RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for ATAD5 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000017550

Ensembl transcript IDs: ENSMUST00000017694.7, ENSMUST00000108239.7

Found 356 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR TCA 90 bp TTGAGTTGGCAAGATTCACTGGACTGTGTAACTACAGGGAGTGAGTaGCAGATGGTCTTATCTAGGCAAATGCTAGAATTCAGAAGGCTT +
Preference number: 1 (lower is better)
Translates to: LSWQDSLDCVTTGSE*QMVLSRQMLEFRRL
Trigger: AAGCCTTCTGAATTCTAGCATTTGCCTAGATAAGACCATCTGTCACTCACTCCCTGTAGTTACACAGTCCAGTGAATCTTGCCAACTCAA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000017694.7
ENSMUST00000108239.7
3UTR CCA 90 bp ATAACTGTTTTCCATTGTGTAACTTTAGAGACTGCCTATTTACAGTaGCACAGCTCTGCTGCTTGGCAGGAGAGGACAATTACAGGAAAA +
Preference number: 1 (lower is better)
Translates to: ITVFHCVTLETAYLQ*HSSAAWQERTITGK
Trigger: TTTTCCTGTAATTGTCCTCTCCTGCCAAGCAGCAGAGCTGTGCCACTGTAAATAGGCAGTCTCTAAAGTTACACAATGGAAAACAGTTAT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000017694.7
ENSMUST00000108239.7
3UTR CCA 90 bp CTTTACTCTGCCAGTGCTAATGACTCAATGATTACATGTAAAACGTaGTGGAAGAAGGCACAAGAAACAAAGGCAATGCTTTTCACAACC +
Preference number: 1 (lower is better)
Translates to: LYSASANDSMITCKT*WKKAQETKAMLFTT
Trigger: GGTTGTGAAAAGCATTGCCTTTGTTTCTTGTGCCTTCTTCCACCACGTTTTACATGTAATCATTGAGTCATTAGCACTGGCAGAGTAAAG
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000017694.7
ENSMUST00000108239.7
3UTR-3UTR CCA 90 bp AAGGAGCTTGAGACGGGGATTACAAAATTCTGGAAGGAGATTAGGAGTAGCCTACACAGCTCTGCTGCTTaGCAGGAGAGGACAATTACA +
Preference number: 2 (lower is better)
Translates to: KELETGITKFWKEIRSSLHSSAA*QERTIT
Trigger: TGTAATTGTCCTCTCCTGCCAAGCAGCAGAGCTGTG...TAGGCTACTCCTAATCTCCTTCCAGAATTTTGTAATCCCCGTCTCAAGCTCCTT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000017694.7
ENSMUST00000108239.7
3UTR-3UTR TCA 90 bp AAGGAGCTTGAGACGGGGATTACAAAATTCTGGAAGGAGATTAGGAGTAGCCTAACTACAGGGAGTGAGTaGCAGATGGTCTTATCTAGG +
Preference number: 2 (lower is better)
Translates to: KELETGITKFWKEIRSSLTTGSE*QMVLSR
Trigger: CCTAGATAAGACCATCTGTCACTCACTCCCTGTAGT...TAGGCTACTCCTAATCTCCTTCCAGAATTTTGTAATCCCCGTCTCAAGCTCCTT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000017694.7
ENSMUST00000108239.7
3UTR-3UTR GCA 90 bp AAGGAGCTTGAGACGGGGATTACAAAATTCTGGAAGGAGATTAGGAGTAGCCTACAATATACCAGACCCTaGCTCAAAAACAGGATGGGG +
Preference number: 2 (lower is better)
Translates to: KELETGITKFWKEIRSSLQYTRP*LKNRMG
Trigger: CCCCATCCTGTTTTTGAGGCAGGGTCTGGTATATTG...TAGGCTACTCCTAATCTCCTTCCAGAATTTTGTAATCCCCGTCTCAAGCTCCTT
46% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000017694.7
ENSMUST00000108239.7
3UTR-3UTR TCA 90 bp AAGGAGCTTGAGACGGGGATTACAAAATTCTGGAAGGAGATTAGGAGTAGCCTAAGGAAAAGGGAAAAATaGCAGGTAAGCTTAGAACTG +
Preference number: 2 (lower is better)
Translates to: KELETGITKFWKEIRSSLRKREK*QVSLEL
Trigger: CAGTTCTAAGCTTACCTGTCATTTTTCCCTTTTCCT...TAGGCTACTCCTAATCTCCTTCCAGAATTTTGTAATCCCCGTCTCAAGCTCCTT
42% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 2 transcripts:
ENSMUST00000017694.7
ENSMUST00000108239.7
3UTR-3UTR GCA 90 bp AAGGAGCTTGAGACGGGGATTACAAAATTCTGGAAGGAGATTAGGAGTAGCCTAAAGAAACAAAGGCAATaGTTTTCACAACCGAGGCAT +
Preference number: 2 (lower is better)
Translates to: KELETGITKFWKEIRSSLKKQRQ*FSQPRH
Trigger: ATGCCTCGGTTGTGAAAAGCATTGCCTTTGTTTCTT...TAGGCTACTCCTAATCTCCTTCCAGAATTTTGTAATCCCCGTCTCAAGCTCCTT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000017694.7
ENSMUST00000108239.7
3UTR GCA 72 bp TTTAGAGACTGCCTATTTACAGTGGCACAGCTCTGCTaGTTGGCAGGAGAGGACAATTACAGGAAAAGGGAA +
Preference number: 3 (lower is better)
Translates to: FRDCLFTVAQLC*LAGEDNYRKRE
Trigger: TTCCCTTTTCCTGTAATTGTCCTCTCCTGCCAAGCAGCAGAGCTGTGCCACTGTAAATAGGCAGTCTCTAAA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000017694.7
ENSMUST00000108239.7
3UTR GCA 72 bp AACTTTAGAGACTGCCTATTTACAGTGGCACAGCTCTaGTGCTTGGCAGGAGAGGACAATTACAGGAAAAGG +
Preference number: 3 (lower is better)
Translates to: NFRDCLFTVAQL*CLAGEDNYRKR
Trigger: CCTTTTCCTGTAATTGTCCTCTCCTGCCAAGCAGCAGAGCTGTGCCACTGTAAATAGGCAGTCTCTAAAGTT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000017694.7
ENSMUST00000108239.7
3UTR CCA 72 bp GAGACTGCCTATTTACAGTGGCACAGCTCTGCTGCTTaGCAGGAGAGGACAATTACAGGAAAAGGGAAAAAT +
Preference number: 3 (lower is better)
Translates to: ETAYLQWHSSAA*QERTITGKGKN
Trigger: ATTTTTCCCTTTTCCTGTAATTGTCCTCTCCTGCCAAGCAGCAGAGCTGTGCCACTGTAAATAGGCAGTCTC
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000017694.7
ENSMUST00000108239.7
3UTR TCA 72 bp CAAGATTCACTGGACTGTGTAACTACAGGGAGTGAGTaGCAGATGGTCTTATCTAGGCAAATGCTAGAATTC +
Preference number: 3 (lower is better)
Translates to: QDSLDCVTTGSE*QMVLSRQMLEF
Trigger: GAATTCTAGCATTTGCCTAGATAAGACCATCTGTCACTCACTCCCTGTAGTTACACAGTCCAGTGAATCTTG
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000017694.7
ENSMUST00000108239.7
3UTR TCA 72 bp GGTAGAAGCCCCATGGTAGAATCCGTCATTACTTCTTaGACCATCAACAAGTTGTCCACAACAGATAAACAG +
Preference number: 3 (lower is better)
Translates to: GRSPMVESVITS*TINKLSTTDKQ
Trigger: CTGTTTATCTGTTGTGGACAACTTGTTGATGGTTCAAGAAGTAATGACGGATTCTACCATGGGGCTTCTACC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000017694.7
ENSMUST00000108239.7
3UTR GCA 72 bp GTACATAACTGTTTTCCATTGTGTAACTTTAGAGACTaGCTATTTACAGTGGCACAGCTCTGCTGCTTGGCA +
Preference number: 3 (lower is better)
Translates to: VHNCFPLCNFRD*LFTVAQLCCLA
Trigger: TGCCAAGCAGCAGAGCTGTGCCACTGTAAATAGGCAGTCTCTAAAGTTACACAATGGAAAACAGTTATGTAC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000017694.7
ENSMUST00000108239.7
3UTR CCA 72 bp GTACTGAAGGAGCTTGAGACGGGGATTACAAAATTCTaGAAGGAGATTAGGAGTAGCCTAAGCAATATACCA +
Preference number: 3 (lower is better)
Translates to: VLKELETGITKF*KEIRSSLSNIP
Trigger: TGGTATATTGCTTAGGCTACTCCTAATCTCCTTCCAGAATTTTGTAATCCCCGTCTCAAGCTCCTTCAGTAC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000017694.7
ENSMUST00000108239.7
3UTR-3UTR CAA 90 bp AAGGAGCTTGAGACGGGGATTACAAAATTCTGGAAGGAGATTAGGAGTAGCCTAATCCGTCATTACTTCTaGAACCATCAACAAGTTGTC +
Preference number: 3 (lower is better)
Translates to: KELETGITKFWKEIRSSLIRHYF*NHQQVV
Trigger: GACAACTTGTTGATGGTTCAAGAAGTAATGACGGAT...TAGGCTACTCCTAATCTCCTTCCAGAATTTTGTAATCCCCGTCTCAAGCTCCTT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000017694.7
ENSMUST00000108239.7
3UTR-3UTR CAA 90 bp AAGGAGCTTGAGACGGGGATTACAAAATTCTGGAAGGAGATTAGGAGTAGCCTACATAACTGTTTTCCATaGTGTAACTTTAGAGACTGC +
Preference number: 3 (lower is better)
Translates to: KELETGITKFWKEIRSSLHNCFP*CNFRDC
Trigger: GCAGTCTCTAAAGTTACACAATGGAAAACAGTTATG...TAGGCTACTCCTAATCTCCTTCCAGAATTTTGTAATCCCCGTCTCAAGCTCCTT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000017694.7
ENSMUST00000108239.7
3UTR CCA 72 bp TATAAAAGTACCAGAAAATGTACAAACGACTTGAGTTaGCAAGATTCACTGGACTGTGTAACTACAGGGAGT +
Preference number: 3 (lower is better)
Translates to: YKSTRKCTNDLS*QDSLDCVTTGS
Trigger: ACTCCCTGTAGTTACACAGTCCAGTGAATCTTGCCAACTCAAGTCGTTTGTACATTTTCTGGTACTTTTATA
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000017694.7
ENSMUST00000108239.7
CDS-3UTR TCA 90 bp AGACTGCCTATTTACAGTGGCACAGCTCTGCTGCTTGGCAGGAGAGGACAATTAAATTCTCCAGCGCTCTaGGGAGCCCACCTGTCTCTA +
Preference number: 4 (lower is better)
Translates to: RLPIYSGTALLLGRRGQLNSPAL*GAHLSL
Trigger: TAGAGACAGGTGGGCTCCTCAGAGCGCTGGAGAATT...TAATTGTCCTCTCCTGCCAAGCAGCAGAGCTGTGCCACTGTAAATAGGCAGTCT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000017694.7
ENSMUST00000108239.7
CDS-3UTR GCA 90 bp AGACTGCCTATTTACAGTGGCACAGCTCTGCTGCTTGGCAGGAGAGGACAATTAAAGATGCCCCATGCTTaGTGGTGCACTGGCCTGTGT +
Preference number: 4 (lower is better)
Translates to: RLPIYSGTALLLGRRGQLKMPHA*WCTGLC
Trigger: ACACAGGCCAGTGCACCAGCAAGCATGGGGCATCTT...TAATTGTCCTCTCCTGCCAAGCAGCAGAGCTGTGCCACTGTAAATAGGCAGTCT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000017694.7
ENSMUST00000108239.7
CDS-3UTR CCA 90 bp AGACTGCCTATTTACAGTGGCACAGCTCTGCTGCTTGGCAGGAGAGGACAATTAATGCCCCATGCTTGCTaGTGCACTGGCCTGTGTAGT +
Preference number: 4 (lower is better)
Translates to: RLPIYSGTALLLGRRGQLMPHAC*CTGLCS
Trigger: ACTACACAGGCCAGTGCACCAGCAAGCATGGGGCAT...TAATTGTCCTCTCCTGCCAAGCAGCAGAGCTGTGCCACTGTAAATAGGCAGTCT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000017694.7
ENSMUST00000108239.7
CDS-3UTR TCA 90 bp AGACTGCCTATTTACAGTGGCACAGCTCTGCTGCTTGGCAGGAGAGGACAATTACTTCAGAACCACTTTTaGCTGCTTCACCTGGCCCAG +
Preference number: 4 (lower is better)
Translates to: RLPIYSGTALLLGRRGQLLQNHF*LLHLAQ
Trigger: CTGGGCCAGGTGAAGCAGTCAAAAGTGGTTCTGAAG...TAATTGTCCTCTCCTGCCAAGCAGCAGAGCTGTGCCACTGTAAATAGGCAGTCT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000017694.7
ENSMUST00000108239.7
CDS-3UTR TCA 90 bp AGACTGCCTATTTACAGTGGCACAGCTCTGCTGCTTGGCAGGAGAGGACAATTAACATCTGGAACCACATaGACTGGCAGTGGCAGGATG +
Preference number: 4 (lower is better)
Translates to: RLPIYSGTALLLGRRGQLTSGTT*TGSGRM
Trigger: CATCCTGCCACTGCCAGTTCATGTGGTTCCAGATGT...TAATTGTCCTCTCCTGCCAAGCAGCAGAGCTGTGCCACTGTAAATAGGCAGTCT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000017694.7
ENSMUST00000108239.7
CDS-3UTR CCA 90 bp AGACTGCCTATTTACAGTGGCACAGCTCTGCTGCTTGGCAGGAGAGGACAATTATGGAACCACATGAACTaGCAGTGGCAGGATGACCTC +
Preference number: 4 (lower is better)
Translates to: RLPIYSGTALLLGRRGQLWNHMN*QWQDDL
Trigger: GAGGTCATCCTGCCACTGCCAGTTCATGTGGTTCCA...TAATTGTCCTCTCCTGCCAAGCAGCAGAGCTGTGCCACTGTAAATAGGCAGTCT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000017694.7
ENSMUST00000108239.7
CDS-3UTR CCA 90 bp CACAGCTCTGCTGCTTGGCAGGAGAGGACAATTACAGGAAAAGGGAAAAATGACGGCCTGTGTAGTCACTaGGAAGCCATAAGCACCCCT +
Preference number: 4 (lower is better)
Translates to: HSSAAWQERTITGKGKNDGLCSH*EAISTP
Trigger: AGGGGTGCTTATGGCTTCCCAGTGACTACACAGGCC...GTCATTTTTCCCTTTTCCTGTAATTGTCCTCTCCTGCCAAGCAGCAGAGCTGTG
51% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000017694.7
ENSMUST00000108239.7
CDS-3UTR TCA 90 bp AGACTGCCTATTTACAGTGGCACAGCTCTGCTGCTTGGCAGGAGAGGACAATTAAGGAAGCTTCCTTGGTaGTGTAACAACTTTCCCCGG +
Preference number: 4 (lower is better)
Translates to: RLPIYSGTALLLGRRGQLRKLPW*CNNFPR
Trigger: CCGGGGAAAGTTGTTACATCACCAAGGAAGCTTCCT...TAATTGTCCTCTCCTGCCAAGCAGCAGAGCTGTGCCACTGTAAATAGGCAGTCT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000017694.7
ENSMUST00000108239.7
CDS-3UTR TCA 90 bp AGACTGCCTATTTACAGTGGCACAGCTCTGCTGCTTGGCAGGAGAGGACAATTAGTACAGAGTGGGGCTTaGAACCACTGTTCTGTGTCT +
Preference number: 4 (lower is better)
Translates to: RLPIYSGTALLLGRRGQLVQSGA*NHCSVS
