Preference number: 1 (lower is better)
Translates to: ADDVQEEILHDVVIV*GAAIWQEAGCKHDD
Trigger: ATCATCGTGTTTGCAGCCTGCTTCCTGCCAGATAGCAGCTCCCCAGACTATCACTACATCATGGAGAATCTCTTCCTGTACGTCATCAGC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000146030.8
3UTR CCA 90 bp TTTATAACTGCACAATTTGCTGGTGGGCGGTGGACACTGTTGCTCTaGGTCACTTGCCAAATGGATCCTGGGTGTCTCAGTAAAGAAATG +
Preference number: 1 (lower is better)
Translates to: FITAQFAGGRWTLLL*VTCQMDPGCLSKEM
Trigger: CATTTCTTTACTGAGACACCCAGGATCCATTTGGCAAGTGACCCAGAGCAACAGTGTCCACCGCCCACCAGCAAATTGTGCAGTTATAAA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000047408.6
ENSMUST00000146030.8
3UTR GCA 90 bp AGCCCAGACTGTGAAAGGGTCAAGAACCTGCTCCATTCCGAGATGTaGTCATACCGCCTTCTTCAAAATAAAACAGTGAAATGGACTCAA +
Preference number: 1 (lower is better)
Translates to: SPDCERVKNLLHSEM*SYRLLQNKTVKWTQ
Trigger: TTGAGTCCATTTCACTGTTTTATTTTGAAGAAGGCGGTATGAGCACATCTCGGAATGGAGCAGGTTCTTGACCCTTTCACAGTCTGGGCT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000047408.6
ENSMUST00000146030.8
3UTR GCA 90 bp AAATCCCCCTGCCTCCTATTCCTGAGTGCTGAAATTAAAGGCATATaGCACCACTGCGCAGTGCTAAGATTTCTTAACATAGAGATACTC +
Preference number: 1 (lower is better)
Translates to: KSPCLLFLSAEIKGI*HHCAVLRFLNIEIL
Trigger: GAGTATCTCTATGTTAAGAAATCTTAGCACTGCGCAGTGGTGGCATATGCCTTTAATTTCAGCACTCAGGAATAGGAGGCAGGGGGATTT
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000047408.6
ENSMUST00000146030.8
3UTR GCA 90 bp TGCCTCCTATTCCTGAGTGCTGAAATTAAAGGCATATGCCACCACTaGGCAGTGCTAAGATTTCTTAACATAGAGATACTCAAGTCTTTA +
Preference number: 1 (lower is better)
Translates to: CLLFLSAEIKGICHH*AVLRFLNIEILKSL
Trigger: TAAAGACTTGAGTATCTCTATGTTAAGAAATCTTAGCACTGCGCAGTGGTGGCATATGCCTTTAATTTCAGCACTCAGGAATAGGAGGCA
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000047408.6
ENSMUST00000146030.8
3UTR-3UTR CCA 90 bp GATGGAGCAGGTGGCCCCCACTGGAGTTCCTGGGCTTGGAGGCAGGACCTTAGACAACCCTGCCTGGGGTaGCAGGGAGAGGGGACAGTG +
Preference number: 2 (lower is better)
Translates to: DGAGGPHWSSWAWRQDLRQPCLG*QGEGTV
Trigger: CACTGTCCCCTCTCCCTGCCACCCCAGGCAGGGTTG...TCTAAGGTCCTGCCTCCAAGCCCAGGAACTCCAGTGGGGGCCACCTGCTCCATC
64% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000047408.6
ENSMUST00000146030.8
3UTR-3UTR CCA 90 bp GGTGATTCCAAAGGGGCGGTGAGCATGCCATGGCAGCAAGGAGGTGGATGGAGCACCACCAGCCCAGCCTaGGGGGTCACACACCTGCCA +
Preference number: 2 (lower is better)
Translates to: GDSKGAVSMPWQQGGGWSTTSPA*GVTHLP
Trigger: TGGCAGGTGTGTGACCCCCCAGGCTGGGCTGGTGGT...GCTCCATCCACCTCCTTGCTGCCATGGCATGCTCACCGCCCCTTTGGAATCACC
63% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000047408.6
ENSMUST00000146030.8
3UTR-3UTR CCA 90 bp GATGGAGCAGGTGGCCCCCACTGGAGTTCCTGGGCTTGGAGGCAGGACCTTAGACAGCAAGGAGGTGGATaGAGCAGGTGGCCCCCACTG +
Preference number: 2 (lower is better)
Translates to: DGAGGPHWSSWAWRQDLRQQGGG*SRWPPL
Trigger: CAGTGGGGGCCACCTGCTCCATCCACCTCCTTGCTG...TCTAAGGTCCTGCCTCCAAGCCCAGGAACTCCAGTGGGGGCCACCTGCTCCATC
63% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000047408.6
ENSMUST00000146030.8
3UTR CAA 90 bp CGATGCTCTTGCTCCCCTATGATGACAGTTCGCCACAGACGACCGTaGGCCGCACTGCCGTCTTCCGCAGAGCCGTCCCCAAACAGGTCC +
Preference number: 2 (lower is better)
Translates to: RCSCSPMMTVRHRRP*AALPSSAEPSPNRS
Trigger: GGACCTGTTTGGGGACGGCTCTGCGGAAGACGGCAGTGCGGCCAACGGTCGTCTGTGGCGAACTGTCATCATAGGGGAGCAAGAGCATCG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000146030.8
3UTR-3UTR CCA 90 bp ATGGAGCAGGTGGCCCCCACTGGAGTTCCTGGGCTTGGAGGCAGGACCTTAGACTCACCTCATAGGCCTTaGCTGTCACCAGCAGCCGCC +
Preference number: 2 (lower is better)
Translates to: MEQVAPTGVPGLGGRTLDSPHRP*LSPAAA
Trigger: GGCGGCTGCTGGTGACAGCCAAGGCCTATGAGGTGA...GTCTAAGGTCCTGCCTCCAAGCCCAGGAACTCCAGTGGGGGCCACCTGCTCCAT
62% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000047408.6
ENSMUST00000146030.8
3UTR-3UTR GCA 90 bp GCCAAGAGGGGCTGTCTGTGGACCTGGCCCCAGGCACCATCTTGGTTCTCATCTTGGAAGCTGCTGTCCTaGGGCCATCAGAGGCCGAGA +
Preference number: 2 (lower is better)
Translates to: AKRGCLWTWPQAPSWFSSWKLLS*GHQRPR
Trigger: TCTCGGCCTCTGATGGCCGCAGGACAGCAGCTTCCA...AGATGAGAACCAAGATGGTGCCTGGGGCCAGGTCCACAGACAGCCCCTCTTGGC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000047408.6
ENSMUST00000146030.8
3UTR-3UTR TCA 90 bp GCAGACATGTGCTTTGAGCCCAGCTTGGAGATCAGGTGGTCGCAGCATCCCACCCAGCTCTCAGGAGGCTaGGGCAGGAGGATCAGGAGT +
Preference number: 2 (lower is better)
Translates to: ADMCFEPSLEIRWSQHPTQLSGG*GRRIRS
Trigger: ACTCCTGATCCTCCTGCCTCAGCCTCCTGAGAGCTG...GGTGGGATGCTGCGACCACCTGATCTCCAAGCTGGGCTCAAAGCACATGTCTGC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000047408.6
ENSMUST00000146030.8
3UTR-3UTR CCA 90 bp GGGTGGTGGTCCCAGGTGTGGGCTAGAATATTAAGCCCCTCGGGGTCTCCTGTTGGCCTTATGTGTCCCTaGGGACAGGAGGCTCAGCAC +
Preference number: 2 (lower is better)
Translates to: GWWSQVWARILSPSGSPVGLMCP*GQEAQH
Trigger: GTGCTGAGCCTCCTGTCCCCAGGGACACATAAGGCC...AACAGGAGACCCCGAGGGGCTTAATATTCTAGCCCACACCTGGGACCACCACCC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000047408.6
ENSMUST00000146030.8
3UTR CAA 90 bp GGCCCCCACTGGAGTTCCTGGGCTTGGAGGCAGGACCTTAGACCTTaGGGGACAGCAGGGTTGTGTCCATTCATCCATCCATCCATCCCA +
Preference number: 2 (lower is better)
Translates to: GPHWSSWAWRQDLRP*GTAGLCPFIHPSIP
Trigger: TGGGATGGATGGATGGATGAATGGACACAACCCTGCTGTCCCCAAAGGTCTAAGGTCCTGCCTCCAAGCCCAGGAACTCCAGTGGGGGCC
59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000047408.6
ENSMUST00000146030.8
3UTR-3UTR TCA 90 bp AGGTGGAAGCTGCTGTCCTGCGGCCATCAGAGGCCGAGAAGCAAGAAACATGTCAATGGACTCAAGCAGTaGGAGGACCCGGGTGCAGGG +
Preference number: 2 (lower is better)
Translates to: RWKLLSCGHQRPRSKKHVNGLKQ*EDPGAG
Trigger: CCCTGCACCCGGGTCCTCTCACTGCTTGAGTCCATT...GACATGTTTCTTGCTTCTCGGCCTCTGATGGCCGCAGGACAGCAGCTTCCACCT
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000047408.6
ENSMUST00000146030.8
3UTR-3UTR TCA 90 bp ACAAAAAGCACTGCTTTGCTCTACTCTCTCGGGTCCCCTCCCGGTGCCACAGAGAATGGACTCAAGCAGTaGGAGGACCCGGGTGCAGGG +
Preference number: 2 (lower is better)
Translates to: TKSTALLYSLGSPPGATENGLKQ*EDPGAG
Trigger: CCCTGCACCCGGGTCCTCTCACTGCTTGAGTCCATT...CTCTGTGGCACCGGGAGGGGACCCGAGAGAGTAGAGCAAAGCAGTGCTTTTTGT
59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000047408.6
ENSMUST00000146030.8
3UTR-3UTR TCA 90 bp GCCAAGAGGGGCTGTCTGTGGACCTGGCCCCAGGCACCATCTTGGTTCTCATCTGGCAGACATGTGCTTTaGGCCCAGCTTGGAGATCAG +
Preference number: 2 (lower is better)
Translates to: AKRGCLWTWPQAPSWFSSGRHVL*AQLGDQ
Trigger: CTGATCTCCAAGCTGGGCTCAAAGCACATGTCTGCC...AGATGAGAACCAAGATGGTGCCTGGGGCCAGGTCCACAGACAGCCCCTCTTGGC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000047408.6
ENSMUST00000146030.8
3UTR-3UTR TCA 90 bp AGTAACCGTGGGTGGCACTGCCCACATCCACCTTTGGCATCCACAAGCCCAGACCCAACACAGTGCGAATaGACCAGGAGGGGTGGACGA +
Preference number: 2 (lower is better)
Translates to: SNRGWHCPHPPLASTSPDPTQCE*TRRGGR
Trigger: TCGTCCACCCCTCCTGGTTCATTCGCACTGTGTTGG...GTCTGGGCTTGTGGATGCCAAAGGTGGATGTGGGCAGTGCCACCCACGGTTACT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000146030.8
3UTR-3UTR CCA 90 bp CCTACCTTTGGGGGAGAGGCACAGAGCTCTCTCTCTCTGTCTGTCTCTCTCTCTGTGCAGGGGACATGGTaGAGCCAGGCATCCTCAGGC +
Preference number: 2 (lower is better)
Translates to: PTFGGEAQSSLSLSVSLSVQGTW*SQASSG
Trigger: GCCTGAGGATGCCTGGCTCCACCATGTCCCCTGCAC...AGAGAGAGAGACAGACAGAGAGAGAGAGCTCTGTGCCTCTCCCCCAAAGGTAGG
59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000047408.6
ENSMUST00000146030.8
3UTR CAA 90 bp CACCTTCATGTAGGGCCGGATCATATGCAGGTCGATGCGATGCTCTaGCTCCCCTATGATGACAGTTCGCCACAGACGACCGTTGGCCGC +
Preference number: 2 (lower is better)
Translates to: HLHVGPDHMQVDAML*LPYDDSSPQTTVGR
Trigger: GCGGCCAACGGTCGTCTGTGGCGAACTGTCATCATAGGGGAGCAAGAGCATCGCATCGACCTGCATATGATCCGGCCCTACATGAAGGTG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000146030.8
3UTR-3UTR GCA 90 bp GGTGATTCCAAAGGGGCGGTGAGCATGCCATGGCAGCAAGGAGGTGGATGGAGCTGCAGGTCGATGCGATaGTCTTGCTCCCCTATGATG +
Preference number: 2 (lower is better)
Translates to: GDSKGAVSMPWQQGGGWSCRSMR*SCSPMM
Trigger: CATCATAGGGGAGCAAGAGCATCGCATCGACCTGCA...GCTCCATCCACCTCCTTGCTGCCATGGCATGCTCACCGCCCCTTTGGAATCACC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000146030.8
3UTR-3UTR CCA 90 bp GCAGACATGTGCTTTGAGCCCAGCTTGGAGATCAGGTGGTCGCAGCATCCCACCCAGAGAAGGGCATCTTaGGGATGCCAAGGCCTGGAA +
Preference number: 2 (lower is better)
Translates to: ADMCFEPSLEIRWSQHPTQRRAS*GCQGLE
Trigger: TTCCAGGCCTTGGCATCCCCAAGATGCCCTTCTCTG...GGTGGGATGCTGCGACCACCTGATCTCCAAGCTGGGCTCAAAGCACATGTCTGC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000047408.6
ENSMUST00000146030.8
3UTR-3UTR CCA 90 bp GGGTGGTGGTCCCAGGTGTGGGCTAGAATATTAAGCCCCTCGGGGTCTCCTGTTCTGATTCTCTCTAGGTaGAAGCTGCTGTCCTGCGGC +
Preference number: 2 (lower is better)
Translates to: GWWSQVWARILSPSGSPVLILSR*KLLSCG
Trigger: GCCGCAGGACAGCAGCTTCCACCTAGAGAGAATCAG...AACAGGAGACCCCGAGGGGCTTAATATTCTAGCCCACACCTGGGACCACCACCC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000047408.6
ENSMUST00000146030.8
3UTR-3UTR CCA 90 bp ACAAAAAGCACTGCTTTGCTCTACTCTCTCGGGTCCCCTCCCGGTGCCACAGAGTTTGGCGGTGGCCACTaGGGTGTCATCTTCCCACTC +
Preference number: 2 (lower is better)
Translates to: TKSTALLYSLGSPPGATEFGGGH*GVIFPL
Trigger: GAGTGGGAAGATGACACCCCAGTGGCCACCGCCAAA...CTCTGTGGCACCGGGAGGGGACCCGAGAGAGTAGAGCAAAGCAGTGCTTTTTGT
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000146030.8
3UTR CAA 90 bp TGGCCGTGTGCTCTCCCTCTTGGCTCGGAGTCTCTGCTCTTCATATaGCAGGACACAGTCTGGCAGCTGCACGTGTTCCATGGGAATCAG +
Preference number: 2 (lower is better)
Translates to: WPCALPLGSESLLFI*QDTVWQLHVFHGNQ
Trigger: CTGATTCCCATGGAACACGTGCAGCTGCCAGACTGTGTCCTGCAATATGAAGAGCAGAGACTCCGAGCCAAGAGGGAGAGCACACGGCCA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000146030.8
3UTR-3UTR TCA 90 bp ACAAAAAGCACTGCTTTGCTCTACTCTCTCGGGTCCCCTCCCGGTGCCACAGAGCATGTGCAATGGGCTTaGAGGCCCCCAAAGACAGTC +
Preference number: 2 (lower is better)
Translates to: TKSTALLYSLGSPPGATEHVQWA*RPPKTV