Trigger: AGACACAGAACAGTGGTTTCAAGCCCCACTCTGTAC...TAATTGTCCTCTCCTGCCAAGCAGCAGAGCTGTGCCACTGTAAATAGGCAGTCT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000017694.7
ENSMUST00000108239.7
CDS-3UTR CCA 90 bp AGACTGCCTATTTACAGTGGCACAGCTCTGCTGCTTGGCAGGAGAGGACAATTAGGTGGAAGCCTTCACTaGAATAGTGTCCTGAGCATC +
Preference number: 4 (lower is better)
Translates to: RLPIYSGTALLLGRRGQLGGSLH*NSVLSI
Trigger: GATGCTCAGGACACTATTCCAGTGAAGGCTTCCACC...TAATTGTCCTCTCCTGCCAAGCAGCAGAGCTGTGCCACTGTAAATAGGCAGTCT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000017694.7
ENSMUST00000108239.7
CDS-3UTR GCA 90 bp AGACTGCCTATTTACAGTGGCACAGCTCTGCTGCTTGGCAGGAGAGGACAATTAGCTGTCTTTCCTCCATaGTGCACTTTGGTACTGAAG +
Preference number: 4 (lower is better)
Translates to: RLPIYSGTALLLGRRGQLAVFPP*CTLVLK
Trigger: CTTCAGTACCAAAGTGCAGCATGGAGGAAAGACAGC...TAATTGTCCTCTCCTGCCAAGCAGCAGAGCTGTGCCACTGTAAATAGGCAGTCT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000017694.7
ENSMUST00000108239.7
CDS-3UTR TCA 90 bp AAGGAGCTTGAGACGGGGATTACAAAATTCTGGAAGGAGATTAGGAGTAGCCTACTTCAGAACCACTTTTaGCTGCTTCACCTGGCCCAG +
Preference number: 4 (lower is better)
Translates to: KELETGITKFWKEIRSSLLQNHF*LLHLAQ
Trigger: CTGGGCCAGGTGAAGCAGTCAAAAGTGGTTCTGAAG...TAGGCTACTCCTAATCTCCTTCCAGAATTTTGTAATCCCCGTCTCAAGCTCCTT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000017694.7
ENSMUST00000108239.7
CDS-3UTR TCA 90 bp AGACTGCCTATTTACAGTGGCACAGCTCTGCTGCTTGGCAGGAGAGGACAATTATTCGTCAAGGTCTTTTaGTCTCCCCTTCATCTCTTC +
Preference number: 4 (lower is better)
Translates to: RLPIYSGTALLLGRRGQLFVKVF*SPLHLF
Trigger: GAAGAGATGAAGGGGAGATCAAAAGACCTTGACGAA...TAATTGTCCTCTCCTGCCAAGCAGCAGAGCTGTGCCACTGTAAATAGGCAGTCT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000017694.7
ENSMUST00000108239.7
CDS-3UTR GCA 90 bp AGACTGCCTATTTACAGTGGCACAGCTCTGCTGCTTGGCAGGAGAGGACAATTAATCAGCTCTTTTGGTTaGATGAGTCCTGGAGTCGTT +
Preference number: 4 (lower is better)
Translates to: RLPIYSGTALLLGRRGQLISSFG*MSPGVV
Trigger: AACGACTCCAGGACTCATGCAACCAAAAGAGCTGAT...TAATTGTCCTCTCCTGCCAAGCAGCAGAGCTGTGCCACTGTAAATAGGCAGTCT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000017694.7
ENSMUST00000108239.7
CDS-3UTR GCA 90 bp AAGGAGCTTGAGACGGGGATTACAAAATTCTGGAAGGAGATTAGGAGTAGCCTAGTAACTGTCTTGAGGTaGAGCTGTGGCGATGGTTCG +
Preference number: 4 (lower is better)
Translates to: KELETGITKFWKEIRSSLVTVLR*SCGDGS
Trigger: CGAACCATCGCCACAGCTGCACCTCAAGACAGTTAC...TAGGCTACTCCTAATCTCCTTCCAGAATTTTGTAATCCCCGTCTCAAGCTCCTT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000017694.7
ENSMUST00000108239.7
CDS-3UTR GCA 90 bp CACAGCTCTGCTGCTTGGCAGGAGAGGACAATTACAGGAAAAGGGAAAAATGACGCTGTCTTTCCTCCATaGTGCACTTTGGTACTGAAG +
Preference number: 4 (lower is better)
Translates to: HSSAAWQERTITGKGKNDAVFPP*CTLVLK
Trigger: CTTCAGTACCAAAGTGCAGCATGGAGGAAAGACAGC...GTCATTTTTCCCTTTTCCTGTAATTGTCCTCTCCTGCCAAGCAGCAGAGCTGTG
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000017694.7
ENSMUST00000108239.7
CDS-3UTR GCA 90 bp GTTTTCCATTGTGTAACTTTAGAGACTGCCTATTTACAGTGGCACAGCTCTGCTAAGATGCCCCATGCTTaGTGGTGCACTGGCCTGTGT +
Preference number: 4 (lower is better)
Translates to: VFHCVTLETAYLQWHSSAKMPHA*WCTGLC
Trigger: ACACAGGCCAGTGCACCAGCAAGCATGGGGCATCTT...AGCAGAGCTGTGCCACTGTAAATAGGCAGTCTCTAAAGTTACACAATGGAAAAC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000017694.7
ENSMUST00000108239.7
CDS-3UTR CCA 90 bp AGACTGCCTATTTACAGTGGCACAGCTCTGCTGCTTGGCAGGAGAGGACAATTATTTCCTCTTCTGAACTaGCTGCTCATTTTCTGGGTC +
Preference number: 4 (lower is better)
Translates to: RLPIYSGTALLLGRRGQLFPLLN*LLIFWV
Trigger: GACCCAGAAAATGAGCAGCCAGTTCAGAAGAGGAAA...TAATTGTCCTCTCCTGCCAAGCAGCAGAGCTGTGCCACTGTAAATAGGCAGTCT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000017694.7
ENSMUST00000108239.7
CDS-3UTR CCA 90 bp AAGGAGCTTGAGACGGGGATTACAAAATTCTGGAAGGAGATTAGGAGTAGCCTAACCGCCAGCTCTAATTaGCCCTCCTGGATCACAACA +
Preference number: 4 (lower is better)
Translates to: KELETGITKFWKEIRSSLTASSN*PSWITT
Trigger: TGTTGTGATCCAGGAGGGCCAATTAGAGCTGGCGGT...TAGGCTACTCCTAATCTCCTTCCAGAATTTTGTAATCCCCGTCTCAAGCTCCTT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000017694.7
ENSMUST00000108239.7
CDS-3UTR CCA 90 bp AGACTGCCTATTTACAGTGGCACAGCTCTGCTGCTTGGCAGGAGAGGACAATTATCGCCTTCTTCCTGTTaGATTCTTCAGCTCCAACAT +
Preference number: 4 (lower is better)
Translates to: RLPIYSGTALLLGRRGQLSPSSC*ILQLQH
Trigger: ATGTTGGAGCTGAAGAATCCAACAGGAAGAAGGCGA...TAATTGTCCTCTCCTGCCAAGCAGCAGAGCTGTGCCACTGTAAATAGGCAGTCT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000017694.7
ENSMUST00000108239.7
CDS-3UTR CCA 90 bp AAGGAGCTTGAGACGGGGATTACAAAATTCTGGAAGGAGATTAGGAGTAGCCTATGGAACCACATGAACTaGCAGTGGCAGGATGACCTC +
Preference number: 4 (lower is better)
Translates to: KELETGITKFWKEIRSSLWNHMN*QWQDDL
Trigger: GAGGTCATCCTGCCACTGCCAGTTCATGTGGTTCCA...TAGGCTACTCCTAATCTCCTTCCAGAATTTTGTAATCCCCGTCTCAAGCTCCTT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000017694.7
ENSMUST00000108239.7
CDS-3UTR CCA 90 bp AGCTCTTCTTTAAAGTCACCATACTCTAGAGTCATCAGGACCACACAGTCTCTAATGCCCCATGCTTGCTaGTGCACTGGCCTGTGTAGT +
Preference number: 4 (lower is better)
Translates to: SSSLKSPYSRVIRTTQSLMPHAC*CTGLCS
Trigger: ACTACACAGGCCAGTGCACCAGCAAGCATGGGGCAT...TAGAGACTGTGTGGTCCTGATGACTCTAGAGTATGGTGACTTTAAAGAAGAGCT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000017694.7
ENSMUST00000108239.7
CDS-3UTR CCA 90 bp AGACTGCCTATTTACAGTGGCACAGCTCTGCTGCTTGGCAGGAGAGGACAATTAGACTTTCTCAATGGCTaGTCTTTTGACTGCTTCCTG +
Preference number: 4 (lower is better)
Translates to: RLPIYSGTALLLGRRGQLDFLNG*SFDCFL
Trigger: CAGGAAGCAGTCAAAAGACCAGCCATTGAGAAAGTC...TAATTGTCCTCTCCTGCCAAGCAGCAGAGCTGTGCCACTGTAAATAGGCAGTCT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000017694.7
ENSMUST00000108239.7
CDS-3UTR TCA 90 bp AGACTGCCTATTTACAGTGGCACAGCTCTGCTGCTTGGCAGGAGAGGACAATTATGTTTCTTCAGTCTTTaGTCCGCCAATTTGGAATGC +
Preference number: 4 (lower is better)
Translates to: RLPIYSGTALLLGRRGQLCFFSL*SANLEC
Trigger: GCATTCCAAATTGGCGGATCAAAGACTGAAGAAACA...TAATTGTCCTCTCCTGCCAAGCAGCAGAGCTGTGCCACTGTAAATAGGCAGTCT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000017694.7
ENSMUST00000108239.7
CDS-3UTR TCA 90 bp AAGGAGCTTGAGACGGGGATTACAAAATTCTGGAAGGAGATTAGGAGTAGCCTATTAAACCCAAGCTCCTaGGCACAAGCATACACGGCA +
Preference number: 4 (lower is better)
Translates to: KELETGITKFWKEIRSSLLNPSS*AQAYTA
Trigger: TGCCGTGTATGCTTGTGCTCAGGAGCTTGGGTTTAA...TAGGCTACTCCTAATCTCCTTCCAGAATTTTGTAATCCCCGTCTCAAGCTCCTT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000017694.7
ENSMUST00000108239.7
CDS-3UTR TCA 90 bp AAGGAGCTTGAGACGGGGATTACAAAATTCTGGAAGGAGATTAGGAGTAGCCTAGTAGCTTCCTTCAGCTaGGACAGGATTTGCCTACCA +
Preference number: 4 (lower is better)
Translates to: KELETGITKFWKEIRSSLVASFS*DRICLP
Trigger: TGGTAGGCAAATCCTGTCTCAGCTGAAGGAAGCTAC...TAGGCTACTCCTAATCTCCTTCCAGAATTTTGTAATCCCCGTCTCAAGCTCCTT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000017694.7
ENSMUST00000108239.7
CDS-3UTR TCA 90 bp AAGGAGCTTGAGACGGGGATTACAAAATTCTGGAAGGAGATTAGGAGTAGCCTAAGGAAGCTTCCTTGGTaGTGTAACAACTTTCCCCGG +
Preference number: 4 (lower is better)
Translates to: KELETGITKFWKEIRSSLRKLPW*CNNFPR
Trigger: CCGGGGAAAGTTGTTACATCACCAAGGAAGCTTCCT...TAGGCTACTCCTAATCTCCTTCCAGAATTTTGTAATCCCCGTCTCAAGCTCCTT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000017694.7
ENSMUST00000108239.7
CDS-3UTR TCA 90 bp AGACTGCCTATTTACAGTGGCACAGCTCTGCTGCTTGGCAGGAGAGGACAATTACCAAAGACGAATTTTTaGCTCCTTTGTCATCTCCCA +
Preference number: 4 (lower is better)
Translates to: RLPIYSGTALLLGRRGQLPKTNF*LLCHLP
Trigger: TGGGAGATGACAAAGGAGTCAAAAATTCGTCTTTGG...TAATTGTCCTCTCCTGCCAAGCAGCAGAGCTGTGCCACTGTAAATAGGCAGTCT
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000017694.7
ENSMUST00000108239.7
CDS-3UTR TCA 90 bp GTTTTCCATTGTGTAACTTTAGAGACTGCCTATTTACAGTGGCACAGCTCTGCTACATCTGGAACCACATaGACTGGCAGTGGCAGGATG +
Preference number: 4 (lower is better)
Translates to: VFHCVTLETAYLQWHSSATSGTT*TGSGRM
Trigger: CATCCTGCCACTGCCAGTTCATGTGGTTCCAGATGT...AGCAGAGCTGTGCCACTGTAAATAGGCAGTCTCTAAAGTTACACAATGGAAAAC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000017694.7
ENSMUST00000108239.7
CDS-3UTR TCA 90 bp CACAGCTCTGCTGCTTGGCAGGAGAGGACAATTACAGGAAAAGGGAAAAATGACCTGTTTCCTTTTCTGTaGCTTTCTCAATGGCTGGTC +
Preference number: 4 (lower is better)
Translates to: HSSAAWQERTITGKGKNDLFPFL*LSQWLV
Trigger: GACCAGCCATTGAGAAAGTCACAGAAAAGGAAACAG...GTCATTTTTCCCTTTTCCTGTAATTGTCCTCTCCTGCCAAGCAGCAGAGCTGTG
47% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000017694.7
ENSMUST00000108239.7
CDS-3UTR GCA 90 bp CACAGCTCTGCTGCTTGGCAGGAGAGGACAATTACAGGAAAAGGGAAAAATGACGCGTCTTACAGTCTTTaGTGTTGCCAACAAGCAATG +
Preference number: 4 (lower is better)
Translates to: HSSAAWQERTITGKGKNDASYSL*CCQQAM
Trigger: CATTGCTTGTTGGCAACAGCAAAGACTGTAAGACGC...GTCATTTTTCCCTTTTCCTGTAATTGTCCTCTCCTGCCAAGCAGCAGAGCTGTG
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000017694.7
ENSMUST00000108239.7
CDS-3UTR GCA 90 bp CACAGCTCTGCTGCTTGGCAGGAGAGGACAATTACAGGAAAAGGGAAAAATGACAATGCTCTCATGAACTaGTGTCTTTCCTCCATGCTG +
Preference number: 4 (lower is better)
Translates to: HSSAAWQERTITGKGKNDNALMN*CLSSML
Trigger: CAGCATGGAGGAAAGACAGCAGTTCATGAGAGCATT...GTCATTTTTCCCTTTTCCTGTAATTGTCCTCTCCTGCCAAGCAGCAGAGCTGTG
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000017694.7
ENSMUST00000108239.7
CDS-3UTR GCA 90 bp AAGGAGCTTGAGACGGGGATTACAAAATTCTGGAAGGAGATTAGGAGTAGCCTACGGTGGCTGCCTAAATaGTCTCATGAACTGCTGTCT +
Preference number: 4 (lower is better)
Translates to: KELETGITKFWKEIRSSLRWLPK*SHELLS
Trigger: AGACAGCAGTTCATGAGAGCATTTAGGCAGCCACCG...TAGGCTACTCCTAATCTCCTTCCAGAATTTTGTAATCCCCGTCTCAAGCTCCTT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000017694.7
ENSMUST00000108239.7
CDS-3UTR GCA 90 bp AAGGAGCTTGAGACGGGGATTACAAAATTCTGGAAGGAGATTAGGAGTAGCCTAAGAAGTGCTCGCTTCTaGCCACTTGTCTTTGGTGAC +
Preference number: 4 (lower is better)
Translates to: KELETGITKFWKEIRSSLRSARF*PLVFGD
Trigger: GTCACCAAAGACAAGTGGGCAGAAGCGAGCACTTCT...TAGGCTACTCCTAATCTCCTTCCAGAATTTTGTAATCCCCGTCTCAAGCTCCTT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000017694.7
ENSMUST00000108239.7
CDS-3UTR GCA 90 bp CACAGCTCTGCTGCTTGGCAGGAGAGGACAATTACAGGAAAAGGGAAAAATGACAGTGGGAAACGAGCATaGAACACTTCTTCTCTGCTA +
Preference number: 4 (lower is better)
Translates to: HSSAAWQERTITGKGKNDSGKRA*NTSSLL
Trigger: TAGCAGAGAAGAAGTGTTGCATGCTCGTTTCCCACT...GTCATTTTTCCCTTTTCCTGTAATTGTCCTCTCCTGCCAAGCAGCAGAGCTGTG
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000017694.7
ENSMUST00000108239.7
CDS-3UTR CCA 90 bp AGACTGCCTATTTACAGTGGCACAGCTCTGCTGCTTGGCAGGAGAGGACAATTAAAGCAATGGGGGAGATaGCTTTATTTTGTACGCCTT +
Preference number: 4 (lower is better)
Translates to: RLPIYSGTALLLGRRGQLKQWGR*LYFVRL
Trigger: AAGGCGTACAAAATAAAGCCATCTCCCCCATTGCTT...TAATTGTCCTCTCCTGCCAAGCAGCAGAGCTGTGCCACTGTAAATAGGCAGTCT
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000017694.7
ENSMUST00000108239.7
CDS-3UTR CCA 90 bp AGCTCTTCTTTAAAGTCACCATACTCTAGAGTCATCAGGACCACACAGTCTCTATTTGACTGCTTCACCTaGCCCAGAAGGAACACAGGC +
Preference number: 4 (lower is better)
Translates to: SSSLKSPYSRVIRTTQSLFDCFT*PRRNTG
Trigger: GCCTGTGTTCCTTCTGGGCCAGGTGAAGCAGTCAAA...TAGAGACTGTGTGGTCCTGATGACTCTAGAGTATGGTGACTTTAAAGAAGAGCT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000017694.7
ENSMUST00000108239.7
CDS-3UTR CCA 90 bp GTTTTCCATTGTGTAACTTTAGAGACTGCCTATTTACAGTGGCACAGCTCTGCTTTTGACTGCTTCACCTaGCCCAGAAGGAACACAGGC +
Preference number: 4 (lower is better)
Translates to: VFHCVTLETAYLQWHSSAFDCFT*PRRNTG
Trigger: GCCTGTGTTCCTTCTGGGCCAGGTGAAGCAGTCAAA...AGCAGAGCTGTGCCACTGTAAATAGGCAGTCTCTAAAGTTACACAATGGAAAAC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000017694.7
ENSMUST00000108239.7
CDS-3UTR CCA 90 bp AAGGAGCTTGAGACGGGGATTACAAAATTCTGGAAGGAGATTAGGAGTAGCCTAGGTGGAAGCCTTCACTaGAATAGTGTCCTGAGCATC +
Preference number: 4 (lower is better)
Translates to: KELETGITKFWKEIRSSLGGSLH*NSVLSI
Trigger: GATGCTCAGGACACTATTCCAGTGAAGGCTTCCACC...TAGGCTACTCCTAATCTCCTTCCAGAATTTTGTAATCCCCGTCTCAAGCTCCTT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000017694.7
ENSMUST00000108239.7
CDS-3UTR CCA 90 bp AAGGAGCTTGAGACGGGGATTACAAAATTCTGGAAGGAGATTAGGAGTAGCCTACACATGAACTGGCAGTaGCAGGATGACCTCAAGGTT +
Preference number: 4 (lower is better)
Translates to: KELETGITKFWKEIRSSLHMNWQ*QDDLKV
Trigger: AACCTTGAGGTCATCCTGCCACTGCCAGTTCATGTG...TAGGCTACTCCTAATCTCCTTCCAGAATTTTGTAATCCCCGTCTCAAGCTCCTT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000017694.7
ENSMUST00000108239.7
CDS-3UTR CCA 90 bp ACCAAAAACAAAAACCAACAACAAACGCCATACTCAAATGGGAACAGCAGTCAGGGCCTGTGTAGTCACTaGGAAGCCATAAGCACCCCT +
Preference number: 4 (lower is better)
Translates to: TKNKNQQQTPYSNGNSSQGLCSH*EAISTP
Trigger: AGGGGTGCTTATGGCTTCCCAGTGACTACACAGGCC...CTGACTGCTGTTCCCATTTGAGTATGGCGTTTGTTGTTGGTTTTTGTTTTTGGT
47% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 2 transcripts:
ENSMUST00000017694.7
ENSMUST00000108239.7
CDS-3UTR TCA 90 bp AGACTGCCTATTTACAGTGGCACAGCTCTGCTGCTTGGCAGGAGAGGACAATTATTAGATTTCCTCTTCTaGACTGGCTGCTCATTTTCT +
Preference number: 4 (lower is better)
Translates to: RLPIYSGTALLLGRRGQLLDFLF*TGCSFS
Trigger: AGAAAATGAGCAGCCAGTTCAGAAGAGGAAATCTAA...TAATTGTCCTCTCCTGCCAAGCAGCAGAGCTGTGCCACTGTAAATAGGCAGTCT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000017694.7
ENSMUST00000108239.7
CDS-3UTR TCA 90 bp AGACTGCCTATTTACAGTGGCACAGCTCTGCTGCTTGGCAGGAGAGGACAATTAGCTTTTGAGAACTTCTaGTTTCTGTCTTACACTCCT +
Preference number: 4 (lower is better)
Translates to: RLPIYSGTALLLGRRGQLAFENF*FLSYTP
Trigger: AGGAGTGTAAGACAGAAATCAGAAGTTCTCAAAAGC...TAATTGTCCTCTCCTGCCAAGCAGCAGAGCTGTGCCACTGTAAATAGGCAGTCT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000017694.7
ENSMUST00000108239.7
CDS-3UTR TCA 90 bp AGACTGCCTATTTACAGTGGCACAGCTCTGCTGCTTGGCAGGAGAGGACAATTATTTTCTTCTGAGAAGTaGGCTCTTCCTCAGTTGTTT +
Preference number: 4 (lower is better)
Translates to: RLPIYSGTALLLGRRGQLFSSEK*ALPQLF
Trigger: AAACAACTGAGGAAGAGCTCACTTCTCAGAAGAAAA...TAATTGTCCTCTCCTGCCAAGCAGCAGAGCTGTGCCACTGTAAATAGGCAGTCT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000017694.7
ENSMUST00000108239.7
CDS-3UTR TCA 90 bp AGACTGCCTATTTACAGTGGCACAGCTCTGCTGCTTGGCAGGAGAGGACAATTATTGTACAAGAAGAGCTaGTTCTTTCGTCAAGGTCTT +
Preference number: 4 (lower is better)
Translates to: RLPIYSGTALLLGRRGQLLYKKS*FFRQGL
Trigger: AAGACCTTGACGAAAGAATCAGCTCTTCTTGTACAA...TAATTGTCCTCTCCTGCCAAGCAGCAGAGCTGTGCCACTGTAAATAGGCAGTCT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000017694.7
ENSMUST00000108239.7
CDS-3UTR TCA 90 bp GTTTTCCATTGTGTAACTTTAGAGACTGCCTATTTACAGTGGCACAGCTCTGCTTTAAACCCAAGCTCCTaGGCACAAGCATACACGGCA +
Preference number: 4 (lower is better)
Translates to: VFHCVTLETAYLQWHSSALNPSS*AQAYTA
Trigger: TGCCGTGTATGCTTGTGCTCAGGAGCTTGGGTTTAA...AGCAGAGCTGTGCCACTGTAAATAGGCAGTCTCTAAAGTTACACAATGGAAAAC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000017694.7
ENSMUST00000108239.7
CDS-3UTR TCA 90 bp AAGGAGCTTGAGACGGGGATTACAAAATTCTGGAAGGAGATTAGGAGTAGCCTACCTACCACTTCGCTGTaGAGAGGCATTCACTTCAAA +
Preference number: 4 (lower is better)
Translates to: KELETGITKFWKEIRSSLPTTSL*RGIHFK
Trigger: TTTGAAGTGAATGCCTCTTCACAGCGAAGTGGTAGG...TAGGCTACTCCTAATCTCCTTCCAGAATTTTGTAATCCCCGTCTCAAGCTCCTT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000017694.7
ENSMUST00000108239.7
CDS-3UTR TCA 90 bp AGACTGCCTATTTACAGTGGCACAGCTCTGCTGCTTGGCAGGAGAGGACAATTAGAAACAGGGTTTTTGTaGGTTTACACCTTGCTTATC +
Preference number: 4 (lower is better)
Translates to: RLPIYSGTALLLGRRGQLETGFL*VYTLLI
Trigger: GATAAGCAAGGTGTAAACTCACAAAAACCCTGTTTC...TAATTGTCCTCTCCTGCCAAGCAGCAGAGCTGTGCCACTGTAAATAGGCAGTCT
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000017694.7
ENSMUST00000108239.7
CDS-3UTR TCA 90 bp AGCTCTTCTTTAAAGTCACCATACTCTAGAGTCATCAGGACCACACAGTCTCTACTTTGTCATCTCCCATaGGTGCTCCTACGTCGTCAT +
Preference number: 4 (lower is better)
Translates to: SSSLKSPYSRVIRTTQSLLCHLP*VLLRRH
Trigger: ATGACGACGTAGGAGCACTCATGGGAGATGACAAAG...TAGAGACTGTGTGGTCCTGATGACTCTAGAGTATGGTGACTTTAAAGAAGAGCT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000017694.7
ENSMUST00000108239.7
CDS-3UTR TCA 90 bp GTTTTCCATTGTGTAACTTTAGAGACTGCCTATTTACAGTGGCACAGCTCTGCTCCTCCTCAAAGAGAATaGGTGATGTCGCCTTCTTCC +
Preference number: 4 (lower is better)
Translates to: VFHCVTLETAYLQWHSSAPPQRE*VMSPSS
Trigger: GGAAGAAGGCGACATCACTCATTCTCTTTGAGGAGG...AGCAGAGCTGTGCCACTGTAAATAGGCAGTCTCTAAAGTTACACAATGGAAAAC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000017694.7
ENSMUST00000108239.7
CDS-3UTR TCA 90 bp AGCTCTTCTTTAAAGTCACCATACTCTAGAGTCATCAGGACCACACAGTCTCTACTGGCAGTGGCAGGATaGCCTCAAGGTTACTATGTA +
Preference number: 4 (lower is better)
Translates to: SSSLKSPYSRVIRTTQSLLAVAG*PQGYYV
Trigger: TACATAGTAACCTTGAGGTCATCCTGCCACTGCCAG...TAGAGACTGTGTGGTCCTGATGACTCTAGAGTATGGTGACTTTAAAGAAGAGCT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000017694.7
ENSMUST00000108239.7
CDS-3UTR TCA 90 bp GTTTTCCATTGTGTAACTTTAGAGACTGCCTATTTACAGTGGCACAGCTCTGCTGTACAGAGTGGGGCTTaGAACCACTGTTCTGTGTCT +
Preference number: 4 (lower is better)
Translates to: VFHCVTLETAYLQWHSSAVQSGA*NHCSVS
Trigger: AGACACAGAACAGTGGTTTCAAGCCCCACTCTGTAC...AGCAGAGCTGTGCCACTGTAAATAGGCAGTCTCTAAAGTTACACAATGGAAAAC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000017694.7
ENSMUST00000108239.7
CDS-3UTR TCA 90 bp ATAACTGTTTTCCATTGTGTAACTTTAGAGACTGCCTATTTACAGTGGCACAGCAATTCTCCAGCGCTCTaGGGAGCCCACCTGTCTCTA +
Preference number: 4 (lower is better)
Translates to: ITVFHCVTLETAYLQWHSNSPAL*GAHLSL
Trigger: TAGAGACAGGTGGGCTCCTCAGAGCGCTGGAGAATT...GCTGTGCCACTGTAAATAGGCAGTCTCTAAAGTTACACAATGGAAAACAGTTAT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000017694.7
ENSMUST00000108239.7
CDS-3UTR GCA 90 bp CACAGCTCTGCTGCTTGGCAGGAGAGGACAATTACAGGAAAAGGGAAAAATGACCTTTTCTCCGCTTTTTaGATGGCTCAATCTCGTAGT +
Preference number: 4 (lower is better)
Translates to: HSSAAWQERTITGKGKNDLFSAF*MAQSRS
Trigger: ACTACGAGATTGAGCCATGCAAAAAGCGGAGAAAAG...GTCATTTTTCCCTTTTCCTGTAATTGTCCTCTCCTGCCAAGCAGCAGAGCTGTG
46% GC, longest homopolymer 5 nt, total homopolymer stretches 18 nt.
Matches the following 2 transcripts:
ENSMUST00000017694.7
ENSMUST00000108239.7
CDS-3UTR GCA 90 bp ACCAAAAACAAAAACCAACAACAAACGCCATACTCAAATGGGAACAGCAGTCAGGTAACTGTCTTGAGGTaGAGCTGTGGCGATGGTTCG +
Preference number: 4 (lower is better)
Translates to: TKNKNQQQTPYSNGNSSQVTVLR*SCGDGS
Trigger: CGAACCATCGCCACAGCTGCACCTCAAGACAGTTAC...CTGACTGCTGTTCCCATTTGAGTATGGCGTTTGTTGTTGGTTTTTGTTTTTGGT
46% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000017694.7
ENSMUST00000108239.7
CDS-3UTR GCA 90 bp AGACTGCCTATTTACAGTGGCACAGCTCTGCTGCTTGGCAGGAGAGGACAATTATTCTCTGTTTCCACCTaGAGTAGTCCTAGTTTTCTT +
Preference number: 4 (lower is better)
Translates to: RLPIYSGTALLLGRRGQLFSVST*SSPSFL
Trigger: AAGAAAACTAGGACTACTGCAGGTGGAAACAGAGAA...TAATTGTCCTCTCCTGCCAAGCAGCAGAGCTGTGCCACTGTAAATAGGCAGTCT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000017694.7
ENSMUST00000108239.7
CDS-3UTR GCA 90 bp AGACTGCCTATTTACAGTGGCACAGCTCTGCTGCTTGGCAGGAGAGGACAATTACATGAAGGTTTTGACTaGATTCAAAAACCCAGCATC +
Preference number: 4 (lower is better)
Translates to: RLPIYSGTALLLGRRGQLHEGFD*IQKPSI
Trigger: GATGCTGGGTTTTTGAATGCAGTCAAAACCTTCATG...TAATTGTCCTCTCCTGCCAAGCAGCAGAGCTGTGCCACTGTAAATAGGCAGTCT
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000017694.7
ENSMUST00000108239.7
CDS-3UTR CCA 90 bp ACCAAAAACAAAAACCAACAACAAACGCCATACTCAAATGGGAACAGCAGTCAGACCGCCAGCTCTAATTaGCCCTCCTGGATCACAACA +
Preference number: 4 (lower is better)
Translates to: TKNKNQQQTPYSNGNSSQTASSN*PSWITT
Trigger: TGTTGTGATCCAGGAGGGCCAATTAGAGCTGGCGGT...CTGACTGCTGTTCCCATTTGAGTATGGCGTTTGTTGTTGGTTTTTGTTTTTGGT
46% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000017694.7
ENSMUST00000108239.7
CDS-3UTR CCA 90 bp AGCTCTTCTTTAAAGTCACCATACTCTAGAGTCATCAGGACCACACAGTCTCTACACATGAACTGGCAGTaGCAGGATGACCTCAAGGTT +
Preference number: 4 (lower is better)
Translates to: SSSLKSPYSRVIRTTQSLHMNWQ*QDDLKV
Trigger: AACCTTGAGGTCATCCTGCCACTGCCAGTTCATGTG...TAGAGACTGTGTGGTCCTGATGACTCTAGAGTATGGTGACTTTAAAGAAGAGCT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000017694.7
ENSMUST00000108239.7
CDS-3UTR TCA 90 bp CACAGCTCTGCTGCTTGGCAGGAGAGGACAATTACAGGAAAAGGGAAAAATGACCTTCTCGGTTGTGAGTaGGGTCTTTCTAAAATAATG +
Preference number: 4 (lower is better)
Translates to: HSSAAWQERTITGKGKNDLLGCE*GLSKIM
Trigger: CATTATTTTAGAAAGACCTCACTCACAACCGAGAAG...GTCATTTTTCCCTTTTCCTGTAATTGTCCTCTCCTGCCAAGCAGCAGAGCTGTG
44% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000017694.7
ENSMUST00000108239.7
CDS-3UTR TCA 90 bp ACCAAAAACAAAAACCAACAACAAACGCCATACTCAAATGGGAACAGCAGTCAGTTAGGGGGAGTGGGGTaGACTTGTGCAAGAACAGTA +
Preference number: 4 (lower is better)
Translates to: TKNKNQQQTPYSNGNSSQLGGVG*TCARTV
Trigger: TACTGTTCTTGCACAAGTTCACCCCACTCCCCCTAA...CTGACTGCTGTTCCCATTTGAGTATGGCGTTTGTTGTTGGTTTTTGTTTTTGGT
44% GC, longest homopolymer 5 nt, total homopolymer stretches 19 nt.