Trigger: GACTGTCTTTGGGGGCCTTCAAGCCCATTGCACATG...CTCTGTGGCACCGGGAGGGGACCCGAGAGAGTAGAGCAAAGCAGTGCTTTTTGT
57% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 2 transcripts:
ENSMUST00000047408.6
ENSMUST00000146030.8
3UTR-3UTR GCA 90 bp CTGGTCTGGGCAGAGGATAGGAAAGTGGATACAACTTCTTCCCTTGGAATGAGGGTGAGAGGACCCGGGTaGAGGGGACATGGTGGAGCC +
Preference number: 2 (lower is better)
Translates to: LVWAEDRKVDTTSSLGMRVRGPG*RGHGGA
Trigger: GGCTCCACCATGTCCCCTGCACCCGGGTCCTCTCAC...CCTCATTCCAAGGGAAGAAGTTGTATCCACTTTCCTATCCTCTGCCCAGACCAG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000047408.6
ENSMUST00000146030.8
3UTR-3UTR GCA 90 bp ACAAAAAGCACTGCTTTGCTCTACTCTCTCGGGTCCCCTCCCGGTGCCACAGAGTCTCGGGCAGACATGTaGTTTGAGCCCAGCTTGGAG +
Preference number: 2 (lower is better)
Translates to: TKSTALLYSLGSPPGATESRADM*FEPSLE
Trigger: CTCCAAGCTGGGCTCAAAGCACATGTCTGCCCGAGA...CTCTGTGGCACCGGGAGGGGACCCGAGAGAGTAGAGCAAAGCAGTGCTTTTTGT
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000047408.6
ENSMUST00000146030.8
3UTR-3UTR GCA 90 bp GAGGCCGAGAAGCAAGAAACATGTCAGAGGGGACACCTCACAGTGGGGTGGATAGGCCCTGGTGGGTTCTaGTTGCCTGTATCAGTGGGT +
Preference number: 2 (lower is better)
Translates to: EAEKQETCQRGHLTVGWIGPGGF*LPVSVG
Trigger: ACCCACTGATACAGGCAAGCAGAACCCACCAGGGCC...TATCCACCCCACTGTGAGGTGTCCCCTCTGACATGTTTCTTGCTTCTCGGCCTC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000047408.6
ENSMUST00000146030.8
3UTR-3UTR GCA 90 bp GGGTGGTGGTCCCAGGTGTGGGCTAGAATATTAAGCCCCTCGGGGTCTCCTGTTTGGCAGGAAGCAGGCTaGAAACACGATGATGGCGTT +
Preference number: 2 (lower is better)
Translates to: GWWSQVWARILSPSGSPVWQEAG*KHDDGV
Trigger: AACGCCATCATCGTGTTTGCAGCCTGCTTCCTGCCA...AACAGGAGACCCCGAGGGGCTTAATATTCTAGCCCACACCTGGGACCACCACCC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000146030.8
3UTR-3UTR CCA 90 bp GCAGACATGTGCTTTGAGCCCAGCTTGGAGATCAGGTGGTCGCAGCATCCCACCAGGCTGAGTCTGGTCTaGGCAGAGGATAGGAAAGTG +
Preference number: 2 (lower is better)
Translates to: ADMCFEPSLEIRWSQHPTRLSLV*AEDRKV
Trigger: CACTTTCCTATCCTCTGCCCAGACCAGACTCAGCCT...GGTGGGATGCTGCGACCACCTGATCTCCAAGCTGGGCTCAAAGCACATGTCTGC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000047408.6
ENSMUST00000146030.8
3UTR-3UTR CCA 90 bp GAGGCCGAGAAGCAAGAAACATGTCAGAGGGGACACCTCACAGTGGGGTGGATAGGTCTTCAGTGGCCCTaGTGGGTTCTGCTTGCCTGT +
Preference number: 2 (lower is better)
Translates to: EAEKQETCQRGHLTVGWIGLQWP*WVLLAC
Trigger: ACAGGCAAGCAGAACCCACCAGGGCCACTGAAGACC...TATCCACCCCACTGTGAGGTGTCCCCTCTGACATGTTTCTTGCTTCTCGGCCTC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000047408.6
ENSMUST00000146030.8
3UTR-3UTR CCA 90 bp AGGTGGAAGCTGCTGTCCTGCGGCCATCAGAGGCCGAGAAGCAAGAAACATGTCGTGTGCTCTCCCTCTTaGCTCGGAGTCTCTGCTCTT +
Preference number: 2 (lower is better)
Translates to: RWKLLSCGHQRPRSKKHVVCSPS*LGVSAL
Trigger: AAGAGCAGAGACTCCGAGCCAAGAGGGAGAGCACAC...GACATGTTTCTTGCTTCTCGGCCTCTGATGGCCGCAGGACAGCAGCTTCCACCT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000146030.8
3UTR CAA 90 bp TCCTGGGCTTGGAGGCAGGACCTTAGACCTTTGGGGACAGCAGGGTaGTGTCCATTCATCCATCCATCCATCCCAGACACAGAGATCCTC +
Preference number: 2 (lower is better)
Translates to: SWAWRQDLRPLGTAG*CPFIHPSIPDTEIL
Trigger: GAGGATCTCTGTGTCTGGGATGGATGGATGGATGAATGGACACAACCCTGCTGTCCCCAAAGGTCTAAGGTCCTGCCTCCAAGCCCAGGA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000047408.6
ENSMUST00000146030.8
3UTR-3UTR TCA 90 bp AGGTGGAAGCTGCTGTCCTGCGGCCATCAGAGGCCGAGAAGCAAGAAACATGTCCACAAGCCCAGACTGTaGAAGGGTCAAGAACCTGCT +
Preference number: 2 (lower is better)
Translates to: RWKLLSCGHQRPRSKKHVHKPRL*KGQEPA
Trigger: AGCAGGTTCTTGACCCTTTCACAGTCTGGGCTTGTG...GACATGTTTCTTGCTTCTCGGCCTCTGATGGCCGCAGGACAGCAGCTTCCACCT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000047408.6
ENSMUST00000146030.8
3UTR-3UTR TCA 90 bp GGTGATTCCAAAGGGGCGGTGAGCATGCCATGGCAGCAAGGAGGTGGATGGAGCCCTGCCTCCTATTCCTaGGTGCTGAAATTAAAGGCA +
Preference number: 2 (lower is better)
Translates to: GDSKGAVSMPWQQGGGWSPASYS*VLKLKA
Trigger: TGCCTTTAATTTCAGCACTCAGGAATAGGAGGCAGG...GCTCCATCCACCTCCTTGCTGCCATGGCATGCTCACCGCCCCTTTGGAATCACC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000047408.6
ENSMUST00000146030.8
3UTR-3UTR TCA 90 bp CCTACCTTTGGGGGAGAGGCACAGAGCTCTCTCTCTCTGTCTGTCTCTCTCTCTAGTATCCTCCATGGGTaGCCACCTTCATGTAGGGCC +
Preference number: 2 (lower is better)
Translates to: PTFGGEAQSSLSLSVSLSSILHG*PPSCRA
Trigger: GGCCCTACATGAAGGTGGTCACCCATGGAGGATACT...AGAGAGAGAGACAGACAGAGAGAGAGAGCTCTGTGCCTCTCCCCCAAAGGTAGG
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000146030.8
3UTR-3UTR GCA 90 bp AGTAACCGTGGGTGGCACTGCCCACATCCACCTTTGGCATCCACAAGCCCAGACCTCTGCTCTTCATATTaGAGGACACAGTCTGGCAGC +
Preference number: 2 (lower is better)
Translates to: SNRGWHCPHPPLASTSPDLCSSY*RTQSGS
Trigger: GCTGCCAGACTGTGTCCTGCAATATGAAGAGCAGAG...GTCTGGGCTTGTGGATGCCAAAGGTGGATGTGGGCAGTGCCACCCACGGTTACT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000146030.8
3UTR-3UTR CCA 90 bp CCTACCTTTGGGGGAGAGGCACAGAGCTCTCTCTCTCTGTCTGTCTCTCTCTCTCAGAGAAGGGCATCTTaGGGATGCCAAGGCCTGGAA +
Preference number: 2 (lower is better)
Translates to: PTFGGEAQSSLSLSVSLSQRRAS*GCQGLE
Trigger: TTCCAGGCCTTGGCATCCCCAAGATGCCCTTCTCTG...AGAGAGAGAGACAGACAGAGAGAGAGAGCTCTGTGCCTCTCCCCCAAAGGTAGG
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000047408.6
ENSMUST00000146030.8
3UTR-3UTR GCA 90 bp GTGGATAGAACCTACCTTTGGGGGAGAGGCACAGAGCTCTCTCTCTCTGTCTGTTCTCGGGCAGACATGTaGTTTGAGCCCAGCTTGGAG +
Preference number: 2 (lower is better)
Translates to: VDRTYLWGRGTELSLSVCSRADM*FEPSLE
Trigger: CTCCAAGCTGGGCTCAAAGCACATGTCTGCCCGAGA...ACAGACAGAGAGAGAGAGCTCTGTGCCTCTCCCCCAAAGGTAGGTTCTATCCAC
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000047408.6
ENSMUST00000146030.8
3UTR-3UTR GCA 90 bp ACAAAAAGCACTGCTTTGCTCTACTCTCTCGGGTCCCCTCCCGGTGCCACAGAGTCATATGCAGGTCGATaGGATGCTCTTGCTCCCCTA +
Preference number: 2 (lower is better)
Translates to: TKSTALLYSLGSPPGATESYAGR*DALAPL
Trigger: TAGGGGAGCAAGAGCATCGCATCGACCTGCATATGA...CTCTGTGGCACCGGGAGGGGACCCGAGAGAGTAGAGCAAAGCAGTGCTTTTTGT
54% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000146030.8
3UTR-3UTR CCA 90 bp GTGGATAGAACCTACCTTTGGGGGAGAGGCACAGAGCTCTCTCTCTCTGTCTGTAAGAGTAACCGTGGGTaGCACTGCCCACATCCACCT +
Preference number: 2 (lower is better)
Translates to: VDRTYLWGRGTELSLSVCKSNRG*HCPHPP
Trigger: AGGTGGATGTGGGCAGTGCCACCCACGGTTACTCTT...ACAGACAGAGAGAGAGAGCTCTGTGCCTCTCCCCCAAAGGTAGGTTCTATCCAC
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000047408.6
ENSMUST00000146030.8
3UTR-3UTR CCA 90 bp GCAGACATGTGCTTTGAGCCCAGCTTGGAGATCAGGTGGTCGCAGCATCCCACCCTGTGTTATCCTAGCTaGGACAGAGAAGGGCATCTT +
Preference number: 2 (lower is better)
Translates to: ADMCFEPSLEIRWSQHPTLCYPS*DREGHL
Trigger: AAGATGCCCTTCTCTGTCCCAGCTAGGATAACACAG...GGTGGGATGCTGCGACCACCTGATCTCCAAGCTGGGCTCAAAGCACATGTCTGC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000047408.6
ENSMUST00000146030.8
3UTR-3UTR CCA 90 bp GAGGCCGAGAAGCAAGAAACATGTCAGAGGGGACACCTCACAGTGGGGTGGATAAGGCTGAGTCTGGTCTaGGCAGAGGATAGGAAAGTG +
Preference number: 2 (lower is better)
Translates to: EAEKQETCQRGHLTVGWIRLSLV*AEDRKV
Trigger: CACTTTCCTATCCTCTGCCCAGACCAGACTCAGCCT...TATCCACCCCACTGTGAGGTGTCCCCTCTGACATGTTTCTTGCTTCTCGGCCTC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000047408.6
ENSMUST00000146030.8
3UTR CAA 90 bp AAAATGCATATCTGTGTTATCCTAGCTGGGACAGAGAAGGGCATCTaGGGGATGCCAAGGCCTGGAAGAGTAACCGTGGGTGGCACTGCC +
Preference number: 2 (lower is better)
Translates to: KMHICVILAGTEKGI*GMPRPGRVTVGGTA
Trigger: GGCAGTGCCACCCACGGTTACTCTTCCAGGCCTTGGCATCCCCAAGATGCCCTTCTCTGTCCCAGCTAGGATAACACAGATATGCATTTT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000047408.6
ENSMUST00000146030.8
3UTR-3UTR TCA 90 bp CCTACCTTTGGGGGAGAGGCACAGAGCTCTCTCTCTCTGTCTGTCTCTCTCTCTAGGAGGGGTGGACGATaGTCAGGGACTTTAGATTCT +
Preference number: 2 (lower is better)
Translates to: PTFGGEAQSSLSLSVSLSRRGGR*SGTLDS
Trigger: AGAATCTAAAGTCCCTGATCATCGTCCACCCCTCCT...AGAGAGAGAGACAGACAGAGAGAGAGAGCTCTGTGCCTCTCCCCCAAAGGTAGG
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000146030.8
3UTR-3UTR GCA 90 bp CTGGTCTGGGCAGAGGATAGGAAAGTGGATACAACTTCTTCCCTTGGAATGAGGAGAAGCAGATGCAGCTaGAGCCAGGGCCACCAGACA +
Preference number: 2 (lower is better)
Translates to: LVWAEDRKVDTTSSLGMRRSRCS*SQGHQT
Trigger: TGTCTGGTGGCCCTGGCTGCAGCTGCATCTGCTTCT...CCTCATTCCAAGGGAAGAAGTTGTATCCACTTTCCTATCCTCTGCCCAGACCAG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000047408.6
ENSMUST00000146030.8
3UTR-3UTR GCA 90 bp GCCAAGAGGGGCTGTCTGTGGACCTGGCCCCAGGCACCATCTTGGTTCTCATCTCAAAACAAAAAGCACTaGTTTGCTCTACTCTCTCGG +
Preference number: 2 (lower is better)
Translates to: AKRGCLWTWPQAPSWFSSQNKKH*FALLSR
Trigger: CCGAGAGAGTAGAGCAAAGCAGTGCTTTTTGTTTTG...AGATGAGAACCAAGATGGTGCCTGGGGCCAGGTCCACAGACAGCCCCTCTTGGC
53% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 2 transcripts:
ENSMUST00000047408.6
ENSMUST00000146030.8
3UTR-3UTR GCA 90 bp AAGGCCTGGAAGAGTAACCGTGGGTGGCACTGCCCACATCCACCTTTGGCATCCCCCACTCAAGTTCATTaGCATTTCCCAAGAACTCCA +
Preference number: 2 (lower is better)
Translates to: KAWKSNRGWHCPHPPLASPTQVH*HFPRTP
Trigger: TGGAGTTCTTGGGAAATGGCAATGAACTTGAGTGGG...GGATGCCAAAGGTGGATGTGGGCAGTGCCACCCACGGTTACTCTTCCAGGCCTT
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000146030.8
3UTR-3UTR CCA 90 bp GTGGATAGAACCTACCTTTGGGGGAGAGGCACAGAGCTCTCTCTCTCTGTCTGTGCTTTTCTTCTGACCTaGGAAGGAGGAACTCCGGCT +
Preference number: 2 (lower is better)
Translates to: VDRTYLWGRGTELSLSVCAFLLT*EGGTPA
Trigger: AGCCGGAGTTCCTCCTTCCCAGGTCAGAAGAAAAGC...ACAGACAGAGAGAGAGAGCTCTGTGCCTCTCCCCCAAAGGTAGGTTCTATCCAC
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000146030.8
3UTR-3UTR GCA 90 bp CCTGGATCTTCATCTTTCTTCTCAGACACCAAATGTCTCCTACTTGATGACACAGTGAGAGGACCCGGGTaGAGGGGACATGGTGGAGCC +
Preference number: 2 (lower is better)
Translates to: PGSSSFFSDTKCLLLDDTVRGPG*RGHGGA