Matches the following 2 transcripts:
ENSMUST00000017694.7
ENSMUST00000108239.7
CDS-3UTR TCA 90 bp GTTTTCCATTGTGTAACTTTAGAGACTGCCTATTTACAGTGGCACAGCTCTGCTACTGGAATAGTGTCCTaGGCATCCTCAGACTCAGTA +
Preference number: 4 (lower is better)
Translates to: VFHCVTLETAYLQWHSSATGIVS*ASSDSV
Trigger: TACTGAGTCTGAGGATGCTCAGGACACTATTCCAGT...AGCAGAGCTGTGCCACTGTAAATAGGCAGTCTCTAAAGTTACACAATGGAAAAC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000017694.7
ENSMUST00000108239.7
CDS-3UTR TCA 90 bp CACAGCTCTGCTGCTTGGCAGGAGAGGACAATTACAGGAAAAGGGAAAAATGACTTTTCTTCTGAGAAGTaGGCTCTTCCTCAGTTGTTT +
Preference number: 4 (lower is better)
Translates to: HSSAAWQERTITGKGKNDFSSEK*ALPQLF
Trigger: AAACAACTGAGGAAGAGCTCACTTCTCAGAAGAAAA...GTCATTTTTCCCTTTTCCTGTAATTGTCCTCTCCTGCCAAGCAGCAGAGCTGTG
44% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000017694.7
ENSMUST00000108239.7
CDS-3UTR TCA 90 bp ACCAAAAACAAAAACCAACAACAAACGCCATACTCAAATGGGAACAGCAGTCAGGTAGCTTCCTTCAGCTaGGACAGGATTTGCCTACCA +
Preference number: 4 (lower is better)
Translates to: TKNKNQQQTPYSNGNSSQVASFS*DRICLP
Trigger: TGGTAGGCAAATCCTGTCTCAGCTGAAGGAAGCTAC...CTGACTGCTGTTCCCATTTGAGTATGGCGTTTGTTGTTGGTTTTTGTTTTTGGT
44% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000017694.7
ENSMUST00000108239.7
CDS-3UTR GCA 90 bp AGACTGCCTATTTACAGTGGCACAGCTCTGCTGCTTGGCAGGAGAGGACAATTACTCTTCCACTTTAGCTaGCTTGTGACTTTTTACAAA +
Preference number: 4 (lower is better)
Translates to: RLPIYSGTALLLGRRGQLLFHFS*LVTFYK
Trigger: TTTGTAAAAAGTCACAAGGCAGCTAAAGTGGAAGAG...TAATTGTCCTCTCCTGCCAAGCAGCAGAGCTGTGCCACTGTAAATAGGCAGTCT
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000017694.7
ENSMUST00000108239.7
CDS-3UTR GCA 90 bp AAGGAGCTTGAGACGGGGATTACAAAATTCTGGAAGGAGATTAGGAGTAGCCTATCACTTGGGTCTTTCTaGTTCTCCAGAGGTTTCTTG +
Preference number: 4 (lower is better)
Translates to: KELETGITKFWKEIRSSLSLGSF*FSRGFL
Trigger: CAAGAAACCTCTGGAGAAGCAGAAAGACCCAAGTGA...TAGGCTACTCCTAATCTCCTTCCAGAATTTTGTAATCCCCGTCTCAAGCTCCTT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000017694.7
ENSMUST00000108239.7
CDS-3UTR GCA 90 bp CACAGCTCTGCTGCTTGGCAGGAGAGGACAATTACAGGAAAAGGGAAAAATGACCATGAAGGTTTTGACTaGATTCAAAAACCCAGCATC +
Preference number: 4 (lower is better)
Translates to: HSSAAWQERTITGKGKNDHEGFD*IQKPSI
Trigger: GATGCTGGGTTTTTGAATGCAGTCAAAACCTTCATG...GTCATTTTTCCCTTTTCCTGTAATTGTCCTCTCCTGCCAAGCAGCAGAGCTGTG
44% GC, longest homopolymer 5 nt, total homopolymer stretches 18 nt.
Matches the following 2 transcripts:
ENSMUST00000017694.7
ENSMUST00000108239.7
CDS-3UTR GCA 90 bp AGACTGCCTATTTACAGTGGCACAGCTCTGCTGCTTGGCAGGAGAGGACAATTAGATGTCACAAGCATTTaGAGTCAACAAGGTTACAAA +
Preference number: 4 (lower is better)
Translates to: RLPIYSGTALLLGRRGQLDVTSI*SQQGYK
Trigger: TTTGTAACCTTGTTGACTGCAAATGCTTGTGACATC...TAATTGTCCTCTCCTGCCAAGCAGCAGAGCTGTGCCACTGTAAATAGGCAGTCT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000017694.7
ENSMUST00000108239.7
CDS-3UTR GCA 90 bp AGACTGCCTATTTACAGTGGCACAGCTCTGCTGCTTGGCAGGAGAGGACAATTACTCTTTCTAATTGCTTaGATGAATTCAAGGACTCCA +
Preference number: 4 (lower is better)
Translates to: RLPIYSGTALLLGRRGQLLFLIA*MNSRTP
Trigger: TGGAGTCCTTGAATTCATGCAAGCAATTAGAAAGAG...TAATTGTCCTCTCCTGCCAAGCAGCAGAGCTGTGCCACTGTAAATAGGCAGTCT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000017694.7
ENSMUST00000108239.7
CDS-3UTR GCA 90 bp CACAGCTCTGCTGCTTGGCAGGAGAGGACAATTACAGGAAAAGGGAAAAATGACGGGTCTCTTTCTAATTaGTTGCATGAATTCAAGGAC +
Preference number: 4 (lower is better)
Translates to: HSSAAWQERTITGKGKNDGSLSN*LHEFKD
Trigger: GTCCTTGAATTCATGCAAGCAATTAGAAAGAGACCC...GTCATTTTTCCCTTTTCCTGTAATTGTCCTCTCCTGCCAAGCAGCAGAGCTGTG
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000017694.7
ENSMUST00000108239.7
CDS-3UTR CCA 90 bp AAGGAGCTTGAGACGGGGATTACAAAATTCTGGAAGGAGATTAGGAGTAGCCTATTTCCTCTTCTGAACTaGCTGCTCATTTTCTGGGTC +
Preference number: 4 (lower is better)
Translates to: KELETGITKFWKEIRSSLFPLLN*LLIFWV
Trigger: GACCCAGAAAATGAGCAGCCAGTTCAGAAGAGGAAA...TAGGCTACTCCTAATCTCCTTCCAGAATTTTGTAATCCCCGTCTCAAGCTCCTT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000017694.7
ENSMUST00000108239.7
CDS-3UTR CCA 90 bp AGACTGCCTATTTACAGTGGCACAGCTCTGCTGCTTGGCAGGAGAGGACAATTACTTCTGACTTTTCTCTaGTTCTCTTATAGAAGTTGG +
Preference number: 4 (lower is better)
Translates to: RLPIYSGTALLLGRRGQLLLTFL*FSYRSW
Trigger: CCAACTTCTATAAGAGAACCAGAGAAAAGTCAGAAG...TAATTGTCCTCTCCTGCCAAGCAGCAGAGCTGTGCCACTGTAAATAGGCAGTCT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000017694.7
ENSMUST00000108239.7
CDS-3UTR CCA 90 bp CACAGCTCTGCTGCTTGGCAGGAGAGGACAATTACAGGAAAAGGGAAAAATGACAGAGAATTTAAACAGTaGGAAACGAGCATGCAACAC +
Preference number: 4 (lower is better)
Translates to: HSSAAWQERTITGKGKNDREFKQ*ETSMQH
Trigger: GTGTTGCATGCTCGTTTCCCACTGTTTAAATTCTCT...GTCATTTTTCCCTTTTCCTGTAATTGTCCTCTCCTGCCAAGCAGCAGAGCTGTG
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000017694.7
ENSMUST00000108239.7
CDS-3UTR TCA 90 bp CACAGCTCTGCTGCTTGGCAGGAGAGGACAATTACAGGAAAAGGGAAAAATGACCTTCGTAGGCTATTTTaGTCCTGTTCATCTTTTAAG +
Preference number: 4 (lower is better)
Translates to: HSSAAWQERTITGKGKNDLRRLF*SCSSFK
Trigger: CTTAAAAGATGAACAGGATCAAAATAGCCTACGAAG...GTCATTTTTCCCTTTTCCTGTAATTGTCCTCTCCTGCCAAGCAGCAGAGCTGTG
43% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 2 transcripts:
ENSMUST00000017694.7
ENSMUST00000108239.7
CDS-3UTR TCA 90 bp CACAGCTCTGCTGCTTGGCAGGAGAGGACAATTACAGGAAAAGGGAAAAATGACGTAATGCATTGCTTTTaGGAACTTCTGATTTCTGTC +
Preference number: 4 (lower is better)
Translates to: HSSAAWQERTITGKGKNDVMHCF*ELLISV
Trigger: GACAGAAATCAGAAGTTCTCAAAAGCAATGCATTAC...GTCATTTTTCCCTTTTCCTGTAATTGTCCTCTCCTGCCAAGCAGCAGAGCTGTG
43% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000017694.7
ENSMUST00000108239.7
CDS-3UTR TCA 90 bp ACCAAAAACAAAAACCAACAACAAACGCCATACTCAAATGGGAACAGCAGTCAGACTGGAATAGTGTCCTaGGCATCCTCAGACTCAGTA +
Preference number: 4 (lower is better)
Translates to: TKNKNQQQTPYSNGNSSQTGIVS*ASSDSV
Trigger: TACTGAGTCTGAGGATGCTCAGGACACTATTCCAGT...CTGACTGCTGTTCCCATTTGAGTATGGCGTTTGTTGTTGGTTTTTGTTTTTGGT
43% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000017694.7
ENSMUST00000108239.7
CDS-3UTR TCA 90 bp AAGGAGCTTGAGACGGGGATTACAAAATTCTGGAAGGAGATTAGGAGTAGCCTAGCTTTCTTTGCAATCTaGCGTTTCAGTAAATCTGGC +
Preference number: 4 (lower is better)
Translates to: KELETGITKFWKEIRSSLAFFAI*RFSKSG
Trigger: GCCAGATTTACTGAAACGTCAGATTGCAAAGAAAGC...TAGGCTACTCCTAATCTCCTTCCAGAATTTTGTAATCCCCGTCTCAAGCTCCTT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000017694.7
ENSMUST00000108239.7
CDS-3UTR TCA 90 bp CACAGCTCTGCTGCTTGGCAGGAGAGGACAATTACAGGAAAAGGGAAAAATGACAGAAAATTCTGGATTTaGGCACTTTATTTCCTCCAG +
Preference number: 4 (lower is better)
Translates to: HSSAAWQERTITGKGKNDRKFWI*ALYFLQ
Trigger: CTGGAGGAAATAAAGTGCTCAAATCCAGAATTTTCT...GTCATTTTTCCCTTTTCCTGTAATTGTCCTCTCCTGCCAAGCAGCAGAGCTGTG
43% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000017694.7
ENSMUST00000108239.7
CDS-3UTR TCA 90 bp ATAACTGTTTTCCATTGTGTAACTTTAGAGACTGCCTATTTACAGTGGCACAGCCCTCCTCAAAGAGAATaGGTGATGTCGCCTTCTTCC +
Preference number: 4 (lower is better)
Translates to: ITVFHCVTLETAYLQWHSPPQRE*VMSPSS
Trigger: GGAAGAAGGCGACATCACTCATTCTCTTTGAGGAGG...GCTGTGCCACTGTAAATAGGCAGTCTCTAAAGTTACACAATGGAAAACAGTTAT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000017694.7
ENSMUST00000108239.7
CDS-3UTR TCA 90 bp GTTTTCCATTGTGTAACTTTAGAGACTGCCTATTTACAGTGGCACAGCTCTGCTCTGTTTCCTTTTCTGTaGCTTTCTCAATGGCTGGTC +
Preference number: 4 (lower is better)
Translates to: VFHCVTLETAYLQWHSSALFPFL*LSQWLV
Trigger: GACCAGCCATTGAGAAAGTCACAGAAAAGGAAACAG...AGCAGAGCTGTGCCACTGTAAATAGGCAGTCTCTAAAGTTACACAATGGAAAAC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000017694.7
ENSMUST00000108239.7
CDS-3UTR TCA 90 bp GTTTTCCATTGTGTAACTTTAGAGACTGCCTATTTACAGTGGCACAGCTCTGCTCTTCCATTTGTCCAGTaGAAGGCACTTCTACCCAAT +
Preference number: 4 (lower is better)
Translates to: VFHCVTLETAYLQWHSSALPFVQ*KALLPN
Trigger: ATTGGGTAGAAGTGCCTTTCACTGGACAAATGGAAG...AGCAGAGCTGTGCCACTGTAAATAGGCAGTCTCTAAAGTTACACAATGGAAAAC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000017694.7
ENSMUST00000108239.7
CDS-3UTR GCA 90 bp AGCTCTTCTTTAAAGTCACCATACTCTAGAGTCATCAGGACCACACAGTCTCTAGCGTCTTACAGTCTTTaGTGTTGCCAACAAGCAATG +
Preference number: 4 (lower is better)
Translates to: SSSLKSPYSRVIRTTQSLASYSL*CCQQAM
Trigger: CATTGCTTGTTGGCAACAGCAAAGACTGTAAGACGC...TAGAGACTGTGTGGTCCTGATGACTCTAGAGTATGGTGACTTTAAAGAAGAGCT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000017694.7
ENSMUST00000108239.7
CDS-3UTR GCA 90 bp ACCAAAAACAAAAACCAACAACAAACGCCATACTCAAATGGGAACAGCAGTCAGGTCTTTCCTCCATGCTaGACTTTGGTACTGAAGCCT +
Preference number: 4 (lower is better)
Translates to: TKNKNQQQTPYSNGNSSQVFPPC*TLVLKP
Trigger: AGGCTTCAGTACCAAAGTGCAGCATGGAGGAAAGAC...CTGACTGCTGTTCCCATTTGAGTATGGCGTTTGTTGTTGGTTTTTGTTTTTGGT
43% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000017694.7
ENSMUST00000108239.7
CDS-3UTR GCA 90 bp AGCTCTTCTTTAAAGTCACCATACTCTAGAGTCATCAGGACCACACAGTCTCTAAATGCTCTCATGAACTaGTGTCTTTCCTCCATGCTG +
Preference number: 4 (lower is better)
Translates to: SSSLKSPYSRVIRTTQSLNALMN*CLSSML
Trigger: CAGCATGGAGGAAAGACAGCAGTTCATGAGAGCATT...TAGAGACTGTGTGGTCCTGATGACTCTAGAGTATGGTGACTTTAAAGAAGAGCT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000017694.7
ENSMUST00000108239.7
CDS-3UTR GCA 90 bp ATAACTGTTTTCCATTGTGTAACTTTAGAGACTGCCTATTTACAGTGGCACAGCCGGTGGCTGCCTAAATaGTCTCATGAACTGCTGTCT +
Preference number: 4 (lower is better)
Translates to: ITVFHCVTLETAYLQWHSRWLPK*SHELLS
Trigger: AGACAGCAGTTCATGAGAGCATTTAGGCAGCCACCG...GCTGTGCCACTGTAAATAGGCAGTCTCTAAAGTTACACAATGGAAAACAGTTAT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000017694.7
ENSMUST00000108239.7
CDS-3UTR GCA 90 bp AAGGAGCTTGAGACGGGGATTACAAAATTCTGGAAGGAGATTAGGAGTAGCCTAGCTGTATACAGGTTGTaGTTTTCTGATGTTCTGGCT +
Preference number: 4 (lower is better)
Translates to: KELETGITKFWKEIRSSLAVYRL*FSDVLA
Trigger: AGCCAGAACATCAGAAAAGCACAACCTGTATACAGC...TAGGCTACTCCTAATCTCCTTCCAGAATTTTGTAATCCCCGTCTCAAGCTCCTT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000017694.7
ENSMUST00000108239.7
CDS-3UTR GCA 90 bp AGACTGCCTATTTACAGTGGCACAGCTCTGCTGCTTGGCAGGAGAGGACAATTACTGATGAATCTTGACTaGTTTCATCCAAATCAAAGA +
Preference number: 4 (lower is better)
Translates to: RLPIYSGTALLLGRRGQLLMNLD*FHPNQR
Trigger: TCTTTGATTTGGATGAAAGCAGTCAAGATTCATCAG...TAATTGTCCTCTCCTGCCAAGCAGCAGAGCTGTGCCACTGTAAATAGGCAGTCT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000017694.7
ENSMUST00000108239.7
CDS-3UTR GCA 90 bp ATAACTGTTTTCCATTGTGTAACTTTAGAGACTGCCTATTTACAGTGGCACAGCAGAAGTGCTCGCTTCTaGCCACTTGTCTTTGGTGAC +
Preference number: 4 (lower is better)
Translates to: ITVFHCVTLETAYLQWHSRSARF*PLVFGD
Trigger: GTCACCAAAGACAAGTGGGCAGAAGCGAGCACTTCT...GCTGTGCCACTGTAAATAGGCAGTCTCTAAAGTTACACAATGGAAAACAGTTAT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000017694.7
ENSMUST00000108239.7
CDS-3UTR GCA 90 bp AAGGAGCTTGAGACGGGGATTACAAAATTCTGGAAGGAGATTAGGAGTAGCCTATGGTCGTTTAGTTGTTaGCATGAAGGTTTTGACTGC +
Preference number: 4 (lower is better)
Translates to: KELETGITKFWKEIRSSLWSFSC*HEGFDC
Trigger: GCAGTCAAAACCTTCATGGCAACAACTAAACGACCA...TAGGCTACTCCTAATCTCCTTCCAGAATTTTGTAATCCCCGTCTCAAGCTCCTT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000017694.7
ENSMUST00000108239.7
CDS-3UTR GCA 90 bp CACAGCTCTGCTGCTTGGCAGGAGAGGACAATTACAGGAAAAGGGAAAAATGACGATGTCACAAGCATTTaGAGTCAACAAGGTTACAAA +
Preference number: 4 (lower is better)
Translates to: HSSAAWQERTITGKGKNDDVTSI*SQQGYK
Trigger: TTTGTAACCTTGTTGACTGCAAATGCTTGTGACATC...GTCATTTTTCCCTTTTCCTGTAATTGTCCTCTCCTGCCAAGCAGCAGAGCTGTG
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000017694.7
ENSMUST00000108239.7
CDS-3UTR CCA 90 bp AAGGAGCTTGAGACGGGGATTACAAAATTCTGGAAGGAGATTAGGAGTAGCCTAGTTGCCAACAAGCAATaGGGGAGATGGCTTTATTTT +
Preference number: 4 (lower is better)
Translates to: KELETGITKFWKEIRSSLVANKQ*GRWLYF
Trigger: AAAATAAAGCCATCTCCCCCATTGCTTGTTGGCAAC...TAGGCTACTCCTAATCTCCTTCCAGAATTTTGTAATCCCCGTCTCAAGCTCCTT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000017694.7
ENSMUST00000108239.7
CDS-3UTR CCA 90 bp CACAGCTCTGCTGCTTGGCAGGAGAGGACAATTACAGGAAAAGGGAAAAATGACGACTTAGTATTTGGCTaGTTTCTGCTGTCTTCAATA +
Preference number: 4 (lower is better)
Translates to: HSSAAWQERTITGKGKNDDLVFG*FLLSSI
Trigger: TATTGAAGACAGCAGAAACCAGCCAAATACTAAGTC...GTCATTTTTCCCTTTTCCTGTAATTGTCCTCTCCTGCCAAGCAGCAGAGCTGTG
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000017694.7
ENSMUST00000108239.7
CDS-3UTR CCA 90 bp AAGGAGCTTGAGACGGGGATTACAAAATTCTGGAAGGAGATTAGGAGTAGCCTATTTTCCCACTCCCGTTaGTCCTGTTATAAGAACAGT +
Preference number: 4 (lower is better)
Translates to: KELETGITKFWKEIRSSLFSHSR*SCYKNS
Trigger: ACTGTTCTTATAACAGGACCAACGGGAGTGGGAAAA...TAGGCTACTCCTAATCTCCTTCCAGAATTTTGTAATCCCCGTCTCAAGCTCCTT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000017694.7
ENSMUST00000108239.7
CDS-3UTR CCA 90 bp AGCTCTTCTTTAAAGTCACCATACTCTAGAGTCATCAGGACCACACAGTCTCTATCGCCTTCTTCCTGTTaGATTCTTCAGCTCCAACAT +
Preference number: 4 (lower is better)
Translates to: SSSLKSPYSRVIRTTQSLSPSSC*ILQLQH
Trigger: ATGTTGGAGCTGAAGAATCCAACAGGAAGAAGGCGA...TAGAGACTGTGTGGTCCTGATGACTCTAGAGTATGGTGACTTTAAAGAAGAGCT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000017694.7
ENSMUST00000108239.7
CDS-3UTR CCA 90 bp CACAGCTCTGCTGCTTGGCAGGAGAGGACAATTACAGGAAAAGGGAAAAATGACAATGTTCCGAAGAGTTaGCAGGTAGTCAATTATACT +
Preference number: 4 (lower is better)
Translates to: HSSAAWQERTITGKGKNDNVPKS*QVVNYT
Trigger: AGTATAATTGACTACCTGCCAACTCTTCGGAACATT...GTCATTTTTCCCTTTTCCTGTAATTGTCCTCTCCTGCCAAGCAGCAGAGCTGTG
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000017694.7
ENSMUST00000108239.7
CDS-3UTR TCA 90 bp AAGGAGCTTGAGACGGGGATTACAAAATTCTGGAAGGAGATTAGGAGTAGCCTATTAGATTTCCTCTTCTaGACTGGCTGCTCATTTTCT +
Preference number: 4 (lower is better)
Translates to: KELETGITKFWKEIRSSLLDFLF*TGCSFS
Trigger: AGAAAATGAGCAGCCAGTTCAGAAGAGGAAATCTAA...TAGGCTACTCCTAATCTCCTTCCAGAATTTTGTAATCCCCGTCTCAAGCTCCTT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000017694.7
ENSMUST00000108239.7
CDS-3UTR TCA 90 bp AAGGAGCTTGAGACGGGGATTACAAAATTCTGGAAGGAGATTAGGAGTAGCCTATGTGCTGCTGCTTCTTaGCTTATTTCTATTACACAG +
Preference number: 4 (lower is better)
Translates to: KELETGITKFWKEIRSSLCAAAS*LISITQ
Trigger: CTGTGTAATAGAAATAAGTCAAGAAGCAGCAGCACA...TAGGCTACTCCTAATCTCCTTCCAGAATTTTGTAATCCCCGTCTCAAGCTCCTT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000017694.7
ENSMUST00000108239.7
CDS-3UTR TCA 90 bp GTTTTCCATTGTGTAACTTTAGAGACTGCCTATTTACAGTGGCACAGCTCTGCTTGTTTCTTCAGTCTTTaGTCCGCCAATTTGGAATGC +
Preference number: 4 (lower is better)
Translates to: VFHCVTLETAYLQWHSSACFFSL*SANLEC
Trigger: GCATTCCAAATTGGCGGATCAAAGACTGAAGAAACA...AGCAGAGCTGTGCCACTGTAAATAGGCAGTCTCTAAAGTTACACAATGGAAAAC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000017694.7
ENSMUST00000108239.7
CDS-3UTR TCA 90 bp GTTTTCCATTGTGTAACTTTAGAGACTGCCTATTTACAGTGGCACAGCTCTGCTTCCTTCTGTTGTACATaGACAACCCTCTGGAAACTT +
Preference number: 4 (lower is better)
Translates to: VFHCVTLETAYLQWHSSASFCCT*TTLWKL
Trigger: AAGTTTCCAGAGGGTTGTTCATGTACAACAGAAGGA...AGCAGAGCTGTGCCACTGTAAATAGGCAGTCTCTAAAGTTACACAATGGAAAAC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000017694.7
ENSMUST00000108239.7
CDS-3UTR TCA 90 bp ATAACTGTTTTCCATTGTGTAACTTTAGAGACTGCCTATTTACAGTGGCACAGCCCTACCACTTCGCTGTaGAGAGGCATTCACTTCAAA +
Preference number: 4 (lower is better)
Translates to: ITVFHCVTLETAYLQWHSPTTSL*RGIHFK
Trigger: TTTGAAGTGAATGCCTCTTCACAGCGAAGTGGTAGG...GCTGTGCCACTGTAAATAGGCAGTCTCTAAAGTTACACAATGGAAAACAGTTAT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000017694.7
ENSMUST00000108239.7
CDS-3UTR TCA 90 bp AGCTCTTCTTTAAAGTCACCATACTCTAGAGTCATCAGGACCACACAGTCTCTAAATTCGGTGAGAACCTaGATGAGTTTCTGCCATTCT +
Preference number: 4 (lower is better)
Translates to: SSSLKSPYSRVIRTTQSLNSVRT*MSFCHS
Trigger: AGAATGGCAGAAACTCATTCAGGTTCTCACCGAATT...TAGAGACTGTGTGGTCCTGATGACTCTAGAGTATGGTGACTTTAAAGAAGAGCT
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000017694.7
ENSMUST00000108239.7
CDS-3UTR TCA 90 bp ACCAAAAACAAAAACCAACAACAAACGCCATACTCAAATGGGAACAGCAGTCAGCTTCCATTTGTCCAGTaGAAGGCACTTCTACCCAAT +
Preference number: 4 (lower is better)
Translates to: TKNKNQQQTPYSNGNSSQLPFVQ*KALLPN
Trigger: ATTGGGTAGAAGTGCCTTTCACTGGACAAATGGAAG...CTGACTGCTGTTCCCATTTGAGTATGGCGTTTGTTGTTGGTTTTTGTTTTTGGT
42% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000017694.7
ENSMUST00000108239.7
CDS-3UTR TCA 90 bp ACCAAAAACAAAAACCAACAACAAACGCCATACTCAAATGGGAACAGCAGTCAGGGACTCCAGTGCTTTTaGAATGGTAGAAGAACACTC +
Preference number: 4 (lower is better)
Translates to: TKNKNQQQTPYSNGNSSQGLQCF*NGRRTL
Trigger: GAGTGTTCTTCTACCATTTCAAAAGCACTGGAGTCC...CTGACTGCTGTTCCCATTTGAGTATGGCGTTTGTTGTTGGTTTTTGTTTTTGGT
42% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 2 transcripts:
ENSMUST00000017694.7
ENSMUST00000108239.7
CDS-3UTR GCA 90 bp AGCTCTTCTTTAAAGTCACCATACTCTAGAGTCATCAGGACCACACAGTCTCTAAGTGGGGTGAACTTGTaGAAGAACAGTAACTGTCTT +
Preference number: 4 (lower is better)
Translates to: SSSLKSPYSRVIRTTQSLSGVNL*KNSNCL
Trigger: AAGACAGTTACTGTTCTTGCACAAGTTCACCCCACT...TAGAGACTGTGTGGTCCTGATGACTCTAGAGTATGGTGACTTTAAAGAAGAGCT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000017694.7
ENSMUST00000108239.7
CDS-3UTR GCA 90 bp ATAACTGTTTTCCATTGTGTAACTTTAGAGACTGCCTATTTACAGTGGCACAGCGTCTTTCCTCCATGCTaGACTTTGGTACTGAAGCCT +
Preference number: 4 (lower is better)
Translates to: ITVFHCVTLETAYLQWHSVFPPC*TLVLKP
Trigger: AGGCTTCAGTACCAAAGTGCAGCATGGAGGAAAGAC...GCTGTGCCACTGTAAATAGGCAGTCTCTAAAGTTACACAATGGAAAACAGTTAT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000017694.7
ENSMUST00000108239.7
CDS-3UTR GCA 90 bp AGCTCTTCTTTAAAGTCACCATACTCTAGAGTCATCAGGACCACACAGTCTCTAGCTGTATACAGGTTGTaGTTTTCTGATGTTCTGGCT +
Preference number: 4 (lower is better)
Translates to: SSSLKSPYSRVIRTTQSLAVYRL*FSDVLA
Trigger: AGCCAGAACATCAGAAAAGCACAACCTGTATACAGC...TAGAGACTGTGTGGTCCTGATGACTCTAGAGTATGGTGACTTTAAAGAAGAGCT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000017694.7
ENSMUST00000108239.7
CDS-3UTR GCA 90 bp AGCTCTTCTTTAAAGTCACCATACTCTAGAGTCATCAGGACCACACAGTCTCTATCCGCCAATTTGGAATaGTTTTGCTTCCTCAATCAG +
Preference number: 4 (lower is better)
Translates to: SSSLKSPYSRVIRTTQSLSANLE*FCFLNQ
Trigger: CTGATTGAGGAAGCAAAAGCATTCCAAATTGGCGGA...TAGAGACTGTGTGGTCCTGATGACTCTAGAGTATGGTGACTTTAAAGAAGAGCT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000017694.7
ENSMUST00000108239.7
CDS-3UTR GCA 90 bp GTTTTCCATTGTGTAACTTTAGAGACTGCCTATTTACAGTGGCACAGCTCTGCTTGGTCGTTTAGTTGTTaGCATGAAGGTTTTGACTGC +
Preference number: 4 (lower is better)
Translates to: VFHCVTLETAYLQWHSSAWSFSC*HEGFDC
Trigger: GCAGTCAAAACCTTCATGGCAACAACTAAACGACCA...AGCAGAGCTGTGCCACTGTAAATAGGCAGTCTCTAAAGTTACACAATGGAAAAC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000017694.7
ENSMUST00000108239.7
CDS-3UTR GCA 90 bp ACCAAAAACAAAAACCAACAACAAACGCCATACTCAAATGGGAACAGCAGTCAGAGTGGGAAACGAGCATaGAACACTTCTTCTCTGCTA +
Preference number: 4 (lower is better)
Translates to: TKNKNQQQTPYSNGNSSQSGKRA*NTSSLL
Trigger: TAGCAGAGAAGAAGTGTTGCATGCTCGTTTCCCACT...CTGACTGCTGTTCCCATTTGAGTATGGCGTTTGTTGTTGGTTTTTGTTTTTGGT
42% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000017694.7
ENSMUST00000108239.7