Trigger: GGCTCCACCATGTCCCCTGCACCCGGGTCCTCTCAC...TGTGTCATCAAGTAGGAGACATTTGGTGTCTGAGAAGAAAGATGAAGATCCAGG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000047408.6
ENSMUST00000146030.8
3UTR-3UTR GCA 90 bp CTGGTCTGGGCAGAGGATAGGAAAGTGGATACAACTTCTTCCCTTGGAATGAGGTCTCTAGGTGGAAGCTaGTGTCCTGCGGCCATCAGA +
Preference number: 2 (lower is better)
Translates to: LVWAEDRKVDTTSSLGMRSLGGS*CPAAIR
Trigger: TCTGATGGCCGCAGGACAGCAGCTTCCACCTAGAGA...CCTCATTCCAAGGGAAGAAGTTGTATCCACTTTCCTATCCTCTGCCCAGACCAG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000047408.6
ENSMUST00000146030.8
3UTR-3UTR CCA 90 bp AGGTGGAAGCTGCTGTCCTGCGGCCATCAGAGGCCGAGAAGCAAGAAACATGTCCAAAGGGTCTCTCATTaGGTCAGCCCAAAATGCATA +
Preference number: 2 (lower is better)
Translates to: RWKLLSCGHQRPRSKKHVQRVSH*VSPKCI
Trigger: TATGCATTTTGGGCTGACCCAATGAGAGACCCTTTG...GACATGTTTCTTGCTTCTCGGCCTCTGATGGCCGCAGGACAGCAGCTTCCACCT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000047408.6
ENSMUST00000146030.8
3UTR-3UTR CCA 90 bp AACTCACAGAAATCCCCCTGCCTCCTATTCCTGAGTGCTGAAATTAAAGGCATAGGCTGTCTGTGGACCTaGCCCCAGGCACCATCTTGG +
Preference number: 2 (lower is better)
Translates to: NSQKSPCLLFLSAEIKGIGCLWT*PQAPSW
Trigger: CCAAGATGGTGCCTGGGGCCAGGTCCACAGACAGCC...TATGCCTTTAATTTCAGCACTCAGGAATAGGAGGCAGGGGGATTTCTGTGAGTT
52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000047408.6
ENSMUST00000146030.8
3UTR CAA 90 bp TTTTTGGCGGTGGCCACTGGGGTGTCATCTTCCCACTCAAGTTCATaGCCATTTCCCAAGAACTCCAGAGAGTCAGTTTCATCTGGCGTC +
Preference number: 2 (lower is better)
Translates to: FLAVATGVSSSHSSS*PFPKNSRESVSSGV
Trigger: GACGCCAGATGAAACTGACTCTCTGGAGTTCTTGGGAAATGGCAATGAACTTGAGTGGGAAGATGACACCCCAGTGGCCACCGCCAAAAA
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000146030.8
3UTR-3UTR GCA 90 bp CCTGGATCTTCATCTTTCTTCTCAGACACCAAATGTCTCCTACTTGATGACACACAGCAGTCACAACCCTaGCTGGGGTGGCAGGGAGAG +
Preference number: 2 (lower is better)
Translates to: PGSSSFFSDTKCLLLDDTQQSQP*LGWQGE
Trigger: CTCTCCCTGCCACCCCAGGCAGGGTTGTGACTGCTG...TGTGTCATCAAGTAGGAGACATTTGGTGTCTGAGAAGAAAGATGAAGATCCAGG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000047408.6
ENSMUST00000146030.8
3UTR-3UTR GCA 90 bp CTGGTCTGGGCAGAGGATAGGAAAGTGGATACAACTTCTTCCCTTGGAATGAGGACACAGTCTGGCAGCTaGACGTGTTCCATGGGAATC +
Preference number: 2 (lower is better)
Translates to: LVWAEDRKVDTTSSLGMRTQSGS*TCSMGI
Trigger: GATTCCCATGGAACACGTGCAGCTGCCAGACTGTGT...CCTCATTCCAAGGGAAGAAGTTGTATCCACTTTCCTATCCTCTGCCCAGACCAG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000146030.8
3UTR-3UTR CCA 90 bp GTGGATAGAACCTACCTTTGGGGGAGAGGCACAGAGCTCTCTCTCTCTGTCTGTCTGTGTTATCCTAGCTaGGACAGAGAAGGGCATCTT +
Preference number: 2 (lower is better)
Translates to: VDRTYLWGRGTELSLSVCLCYPS*DREGHL
Trigger: AAGATGCCCTTCTCTGTCCCAGCTAGGATAACACAG...ACAGACAGAGAGAGAGAGCTCTGTGCCTCTCCCCCAAAGGTAGGTTCTATCCAC
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000047408.6
ENSMUST00000146030.8
3UTR-3UTR CCA 90 bp GAGGCCGAGAAGCAAGAAACATGTCAGAGGGGACACCTCACAGTGGGGTGGATACAAAGGGTCTCTCATTaGGTCAGCCCAAAATGCATA +
Preference number: 2 (lower is better)
Translates to: EAEKQETCQRGHLTVGWIQRVSH*VSPKCI
Trigger: TATGCATTTTGGGCTGACCCAATGAGAGACCCTTTG...TATCCACCCCACTGTGAGGTGTCCCCTCTGACATGTTTCTTGCTTCTCGGCCTC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000047408.6
ENSMUST00000146030.8
3UTR-3UTR CCA 90 bp AGGTGGAAGCTGCTGTCCTGCGGCCATCAGAGGCCGAGAAGCAAGAAACATGTCCAGAGGATAGGAAAGTaGATACAACTTCTTCCCTTG +
Preference number: 2 (lower is better)
Translates to: RWKLLSCGHQRPRSKKHVQRIGK*IQLLPL
Trigger: CAAGGGAAGAAGTTGTATCCACTTTCCTATCCTCTG...GACATGTTTCTTGCTTCTCGGCCTCTGATGGCCGCAGGACAGCAGCTTCCACCT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000047408.6
ENSMUST00000146030.8
3UTR-3UTR CCA 90 bp ATACTCAAGTCTTTAGGGAACCACAGGGAGACTCCTCCCTGCAAATGTCATCTGGCTGCACGTGTTCCATaGGAATCAGTCGCTCCAGCT +
Preference number: 2 (lower is better)
Translates to: ILKSLGNHRETPPCKCHLAARVP*ESVAPA
Trigger: AGCTGGAGCGACTGATTCCCATGGAACACGTGCAGC...CAGATGACATTTGCAGGGAGGAGTCTCCCTGTGGTTCCCTAAAGACTTGAGTAT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000146030.8
3UTR-3UTR TCA 90 bp AACTCACAGAAATCCCCCTGCCTCCTATTCCTGAGTGCTGAAATTAAAGGCATAATTCCAAAGGGGCGGTaGGCATGCCATGGCAGCAAG +
Preference number: 2 (lower is better)
Translates to: NSQKSPCLLFLSAEIKGIIPKGR*ACHGSK
Trigger: CTTGCTGCCATGGCATGCTCACCGCCCCTTTGGAAT...TATGCCTTTAATTTCAGCACTCAGGAATAGGAGGCAGGGGGATTTCTGTGAGTT
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000047408.6
ENSMUST00000146030.8
3UTR-3UTR GCA 90 bp AACTCACAGAAATCCCCCTGCCTCCTATTCCTGAGTGCTGAAATTAAAGGCATAAGAAGCAGATGCAGCTaGAGCCAGGGCCACCAGACA +
Preference number: 2 (lower is better)
Translates to: NSQKSPCLLFLSAEIKGIRSRCS*SQGHQT
Trigger: TGTCTGGTGGCCCTGGCTGCAGCTGCATCTGCTTCT...TATGCCTTTAATTTCAGCACTCAGGAATAGGAGGCAGGGGGATTTCTGTGAGTT
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000047408.6
ENSMUST00000146030.8
3UTR-3UTR GCA 90 bp CTGGTCTGGGCAGAGGATAGGAAAGTGGATACAACTTCTTCCCTTGGAATGAGGTCACAGAAATCCCCCTaGCTCCTATTCCTGAGTGCT +
Preference number: 2 (lower is better)
Translates to: LVWAEDRKVDTTSSLGMRSQKSP*LLFLSA
Trigger: AGCACTCAGGAATAGGAGGCAGGGGGATTTCTGTGA...CCTCATTCCAAGGGAAGAAGTTGTATCCACTTTCCTATCCTCTGCCCAGACCAG
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000047408.6
ENSMUST00000146030.8
3UTR-3UTR GCA 90 bp GATCAGTACATGTGCAATGGGCTTGAAGGCCCCCAAAGACAGTCAAATGGCAGATTGTGGTGTGTTTCCTaGAGAGCTCAGATCCATGGG +
Preference number: 2 (lower is better)
Translates to: DQYMCNGLEGPQRQSNGRLWCVS*RAQIHG
Trigger: CCCATGGATCTGAGCTCTGCAGGAAACACACCACAA...TCTGCCATTTGACTGTCTTTGGGGGCCTTCAAGCCCATTGCACATGTACTGATC
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000047408.6
ENSMUST00000146030.8
3UTR-3UTR CCA 90 bp ATGTGCTCATACCGCCTTCTTCAAAATAAAACAGTGAAATGGACTCAAGCAGTGGTGCAGGGGACATGGTaGAGCCAGGCATCCTCAGGC +
Preference number: 2 (lower is better)
Translates to: MCSYRLLQNKTVKWTQAVVQGTW*SQASSG
Trigger: GCCTGAGGATGCCTGGCTCCACCATGTCCCCTGCAC...CACTGCTTGAGTCCATTTCACTGTTTTATTTTGAAGAAGGCGGTATGAGCACAT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000047408.6
ENSMUST00000146030.8
3UTR-3UTR CCA 90 bp AACATCTGGAGTCACATCTACTTTAAAGGAGCTCAAAATGTTGGGTTTGTTGACCAACCCTGCCTGGGGTaGCAGGGAGAGGGGACAGTG +
Preference number: 2 (lower is better)
Translates to: NIWSHIYFKGAQNVGFVDQPCLG*QGEGTV
Trigger: CACTGTCCCCTCTCCCTGCCACCCCAGGCAGGGTTG...GTCAACAAACCCAACATTTTGAGCTCCTTTAAAGTAGATGTGACTCCAGATGTT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000047408.6
ENSMUST00000146030.8
3UTR-3UTR CCA 90 bp TGCCTCCTATTCCTGAGTGCTGAAATTAAAGGCATATGCCACCACTGCGCAGTGGACATGCTAGTTTCCTaGTCCTCTGTTGCCTCTGCT +
Preference number: 2 (lower is better)
Translates to: CLLFLSAEIKGICHHCAVDMLVS*SSVASA
Trigger: AGCAGAGGCAACAGAGGACCAGGAAACTAGCATGTC...CACTGCGCAGTGGTGGCATATGCCTTTAATTTCAGCACTCAGGAATAGGAGGCA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000146030.8
3UTR-3UTR GCA 90 bp CTGAGTGCTGAAATTAAAGGCATATGCCACCACTGCGCAGTGCTAAGATTTCTTGTCCTCTGTTGCCTCTaGTGCCCTGTCCTCTTCTTC +
Preference number: 2 (lower is better)
Translates to: LSAEIKGICHHCAVLRFLVLCCL*CPVLFF
Trigger: GAAGAAGAGGACAGGGCAGCAGAGGCAACAGAGGAC...AAGAAATCTTAGCACTGCGCAGTGGTGGCATATGCCTTTAATTTCAGCACTCAG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000146030.8
3UTR-3UTR CCA 90 bp CCTGGATCTTCATCTTTCTTCTCAGACACCAAATGTCTCCTACTTGATGACACAGCTTTGAGCCCAGCTTaGAGATCAGGTGGTCGCAGC +
Preference number: 2 (lower is better)
Translates to: PGSSSFFSDTKCLLLDDTALSPA*RSGGRS
Trigger: GCTGCGACCACCTGATCTCCAAGCTGGGCTCAAAGC...TGTGTCATCAAGTAGGAGACATTTGGTGTCTGAGAAGAAAGATGAAGATCCAGG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000047408.6
ENSMUST00000146030.8
3UTR-3UTR CCA 90 bp ATGTGCTCATACCGCCTTCTTCAAAATAAAACAGTGAAATGGACTCAAGCAGTGGGCCTTATGTGTCCCTaGGGACAGGAGGCTCAGCAC +
Preference number: 2 (lower is better)
Translates to: MCSYRLLQNKTVKWTQAVGLMCP*GQEAQH
Trigger: GTGCTGAGCCTCCTGTCCCCAGGGACACATAAGGCC...CACTGCTTGAGTCCATTTCACTGTTTTATTTTGAAGAAGGCGGTATGAGCACAT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000047408.6
ENSMUST00000146030.8
3UTR-3UTR CCA 90 bp ATACTCAAGTCTTTAGGGAACCACAGGGAGACTCCTCCCTGCAAATGTCATCTGCCCCAGGCACCATCTTaGTTCTCATCTTCTGATGCT +
Preference number: 2 (lower is better)
Translates to: ILKSLGNHRETPPCKCHLPQAPS*FSSSDA
Trigger: AGCATCAGAAGATGAGAACCAAGATGGTGCCTGGGG...CAGATGACATTTGCAGGGAGGAGTCTCCCTGTGGTTCCCTAAAGACTTGAGTAT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000047408.6
ENSMUST00000146030.8
3UTR-3UTR GCA 90 bp ATGTGCTCATACCGCCTTCTTCAAAATAAAACAGTGAAATGGACTCAAGCAGTGTCTTCAGCCAACCAATaGCAGGCATCCTCCTCCGGG +
Preference number: 2 (lower is better)
Translates to: MCSYRLLQNKTVKWTQAVSSANQ*QASSSG
Trigger: CCCGGAGGAGGATGCCTGGCATTGGTTGGCTGAAGA...CACTGCTTGAGTCCATTTCACTGTTTTATTTTGAAGAAGGCGGTATGAGCACAT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000146030.8
3UTR-3UTR CCA 90 bp AGGTGGAAGCTGCTGTCCTGCGGCCATCAGAGGCCGAGAAGCAAGAAACATGTCGTGTCAGTTAACATCTaGAGTCACATCTACTTTAAA +
Preference number: 2 (lower is better)
Translates to: RWKLLSCGHQRPRSKKHVVSVNI*SHIYFK
Trigger: TTTAAAGTAGATGTGACTCCAGATGTTAACTGACAC...GACATGTTTCTTGCTTCTCGGCCTCTGATGGCCGCAGGACAGCAGCTTCCACCT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000047408.6
ENSMUST00000146030.8
3UTR-3UTR CCA 90 bp ATGTGCTCATACCGCCTTCTTCAAAATAAAACAGTGAAATGGACTCAAGCAGTGCACCAGGCATGTTTTTaGCGGTGGCCACTGGGGTGT +
Preference number: 2 (lower is better)
Translates to: MCSYRLLQNKTVKWTQAVHQACF*RWPLGC
Trigger: ACACCCCAGTGGCCACCGCCAAAAACATGCCTGGTG...CACTGCTTGAGTCCATTTCACTGTTTTATTTTGAAGAAGGCGGTATGAGCACAT
48% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 1 transcripts:
ENSMUST00000146030.8
3UTR CAA 90 bp TCTGGAGTCACATCTACTTTAAAGGAGCTCAAAATGTTGGGTTTGTaGACCACCAGGCTGATCAGTACATGTGCAATGGGCTTGAAGGCC +
Preference number: 2 (lower is better)
Translates to: SGVTSTLKELKMLGL*TTRLISTCAMGLKA
Trigger: GGCCTTCAAGCCCATTGCACATGTACTGATCAGCCTGGTGGTCAACAAACCCAACATTTTGAGCTCCTTTAAAGTAGATGTGACTCCAGA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000047408.6
ENSMUST00000146030.8
3UTR-3UTR CCA 90 bp GACACCAAATGTCTCCTACTTGATGACACAGAGGCTGAGTCTGGTCTGGGCAGATACAACTTCTTCCCTTaGAATGAGGTGTCAGTTAAC +
Preference number: 2 (lower is better)
Translates to: DTKCLLLDDTEAESGLGRYNFFP*NEVSVN
Trigger: GTTAACTGACACCTCATTCCAAGGGAAGAAGTTGTA...TCTGCCCAGACCAGACTCAGCCTCTGTGTCATCAAGTAGGAGACATTTGGTGTC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000047408.6
ENSMUST00000146030.8
3UTR-3UTR CCA 90 bp CTGAGTGCTGAAATTAAAGGCATATGCCACCACTGCGCAGTGCTAAGATTTCTTATGAACCAGGAGGGGTaGACGATGATCAGGGACTTT +
Preference number: 2 (lower is better)
Translates to: LSAEIKGICHHCAVLRFLMNQEG*TMIRDF
Trigger: AAAGTCCCTGATCATCGTCCACCCCTCCTGGTTCAT...AAGAAATCTTAGCACTGCGCAGTGGTGGCATATGCCTTTAATTTCAGCACTCAG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000146030.8
3UTR-3UTR CCA 90 bp ATACTCAAGTCTTTAGGGAACCACAGGGAGACTCCTCCCTGCAAATGTCATCTGTCCATGTCTAGGTTCTaGGTAGATCAGGACATGCTA +
Preference number: 2 (lower is better)
Translates to: ILKSLGNHRETPPCKCHLSMSRF*VDQDML
Trigger: TAGCATGTCCTGATCTACCCAGAACCTAGACATGGA...CAGATGACATTTGCAGGGAGGAGTCTCCCTGTGGTTCCCTAAAGACTTGAGTAT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000146030.8
3UTR-3UTR TCA 90 bp AACATCTGGAGTCACATCTACTTTAAAGGAGCTCAAAATGTTGGGTTTGTTGACCACAAGCCCAGACTGTaGAAGGGTCAAGAACCTGCT +
Preference number: 2 (lower is better)
Translates to: NIWSHIYFKGAQNVGFVDHKPRL*KGQEPA
Trigger: AGCAGGTTCTTGACCCTTTCACAGTCTGGGCTTGTG...GTCAACAAACCCAACATTTTGAGCTCCTTTAAAGTAGATGTGACTCCAGATGTT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000047408.6
ENSMUST00000146030.8
3UTR-3UTR TCA 90 bp CCTGGATCTTCATCTTTCTTCTCAGACACCAAATGTCTCCTACTTGATGACACACCTGCCTCCTATTCCTaGGTGCTGAAATTAAAGGCA +
Preference number: 2 (lower is better)
Translates to: PGSSSFFSDTKCLLLDDTPASYS*VLKLKA
Trigger: TGCCTTTAATTTCAGCACTCAGGAATAGGAGGCAGG...TGTGTCATCAAGTAGGAGACATTTGGTGTCTGAGAAGAAAGATGAAGATCCAGG
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000047408.6
ENSMUST00000146030.8
3UTR-3UTR TCA 90 bp AAGAACCTGCTCCATTCCGAGATGTGCTCATACCGCCTTCTTCAAAATAAAACAAGGCTGTGCACGTACTaGATTTTACTGATGAACTTG +
Preference number: 2 (lower is better)
Translates to: KNLLHSEMCSYRLLQNKTRLCTY*ILLMNL
Trigger: CAAGTTCATCAGTAAAATTCAGTACGTGCACAGCCT...TGTTTTATTTTGAAGAAGGCGGTATGAGCACATCTCGGAATGGAGCAGGTTCTT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000146030.8
3UTR-3UTR CCA 90 bp CTGAGTGCTGAAATTAAAGGCATATGCCACCACTGCGCAGTGCTAAGATTTCTTTACAACTTCTTCCCTTaGAATGAGGTGTCAGTTAAC +
Preference number: 2 (lower is better)
Translates to: LSAEIKGICHHCAVLRFLYNFFP*NEVSVN
Trigger: GTTAACTGACACCTCATTCCAAGGGAAGAAGTTGTA...AAGAAATCTTAGCACTGCGCAGTGGTGGCATATGCCTTTAATTTCAGCACTCAG
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000047408.6
ENSMUST00000146030.8
3UTR-3UTR CCA 90 bp AAGAACCTGCTCCATTCCGAGATGTGCTCATACCGCCTTCTTCAAAATAAAACACAGAGGATAGGAAAGTaGATACAACTTCTTCCCTTG +
Preference number: 2 (lower is better)
Translates to: KNLLHSEMCSYRLLQNKTQRIGK*IQLLPL
Trigger: CAAGGGAAGAAGTTGTATCCACTTTCCTATCCTCTG...TGTTTTATTTTGAAGAAGGCGGTATGAGCACATCTCGGAATGGAGCAGGTTCTT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000047408.6
ENSMUST00000146030.8
3UTR CCA 72 bp GCAGGGGACATGGTGGAGCCAGGCATCCTCAGGCGGTaGAGGCTCGATGAAGGCGGGGCTCCCAGGGCTTCG +
Preference number: 3 (lower is better)
Translates to: AGDMVEPGILRR*RLDEGGAPRAS
Trigger: CGAAGCCCTGGGAGCCCCGCCTTCATCGAGCCTCCACCGCCTGAGGATGCCTGGCTCCACCATGTCCCCTGC
69% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000047408.6
ENSMUST00000146030.8
3UTR CCA 72 bp GACTCAAGCAGTGAGAGGACCCGGGTGCAGGGGACATaGTGGAGCCAGGCATCCTCAGGCGGTGGAGGCTCG +
Preference number: 3 (lower is better)
Translates to: DSSSERTRVQGT*WSQASSGGGGS
Trigger: CGAGCCTCCACCGCCTGAGGATGCCTGGCTCCACCATGTCCCCTGCACCCGGGTCCTCTCACTGCTTGAGTC
67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000047408.6
ENSMUST00000146030.8
3UTR CCA 72 bp GGGGCGGTGAGCATGCCATGGCAGCAAGGAGGTGGATaGAGCAGGTGGCCCCCACTGGAGTTCCTGGGCTTG +
Preference number: 3 (lower is better)
Translates to: GAVSMPWQQGGG*SRWPPLEFLGL
Trigger: CAAGCCCAGGAACTCCAGTGGGGGCCACCTGCTCCATCCACCTCCTTGCTGCCATGGCATGCTCACCGCCCC
67% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000047408.6
ENSMUST00000146030.8
3UTR CCA 72 bp TCAAGCAGTGAGAGGACCCGGGTGCAGGGGACATGGTaGAGCCAGGCATCCTCAGGCGGTGGAGGCTCGATG +
Preference number: 3 (lower is better)
Translates to: SSSERTRVQGTW*SQASSGGGGSM
Trigger: CATCGAGCCTCCACCGCCTGAGGATGCCTGGCTCCACCATGTCCCCTGCACCCGGGTCCTCTCACTGCTTGA
65% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000047408.6
ENSMUST00000146030.8
3UTR GCA 72 bp ACCTGGGAAGGAGGAACTCCGGCTGCGGTGGCCGTGTaGTCTCCCTCTTGGCTCGGAGTCTCTGCTCTTCAT +
Preference number: 3 (lower is better)
Translates to: TWEGGTPAAVAV*SPSWLGVSALH
Trigger: ATGAAGAGCAGAGACTCCGAGCCAAGAGGGAGAGCACACGGCCACCGCAGCCGGAGTTCCTCCTTCCCAGGT
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000146030.8
3UTR CCA 72 bp GAGGTGGATGGAGCAGGTGGCCCCCACTGGAGTTCCTaGGCTTGGAGGCAGGACCTTAGACCTTTGGGGACA +
Preference number: 3 (lower is better)
Translates to: EVDGAGGPHWSS*AWRQDLRPLGT
Trigger: TGTCCCCAAAGGTCTAAGGTCCTGCCTCCAAGCCCAGGAACTCCAGTGGGGGCCACCTGCTCCATCCACCTC
62% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000047408.6
ENSMUST00000146030.8
3UTR CCA 72 bp GGCCACCAGACATCTGAGGCTCCAGCTAGGGACAGGTaGCAACCGAGCAAAGGGTCTCTCATTGGGTCAGCC +
Preference number: 3 (lower is better)
Translates to: GHQTSEAPARDR*QPSKGSLIGSA
Trigger: GGCTGACCCAATGAGAGACCCTTTGCTCGGTTGCCACCTGTCCCTAGCTGGAGCCTCAGATGTCTGGTGGCC
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000047408.6
ENSMUST00000146030.8
3UTR GCA 72 bp GATGCCAAGGCCTGGAAGAGTAACCGTGGGTGGCACTaGCCACATCCACCTTTGGCATCCACAAGCCCAGAC +
Preference number: 3 (lower is better)
Translates to: DAKAWKSNRGWH*PHPPLASTSPD
Trigger: GTCTGGGCTTGTGGATGCCAAAGGTGGATGTGGGCAGTGCCACCCACGGTTACTCTTCCAGGCCTTGGCATC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000047408.6
ENSMUST00000146030.8
3UTR GCA 72 bp GGTGGCCGTGTGCTCTCCCTCTTGGCTCGGAGTCTCTaGTCTTCATATTGCAGGACACAGTCTGGCAGCTGC +
Preference number: 3 (lower is better)
Translates to: GGRVLSLLARSL*SSYCRTQSGSC
Trigger: GCAGCTGCCAGACTGTGTCCTGCAATATGAAGAGCAGAGACTCCGAGCCAAGAGGGAGAGCACACGGCCACC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000146030.8
3UTR CCA 72 bp TGGGACAGAGAAGGGCATCTTGGGGATGCCAAGGCCTaGAAGAGTAACCGTGGGTGGCACTGCCCACATCCA +
Preference number: 3 (lower is better)
Translates to: WDREGHLGDAKA*KSNRGWHCPHP
Trigger: TGGATGTGGGCAGTGCCACCCACGGTTACTCTTCCAGGCCTTGGCATCCCCAAGATGCCCTTCTCTGTCCCA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000047408.6
ENSMUST00000146030.8
3UTR CCA 72 bp AGTCATCTCGGGCAGACATGTGCTTTGAGCCCAGCTTaGAGATCAGGTGGTCGCAGCATCCCACCCACCAGG +
Preference number: 3 (lower is better)
Translates to: SHLGQTCALSPA*RSGGRSIPPTR
Trigger: CCTGGTGGGTGGGATGCTGCGACCACCTGATCTCCAAGCTGGGCTCAAAGCACATGTCTGCCCGAGATGACT
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000047408.6
ENSMUST00000146030.8
3UTR CCA 72 bp CTGTGTCTTGCCTCACTGTCCCCCAGGTACCTGGGGTaGTGGTCCCAGGTGTGGGCTAGAATATTAAGCCCC +
Preference number: 3 (lower is better)
Translates to: LCLASLSPRYLG*WSQVWARILSP
Trigger: GGGGCTTAATATTCTAGCCCACACCTGGGACCACCACCCCAGGTACCTGGGGGACAGTGAGGCAAGACACAG
60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000047408.6
ENSMUST00000146030.8
3UTR-3UTR CAA 90 bp AGTAACCGTGGGTGGCACTGCCCACATCCACCTTTGGCATCCACAAGCCCAGACTGCTTTGAGCCCAGCTaGGAGATCAGGTGGTCGCAG +
Preference number: 3 (lower is better)
Translates to: SNRGWHCPHPPLASTSPDCFEPS*EIRWSQ
Trigger: CTGCGACCACCTGATCTCCAAGCTGGGCTCAAAGCA...GTCTGGGCTTGTGGATGCCAAAGGTGGATGTGGGCAGTGCCACCCACGGTTACT
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000047408.6
ENSMUST00000146030.8
3UTR-3UTR CAA 90 bp CGTGGGTGGCACTGCCCACATCCACCTTTGGCATCCACAAGCCCAGACTGTGAATTTCCTGGTCCTCTGTaGCCTCTGCTGCCCTGTCCT +
Preference number: 3 (lower is better)
Translates to: RGWHCPHPPLASTSPDCEFPGPL*PLLPCP
Trigger: AGGACAGGGCAGCAGAGGCAACAGAGGACCAGGAAA...TTCACAGTCTGGGCTTGTGGATGCCAAAGGTGGATGTGGGCAGTGCCACCCACG
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000146030.8
3UTR-3UTR CAA 90 bp AGTAACCGTGGGTGGCACTGCCCACATCCACCTTTGGCATCCACAAGCCCAGACGGGCAGACATGTGCTTaGAGCCCAGCTTGGAGATCA +
Preference number: 3 (lower is better)
Translates to: SNRGWHCPHPPLASTSPDGQTCA*SPAWRS
Trigger: TGATCTCCAAGCTGGGCTCAAAGCACATGTCTGCCC...GTCTGGGCTTGTGGATGCCAAAGGTGGATGTGGGCAGTGCCACCCACGGTTACT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000047408.6
ENSMUST00000146030.8
3UTR-3UTR CAA 90 bp GATGGAGCAGGTGGCCCCCACTGGAGTTCCTGGGCTTGGAGGCAGGACCTTAGAGTAGCCCTTGCTATCTaGGAACTCACAGAAATCCCC +
Preference number: 3 (lower is better)
Translates to: DGAGGPHWSSWAWRQDLRVALAI*ELTEIP
Trigger: GGGGATTTCTGTGAGTTCCAAGATAGCAAGGGCTAC...TCTAAGGTCCTGCCTCCAAGCCCAGGAACTCCAGTGGGGGCCACCTGCTCCATC
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000047408.6
ENSMUST00000146030.8
3UTR TCA 72 bp CTGTATCAGTGGGTGCTGGTGATTCCAAAGGGGCGGTaGGCATGCCATGGCAGCAAGGAGGTGGATGGAGCA +
Preference number: 3 (lower is better)
Translates to: LYQWVLVIPKGR*ACHGSKEVDGA
Trigger: TGCTCCATCCACCTCCTTGCTGCCATGGCATGCTCACCGCCCCTTTGGAATCACCAGCACCCACTGATACAG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000047408.6
ENSMUST00000146030.8
3UTR TCA 72 bp TGGTGGGTTCTGCTTGCCTGTATCAGTGGGTGCTGGTaGTTCCAAAGGGGCGGTGAGCATGCCATGGCAGCA +
Preference number: 3 (lower is better)
Translates to: WWVLLACISGCW*FQRGGEHAMAA
Trigger: TGCTGCCATGGCATGCTCACCGCCCCTTTGGAATCACCAGCACCCACTGATACAGGCAAGCAGAACCCACCA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000047408.6
ENSMUST00000146030.8
3UTR CCA 72 bp GGAACCACAGGGAGACTCCTCCCTGCAAATGTCATCTaGCCTTATGTGTCCCTGGGGACAGGAGGCTCAGCA +