CDS-3UTR GCA 90 bp AAGGAGCTTGAGACGGGGATTACAAAATTCTGGAAGGAGATTAGGAGTAGCCTAGGGTCTCTTTCTAATTaGTTGCATGAATTCAAGGAC +
Preference number: 4 (lower is better)
Translates to: KELETGITKFWKEIRSSLGSLSN*LHEFKD
Trigger: GTCCTTGAATTCATGCAAGCAATTAGAAAGAGACCC...TAGGCTACTCCTAATCTCCTTCCAGAATTTTGTAATCCCCGTCTCAAGCTCCTT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000017694.7
ENSMUST00000108239.7
CDS-3UTR CCA 90 bp ACCAAAAACAAAAACCAACAACAAACGCCATACTCAAATGGGAACAGCAGTCAGGGAGGACTTAGTATTTaGCTGGTTTCTGCTGTCTTC +
Preference number: 4 (lower is better)
Translates to: TKNKNQQQTPYSNGNSSQGGLSI*LVSAVF
Trigger: GAAGACAGCAGAAACCAGCCAAATACTAAGTCCTCC...CTGACTGCTGTTCCCATTTGAGTATGGCGTTTGTTGTTGGTTTTTGTTTTTGGT
42% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000017694.7
ENSMUST00000108239.7
CDS-3UTR CCA 90 bp AGCTCTTCTTTAAAGTCACCATACTCTAGAGTCATCAGGACCACACAGTCTCTATCACTTGTAGATAGCTaGCAACATTTAGCAGGGAAG +
Preference number: 4 (lower is better)
Translates to: SSSLKSPYSRVIRTTQSLSLVDS*QHLAGK
Trigger: CTTCCCTGCTAAATGTTGCCAGCTATCTACAAGTGA...TAGAGACTGTGTGGTCCTGATGACTCTAGAGTATGGTGACTTTAAAGAAGAGCT
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000017694.7
ENSMUST00000108239.7
CDS-3UTR CCA 90 bp ACCAAAAACAAAAACCAACAACAAACGCCATACTCAAATGGGAACAGCAGTCAGGACTTTCTCAATGGCTaGTCTTTTGACTGCTTCCTG +
Preference number: 4 (lower is better)
Translates to: TKNKNQQQTPYSNGNSSQDFLNG*SFDCFL
Trigger: CAGGAAGCAGTCAAAAGACCAGCCATTGAGAAAGTC...CTGACTGCTGTTCCCATTTGAGTATGGCGTTTGTTGTTGGTTTTTGTTTTTGGT
42% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 2 transcripts:
ENSMUST00000017694.7
ENSMUST00000108239.7
CDS-3UTR TCA 90 bp AGCTCTTCTTTAAAGTCACCATACTCTAGAGTCATCAGGACCACACAGTCTCTACTTCTCGGTTGTGAGTaGGGTCTTTCTAAAATAATG +
Preference number: 4 (lower is better)
Translates to: SSSLKSPYSRVIRTTQSLLLGCE*GLSKIM
Trigger: CATTATTTTAGAAAGACCTCACTCACAACCGAGAAG...TAGAGACTGTGTGGTCCTGATGACTCTAGAGTATGGTGACTTTAAAGAAGAGCT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000017694.7
ENSMUST00000108239.7
CDS-3UTR TCA 90 bp AAGGAGCTTGAGACGGGGATTACAAAATTCTGGAAGGAGATTAGGAGTAGCCTACTTCGTAGGCTATTTTaGTCCTGTTCATCTTTTAAG +
Preference number: 4 (lower is better)
Translates to: KELETGITKFWKEIRSSLLRRLF*SCSSFK
Trigger: CTTAAAAGATGAACAGGATCAAAATAGCCTACGAAG...TAGGCTACTCCTAATCTCCTTCCAGAATTTTGTAATCCCCGTCTCAAGCTCCTT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 2 transcripts:
ENSMUST00000017694.7
ENSMUST00000108239.7
CDS-3UTR TCA 90 bp GTTTTCCATTGTGTAACTTTAGAGACTGCCTATTTACAGTGGCACAGCTCTGCTTGTGCTGCTGCTTCTTaGCTTATTTCTATTACACAG +
Preference number: 4 (lower is better)
Translates to: VFHCVTLETAYLQWHSSACAAAS*LISITQ
Trigger: CTGTGTAATAGAAATAAGTCAAGAAGCAGCAGCACA...AGCAGAGCTGTGCCACTGTAAATAGGCAGTCTCTAAAGTTACACAATGGAAAAC
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000017694.7
ENSMUST00000108239.7
CDS-3UTR TCA 90 bp AAGGAGCTTGAGACGGGGATTACAAAATTCTGGAAGGAGATTAGGAGTAGCCTATGTTCTGATGAATCTTaGCTGCTTTCATCCAAATCA +
Preference number: 4 (lower is better)
Translates to: KELETGITKFWKEIRSSLCSDES*LLSSKS
Trigger: TGATTTGGATGAAAGCAGTCAAGATTCATCAGAACA...TAGGCTACTCCTAATCTCCTTCCAGAATTTTGTAATCCCCGTCTCAAGCTCCTT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000017694.7
ENSMUST00000108239.7
CDS-3UTR TCA 90 bp AAGGAGCTTGAGACGGGGATTACAAAATTCTGGAAGGAGATTAGGAGTAGCCTATGTACATCACAATCCTaGGTTTGTTCTGATGAATCT +
Preference number: 4 (lower is better)
Translates to: KELETGITKFWKEIRSSLCTSQS*VCSDES
Trigger: AGATTCATCAGAACAAACTCAGGATTGTGATGTACA...TAGGCTACTCCTAATCTCCTTCCAGAATTTTGTAATCCCCGTCTCAAGCTCCTT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000017694.7
ENSMUST00000108239.7
CDS-3UTR TCA 90 bp ACCAAAAACAAAAACCAACAACAAACGCCATACTCAAATGGGAACAGCAGTCAGTCCTTCTGTTGTACATaGACAACCCTCTGGAAACTT +
Preference number: 4 (lower is better)
Translates to: TKNKNQQQTPYSNGNSSQSFCCT*TTLWKL
Trigger: AAGTTTCCAGAGGGTTGTTCATGTACAACAGAAGGA...CTGACTGCTGTTCCCATTTGAGTATGGCGTTTGTTGTTGGTTTTTGTTTTTGGT
41% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000017694.7
ENSMUST00000108239.7
CDS-3UTR TCA 90 bp AGCTCTTCTTTAAAGTCACCATACTCTAGAGTCATCAGGACCACACAGTCTCTACTTTTGGTTTCTTTTTaGCTGACATCAGGCTGTAGT +
Preference number: 4 (lower is better)
Translates to: SSSLKSPYSRVIRTTQSLLLVSF*LTSGCS
Trigger: ACTACAGCCTGATGTCAGTCAAAAAGAAACCAAAAG...TAGAGACTGTGTGGTCCTGATGACTCTAGAGTATGGTGACTTTAAAGAAGAGCT
41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000017694.7
ENSMUST00000108239.7
CDS-3UTR TCA 90 bp GTTTTCCATTGTGTAACTTTAGAGACTGCCTATTTACAGTGGCACAGCTCTGCTCTTTTGGTTTCTTTTTaGCTGACATCAGGCTGTAGT +
Preference number: 4 (lower is better)
Translates to: VFHCVTLETAYLQWHSSALLVSF*LTSGCS
Trigger: ACTACAGCCTGATGTCAGTCAAAAAGAAACCAAAAG...AGCAGAGCTGTGCCACTGTAAATAGGCAGTCTCTAAAGTTACACAATGGAAAAC
41% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000017694.7
ENSMUST00000108239.7
CDS-3UTR TCA 90 bp ATAACTGTTTTCCATTGTGTAACTTTAGAGACTGCCTATTTACAGTGGCACAGCTTCGTCAAGGTCTTTTaGTCTCCCCTTCATCTCTTC +
Preference number: 4 (lower is better)
Translates to: ITVFHCVTLETAYLQWHSFVKVF*SPLHLF
Trigger: GAAGAGATGAAGGGGAGATCAAAAGACCTTGACGAA...GCTGTGCCACTGTAAATAGGCAGTCTCTAAAGTTACACAATGGAAAACAGTTAT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000017694.7
ENSMUST00000108239.7
CDS-3UTR TCA 90 bp AGCTCTTCTTTAAAGTCACCATACTCTAGAGTCATCAGGACCACACAGTCTCTAATTCTCTTCATCATCTaGACTGCCTTTAAAGTCCGT +
Preference number: 4 (lower is better)
Translates to: SSSLKSPYSRVIRTTQSLILFII*TAFKVR
Trigger: ACGGACTTTAAAGGCAGTTCAGATGATGAAGAGAAT...TAGAGACTGTGTGGTCCTGATGACTCTAGAGTATGGTGACTTTAAAGAAGAGCT
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000017694.7
ENSMUST00000108239.7
CDS-3UTR TCA 90 bp AGCTCTTCTTTAAAGTCACCATACTCTAGAGTCATCAGGACCACACAGTCTCTAGAAACAGGGTTTTTGTaGGTTTACACCTTGCTTATC +
Preference number: 4 (lower is better)
Translates to: SSSLKSPYSRVIRTTQSLETGFL*VYTLLI
Trigger: GATAAGCAAGGTGTAAACTCACAAAAACCCTGTTTC...TAGAGACTGTGTGGTCCTGATGACTCTAGAGTATGGTGACTTTAAAGAAGAGCT
41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000017694.7
ENSMUST00000108239.7
CDS-3UTR TCA 90 bp ACCAAAAACAAAAACCAACAACAAACGCCATACTCAAATGGGAACAGCAGTCAGCCAAAGACGAATTTTTaGCTCCTTTGTCATCTCCCA +
Preference number: 4 (lower is better)
Translates to: TKNKNQQQTPYSNGNSSQPKTNF*LLCHLP
Trigger: TGGGAGATGACAAAGGAGTCAAAAATTCGTCTTTGG...CTGACTGCTGTTCCCATTTGAGTATGGCGTTTGTTGTTGGTTTTTGTTTTTGGT
41% GC, longest homopolymer 5 nt, total homopolymer stretches 15 nt.
Matches the following 2 transcripts:
ENSMUST00000017694.7
ENSMUST00000108239.7
CDS-3UTR TCA 90 bp ATAACTGTTTTCCATTGTGTAACTTTAGAGACTGCCTATTTACAGTGGCACAGCGGACTCCAGTGCTTTTaGAATGGTAGAAGAACACTC +
Preference number: 4 (lower is better)
Translates to: ITVFHCVTLETAYLQWHSGLQCF*NGRRTL
Trigger: GAGTGTTCTTCTACCATTTCAAAAGCACTGGAGTCC...GCTGTGCCACTGTAAATAGGCAGTCTCTAAAGTTACACAATGGAAAACAGTTAT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000017694.7
ENSMUST00000108239.7
CDS-3UTR GCA 90 bp ACCAAAAACAAAAACCAACAACAAACGCCATACTCAAATGGGAACAGCAGTCAGAGTGGGGTGAACTTGTaGAAGAACAGTAACTGTCTT +
Preference number: 4 (lower is better)
Translates to: TKNKNQQQTPYSNGNSSQSGVNL*KNSNCL
Trigger: AAGACAGTTACTGTTCTTGCACAAGTTCACCCCACT...CTGACTGCTGTTCCCATTTGAGTATGGCGTTTGTTGTTGGTTTTTGTTTTTGGT
41% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 2 transcripts:
ENSMUST00000017694.7
ENSMUST00000108239.7
CDS-3UTR GCA 90 bp ATAACTGTTTTCCATTGTGTAACTTTAGAGACTGCCTATTTACAGTGGCACAGCTCACTTGGGTCTTTCTaGTTCTCCAGAGGTTTCTTG +
Preference number: 4 (lower is better)
Translates to: ITVFHCVTLETAYLQWHSSLGSF*FSRGFL
Trigger: CAAGAAACCTCTGGAGAAGCAGAAAGACCCAAGTGA...GCTGTGCCACTGTAAATAGGCAGTCTCTAAAGTTACACAATGGAAAACAGTTAT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000017694.7
ENSMUST00000108239.7
CDS-3UTR GCA 90 bp AGCTCTTCTTTAAAGTCACCATACTCTAGAGTCATCAGGACCACACAGTCTCTATTCTCTGTTTCCACCTaGAGTAGTCCTAGTTTTCTT +
Preference number: 4 (lower is better)
Translates to: SSSLKSPYSRVIRTTQSLFSVST*SSPSFL
Trigger: AAGAAAACTAGGACTACTGCAGGTGGAAACAGAGAA...TAGAGACTGTGTGGTCCTGATGACTCTAGAGTATGGTGACTTTAAAGAAGAGCT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000017694.7
ENSMUST00000108239.7
CDS-3UTR GCA 90 bp ACCAAAAACAAAAACCAACAACAAACGCCATACTCAAATGGGAACAGCAGTCAGTCCGCCAATTTGGAATaGTTTTGCTTCCTCAATCAG +
Preference number: 4 (lower is better)
Translates to: TKNKNQQQTPYSNGNSSQSANLE*FCFLNQ
Trigger: CTGATTGAGGAAGCAAAAGCATTCCAAATTGGCGGA...CTGACTGCTGTTCCCATTTGAGTATGGCGTTTGTTGTTGGTTTTTGTTTTTGGT
41% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 2 transcripts:
ENSMUST00000017694.7
ENSMUST00000108239.7
CDS-3UTR GCA 90 bp AAGGAGCTTGAGACGGGGATTACAAAATTCTGGAAGGAGATTAGGAGTAGCCTAGAAGGTGGCTTCAAATaGCATAACCAATATTCATCA +
Preference number: 4 (lower is better)
Translates to: KELETGITKFWKEIRSSLEGGFK*HNQYSS
Trigger: TGATGAATATTGGTTATGGCATTTGAAGCCACCTTC...TAGGCTACTCCTAATCTCCTTCCAGAATTTTGTAATCCCCGTCTCAAGCTCCTT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000017694.7
ENSMUST00000108239.7
CDS-3UTR GCA 90 bp AAGGAGCTTGAGACGGGGATTACAAAATTCTGGAAGGAGATTAGGAGTAGCCTACTCTTTCTAATTGCTTaGATGAATTCAAGGACTCCA +
Preference number: 4 (lower is better)
Translates to: KELETGITKFWKEIRSSLLFLIA*MNSRTP
Trigger: TGGAGTCCTTGAATTCATGCAAGCAATTAGAAAGAG...TAGGCTACTCCTAATCTCCTTCCAGAATTTTGTAATCCCCGTCTCAAGCTCCTT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000017694.7
ENSMUST00000108239.7
CDS-3UTR CCA 90 bp ACCAAAAACAAAAACCAACAACAAACGCCATACTCAAATGGGAACAGCAGTCAGAAGCAATGGGGGAGATaGCTTTATTTTGTACGCCTT +
Preference number: 4 (lower is better)
Translates to: TKNKNQQQTPYSNGNSSQKQWGR*LYFVRL
Trigger: AAGGCGTACAAAATAAAGCCATCTCCCCCATTGCTT...CTGACTGCTGTTCCCATTTGAGTATGGCGTTTGTTGTTGGTTTTTGTTTTTGGT
41% GC, longest homopolymer 5 nt, total homopolymer stretches 19 nt.