Preference number: 3 (lower is better)
Translates to: GTTGRLLPANVI*PYVSLGTGGSA
Trigger: TGCTGAGCCTCCTGTCCCCAGGGACACATAAGGCCAGATGACATTTGCAGGGAGGAGTCTCCCTGTGGTTCC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000047408.6
ENSMUST00000146030.8
3UTR-3UTR CAA 90 bp CGTGGGTGGCACTGCCCACATCCACCTTTGGCATCCACAAGCCCAGACTGTGAAACATGTGCAATGGGCTaGAAGGCCCCCAAAGACAGT +
Preference number: 3 (lower is better)
Translates to: RGWHCPHPPLASTSPDCETCAMG*KAPKDS
Trigger: ACTGTCTTTGGGGGCCTTCAAGCCCATTGCACATGT...TTCACAGTCTGGGCTTGTGGATGCCAAAGGTGGATGTGGGCAGTGCCACCCACG
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000047408.6
ENSMUST00000146030.8
3UTR-3UTR CAA 90 bp GCCAAGAGGGGCTGTCTGTGGACCTGGCCCCAGGCACCATCTTGGTTCTCATCTGTAGCCCTTGCTATCTaGGAACTCACAGAAATCCCC +
Preference number: 3 (lower is better)
Translates to: AKRGCLWTWPQAPSWFSSVALAI*ELTEIP
Trigger: GGGGATTTCTGTGAGTTCCAAGATAGCAAGGGCTAC...AGATGAGAACCAAGATGGTGCCTGGGGCCAGGTCCACAGACAGCCCCTCTTGGC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000047408.6
ENSMUST00000146030.8
3UTR-3UTR CAA 90 bp GAGGCCGAGAAGCAAGAAACATGTCAGAGGGGACACCTCACAGTGGGGTGGATACCTGGTGGGTTCTGCTaGCCTGTATCAGTGGGTGCT +
Preference number: 3 (lower is better)
Translates to: EAEKQETCQRGHLTVGWIPGGFC*PVSVGA
Trigger: AGCACCCACTGATACAGGCAAGCAGAACCCACCAGG...TATCCACCCCACTGTGAGGTGTCCCCTCTGACATGTTTCTTGCTTCTCGGCCTC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000047408.6
ENSMUST00000146030.8
3UTR CCA 72 bp GCAGACATGTGCTTTGAGCCCAGCTTGGAGATCAGGTaGTCGCAGCATCCCACCCACCAGGATATACTGTCC +
Preference number: 3 (lower is better)
Translates to: ADMCFEPSLEIR*SQHPTHQDILS
Trigger: GGACAGTATATCCTGGTGGGTGGGATGCTGCGACCACCTGATCTCCAAGCTGGGCTCAAAGCACATGTCTGC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000047408.6
ENSMUST00000146030.8
3UTR CCA 72 bp GGGACACCTCACAGTGGGGTGGATAGAACCTACCTTTaGGGGAGAGGCACAGAGCTCTCTCTCTCTGTCTGT +
Preference number: 3 (lower is better)
Translates to: GTPHSGVDRTYL*GRGTELSLSVC
Trigger: ACAGACAGAGAGAGAGAGCTCTGTGCCTCTCCCCCAAAGGTAGGTTCTATCCACCCCACTGTGAGGTGTCCC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000047408.6
ENSMUST00000146030.8
3UTR CCA 72 bp ATTGCAGGACACAGTCTGGCAGCTGCACGTGTTCCATaGGAATCAGTCGCTCCAGCTCTTCCAGGCTGTGCA +
Preference number: 3 (lower is better)
Translates to: IAGHSLAAARVP*ESVAPALPGCA
Trigger: TGCACAGCCTGGAAGAGCTGGAGCGACTGATTCCCATGGAACACGTGCAGCTGCCAGACTGTGTCCTGCAAT
57% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000146030.8
3UTR GCA 72 bp ATAGTCTGGGGAGCTGCTATCTGGCAGGAAGCAGGCTaGAAACACGATGATGGCGTTGAGACCTTCCCCGTA +
Preference number: 3 (lower is better)
Translates to: IVWGAAIWQEAG*KHDDGVETFPV
Trigger: TACGGGGAAGGTCTCAACGCCATCATCGTGTTTGCAGCCTGCTTCCTGCCAGATAGCAGCTCCCCAGACTAT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000146030.8
3UTR GCA 72 bp CTCTCCCTCTTGGCTCGGAGTCTCTGCTCTTCATATTaGAGGACACAGTCTGGCAGCTGCACGTGTTCCATG +
Preference number: 3 (lower is better)
Translates to: LSLLARSLCSSY*RTQSGSCTCSM
Trigger: CATGGAACACGTGCAGCTGCCAGACTGTGTCCTGCAATATGAAGAGCAGAGACTCCGAGCCAAGAGGGAGAG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000146030.8
3UTR CCA 72 bp CTGGATAAAGACAACTTACAAACCACCAGCCCAGCCTaGGGGGTCACACACCTGCCATCTCAGCTCTCAGGA +
Preference number: 3 (lower is better)
Translates to: LDKDNLQTTSPA*GVTHLPSQLSG
Trigger: TCCTGAGAGCTGAGATGGCAGGTGTGTGACCCCCCAGGCTGGGCTGGTGGTTTGTAAGTTGTCTTTATCCAG
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000047408.6
ENSMUST00000146030.8
3UTR CCA 72 bp GCACAATTTGCTGGTGGGCGGTGGACACTGTTGCTCTaGGTCACTTGCCAAATGGATCCTGGGTGTCTCAGT +
Preference number: 3 (lower is better)
Translates to: AQFAGGRWTLLL*VTCQMDPGCLS
Trigger: ACTGAGACACCCAGGATCCATTTGGCAAGTGACCCAGAGCAACAGTGTCCACCGCCCACCAGCAAATTGTGC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000047408.6
ENSMUST00000146030.8
3UTR CCA 72 bp ACAGGTCCGCACTGTCACCAGGCATGTTTTTGGCGGTaGCCACTGGGGTGTCATCTTCCCACTCAAGTTCAT +
Preference number: 3 (lower is better)
Translates to: TGPHCHQACFWR*PLGCHLPTQVH
Trigger: ATGAACTTGAGTGGGAAGATGACACCCCAGTGGCCACCGCCAAAAACATGCCTGGTGACAGTGCGGACCTGT
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000146030.8
3UTR TCA 72 bp CCCACATCCACCTTTGGCATCCACAAGCCCAGACTGTaGAAGGGTCAAGAACCTGCTCCATTCCGAGATGTG +
Preference number: 3 (lower is better)
Translates to: PTSTFGIHKPRL*KGQEPAPFRDV
Trigger: CACATCTCGGAATGGAGCAGGTTCTTGACCCTTTCACAGTCTGGGCTTGTGGATGCCAAAGGTGGATGTGGG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000047408.6
ENSMUST00000146030.8
3UTR TCA 72 bp GGTGTCTCAGTAAAGAAATGGAACAGCCCTTCCCCATaGGGCTGCTGGACCTCTGTGTCTTGCCTCACTGTC +
Preference number: 3 (lower is better)
Translates to: GVSVKKWNSPSP*GCWTSVSCLTV
Trigger: GACAGTGAGGCAAGACACAGAGGTCCAGCAGCCTCATGGGGAAGGGCTGTTCCATTTCTTTACTGAGACACC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000047408.6
ENSMUST00000146030.8
3UTR GCA 72 bp GACACTCTGATTCTCTCTAGGTGGAAGCTGCTGTCCTaGGGCCATCAGAGGCCGAGAAGCAAGAAACATGTC +
Preference number: 3 (lower is better)
Translates to: DTLILSRWKLLS*GHQRPRSKKHV
Trigger: GACATGTTTCTTGCTTCTCGGCCTCTGATGGCCGCAGGACAGCAGCTTCCACCTAGAGAGAATCAGAGTGTC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000047408.6
ENSMUST00000146030.8
3UTR GCA 72 bp GCTGGTGGGCGGTGGACACTGTTGCTCTGGGTCACTTaGCAAATGGATCCTGGGTGTCTCAGTAAAGAAATG +
Preference number: 3 (lower is better)
Translates to: AGGRWTLLLWVT*QMDPGCLSKEM
Trigger: CATTTCTTTACTGAGACACCCAGGATCCATTTGGCAAGTGACCCAGAGCAACAGTGTCCACCGCCCACCAGC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000047408.6
ENSMUST00000146030.8
3UTR GCA 72 bp TGTCCCCACCGTCTCTGTGTTTATAACTGCACAATTTaGTGGTGGGCGGTGGACACTGTTGCTCTGGGTCAC +
Preference number: 3 (lower is better)
Translates to: CPHRLCVYNCTI*WWAVDTVALGH
Trigger: GTGACCCAGAGCAACAGTGTCCACCGCCCACCAGCAAATTGTGCAGTTATAAACACAGAGACGGTGGGGACA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000047408.6
ENSMUST00000146030.8
3UTR GCA 72 bp CTCTGCTCTTCATATTGCAGGACACAGTCTGGCAGCTaGACGTGTTCCATGGGAATCAGTCGCTCCAGCTCT +
Preference number: 3 (lower is better)
Translates to: LCSSYCRTQSGS*TCSMGISRSSS
Trigger: AGAGCTGGAGCGACTGATTCCCATGGAACACGTGCAGCTGCCAGACTGTGTCCTGCAATATGAAGAGCAGAG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000146030.8
3UTR GCA 72 bp TCAGGACATGCTAGTTTCCTGGTCCTCTGTTGCCTCTaGTGCCCTGTCCTCTTCTTCCACAGTCTCTGGCTT +
Preference number: 3 (lower is better)
Translates to: SGHASFLVLCCL*CPVLFFHSLWL
Trigger: AAGCCAGAGACTGTGGAAGAAGAGGACAGGGCAGCAGAGGCAACAGAGGACCAGGAAACTAGCATGTCCTGA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000146030.8
3UTR GCA 72 bp GGTAGATCAGGACATGCTAGTTTCCTGGTCCTCTGTTaGCTCTGCTGCCCTGTCCTCTTCTTCCACAGTCTC +
Preference number: 3 (lower is better)
Translates to: GRSGHASFLVLC*LCCPVLFFHSL
Trigger: GAGACTGTGGAAGAAGAGGACAGGGCAGCAGAGGCAACAGAGGACCAGGAAACTAGCATGTCCTGATCTACC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000146030.8
3UTR CCA 72 bp CCCCACCGTCTCTGTGTTTATAACTGCACAATTTGCTaGTGGGCGGTGGACACTGTTGCTCTGGGTCACTTG +
Preference number: 3 (lower is better)
Translates to: PHRLCVYNCTIC*WAVDTVALGHL
Trigger: CAAGTGACCCAGAGCAACAGTGTCCACCGCCCACCAGCAAATTGTGCAGTTATAAACACAGAGACGGTGGGG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000047408.6
ENSMUST00000146030.8
3UTR CCA 72 bp TCGGAGTCTCTGCTCTTCATATTGCAGGACACAGTCTaGCAGCTGCACGTGTTCCATGGGAATCAGTCGCTC +
Preference number: 3 (lower is better)
Translates to: SESLLFILQDTV*QLHVFHGNQSL
Trigger: GAGCGACTGATTCCCATGGAACACGTGCAGCTGCCAGACTGTGTCCTGCAATATGAAGAGCAGAGACTCCGA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000146030.8
3UTR GCA 72 bp CATCCACAAGCCCAGACTGTGAAAGGGTCAAGAACCTaGTCCATTCCGAGATGTGCTCATACCGCCTTCTTC +
Preference number: 3 (lower is better)
Translates to: HPQAQTVKGSRT*SIPRCAHTAFF
Trigger: GAAGAAGGCGGTATGAGCACATCTCGGAATGGAGCAGGTTCTTGACCCTTTCACAGTCTGGGCTTGTGGATG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000047408.6
ENSMUST00000146030.8
3UTR CCA 72 bp GGCGGTGGACACTGTTGCTCTGGGTCACTTGCCAAATaGATCCTGGGTGTCTCAGTAAAGAAATGGAACAGC +
Preference number: 3 (lower is better)
Translates to: GGGHCCSGSLAK*ILGVSVKKWNS
Trigger: GCTGTTCCATTTCTTTACTGAGACACCCAGGATCCATTTGGCAAGTGACCCAGAGCAACAGTGTCCACCGCC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000047408.6
ENSMUST00000146030.8
3UTR CCA 72 bp CTCCATGATGTAGTGATAGTCTGGGGAGCTGCTATCTaGCAGGAAGCAGGCTGCAAACACGATGATGGCGTT +
Preference number: 3 (lower is better)
Translates to: LHDVVIVWGAAI*QEAGCKHDDGV
Trigger: AACGCCATCATCGTGTTTGCAGCCTGCTTCCTGCCAGATAGCAGCTCCCCAGACTATCACTACATCATGGAG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000146030.8
3UTR-3UTR CAA 90 bp GAGGCCGAGAAGCAAGAAACATGTCAGAGGGGACACCTCACAGTGGGGTGGATATCCCACTCAAGTTCATaGCCATTTCCCAAGAACTCC +
Preference number: 3 (lower is better)
Translates to: EAEKQETCQRGHLTVGWISHSSS*PFPKNS
Trigger: GGAGTTCTTGGGAAATGGCAATGAACTTGAGTGGGA...TATCCACCCCACTGTGAGGTGTCCCCTCTGACATGTTTCTTGCTTCTCGGCCTC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000146030.8
3UTR-3UTR CAA 90 bp CTGGTCTGGGCAGAGGATAGGAAAGTGGATACAACTTCTTCCCTTGGAATGAGGACATGTGCAATGGGCTaGAAGGCCCCCAAAGACAGT +
Preference number: 3 (lower is better)
Translates to: LVWAEDRKVDTTSSLGMRTCAMG*KAPKDS
Trigger: ACTGTCTTTGGGGGCCTTCAAGCCCATTGCACATGT...CCTCATTCCAAGGGAAGAAGTTGTATCCACTTTCCTATCCTCTGCCCAGACCAG
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000047408.6
ENSMUST00000146030.8
3UTR-3UTR CAA 90 bp AACTCACAGAAATCCCCCTGCCTCCTATTCCTGAGTGCTGAAATTAAAGGCATATCACCAGGCATGTTTTaGGCGGTGGCCACTGGGGTG +
Preference number: 3 (lower is better)
Translates to: NSQKSPCLLFLSAEIKGISPGMF*AVATGV
Trigger: CACCCCAGTGGCCACCGCCAAAAACATGCCTGGTGA...TATGCCTTTAATTTCAGCACTCAGGAATAGGAGGCAGGGGGATTTCTGTGAGTT
51% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000146030.8
3UTR CCA 72 bp CAAAGACAGTCAAATGGCAGAATAGTGCATGTCAGGTaGAGATGTGAGGTCAGCAGTCACAACCCTGCCTGG +
Preference number: 3 (lower is better)
Translates to: QRQSNGRIVHVR*RCEVSSHNPAW
Trigger: CCAGGCAGGGTTGTGACTGCTGACCTCACATCTCCACCTGACATGCACTATTCTGCCATTTGACTGTCTTTG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000047408.6
ENSMUST00000146030.8
3UTR CCA 72 bp GAGATGGCCAACACAGTGCGAATGAACCAGGAGGGGTaGACGATGATCAGGGACTTTAGATTCTTCCTCAGT +
Preference number: 3 (lower is better)
Translates to: EMANTVRMNQEG*TMIRDFRFFLS
Trigger: ACTGAGGAAGAATCTAAAGTCCCTGATCATCGTCCACCCCTCCTGGTTCATTCGCACTGTGTTGGCCATCTC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000146030.8
3UTR CCA 72 bp GTCTCCTACTTGATGACACAGAGGCTGAGTCTGGTCTaGGCAGAGGATAGGAAAGTGGATACAACTTCTTCC +
Preference number: 3 (lower is better)
Translates to: VSYLMTQRLSLV*AEDRKVDTTSS
Trigger: GGAAGAAGTTGTATCCACTTTCCTATCCTCTGCCCAGACCAGACTCAGCCTCTGTGTCATCAAGTAGGAGAC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000047408.6
ENSMUST00000146030.8
3UTR CCA 72 bp GTACAGGAAGAGATTCTCCATGATGTAGTGATAGTCTaGGGAGCTGCTATCTGGCAGGAAGCAGGCTGCAAA +
Preference number: 3 (lower is better)
Translates to: VQEEILHDVVIV*GAAIWQEAGCK
Trigger: TTTGCAGCCTGCTTCCTGCCAGATAGCAGCTCCCCAGACTATCACTACATCATGGAGAATCTCTTCCTGTAC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000146030.8
3UTR GCA 72 bp TGGCCACTGGGGTGTCATCTTCCCACTCAAGTTCATTaGCATTTCCCAAGAACTCCAGAGAGTCAGTTTCAT +
Preference number: 3 (lower is better)
Translates to: WPLGCHLPTQVH*HFPRTPESQFH
Trigger: ATGAAACTGACTCTCTGGAGTTCTTGGGAAATGGCAATGAACTTGAGTGGGAAGATGACACCCCAGTGGCCA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000146030.8
3UTR-3UTR CAA 90 bp CCTGGATCTTCATCTTTCTTCTCAGACACCAAATGTCTCCTACTTGATGACACAGGGCAGACATGTGCTTaGAGCCCAGCTTGGAGATCA +
Preference number: 3 (lower is better)
Translates to: PGSSSFFSDTKCLLLDDTGQTCA*SPAWRS
Trigger: TGATCTCCAAGCTGGGCTCAAAGCACATGTCTGCCC...TGTGTCATCAAGTAGGAGACATTTGGTGTCTGAGAAGAAAGATGAAGATCCAGG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000047408.6
ENSMUST00000146030.8
3UTR TCA 72 bp ATCAGTCGCTCCAGCTCTTCCAGGCTGTGCACGTACTaGATTTTACTGATGAACTTGACACTGATGAATGGC +
Preference number: 3 (lower is better)
Translates to: ISRSSSSRLCTY*ILLMNLTLMNG
Trigger: GCCATTCATCAGTGTCAAGTTCATCAGTAAAATTCAGTACGTGCACAGCCTGGAAGAGCTGGAGCGACTGAT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000146030.8
3UTR-3UTR CAA 90 bp CCTGGATCTTCATCTTTCTTCTCAGACACCAAATGTCTCCTACTTGATGACACAGCAAAGGGTCTCTCATaGGGTCAGCCCAAAATGCAT +
Preference number: 3 (lower is better)
Translates to: PGSSSFFSDTKCLLLDDTAKGLS*GQPKMH
Trigger: ATGCATTTTGGGCTGACCCAATGAGAGACCCTTTGC...TGTGTCATCAAGTAGGAGACATTTGGTGTCTGAGAAGAAAGATGAAGATCCAGG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000047408.6
ENSMUST00000146030.8
3UTR CCA 72 bp GTACTGAATTTTACTGATGAACTTGACACTGATGAATaGCCGGGAGATGGCCAACACAGTGCGAATGAACCA +
Preference number: 3 (lower is better)
Translates to: VLNFTDELDTDE*PGDGQHSANEP
Trigger: TGGTTCATTCGCACTGTGTTGGCCATCTCCCGGCCATTCATCAGTGTCAAGTTCATCAGTAAAATTCAGTAC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000146030.8
3UTR-3UTR CAA 90 bp ATATGCCACCACTGCGCAGTGCTAAGATTTCTTAACATAGAGATACTCAAGTCTCTCAAAATGTTGGGTTaGTTGACCACCAGGCTGATC +
Preference number: 3 (lower is better)
Translates to: ICHHCAVLRFLNIEILKSLKMLG*LTTRLI
Trigger: GATCAGCCTGGTGGTCAACAAACCCAACATTTTGAG...AGACTTGAGTATCTCTATGTTAAGAAATCTTAGCACTGCGCAGTGGTGGCATAT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000047408.6
ENSMUST00000146030.8
3UTR GCA 72 bp TGCCTCCTATTCCTGAGTGCTGAAATTAAAGGCATATaGCACCACTGCGCAGTGCTAAGATTTCTTAACATA +
Preference number: 3 (lower is better)
Translates to: CLLFLSAEIKGI*HHCAVLRFLNI
Trigger: TATGTTAAGAAATCTTAGCACTGCGCAGTGGTGGCATATGCCTTTAATTTCAGCACTCAGGAATAGGAGGCA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000047408.6
ENSMUST00000146030.8
3UTR GCA 72 bp TTCCTGAGTGCTGAAATTAAAGGCATATGCCACCACTaGGCAGTGCTAAGATTTCTTAACATAGAGATACTC +
Preference number: 3 (lower is better)
Translates to: FLSAEIKGICHH*AVLRFLNIEIL
Trigger: GAGTATCTCTATGTTAAGAAATCTTAGCACTGCGCAGTGGTGGCATATGCCTTTAATTTCAGCACTCAGGAA
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000047408.6
ENSMUST00000146030.8
3UTR CCA 72 bp AACTTCTTCCCTTGGAATGAGGTGTCAGTTAACATCTaGAGTCACATCTACTTTAAAGGAGCTCAAAATGTT +
Preference number: 3 (lower is better)
Translates to: NFFPWNEVSVNI*SHIYFKGAQNV
Trigger: AACATTTTGAGCTCCTTTAAAGTAGATGTGACTCCAGATGTTAACTGACACCTCATTCCAAGGGAAGAAGTT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000047408.6
ENSMUST00000146030.8
CDS-3UTR TCA 90 bp GTTGGCCGCACTGCCGTCTTCCGCAGAGCCGTCCCCAAACAGGTCCGCACTGTCCAGGGTGGAGGGAGGTaGGGAGGAGTCTTCCACTGC +
Preference number: 4 (lower is better)
Translates to: VGRTAVFRRAVPKQVRTVQGGGR*GGVFHC
Trigger: GCAGTGGAAGACTCCTCCTCACCTCCCTCCACCCTG...GACAGTGCGGACCTGTTTGGGGACGGCTCTGCGGAAGACGGCAGTGCGGCCAAC
66% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000146030.8
CDS-3UTR CCA 90 bp GATGGAGCAGGTGGCCCCCACTGGAGTTCCTGGGCTTGGAGGCAGGACCTTAGAGAACTCCGGCTGCGGTaGCCGTGTGCTCTCCCTCTT +
Preference number: 4 (lower is better)
Translates to: DGAGGPHWSSWAWRQDLRELRLR*PCALPL
Trigger: AAGAGGGAGAGCACACGGCCACCGCAGCCGGAGTTC...TCTAAGGTCCTGCCTCCAAGCCCAGGAACTCCAGTGGGGGCCACCTGCTCCATC
63% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000047408.6
CDS-3UTR TCA 90 bp CGTGGGTGGCACTGCCCACATCCACCTTTGGCATCCACAAGCCCAGACTGTGAAGGTCCAGGGAGATGTTaGTCTCTGGAGCCACCAGCG +
Preference number: 4 (lower is better)
Translates to: RGWHCPHPPLASTSPDCEGPGRC*SLEPPA
Trigger: CGCTGGTGGCTCCAGAGATCAACATCTCCCTGGACC...TTCACAGTCTGGGCTTGTGGATGCCAAAGGTGGATGTGGGCAGTGCCACCCACG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000047408.6
ENSMUST00000146030.8
CDS-3UTR GCA 90 bp TGCAGCCAGGGCCACCAGACATCTGAGGCTCCAGCTAGGGACAGGTGGCAACCGTGGCAGGAAGCAGGCTaGAAACACGATGATGGCGTT +
Preference number: 4 (lower is better)
Translates to: CSQGHQTSEAPARDRWQPWQEAG*KHDDGV
Trigger: AACGCCATCATCGTGTTTGCAGCCTGCTTCCTGCCA...CGGTTGCCACCTGTCCCTAGCTGGAGCCTCAGATGTCTGGTGGCCCTGGCTGCA
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000047408.6
3UTR CAA 72 bp AGGAACTCCGGCTGCGGTGGCCGTGTGCTCTCCCTCTaGGCTCGGAGTCTCTGCTCTTCATATTGCAGGACA +
Preference number: 4 (lower is better)
Translates to: RNSGCGGRVLSL*ARSLCSSYCRT
Trigger: TGTCCTGCAATATGAAGAGCAGAGACTCCGAGCCAAGAGGGAGAGCACACGGCCACCGCAGCCGGAGTTCCT
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000146030.8
CDS-3UTR TCA 90 bp GCAGCCAGGGCCACCAGACATCTGAGGCTCCAGCTAGGGACAGGTGGCAACCGAAGGAGGGGTGGACGATaGTCAGGGACTTTAGATTCT +
Preference number: 4 (lower is better)
Translates to: AARATRHLRLQLGTGGNRRRGGR*SGTLDS
Trigger: AGAATCTAAAGTCCCTGATCATCGTCCACCCCTCCT...TCGGTTGCCACCTGTCCCTAGCTGGAGCCTCAGATGTCTGGTGGCCCTGGCTGC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000047408.6
CDS-3UTR CCA 90 bp AGTAACCGTGGGTGGCACTGCCCACATCCACCTTTGGCATCCACAAGCCCAGACCACCAGGCATGTTTTTaGCGGTGGCCACTGGGGTGT +
Preference number: 4 (lower is better)
Translates to: SNRGWHCPHPPLASTSPDHQACF*RWPLGC
Trigger: ACACCCCAGTGGCCACCGCCAAAAACATGCCTGGTG...GTCTGGGCTTGTGGATGCCAAAGGTGGATGTGGGCAGTGCCACCCACGGTTACT
59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000047408.6
CDS-3UTR CCA 90 bp GATGGAGCAGGTGGCCCCCACTGGAGTTCCTGGGCTTGGAGGCAGGACCTTAGAGCTTTTCTTCTGACCTaGGAAGGAGGAACTCCGGCT +
Preference number: 4 (lower is better)
Translates to: DGAGGPHWSSWAWRQDLRAFLLT*EGGTPA
Trigger: AGCCGGAGTTCCTCCTTCCCAGGTCAGAAGAAAAGC...TCTAAGGTCCTGCCTCCAAGCCCAGGAACTCCAGTGGGGGCCACCTGCTCCATC
59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000047408.6
CDS-3UTR TCA 90 bp GGGTGGTGGTCCCAGGTGTGGGCTAGAATATTAAGCCCCTCGGGGTCTCCTGTTAGTATCCTCCATGGGTaGCCACCTTCATGTAGGGCC +
Preference number: 4 (lower is better)
Translates to: GWWSQVWARILSPSGSPVSILHG*PPSCRA
Trigger: GGCCCTACATGAAGGTGGTCACCCATGGAGGATACT...AACAGGAGACCCCGAGGGGCTTAATATTCTAGCCCACACCTGGGACCACCACCC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000047408.6
CDS-3UTR CCA 90 bp ATGGAGCAGGTGGCCCCCACTGGAGTTCCTGGGCTTGGAGGCAGGACCTTAGACGGAGATGTTGATCTCTaGAGCCACCAGCGTCTTTCT +
Preference number: 4 (lower is better)
Translates to: MEQVAPTGVPGLGGRTLDGDVDL*SHQRLS
Trigger: AGAAAGACGCTGGTGGCTCCAGAGATCAACATCTCC...GTCTAAGGTCCTGCCTCCAAGCCCAGGAACTCCAGTGGGGGCCACCTGCTCCAT
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000047408.6
ENSMUST00000146030.8
CDS-3UTR CCA 90 bp GCAGACATGTGCTTTGAGCCCAGCTTGGAGATCAGGTGGTCGCAGCATCCCACCGTGTGCTCTCCCTCTTaGCTCGGAGTCTCTGCTCTT +
Preference number: 4 (lower is better)
Translates to: ADMCFEPSLEIRWSQHPTVCSPS*LGVSAL
Trigger: AAGAGCAGAGACTCCGAGCCAAGAGGGAGAGCACAC...GGTGGGATGCTGCGACCACCTGATCTCCAAGCTGGGCTCAAAGCACATGTCTGC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000047408.6
CDS-3UTR GCA 90 bp AGTAACCGTGGGTGGCACTGCCCACATCCACCTTTGGCATCCACAAGCCCAGACTGCAGGTCGATGCGATaGTCTTGCTCCCCTATGATG +
Preference number: 4 (lower is better)
Translates to: SNRGWHCPHPPLASTSPDCRSMR*SCSPMM
Trigger: CATCATAGGGGAGCAAGAGCATCGCATCGACCTGCA...GTCTGGGCTTGTGGATGCCAAAGGTGGATGTGGGCAGTGCCACCCACGGTTACT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000047408.6
CDS-3UTR CCA 90 bp AGGTGGAAGCTGCTGTCCTGCGGCCATCAGAGGCCGAGAAGCAAGAAACATGTCTGGGGAGCTGCTATCTaGCAGGAAGCAGGCTGCAAA +
Preference number: 4 (lower is better)
Translates to: RWKLLSCGHQRPRSKKHVWGAAI*QEAGCK
Trigger: TTTGCAGCCTGCTTCCTGCCAGATAGCAGCTCCCCA...GACATGTTTCTTGCTTCTCGGCCTCTGATGGCCGCAGGACAGCAGCTTCCACCT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000047408.6
CDS-3UTR CCA 90 bp GGTGATTCCAAAGGGGCGGTGAGCATGCCATGGCAGCAAGGAGGTGGATGGAGCATGAACCAGGAGGGGTaGACGATGATCAGGGACTTT +
Preference number: 4 (lower is better)
Translates to: GDSKGAVSMPWQQGGGWSMNQEG*TMIRDF
Trigger: AAAGTCCCTGATCATCGTCCACCCCTCCTGGTTCAT...GCTCCATCCACCTCCTTGCTGCCATGGCATGCTCACCGCCCCTTTGGAATCACC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000047408.6
CDS-3UTR CCA 90 bp GCAGACATGTGCTTTGAGCCCAGCTTGGAGATCAGGTGGTCGCAGCATCCCACCTTGCAGGACACAGTCTaGCAGCTGCACGTGTTCCAT +
Preference number: 4 (lower is better)