Matches the following 2 transcripts:
ENSMUST00000017694.7
ENSMUST00000108239.7
CDS-3UTR CCA 90 bp ATAACTGTTTTCCATTGTGTAACTTTAGAGACTGCCTATTTACAGTGGCACAGCGGAGGACTTAGTATTTaGCTGGTTTCTGCTGTCTTC +
Preference number: 4 (lower is better)
Translates to: ITVFHCVTLETAYLQWHSGGLSI*LVSAVF
Trigger: GAAGACAGCAGAAACCAGCCAAATACTAAGTCCTCC...GCTGTGCCACTGTAAATAGGCAGTCTCTAAAGTTACACAATGGAAAACAGTTAT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000017694.7
ENSMUST00000108239.7
CDS-3UTR CCA 90 bp GTTTTCCATTGTGTAACTTTAGAGACTGCCTATTTACAGTGGCACAGCTCTGCTTCTAATTGGCCCTCCTaGATCACAACATTAGATTTC +
Preference number: 4 (lower is better)
Translates to: VFHCVTLETAYLQWHSSASNWPS*ITTLDF
Trigger: GAAATCTAATGTTGTGATCCAGGAGGGCCAATTAGA...AGCAGAGCTGTGCCACTGTAAATAGGCAGTCTCTAAAGTTACACAATGGAAAAC
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000017694.7
ENSMUST00000108239.7
CDS-3UTR CCA 90 bp AGCTCTTCTTTAAAGTCACCATACTCTAGAGTCATCAGGACCACACAGTCTCTATCTAATTGGCCCTCCTaGATCACAACATTAGATTTC +
Preference number: 4 (lower is better)
Translates to: SSSLKSPYSRVIRTTQSLSNWPS*ITTLDF
Trigger: GAAATCTAATGTTGTGATCCAGGAGGGCCAATTAGA...TAGAGACTGTGTGGTCCTGATGACTCTAGAGTATGGTGACTTTAAAGAAGAGCT
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000017694.7
ENSMUST00000108239.7
CDS-3UTR CCA 90 bp GTTTTCCATTGTGTAACTTTAGAGACTGCCTATTTACAGTGGCACAGCTCTGCTAGCAGGATTACTTCTTaGATTTGGATTCAAGGTGGA +
Preference number: 4 (lower is better)
Translates to: VFHCVTLETAYLQWHSSASRITS*IWIQGG
Trigger: TCCACCTTGAATCCAAATCCAAGAAGTAATCCTGCT...AGCAGAGCTGTGCCACTGTAAATAGGCAGTCTCTAAAGTTACACAATGGAAAAC
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000017694.7
ENSMUST00000108239.7
CDS-3UTR CCA 90 bp AGCTCTTCTTTAAAGTCACCATACTCTAGAGTCATCAGGACCACACAGTCTCTAAGCAGGATTACTTCTTaGATTTGGATTCAAGGTGGA +
Preference number: 4 (lower is better)
Translates to: SSSLKSPYSRVIRTTQSLSRITS*IWIQGG
Trigger: TCCACCTTGAATCCAAATCCAAGAAGTAATCCTGCT...TAGAGACTGTGTGGTCCTGATGACTCTAGAGTATGGTGACTTTAAAGAAGAGCT
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000017694.7
ENSMUST00000108239.7
CDS-3UTR CCA 90 bp AGCTCTTCTTTAAAGTCACCATACTCTAGAGTCATCAGGACCACACAGTCTCTAAGAGAATTTAAACAGTaGGAAACGAGCATGCAACAC +
Preference number: 4 (lower is better)
Translates to: SSSLKSPYSRVIRTTQSLREFKQ*ETSMQH
Trigger: GTGTTGCATGCTCGTTTCCCACTGTTTAAATTCTCT...TAGAGACTGTGTGGTCCTGATGACTCTAGAGTATGGTGACTTTAAAGAAGAGCT
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000017694.7
ENSMUST00000108239.7
CDS-3UTR CCA 90 bp AAGGAGCTTGAGACGGGGATTACAAAATTCTGGAAGGAGATTAGGAGTAGCCTAAATGTTCCGAAGAGTTaGCAGGTAGTCAATTATACT +
Preference number: 4 (lower is better)
Translates to: KELETGITKFWKEIRSSLNVPKS*QVVNYT
Trigger: AGTATAATTGACTACCTGCCAACTCTTCGGAACATT...TAGGCTACTCCTAATCTCCTTCCAGAATTTTGTAATCCCCGTCTCAAGCTCCTT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000017694.7
ENSMUST00000108239.7
CDS-3UTR TCA 90 bp AGCTCTTCTTTAAAGTCACCATACTCTAGAGTCATCAGGACCACACAGTCTCTAGTAATGCATTGCTTTTaGGAACTTCTGATTTCTGTC +
Preference number: 4 (lower is better)
Translates to: SSSLKSPYSRVIRTTQSLVMHCF*ELLISV
Trigger: GACAGAAATCAGAAGTTCTCAAAAGCAATGCATTAC...TAGAGACTGTGTGGTCCTGATGACTCTAGAGTATGGTGACTTTAAAGAAGAGCT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000017694.7
ENSMUST00000108239.7
CDS-3UTR TCA 90 bp GTTTTCCATTGTGTAACTTTAGAGACTGCCTATTTACAGTGGCACAGCTCTGCTTGTTCTGATGAATCTTaGCTGCTTTCATCCAAATCA +
Preference number: 4 (lower is better)
Translates to: VFHCVTLETAYLQWHSSACSDES*LLSSKS
Trigger: TGATTTGGATGAAAGCAGTCAAGATTCATCAGAACA...AGCAGAGCTGTGCCACTGTAAATAGGCAGTCTCTAAAGTTACACAATGGAAAAC
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000017694.7
ENSMUST00000108239.7
CDS-3UTR TCA 90 bp ATAACTGTTTTCCATTGTGTAACTTTAGAGACTGCCTATTTACAGTGGCACAGCGCTTTCTTTGCAATCTaGCGTTTCAGTAAATCTGGC +
Preference number: 4 (lower is better)
Translates to: ITVFHCVTLETAYLQWHSAFFAI*RFSKSG
Trigger: GCCAGATTTACTGAAACGTCAGATTGCAAAGAAAGC...GCTGTGCCACTGTAAATAGGCAGTCTCTAAAGTTACACAATGGAAAACAGTTAT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000017694.7
ENSMUST00000108239.7
CDS-3UTR TCA 90 bp ACCAAAAACAAAAACCAACAACAAACGCCATACTCAAATGGGAACAGCAGTCAGTTGTACAAGAAGAGCTaGTTCTTTCGTCAAGGTCTT +
Preference number: 4 (lower is better)
Translates to: TKNKNQQQTPYSNGNSSQLYKKS*FFRQGL
Trigger: AAGACCTTGACGAAAGAATCAGCTCTTCTTGTACAA...CTGACTGCTGTTCCCATTTGAGTATGGCGTTTGTTGTTGGTTTTTGTTTTTGGT
40% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000017694.7
ENSMUST00000108239.7
CDS-3UTR TCA 90 bp ACCAAAAACAAAAACCAACAACAAACGCCATACTCAAATGGGAACAGCAGTCAGTTGGTTGATTTAGTCTaGATAAGTTGCCTCTGTTCC +
Preference number: 4 (lower is better)
Translates to: TKNKNQQQTPYSNGNSSQLVDLV*ISCLCS
Trigger: GGAACAGAGGCAACTTATTCAGACTAAATCAACCAA...CTGACTGCTGTTCCCATTTGAGTATGGCGTTTGTTGTTGGTTTTTGTTTTTGGT
40% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000017694.7
ENSMUST00000108239.7
CDS-3UTR TCA 90 bp ACCAAAAACAAAAACCAACAACAAACGCCATACTCAAATGGGAACAGCAGTCAGATCAGAGCCATCTTCTaGACAAACCAGTGTATTTCT +
Preference number: 4 (lower is better)
Translates to: TKNKNQQQTPYSNGNSSQIRAIF*TNQCIS
Trigger: AGAAATACACTGGTTTGTTCAGAAGATGGCTCTGAT...CTGACTGCTGTTCCCATTTGAGTATGGCGTTTGTTGTTGGTTTTTGTTTTTGGT
40% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000017694.7
ENSMUST00000108239.7
CDS-3UTR TCA 90 bp ATAACTGTTTTCCATTGTGTAACTTTAGAGACTGCCTATTTACAGTGGCACAGCAATTCGGTGAGAACCTaGATGAGTTTCTGCCATTCT +
Preference number: 4 (lower is better)
Translates to: ITVFHCVTLETAYLQWHSNSVRT*MSFCHS
Trigger: AGAATGGCAGAAACTCATTCAGGTTCTCACCGAATT...GCTGTGCCACTGTAAATAGGCAGTCTCTAAAGTTACACAATGGAAAACAGTTAT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000017694.7
ENSMUST00000108239.7
CDS-3UTR GCA 90 bp ATAACTGTTTTCCATTGTGTAACTTTAGAGACTGCCTATTTACAGTGGCACAGCCTTTTCTCCGCTTTTTaGATGGCTCAATCTCGTAGT +
Preference number: 4 (lower is better)
Translates to: ITVFHCVTLETAYLQWHSLFSAF*MAQSRS
Trigger: ACTACGAGATTGAGCCATGCAAAAAGCGGAGAAAAG...GCTGTGCCACTGTAAATAGGCAGTCTCTAAAGTTACACAATGGAAAACAGTTAT
40% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000017694.7
ENSMUST00000108239.7
CDS-3UTR GCA 90 bp AGCTCTTCTTTAAAGTCACCATACTCTAGAGTCATCAGGACCACACAGTCTCTAGAAGGTGGCTTCAAATaGCATAACCAATATTCATCA +
Preference number: 4 (lower is better)
Translates to: SSSLKSPYSRVIRTTQSLEGGFK*HNQYSS
Trigger: TGATGAATATTGGTTATGGCATTTGAAGCCACCTTC...TAGAGACTGTGTGGTCCTGATGACTCTAGAGTATGGTGACTTTAAAGAAGAGCT
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000017694.7
ENSMUST00000108239.7
CDS-3UTR GCA 90 bp ATAACTGTTTTCCATTGTGTAACTTTAGAGACTGCCTATTTACAGTGGCACAGCCTTCTGATTTCCCGTTaGCACTTGTTTCCTTTTGGT +
Preference number: 4 (lower is better)
Translates to: ITVFHCVTLETAYLQWHSLLISR*HLFPFG
Trigger: ACCAAAAGGAAACAAGTGGCAACGGGAAATCAGAAG...GCTGTGCCACTGTAAATAGGCAGTCTCTAAAGTTACACAATGGAAAACAGTTAT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000017694.7
ENSMUST00000108239.7
CDS-3UTR GCA 90 bp GTTTTCCATTGTGTAACTTTAGAGACTGCCTATTTACAGTGGCACAGCTCTGCTAAACCAGTGTATTTCTaGTATTTTCTCGACAGTGTG +
Preference number: 4 (lower is better)
Translates to: VFHCVTLETAYLQWHSSAKPVYF*YFLDSV
Trigger: CACACTGTCGAGAAAATAGCAGAAATACACTGGTTT...AGCAGAGCTGTGCCACTGTAAATAGGCAGTCTCTAAAGTTACACAATGGAAAAC
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000017694.7
ENSMUST00000108239.7
CDS-3UTR GCA 90 bp GTTTTCCATTGTGTAACTTTAGAGACTGCCTATTTACAGTGGCACAGCTCTGCTCACACTTTTAATAACTaGCATCCTCTTGTCAGCATT +
Preference number: 4 (lower is better)
Translates to: VFHCVTLETAYLQWHSSAHTFNN*HPLVSI
Trigger: AATGCTGACAAGAGGATGGCAGTTATTAAAAGTGTG...AGCAGAGCTGTGCCACTGTAAATAGGCAGTCTCTAAAGTTACACAATGGAAAAC
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000017694.7
ENSMUST00000108239.7
CDS-3UTR CCA 90 bp GTTTTCCATTGTGTAACTTTAGAGACTGCCTATTTACAGTGGCACAGCTCTGCTAATATTACTGGGTTTTaGTGGAGAGAAAACCTTGTC +
Preference number: 4 (lower is better)
Translates to: VFHCVTLETAYLQWHSSANITGF*WRENLV
Trigger: GACAAGGTTTTCTCTCCACCAAAACCCAGTAATATT...AGCAGAGCTGTGCCACTGTAAATAGGCAGTCTCTAAAGTTACACAATGGAAAAC
40% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000017694.7
ENSMUST00000108239.7
CDS-3UTR CCA 90 bp GTTTTCCATTGTGTAACTTTAGAGACTGCCTATTTACAGTGGCACAGCTCTGCTCTTCTGACTTTTCTCTaGTTCTCTTATAGAAGTTGG +
Preference number: 4 (lower is better)
Translates to: VFHCVTLETAYLQWHSSALLTFL*FSYRSW
Trigger: CCAACTTCTATAAGAGAACCAGAGAAAAGTCAGAAG...AGCAGAGCTGTGCCACTGTAAATAGGCAGTCTCTAAAGTTACACAATGGAAAAC
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000017694.7
ENSMUST00000108239.7
CDS-3UTR CCA 90 bp AGCTCTTCTTTAAAGTCACCATACTCTAGAGTCATCAGGACCACACAGTCTCTACTCTTTTGGTCCTTTTaGCAAGAAATAAAGGAGCAA +
Preference number: 4 (lower is better)
Translates to: SSSLKSPYSRVIRTTQSLLFWSF*QEIKEQ
Trigger: TTGCTCCTTTATTTCTTGCCAAAAGGACCAAAAGAG...TAGAGACTGTGTGGTCCTGATGACTCTAGAGTATGGTGACTTTAAAGAAGAGCT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000017694.7
ENSMUST00000108239.7
CDS-3UTR CCA 90 bp ACCAAAAACAAAAACCAACAACAAACGCCATACTCAAATGGGAACAGCAGTCAGAATCAAAGACAGGAATaGCTGCTCTTTTGGTCCTTT +
Preference number: 4 (lower is better)
Translates to: TKNKNQQQTPYSNGNSSQNQRQE*LLFWSF
Trigger: AAAGGACCAAAAGAGCAGCCATTCCTGTCTTTGATT...CTGACTGCTGTTCCCATTTGAGTATGGCGTTTGTTGTTGGTTTTTGTTTTTGGT
40% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 2 transcripts:
ENSMUST00000017694.7
ENSMUST00000108239.7
CDS-3UTR CCA 90 bp ATAACTGTTTTCCATTGTGTAACTTTAGAGACTGCCTATTTACAGTGGCACAGCTTTTCCCACTCCCGTTaGTCCTGTTATAAGAACAGT +
Preference number: 4 (lower is better)
Translates to: ITVFHCVTLETAYLQWHSFSHSR*SCYKNS
Trigger: ACTGTTCTTATAACAGGACCAACGGGAGTGGGAAAA...GCTGTGCCACTGTAAATAGGCAGTCTCTAAAGTTACACAATGGAAAACAGTTAT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000017694.7
ENSMUST00000108239.7
CDS-3UTR CCA 90 bp ACCAAAAACAAAAACCAACAACAAACGCCATACTCAAATGGGAACAGCAGTCAGTGTCGTGAGAATTACTaGTCGTTTAGTTGTTGCCAT +
Preference number: 4 (lower is better)
Translates to: TKNKNQQQTPYSNGNSSQCRENY*SFSCCH
Trigger: ATGGCAACAACTAAACGACCAGTAATTCTCACGACA...CTGACTGCTGTTCCCATTTGAGTATGGCGTTTGTTGTTGGTTTTTGTTTTTGGT
40% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000017694.7
ENSMUST00000108239.7
CDS-3UTR CCA 90 bp ATAACTGTTTTCCATTGTGTAACTTTAGAGACTGCCTATTTACAGTGGCACAGCTCACTTGTAGATAGCTaGCAACATTTAGCAGGGAAG +
Preference number: 4 (lower is better)
Translates to: ITVFHCVTLETAYLQWHSSLVDS*QHLAGK
Trigger: CTTCCCTGCTAAATGTTGCCAGCTATCTACAAGTGA...GCTGTGCCACTGTAAATAGGCAGTCTCTAAAGTTACACAATGGAAAACAGTTAT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000017694.7
ENSMUST00000108239.7
CDS-3UTR TCA 90 bp ATAACTGTTTTCCATTGTGTAACTTTAGAGACTGCCTATTTACAGTGGCACAGCTTGGTTGATTTAGTCTaGATAAGTTGCCTCTGTTCC +
Preference number: 4 (lower is better)
Translates to: ITVFHCVTLETAYLQWHSLVDLV*ISCLCS
Trigger: GGAACAGAGGCAACTTATTCAGACTAAATCAACCAA...GCTGTGCCACTGTAAATAGGCAGTCTCTAAAGTTACACAATGGAAAACAGTTAT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000017694.7
ENSMUST00000108239.7
CDS-3UTR TCA 90 bp ATAACTGTTTTCCATTGTGTAACTTTAGAGACTGCCTATTTACAGTGGCACAGCATCAGAGCCATCTTCTaGACAAACCAGTGTATTTCT +
Preference number: 4 (lower is better)
Translates to: ITVFHCVTLETAYLQWHSIRAIF*TNQCIS
Trigger: AGAAATACACTGGTTTGTTCAGAAGATGGCTCTGAT...GCTGTGCCACTGTAAATAGGCAGTCTCTAAAGTTACACAATGGAAAACAGTTAT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000017694.7
ENSMUST00000108239.7
CDS-3UTR GCA 90 bp ATAACTGTTTTCCATTGTGTAACTTTAGAGACTGCCTATTTACAGTGGCACAGCTTCTCCAGCTCAGGCTaGTTCTGTTTCAAGAAAATT +
Preference number: 4 (lower is better)
Translates to: ITVFHCVTLETAYLQWHSFSSSG*FCFKKI
Trigger: AATTTTCTTGAAACAGAAGCAGCCTGAGCTGGAGAA...GCTGTGCCACTGTAAATAGGCAGTCTCTAAAGTTACACAATGGAAAACAGTTAT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000017694.7
ENSMUST00000108239.7
CDS-3UTR CCA 90 bp ACCAAAAACAAAAACCAACAACAAACGCCATACTCAAATGGGAACAGCAGTCAGAATATTACTGGGTTTTaGTGGAGAGAAAACCTTGTC +
Preference number: 4 (lower is better)
Translates to: TKNKNQQQTPYSNGNSSQNITGF*WRENLV
Trigger: GACAAGGTTTTCTCTCCACCAAAACCCAGTAATATT...CTGACTGCTGTTCCCATTTGAGTATGGCGTTTGTTGTTGGTTTTTGTTTTTGGT
39% GC, longest homopolymer 5 nt, total homopolymer stretches 18 nt.