Translates to: ADMCFEPSLEIRWSQHPTLQDTV*QLHVFH
Trigger: ATGGAACACGTGCAGCTGCCAGACTGTGTCCTGCAA...GGTGGGATGCTGCGACCACCTGATCTCCAAGCTGGGCTCAAAGCACATGTCTGC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000047408.6
3UTR CAA 72 bp GTAGGGCCGGATCATATGCAGGTCGATGCGATGCTCTaGCTCCCCTATGATGACAGTTCGCCACAGACGACC +
Preference number: 4 (lower is better)
Translates to: VGPDHMQVDAML*LPYDDSSPQTT
Trigger: GGTCGTCTGTGGCGAACTGTCATCATAGGGGAGCAAGAGCATCGCATCGACCTGCATATGATCCGGCCCTAC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000146030.8
CDS-3UTR TCA 90 bp AAGGCCTGGAAGAGTAACCGTGGGTGGCACTGCCCACATCCACCTTTGGCATCCCAATGTCGTCCACATTaGTGTCCAGGTCATCAGGTG +
Preference number: 4 (lower is better)
Translates to: KAWKSNRGWHCPHPPLASQCRPH*CPGHQV
Trigger: CACCTGATGACCTGGACATCAATGTGGACGACATTG...GGATGCCAAAGGTGGATGTGGGCAGTGCCACCCACGGTTACTCTTCCAGGCCTT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000047408.6
CDS-3UTR GCA 90 bp CCACAAGCCCAGACTGTGAAAGGGTCAAGAACCTGCTCCATTCCGAGATGTGCTTTCCTGGTCCTCTGTTaGCTCTGCTGCCCTGTCCTC +
Preference number: 4 (lower is better)
Translates to: PQAQTVKGSRTCSIPRCAFLVLC*LCCPVL
Trigger: GAGGACAGGGCAGCAGAGGCAACAGAGGACCAGGAA...AGCACATCTCGGAATGGAGCAGGTTCTTGACCCTTTCACAGTCTGGGCTTGTGG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000047408.6
CDS-3UTR CCA 90 bp GTGGATAGAACCTACCTTTGGGGGAGAGGCACAGAGCTCTCTCTCTCTGTCTGTCGCTCAAGTTCAGGGTaGAGGGAGGTGAGGAGGAGT +
Preference number: 4 (lower is better)
Translates to: VDRTYLWGRGTELSLSVCRSSSG*REVRRS
Trigger: ACTCCTCCTCACCTCCCTCCACCCTGAACTTGAGCG...ACAGACAGAGAGAGAGAGCTCTGTGCCTCTCCCCCAAAGGTAGGTTCTATCCAC
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000047408.6
ENSMUST00000146030.8
CDS-3UTR CCA 90 bp CCTACCTTTGGGGGAGAGGCACAGAGCTCTCTCTCTCTGTCTGTCTCTCTCTCTGCTGCACGTGTTCCATaGGAATCAGTCGCTCCAGCT +
Preference number: 4 (lower is better)
Translates to: PTFGGEAQSSLSLSVSLSAARVP*ESVAPA
Trigger: AGCTGGAGCGACTGATTCCCATGGAACACGTGCAGC...AGAGAGAGAGACAGACAGAGAGAGAGAGCTCTGTGCCTCTCCCCCAAAGGTAGG
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000047408.6
3UTR CAA 72 bp AAGAGTAACCGTGGGTGGCACTGCCCACATCCACCTTaGGCATCCACAAGCCCAGACTGTGAAAGGGTCAAG +
Preference number: 4 (lower is better)
Translates to: KSNRGWHCPHPP*ASTSPDCERVK
Trigger: CTTGACCCTTTCACAGTCTGGGCTTGTGGATGCCAAAGGTGGATGTGGGCAGTGCCACCCACGGTTACTCTT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000047408.6
ENSMUST00000146030.8
3UTR CAA 72 bp GCTCTCCCTCTTGGCTCGGAGTCTCTGCTCTTCATATaGCAGGACACAGTCTGGCAGCTGCACGTGTTCCAT +
Preference number: 4 (lower is better)
Translates to: ALPLGSESLLFI*QDTVWQLHVFH
Trigger: ATGGAACACGTGCAGCTGCCAGACTGTGTCCTGCAATATGAAGAGCAGAGACTCCGAGCCAAGAGGGAGAGC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000146030.8
CDS-3UTR GCA 90 bp CCACAAGCCCAGACTGTGAAAGGGTCAAGAACCTGCTCCATTCCGAGATGTGCTGTCCTCTGTTGCCTCTaGTGCCCTGTCCTCTTCTTC +
Preference number: 4 (lower is better)
Translates to: PQAQTVKGSRTCSIPRCAVLCCL*CPVLFF
Trigger: GAAGAAGAGGACAGGGCAGCAGAGGCAACAGAGGAC...AGCACATCTCGGAATGGAGCAGGTTCTTGACCCTTTCACAGTCTGGGCTTGTGG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000047408.6
CDS-3UTR CCA 90 bp GACACCAAATGTCTCCTACTTGATGACACAGAGGCTGAGTCTGGTCTGGGCAGACGCTCAAGTTCAGGGTaGAGGGAGGTGAGGAGGAGT +
Preference number: 4 (lower is better)
Translates to: DTKCLLLDDTEAESGLGRRSSSG*REVRRS
Trigger: ACTCCTCCTCACCTCCCTCCACCCTGAACTTGAGCG...TCTGCCCAGACCAGACTCAGCCTCTGTGTCATCAAGTAGGAGACATTTGGTGTC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000047408.6
ENSMUST00000146030.8
3UTR CAA 72 bp TGGAGGCAGGACCTTAGACCTTTGGGGACAGCAGGGTaGTGTCCATTCATCCATCCATCCATCCCAGACACA +
Preference number: 4 (lower is better)
Translates to: WRQDLRPLGTAG*CPFIHPSIPDT
Trigger: TGTGTCTGGGATGGATGGATGGATGAATGGACACAACCCTGCTGTCCCCAAAGGTCTAAGGTCCTGCCTCCA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000047408.6
ENSMUST00000146030.8
CDS-3UTR CCA 90 bp CCTACCTTTGGGGGAGAGGCACAGAGCTCTCTCTCTCTGTCTGTCTCTCTCTCTGGAGATGTTGATCTCTaGAGCCACCAGCGTCTTTCT +
Preference number: 4 (lower is better)
Translates to: PTFGGEAQSSLSLSVSLSGDVDL*SHQRLS
Trigger: AGAAAGACGCTGGTGGCTCCAGAGATCAACATCTCC...AGAGAGAGAGACAGACAGAGAGAGAGAGCTCTGTGCCTCTCCCCCAAAGGTAGG
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000047408.6
ENSMUST00000146030.8
CDS-3UTR TCA 90 bp AACTCACAGAAATCCCCCTGCCTCCTATTCCTGAGTGCTGAAATTAAAGGCATACAGGGTGGAGGGAGGTaGGGAGGAGTCTTCCACTGC +
Preference number: 4 (lower is better)
Translates to: NSQKSPCLLFLSAEIKGIQGGGR*GGVFHC
Trigger: GCAGTGGAAGACTCCTCCTCACCTCCCTCCACCCTG...TATGCCTTTAATTTCAGCACTCAGGAATAGGAGGCAGGGGGATTTCTGTGAGTT
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000047408.6
ENSMUST00000146030.8
CDS-3UTR TCA 90 bp GACACCAAATGTCTCCTACTTGATGACACAGAGGCTGAGTCTGGTCTGGGCAGACTCTGGCTTTTCTTCTaGCCTGGGAAGGAGGAACTC +
Preference number: 4 (lower is better)
Translates to: DTKCLLLDDTEAESGLGRLWLFF*PGKEEL
Trigger: GAGTTCCTCCTTCCCAGGTCAGAAGAAAAGCCAGAG...TCTGCCCAGACCAGACTCAGCCTCTGTGTCATCAAGTAGGAGACATTTGGTGTC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000047408.6
CDS-3UTR TCA 90 bp CTGAGTGCTGAAATTAAAGGCATATGCCACCACTGCGCAGTGCTAAGATTTCTTGGTCCAGGGAGATGTTaGTCTCTGGAGCCACCAGCG +
Preference number: 4 (lower is better)
Translates to: LSAEIKGICHHCAVLRFLGPGRC*SLEPPA
Trigger: CGCTGGTGGCTCCAGAGATCAACATCTCCCTGGACC...AAGAAATCTTAGCACTGCGCAGTGGTGGCATATGCCTTTAATTTCAGCACTCAG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000047408.6
ENSMUST00000146030.8
CDS-3UTR GCA 90 bp ATGTGCTCATACCGCCTTCTTCAAAATAAAACAGTGAAATGGACTCAAGCAGTGGGAGGAGTCTTCCACTaGGCCACCCAGCCGCTCCAC +
Preference number: 4 (lower is better)
Translates to: MCSYRLLQNKTVKWTQAVGGVFH*ATQPLH
Trigger: GTGGAGCGGCTGGGTGGCGCAGTGGAAGACTCCTCC...CACTGCTTGAGTCCATTTCACTGTTTTATTTTGAAGAAGGCGGTATGAGCACAT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000047408.6
ENSMUST00000146030.8
CDS-3UTR GCA 90 bp GACACCAAATGTCTCCTACTTGATGACACAGAGGCTGAGTCTGGTCTGGGCAGATCATATGCAGGTCGATaGGATGCTCTTGCTCCCCTA +
Preference number: 4 (lower is better)
Translates to: DTKCLLLDDTEAESGLGRSYAGR*DALAPL
Trigger: TAGGGGAGCAAGAGCATCGCATCGACCTGCATATGA...TCTGCCCAGACCAGACTCAGCCTCTGTGTCATCAAGTAGGAGACATTTGGTGTC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000047408.6
CDS-3UTR GCA 90 bp AACATCTGGAGTCACATCTACTTTAAAGGAGCTCAAAATGTTGGGTTTGTTGACGGAGGAGTCTTCCACTaGGCCACCCAGCCGCTCCAC +
Preference number: 4 (lower is better)
Translates to: NIWSHIYFKGAQNVGFVDGGVFH*ATQPLH
Trigger: GTGGAGCGGCTGGGTGGCGCAGTGGAAGACTCCTCC...GTCAACAAACCCAACATTTTGAGCTCCTTTAAAGTAGATGTGACTCCAGATGTT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000047408.6
ENSMUST00000146030.8
CDS-3UTR GCA 90 bp CTGGTCTGGGCAGAGGATAGGAAAGTGGATACAACTTCTTCCCTTGGAATGAGGCTCTGCTCTTCATATTaGAGGACACAGTCTGGCAGC +
Preference number: 4 (lower is better)
Translates to: LVWAEDRKVDTTSSLGMRLCSSY*RTQSGS
Trigger: GCTGCCAGACTGTGTCCTGCAATATGAAGAGCAGAG...CCTCATTCCAAGGGAAGAAGTTGTATCCACTTTCCTATCCTCTGCCCAGACCAG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000047408.6
CDS-3UTR CCA 90 bp AACTCACAGAAATCCCCCTGCCTCCTATTCCTGAGTGCTGAAATTAAAGGCATATTTGGCGGTGGCCACTaGGGTGTCATCTTCCCACTC +
Preference number: 4 (lower is better)
Translates to: NSQKSPCLLFLSAEIKGIFGGGH*GVIFPL
Trigger: GAGTGGGAAGATGACACCCCAGTGGCCACCGCCAAA...TATGCCTTTAATTTCAGCACTCAGGAATAGGAGGCAGGGGGATTTCTGTGAGTT
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000047408.6
3UTR CAA 72 bp CTAGGGACAGGTGGCAACCGAGCAAAGGGTCTCTCATaGGGTCAGCCCAAAATGCATATCTGTGTTATCCTA +
Preference number: 4 (lower is better)
Translates to: LGTGGNRAKGLS*GQPKMHICVIL
Trigger: TAGGATAACACAGATATGCATTTTGGGCTGACCCAATGAGAGACCCTTTGCTCGGTTGCCACCTGTCCCTAG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000047408.6
ENSMUST00000146030.8
3UTR CAA 72 bp TTCTGGACAGGGTCTCACTATGTAGCCCTTGCTATCTaGGAACTCACAGAAATCCCCCTGCCTCCTATTCCT +
Preference number: 4 (lower is better)
Translates to: FWTGSHYVALAI*ELTEIPLPPIP
Trigger: AGGAATAGGAGGCAGGGGGATTTCTGTGAGTTCCAAGATAGCAAGGGCTACATAGTGAGACCCTGTCCAGAA
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000047408.6
ENSMUST00000146030.8
3UTR CAA 72 bp GTGGCCACTGGGGTGTCATCTTCCCACTCAAGTTCATaGCCATTTCCCAAGAACTCCAGAGAGTCAGTTTCA +
Preference number: 4 (lower is better)
Translates to: VATGVSSSHSSS*PFPKNSRESVS
Trigger: TGAAACTGACTCTCTGGAGTTCTTGGGAAATGGCAATGAACTTGAGTGGGAAGATGACACCCCAGTGGCCAC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000146030.8
CDS-3UTR TCA 90 bp ATATGCCACCACTGCGCAGTGCTAAGATTTCTTAACATAGAGATACTCAAGTCTCCAACACAGTGCGAATaGACCAGGAGGGGTGGACGA +
Preference number: 4 (lower is better)
Translates to: ICHHCAVLRFLNIEILKSPTQCE*TRRGGR
Trigger: TCGTCCACCCCTCCTGGTTCATTCGCACTGTGTTGG...AGACTTGAGTATCTCTATGTTAAGAAATCTTAGCACTGCGCAGTGGTGGCATAT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000047408.6
CDS-3UTR GCA 90 bp GATCAGTACATGTGCAATGGGCTTGAAGGCCCCCAAAGACAGTCAAATGGCAGACCCACTCAAGTTCATTaGCATTTCCCAAGAACTCCA +
Preference number: 4 (lower is better)
Translates to: DQYMCNGLEGPQRQSNGRPTQVH*HFPRTP
Trigger: TGGAGTTCTTGGGAAATGGCAATGAACTTGAGTGGG...TCTGCCATTTGACTGTCTTTGGGGGCCTTCAAGCCCATTGCACATGTACTGATC
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000047408.6
CDS-3UTR GCA 90 bp ATATGCCACCACTGCGCAGTGCTAAGATTTCTTAACATAGAGATACTCAAGTCTTCTTCAGCCAACCAATaGCAGGCATCCTCCTCCGGG +
Preference number: 4 (lower is better)
Translates to: ICHHCAVLRFLNIEILKSSSANQ*QASSSG
Trigger: CCCGGAGGAGGATGCCTGGCATTGGTTGGCTGAAGA...AGACTTGAGTATCTCTATGTTAAGAAATCTTAGCACTGCGCAGTGGTGGCATAT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000047408.6
CDS-3UTR TCA 90 bp CTGGTCTGGGCAGAGGATAGGAAAGTGGATACAACTTCTTCCCTTGGAATGAGGAGGCTGTGCACGTACTaGATTTTACTGATGAACTTG +
Preference number: 4 (lower is better)
Translates to: LVWAEDRKVDTTSSLGMRRLCTY*ILLMNL
Trigger: CAAGTTCATCAGTAAAATTCAGTACGTGCACAGCCT...CCTCATTCCAAGGGAAGAAGTTGTATCCACTTTCCTATCCTCTGCCCAGACCAG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000047408.6
CDS-3UTR GCA 90 bp ATGTGCTCATACCGCCTTCTTCAAAATAAAACAGTGAAATGGACTCAAGCAGTGACACAGTCTGGCAGCTaGACGTGTTCCATGGGAATC +
Preference number: 4 (lower is better)
Translates to: MCSYRLLQNKTVKWTQAVTQSGS*TCSMGI
Trigger: GATTCCCATGGAACACGTGCAGCTGCCAGACTGTGT...CACTGCTTGAGTCCATTTCACTGTTTTATTTTGAAGAAGGCGGTATGAGCACAT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000047408.6
CDS-3UTR GCA 90 bp CCTGGATCTTCATCTTTCTTCTCAGACACCAAATGTCTCCTACTTGATGACACATTGGCTCGGAGTCTCTaGTCTTCATATTGCAGGACA +
Preference number: 4 (lower is better)
Translates to: PGSSSFFSDTKCLLLDDTLARSL*SSYCRT
Trigger: TGTCCTGCAATATGAAGAGCAGAGACTCCGAGCCAA...TGTGTCATCAAGTAGGAGACATTTGGTGTCTGAGAAGAAAGATGAAGATCCAGG
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000047408.6
CDS-3UTR CCA 90 bp ATGTGCTCATACCGCCTTCTTCAAAATAAAACAGTGAAATGGACTCAAGCAGTGGACATGCTAGTTTCCTaGTCCTCTGTTGCCTCTGCT +
Preference number: 4 (lower is better)
Translates to: MCSYRLLQNKTVKWTQAVDMLVS*SSVASA
Trigger: AGCAGAGGCAACAGAGGACCAGGAAACTAGCATGTC...CACTGCTTGAGTCCATTTCACTGTTTTATTTTGAAGAAGGCGGTATGAGCACAT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000047408.6
3UTR CAA 72 bp GTCACATCTACTTTAAAGGAGCTCAAAATGTTGGGTTaGTTGACCACCAGGCTGATCAGTACATGTGCAATG +
Preference number: 4 (lower is better)
Translates to: VTSTLKELKMLG*LTTRLISTCAM
Trigger: CATTGCACATGTACTGATCAGCCTGGTGGTCAACAAACCCAACATTTTGAGCTCCTTTAAAGTAGATGTGAC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000047408.6
ENSMUST00000146030.8
3UTR CAA 72 bp TCTGGAGTCACATCTACTTTAAAGGAGCTCAAAATGTaGGGTTTGTTGACCACCAGGCTGATCAGTACATGT +
Preference number: 4 (lower is better)
Translates to: SGVTSTLKELKM*GLLTTRLISTC
Trigger: ACATGTACTGATCAGCCTGGTGGTCAACAAACCCAACATTTTGAGCTCCTTTAAAGTAGATGTGACTCCAGA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000047408.6
ENSMUST00000146030.8
CDS-3UTR CAA 90 bp GTTGGCCGCACTGCCGTCTTCCGCAGAGCCGTCCCCAAACAGGTCCGCACTGTCTGGTCCAGGGAGATGTaGATCTCTGGAGCCACCAGC +
Preference number: 5 (lower is better)
Translates to: VGRTAVFRRAVPKQVRTVWSREM*ISGATS
Trigger: GCTGGTGGCTCCAGAGATCAACATCTCCCTGGACCA...GACAGTGCGGACCTGTTTGGGGACGGCTCTGCGGAAGACGGCAGTGCGGCCAAC
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000146030.8
CDS TCA 90 bp CTTTCTCTTTCGATGTGCTCCGCTCAAGTTCAGGGTGGAGGGAGGTaGGGAGGAGTCTTCCACTGCGCCACCCAGCCGCTCCACCCCGGT +
Preference number: 5 (lower is better)
Translates to: LSLSMCSAQVQGGGR*GGVFHCATQPLHPG
Trigger: ACCGGGGTGGAGCGGCTGGGTGGCGCAGTGGAAGACTCCTCCTCACCTCCCTCCACCCTGAACTTGAGCGGAGCACATCGAAAGAGAAAG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000047408.6
ENSMUST00000146030.8
CDS CCA 90 bp CTGCGCCACCCAGCCGCTCCACCCCGGTGTCTTCTGGGAGCGGTCTaGGCAGATCCTCATCCTGCCATTCATCCCTCACGTCCACATTTT +
Preference number: 5 (lower is better)
Translates to: LRHPAAPPRCLLGAV*ADPHPAIHPSRPHF
Trigger: AAAATGTGGACGTGAGGGATGAATGGCAGGATGAGGATCTGCCCAGACCGCTCCCAGAAGACACCGGGGTGGAGCGGCTGGGTGGCGCAG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000047408.6
CDS-3UTR CAA 90 bp GCCAAGAGGGGCTGTCTGTGGACCTGGCCCCAGGCACCATCTTGGTTCTCATCTTTTCCTGGTCCTCTGTaGCCTCTGCTGCCCTGTCCT +
Preference number: 5 (lower is better)
Translates to: AKRGCLWTWPQAPSWFSSFPGPL*PLLPCP
Trigger: AGGACAGGGCAGCAGAGGCAACAGAGGACCAGGAAA...AGATGAGAACCAAGATGGTGCCTGGGGCCAGGTCCACAGACAGCCCCTCTTGGC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000047408.6
CDS CCA 90 bp CACCCCGGTGTCTTCTGGGAGCGGTCTGCAGAAGCCGCCAAGGACTaGGCAGATCCTCATCCTGCCATTCATCCCTCACGTCCACATTTT +
Preference number: 5 (lower is better)
Translates to: HPGVFWERSAEAAKD*ADPHPAIHPSRPHF
Trigger: AAAATGTGGACGTGAGGGATGAATGGCAGGATGAGGATCTGCCCAGTCCTTGGCGGCTTCTGCAGACCGCTCCCAGAAGACACCGGGGTG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000146030.8
CDS-3UTR CAA 90 bp AGGTGGAAGCTGCTGTCCTGCGGCCATCAGAGGCCGAGAAGCAAGAAACATGTCTCACCAGGCATGTTTTaGGCGGTGGCCACTGGGGTG +
Preference number: 5 (lower is better)
Translates to: RWKLLSCGHQRPRSKKHVSPGMF*AVATGV
Trigger: CACCCCAGTGGCCACCGCCAAAAACATGCCTGGTGA...GACATGTTTCTTGCTTCTCGGCCTCTGATGGCCGCAGGACAGCAGCTTCCACCT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000047408.6
CDS TCA 90 bp AGTCGTCGGACAGCAGAGAGCCCTCGCTTTGGTCCAGGGAGATGTTaGTCTCTGGAGCCACCAGCGTCTTTCTCTTTCGATGTGCTCCGC +
Preference number: 5 (lower is better)
Translates to: SRRTAESPRFGPGRC*SLEPPASFSFDVLR
Trigger: GCGGAGCACATCGAAAGAGAAAGACGCTGGTGGCTCCAGAGATCAACATCTCCCTGGACCAAAGCGAGGGCTCTCTGCTGTCCGACGACT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000047408.6
ENSMUST00000146030.8
CDS CCA 90 bp TCAGGTGTGTCGAGGAAGTCGTCGGACAGCAGAGAGCCCTCGCTTTaGTCCAGGGAGATGTTGATCTCTGGAGCCACCAGCGTCTTTCTC +
Preference number: 5 (lower is better)
Translates to: SGVSRKSSDSREPSL*SREMLISGATSVFL
Trigger: GAGAAAGACGCTGGTGGCTCCAGAGATCAACATCTCCCTGGACCAAAGCGAGGGCTCTCTGCTGTCCGACGACTTCCTCGACACACCTGA
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000047408.6
ENSMUST00000146030.8
CDS-3UTR CAA 90 bp AGGTGGAAGCTGCTGTCCTGCGGCCATCAGAGGCCGAGAAGCAAGAAACATGTCTGGTCCAGGGAGATGTaGATCTCTGGAGCCACCAGC +
Preference number: 5 (lower is better)
Translates to: RWKLLSCGHQRPRSKKHVWSREM*ISGATS
Trigger: GCTGGTGGCTCCAGAGATCAACATCTCCCTGGACCA...GACATGTTTCTTGCTTCTCGGCCTCTGATGGCCGCAGGACAGCAGCTTCCACCT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000047408.6
ENSMUST00000146030.8
CDS GCA 90 bp GGAGCGGTCTGCAGAAGCCGCCAAGGACTGGGCAGATCCTCATCCTaGCATTCATCCCTCACGTCCACATTTTCCATCCTTAGTGTAGCT +
Preference number: 5 (lower is better)
Translates to: GAVCRSRQGLGRSSS*HSSLTSTFSILSVA
Trigger: AGCTACACTAAGGATGGAAAATGTGGACGTGAGGGATGAATGGCAGGATGAGGATCTGCCCAGTCCTTGGCGGCTTCTGCAGACCGCTCC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000146030.8
CDS CCA 90 bp GGACAGCAGAGAGCCCTCGCTTTGGTCCAGGGAGATGTTGATCTCTaGAGCCACCAGCGTCTTTCTCTTTCGATGTGCTCCGCTCAAGTT +
Preference number: 5 (lower is better)
Translates to: GQQRALALVQGDVDL*SHQRLSLSMCSAQV
Trigger: AACTTGAGCGGAGCACATCGAAAGAGAAAGACGCTGGTGGCTCCAGAGATCAACATCTCCCTGGACCAAAGCGAGGGCTCTCTGCTGTCC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000047408.6
ENSMUST00000146030.8
CDS-3UTR CAA 90 bp GACACCAAATGTCTCCTACTTGATGACACAGAGGCTGAGTCTGGTCTGGGCAGATCAATGTCGTCCACATaGATGTCCAGGTCATCAGGT +
Preference number: 5 (lower is better)
Translates to: DTKCLLLDDTEAESGLGRSMSST*MSRSSG
Trigger: ACCTGATGACCTGGACATCAATGTGGACGACATTGA...TCTGCCCAGACCAGACTCAGCCTCTGTGTCATCAAGTAGGAGACATTTGGTGTC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000047408.6
CDS CCA 72 bp CACTGCGCCACCCAGCCGCTCCACCCCGGTGTCTTCTaGGAGCGGTCTGGGCAGATCCTCATCCTGCCATTC +
Preference number: 6 (lower is better)
Translates to: HCATQPLHPGVF*ERSGQILILPF
Trigger: GAATGGCAGGATGAGGATCTGCCCAGACCGCTCCCAGAAGACACCGGGGTGGAGCGGCTGGGTGGCGCAGTG
67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000047408.6
CDS TCA 72 bp TCGATGTGCTCCGCTCAAGTTCAGGGTGGAGGGAGGTaGGGAGGAGTCTTCCACTGCGCCACCCAGCCGCTC +
Preference number: 6 (lower is better)
Translates to: SMCSAQVQGGGR*GGVFHCATQPL
Trigger: GAGCGGCTGGGTGGCGCAGTGGAAGACTCCTCCTCACCTCCCTCCACCCTGAACTTGAGCGGAGCACATCGA
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000047408.6
ENSMUST00000146030.8
CDS CCA 72 bp TCGAGGAAGTCGTCGGACAGCAGAGAGCCCTCGCTTTaGTCCAGGGAGATGTTGATCTCTGGAGCCACCAGC +
Preference number: 6 (lower is better)
Translates to: SRKSSDSREPSL*SREMLISGATS
Trigger: GCTGGTGGCTCCAGAGATCAACATCTCCCTGGACCAAAGCGAGGGCTCTCTGCTGTCCGACGACTTCCTCGA
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000047408.6
ENSMUST00000146030.8
CDS CCA 72 bp GTCTTCTGGGAGCGGTCTGCAGAAGCCGCCAAGGACTaGGCAGATCCTCATCCTGCCATTCATCCCTCACGT +
Preference number: 6 (lower is better)
Translates to: VFWERSAEAAKD*ADPHPAIHPSR
Trigger: ACGTGAGGGATGAATGGCAGGATGAGGATCTGCCCAGTCCTTGGCGGCTTCTGCAGACCGCTCCCAGAAGAC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000146030.8
CDS CAA 72 bp GTCGAGGAAGTCGTCGGACAGCAGAGAGCCCTCGCTTaGGTCCAGGGAGATGTTGATCTCTGGAGCCACCAG +
Preference number: 6 (lower is better)
Translates to: VEEVVGQQRALA*VQGDVDLWSHQ
Trigger: CTGGTGGCTCCAGAGATCAACATCTCCCTGGACCAAAGCGAGGGCTCTCTGCTGTCCGACGACTTCCTCGAC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000047408.6
ENSMUST00000146030.8
CDS CAA 90 bp AAGTCGTCGGACAGCAGAGAGCCCTCGCTTTGGTCCAGGGAGATGTaGATCTCTGGAGCCACCAGCGTCTTTCTCTTTCGATGTGCTCCG +
Preference number: 6 (lower is better)
Translates to: KSSDSREPSLWSREM*ISGATSVFLFRCAP
Trigger: CGGAGCACATCGAAAGAGAAAGACGCTGGTGGCTCCAGAGATCAACATCTCCCTGGACCAAAGCGAGGGCTCTCTGCTGTCCGACGACTT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000047408.6
ENSMUST00000146030.8
CDS CAA 90 bp ATCAGGTGTGTCGAGGAAGTCGTCGGACAGCAGAGAGCCCTCGCTTaGGTCCAGGGAGATGTTGATCTCTGGAGCCACCAGCGTCTTTCT +
Preference number: 6 (lower is better)
Translates to: IRCVEEVVGQQRALA*VQGDVDLWSHQRLS
Trigger: AGAAAGACGCTGGTGGCTCCAGAGATCAACATCTCCCTGGACCAAAGCGAGGGCTCTCTGCTGTCCGACGACTTCCTCGACACACCTGAT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000047408.6
CDS CCA 72 bp TCTTTCTCTTTCGATGTGCTCCGCTCAAGTTCAGGGTaGAGGGAGGTGAGGAGGAGTCTTCCACTGCGCCAC +
Preference number: 6 (lower is better)
Translates to: SFSFDVLRSSSG*REVRRSLPLRH
Trigger: GTGGCGCAGTGGAAGACTCCTCCTCACCTCCCTCCACCCTGAACTTGAGCGGAGCACATCGAAAGAGAAAGA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000047408.6
ENSMUST00000146030.8
CDS CAA 72 bp GAGTCAGTTTCATCTGGCGTCTCAATGTCGTCCACATaGATGTCCAGGTCATCAGGTGTGTCGAGGAAGTCG +
Preference number: 6 (lower is better)
Translates to: ESVSSGVSMSST*MSRSSGVSRKS
Trigger: CGACTTCCTCGACACACCTGATGACCTGGACATCAATGTGGACGACATTGAGACGCCAGATGAAACTGACTC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000047408.6
CDS TCA 72 bp AGTCAGTTTCATCTGGCGTCTCAATGTCGTCCACATTaGTGTCCAGGTCATCAGGTGTGTCGAGGAAGTCGT +
Preference number: 6 (lower is better)
Translates to: SQFHLASQCRPH*CPGHQVCRGSR
Trigger: ACGACTTCCTCGACACACCTGATGACCTGGACATCAATGTGGACGACATTGAGACGCCAGATGAAACTGACT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000047408.6