Matches the following 2 transcripts:
ENSMUST00000017694.7
ENSMUST00000108239.7
CDS-3UTR CCA 90 bp ATAACTGTTTTCCATTGTGTAACTTTAGAGACTGCCTATTTACAGTGGCACAGCAATCAAAGACAGGAATaGCTGCTCTTTTGGTCCTTT +
Preference number: 4 (lower is better)
Translates to: ITVFHCVTLETAYLQWHSNQRQE*LLFWSF
Trigger: AAAGGACCAAAAGAGCAGCCATTCCTGTCTTTGATT...GCTGTGCCACTGTAAATAGGCAGTCTCTAAAGTTACACAATGGAAAACAGTTAT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000017694.7
ENSMUST00000108239.7
CDS-3UTR CCA 90 bp ATAACTGTTTTCCATTGTGTAACTTTAGAGACTGCCTATTTACAGTGGCACAGCTGTCGTGAGAATTACTaGTCGTTTAGTTGTTGCCAT +
Preference number: 4 (lower is better)
Translates to: ITVFHCVTLETAYLQWHSCRENY*SFSCCH
Trigger: ATGGCAACAACTAAACGACCAGTAATTCTCACGACA...GCTGTGCCACTGTAAATAGGCAGTCTCTAAAGTTACACAATGGAAAACAGTTAT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000017694.7
ENSMUST00000108239.7
CDS-3UTR TCA 90 bp ATAACTGTTTTCCATTGTGTAACTTTAGAGACTGCCTATTTACAGTGGCACAGCTGTACATCACAATCCTaGGTTTGTTCTGATGAATCT +
Preference number: 4 (lower is better)
Translates to: ITVFHCVTLETAYLQWHSCTSQS*VCSDES
Trigger: AGATTCATCAGAACAAACTCAGGATTGTGATGTACA...GCTGTGCCACTGTAAATAGGCAGTCTCTAAAGTTACACAATGGAAAACAGTTAT
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000017694.7
ENSMUST00000108239.7
CDS-3UTR TCA 90 bp ATAACTGTTTTCCATTGTGTAACTTTAGAGACTGCCTATTTACAGTGGCACAGCAGAAAATTCTGGATTTaGGCACTTTATTTCCTCCAG +
Preference number: 4 (lower is better)
Translates to: ITVFHCVTLETAYLQWHSRKFWI*ALYFLQ
Trigger: CTGGAGGAAATAAAGTGCTCAAATCCAGAATTTTCT...GCTGTGCCACTGTAAATAGGCAGTCTCTAAAGTTACACAATGGAAAACAGTTAT
38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000017694.7
ENSMUST00000108239.7
CDS-3UTR GCA 90 bp ATAACTGTTTTCCATTGTGTAACTTTAGAGACTGCCTATTTACAGTGGCACAGCCTCTTCCACTTTAGCTaGCTTGTGACTTTTTACAAA +
Preference number: 4 (lower is better)
Translates to: ITVFHCVTLETAYLQWHSLFHFS*LVTFYK
Trigger: TTTGTAAAAAGTCACAAGGCAGCTAAAGTGGAAGAG...GCTGTGCCACTGTAAATAGGCAGTCTCTAAAGTTACACAATGGAAAACAGTTAT
38% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000017694.7
ENSMUST00000108239.7
CDS-3UTR GCA 90 bp ATAACTGTTTTCCATTGTGTAACTTTAGAGACTGCCTATTTACAGTGGCACAGCAAACCAGTGTATTTCTaGTATTTTCTCGACAGTGTG +
Preference number: 4 (lower is better)
Translates to: ITVFHCVTLETAYLQWHSKPVYF*YFLDSV
Trigger: CACACTGTCGAGAAAATAGCAGAAATACACTGGTTT...GCTGTGCCACTGTAAATAGGCAGTCTCTAAAGTTACACAATGGAAAACAGTTAT
38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000017694.7
ENSMUST00000108239.7
CDS-3UTR CCA 90 bp ATAACTGTTTTCCATTGTGTAACTTTAGAGACTGCCTATTTACAGTGGCACAGCGACTTAGTATTTGGCTaGTTTCTGCTGTCTTCAATA +
Preference number: 4 (lower is better)
Translates to: ITVFHCVTLETAYLQWHSDLVFG*FLLSSI
Trigger: TATTGAAGACAGCAGAAACCAGCCAAATACTAAGTC...GCTGTGCCACTGTAAATAGGCAGTCTCTAAAGTTACACAATGGAAAACAGTTAT
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000017694.7
ENSMUST00000108239.7
CDS-3UTR GCA 90 bp ATAACTGTTTTCCATTGTGTAACTTTAGAGACTGCCTATTTACAGTGGCACAGCCTGATGAATCTTGACTaGTTTCATCCAAATCAAAGA +
Preference number: 4 (lower is better)
Translates to: ITVFHCVTLETAYLQWHSLMNLD*FHPNQR
Trigger: TCTTTGATTTGGATGAAAGCAGTCAAGATTCATCAG...GCTGTGCCACTGTAAATAGGCAGTCTCTAAAGTTACACAATGGAAAACAGTTAT
37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000017694.7
ENSMUST00000108239.7
CDS GCA 90 bp GTCCTGGGATGGGGAGGCAATGTTCTTGAGTCCAAACAAAGCCTCTaGACAGCCAGTGTCACACCTGGGGAGGGCCACACGGTTCCTTTT +
Preference number: 5 (lower is better)
Translates to: VLGWGGNVLESKQSL*TASVTPGEGHTVPF
Trigger: AAAAGGAACCGTGTGGCCCTCCCCAGGTGTGACACTGGCTGTGCAGAGGCTTTGTTTGGACTCAAGAACATTGCCTCCCCATCCCAGGAC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000017694.7
ENSMUST00000108239.7
CDS CCA 90 bp GCTTCCCGACAATTCGCCTTCAGAACCACTTTTGACTGCTTCACCTaGCCCAGAAGGAACACAGGCTGGAACTGCAGGGTCAGGTATCTC +
Preference number: 5 (lower is better)
Translates to: ASRQFAFRTTFDCFT*PRRNTGWNCRVRYL
Trigger: GAGATACCTGACCCTGCAGTTCCAGCCTGTGTTCCTTCTGGGCCAGGTGAAGCAGTCAAAAGTGGTTCTGAAGGCGAATTGTCGGGAAGC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000017694.7
ENSMUST00000108239.7
CDS CCA 90 bp GGGGTGAACTTGTGCAAGAACAGTAACTGTCTTGAGGTGCAGCTGTaGCGATGGTTCGCAGCTTCCCGACAATTCGCCTTCAGAACCACT +
Preference number: 5 (lower is better)
Translates to: GVNLCKNSNCLEVQL*RWFAASRQFAFRTT
Trigger: AGTGGTTCTGAAGGCGAATTGTCGGGAAGCTGCGAACCATCGCCACAGCTGCACCTCAAGACAGTTACTGTTCTTGCACAAGTTCACCCC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000017694.7
ENSMUST00000108239.7
CDS CCA 90 bp AGAACCACTTTTGACTGCTTCACCTGGCCCAGAAGGAACACAGGCTaGAACTGCAGGGTCAGGTATCTCTTCCACTTTAGCTGCCTTGTG +
Preference number: 5 (lower is better)
Translates to: RTTFDCFTWPRRNTG*NCRVRYLFHFSCLV
Trigger: CACAAGGCAGCTAAAGTGGAAGAGATACCTGACCCTGCAGTTCCAGCCTGTGTTCCTTCTGGGCCAGGTGAAGCAGTCAAAAGTGGTTCT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000017694.7
ENSMUST00000108239.7
CDS CCA 90 bp AGCATTTGTTGCAGGCGTGCTGCAACTTCTCAGAGATCTCCTGATTaGTTGGCGTGTAGAGACATACTCCAGGCTACTTCCAGGCTCAGC +
Preference number: 5 (lower is better)
Translates to: SICCRRAATSQRSPD*LACRDILQATSRLS
Trigger: GCTGAGCCTGGAAGTAGCCTGGAGTATGTCTCTACACGCCAACCAATCAGGAGATCTCTGAGAAGTTGCAGCACGCCTGCAACAAATGCT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000017694.7
ENSMUST00000108239.7
CDS-3UTR CAA 90 bp AGACTGCCTATTTACAGTGGCACAGCTCTGCTGCTTGGCAGGAGAGGACAATTAGTCAGCTTGCTGTCTTaGCCACCATCCTCAGGCAGA +
Preference number: 5 (lower is better)
Translates to: RLPIYSGTALLLGRRGQLVSLLS*PPSSGR
Trigger: TCTGCCTGAGGATGGTGGCAAAGACAGCAAGCTGAC...TAATTGTCCTCTCCTGCCAAGCAGCAGAGCTGTGCCACTGTAAATAGGCAGTCT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000017694.7
ENSMUST00000108239.7
CDS-3UTR CAA 90 bp AGACTGCCTATTTACAGTGGCACAGCTCTGCTGCTTGGCAGGAGAGGACAATTATACCTCCCAGAGCATTaGTTGCAGGCGTGCTGCAAC +
Preference number: 5 (lower is better)
Translates to: RLPIYSGTALLLGRRGQLYLPEH*LQACCN
Trigger: GTTGCAGCACGCCTGCAACAAATGCTCTGGGAGGTA...TAATTGTCCTCTCCTGCCAAGCAGCAGAGCTGTGCCACTGTAAATAGGCAGTCT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000017694.7
ENSMUST00000108239.7
CDS-3UTR CAA 90 bp AGACTGCCTATTTACAGTGGCACAGCTCTGCTGCTTGGCAGGAGAGGACAATTACCTCCATGCTGCACTTaGGTACTGAAGCCTCAGAGT +
Preference number: 5 (lower is better)
Translates to: RLPIYSGTALLLGRRGQLPPCCT*VLKPQS
Trigger: ACTCTGAGGCTTCAGTACCAAAGTGCAGCATGGAGG...TAATTGTCCTCTCCTGCCAAGCAGCAGAGCTGTGCCACTGTAAATAGGCAGTCT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000017694.7
ENSMUST00000108239.7
CDS-3UTR CAA 90 bp CACAGCTCTGCTGCTTGGCAGGAGAGGACAATTACAGGAAAAGGGAAAAATGACTACCTCCCAGAGCATTaGTTGCAGGCGTGCTGCAAC +
Preference number: 5 (lower is better)
Translates to: HSSAAWQERTITGKGKNDYLPEH*LQACCN
Trigger: GTTGCAGCACGCCTGCAACAAATGCTCTGGGAGGTA...GTCATTTTTCCCTTTTCCTGTAATTGTCCTCTCCTGCCAAGCAGCAGAGCTGTG
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000017694.7
ENSMUST00000108239.7
CDS TCA 90 bp TCCTCAGGCAGACTAAGTTCATCTGCTAAGGGCACACTTTCAGACTaGCCCGTTACCTTGCTACGCTTCCTCTTCCTCAGTATCCTGTCA +
Preference number: 5 (lower is better)
Translates to: SSGRLSSSAKGTLSD*PVTLLRFLFLSILS
Trigger: TGACAGGATACTGAGGAAGAGGAAGCGTAGCAAGGTAACGGGTCAGTCTGAAAGTGTGCCCTTAGCAGATGAACTTAGTCTGCCTGAGGA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000017694.7
ENSMUST00000108239.7
CDS TCA 90 bp GCTTCAATAATGAAAGTAAGTCCTGGGATGGGGAGGCAATGTTCTTaGGTCCAAACAAAGCCTCTGCACAGCCAGTGTCACACCTGGGGA +
Preference number: 5 (lower is better)
Translates to: ASIMKVSPGMGRQCS*VQTKPLHSQCHTWG
Trigger: TCCCCAGGTGTGACACTGGCTGTGCAGAGGCTTTGTTTGGACTCAAGAACATTGCCTCCCCATCCCAGGACTTACTTTCATTATTGAAGC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000017694.7
ENSMUST00000108239.7
CDS GCA 90 bp TCCAGAGGTTTCTTGAATCCATTTTTGAGCGTGTCTGGCGGTGGCTaGCTAAATGCTCTCATGAACTGCTGTCTTTCCTCCATGCTGCAC +
Preference number: 5 (lower is better)
Translates to: SRGFLNPFLSVSGGG*LNALMNCCLSSMLH
Trigger: GTGCAGCATGGAGGAAAGACAGCAGTTCATGAGAGCATTTAGGCAGCCACCGCCAGACACGCTCAAAAATGGATTCAAGAAACCTCTGGA
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000017694.7
ENSMUST00000108239.7
CDS CCA 90 bp AACTTGTGCAAGAACAGTAACTGTCTTGAGGTGCAGCTGTGGCGATaGTTCGCAGCTTCCCGACAATTCGCCTTCAGAACCACTTTTGAC +
Preference number: 5 (lower is better)
Translates to: NLCKNSNCLEVQLWR*FAASRQFAFRTTFD
Trigger: GTCAAAAGTGGTTCTGAAGGCGAATTGTCGGGAAGCTGCGAACCATCGCCACAGCTGCACCTCAAGACAGTTACTGTTCTTGCACAAGTT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000017694.7
ENSMUST00000108239.7
CDS-3UTR CAA 90 bp AGACTGCCTATTTACAGTGGCACAGCTCTGCTGCTTGGCAGGAGAGGACAATTATTCTTGAATCCATTTTaGAGCGTGTCTGGCGGTGGC +
Preference number: 5 (lower is better)
Translates to: RLPIYSGTALLLGRRGQLFLNPF*SVSGGG
Trigger: GCCACCGCCAGACACGCTCAAAAATGGATTCAAGAA...TAATTGTCCTCTCCTGCCAAGCAGCAGAGCTGTGCCACTGTAAATAGGCAGTCT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000017694.7
ENSMUST00000108239.7
CDS-3UTR CAA 90 bp CACAGCTCTGCTGCTTGGCAGGAGAGGACAATTACAGGAAAAGGGAAAAATGACTCTGCCCACTTGTCTTaGGTGACGATGGAGGAAGCT +
Preference number: 5 (lower is better)
Translates to: HSSAAWQERTITGKGKNDSAHLS*VTMEEA
Trigger: AGCTTCCTCCATCGTCACCAAAGACAAGTGGGCAGA...GTCATTTTTCCCTTTTCCTGTAATTGTCCTCTCCTGCCAAGCAGCAGAGCTGTG
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000017694.7
ENSMUST00000108239.7
CDS TCA 90 bp GAAACGAGCATGCAACACTTCTTCTCTGCTAGTGTCTTAGGGGGCTaGGGTACAGAGTGGGGCTTGAAACCACTGTTCTGTGTCTTAATC +
Preference number: 5 (lower is better)
Translates to: ETSMQHFFSASVLGG*GTEWGLKPLFCVLI
Trigger: GATTAAGACACAGAACAGTGGTTTCAAGCCCCACTCTGTACCTCAGCCCCCTAAGACACTAGCAGAGAAGAAGTGTTGCATGCTCGTTTC
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000017694.7
ENSMUST00000108239.7
CDS CCA 90 bp CTTCTCCAGAGGTTTCTTGAATCCATTTTTGAGCGTGTCTGGCGGTaGCTGCCTAAATGCTCTCATGAACTGCTGTCTTTCCTCCATGCT +
Preference number: 5 (lower is better)
Translates to: LLQRFLESIFERVWR*LPKCSHELLSFLHA
Trigger: AGCATGGAGGAAAGACAGCAGTTCATGAGAGCATTTAGGCAGCCACCGCCAGACACGCTCAAAAATGGATTCAAGAAACCTCTGGAGAAG
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000017694.7
ENSMUST00000108239.7
CDS-3UTR CAA 90 bp AGACTGCCTATTTACAGTGGCACAGCTCTGCTGCTTGGCAGGAGAGGACAATTAGGCGTCTTACAGTCTTaGCTGTTGCCAACAAGCAAT +
Preference number: 5 (lower is better)
Translates to: RLPIYSGTALLLGRRGQLGVLQS*LLPTSN
Trigger: ATTGCTTGTTGGCAACAGCAAAGACTGTAAGACGCC...TAATTGTCCTCTCCTGCCAAGCAGCAGAGCTGTGCCACTGTAAATAGGCAGTCT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000017694.7
ENSMUST00000108239.7
CDS-3UTR CAA 90 bp CACAGCTCTGCTGCTTGGCAGGAGAGGACAATTACAGGAAAAGGGAAAAATGACGAAGGTTTAGTCAGCTaGCTGTCTTTGCCACCATCC +
Preference number: 5 (lower is better)
Translates to: HSSAAWQERTITGKGKNDEGLVS*LSLPPS
Trigger: GGATGGTGGCAAAGACAGCAAGCTGACTAAACCTTC...GTCATTTTTCCCTTTTCCTGTAATTGTCCTCTCCTGCCAAGCAGCAGAGCTGTG
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000017694.7
ENSMUST00000108239.7
CDS-3UTR CAA 90 bp CACAGCTCTGCTGCTTGGCAGGAGAGGACAATTACAGGAAAAGGGAAAAATGACGGGAGTGGGGTGAACTaGTGCAAGAACAGTAACTGT +
Preference number: 5 (lower is better)
Translates to: HSSAAWQERTITGKGKNDGSGVN*CKNSNC
Trigger: ACAGTTACTGTTCTTGCACAAGTTCACCCCACTCCC...GTCATTTTTCCCTTTTCCTGTAATTGTCCTCTCCTGCCAAGCAGCAGAGCTGTG
49% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000017694.7
ENSMUST00000108239.7
CDS-3UTR CAA 90 bp CACAGCTCTGCTGCTTGGCAGGAGAGGACAATTACAGGAAAAGGGAAAAATGACGTCGCCTTCTTCCTGTaGGATTCTTCAGCTCCAACA +
Preference number: 5 (lower is better)
Translates to: HSSAAWQERTITGKGKNDVAFFL*DSSAPT
Trigger: TGTTGGAGCTGAAGAATCCAACAGGAAGAAGGCGAC...GTCATTTTTCCCTTTTCCTGTAATTGTCCTCTCCTGCCAAGCAGCAGAGCTGTG
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000017694.7
ENSMUST00000108239.7
CDS TCA 90 bp GGTAGCTTCCTTCAGCTGAGACAGGATTTGCCTACCACTTCGCTGTaGAGAGGCATTCACTTCAAATATCTTAAACCCAAGCTCCTGAGC +
Preference number: 5 (lower is better)
Translates to: GSFLQLRQDLPTTSL*RGIHFKYLKPKLLS
Trigger: GCTCAGGAGCTTGGGTTTAAGATATTTGAAGTGAATGCCTCTTCACAGCGAAGTGGTAGGCAAATCCTGTCTCAGCTGAAGGAAGCTACC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000017694.7
ENSMUST00000108239.7
CDS CCA 90 bp TGGCGTCTTACAGTCTTTGCTGTTGCCAACAAGCAATGGGGGAGATaGCTTTATTTTGTACGCCTTTGTCGATTGTGGCTTCTCGGTTGT +
Preference number: 5 (lower is better)
Translates to: WRLTVFAVANKQWGR*LYFVRLCRLWLLGC
Trigger: ACAACCGAGAAGCCACAATCGACAAAGGCGTACAAAATAAAGCCATCTCCCCCATTGCTTGTTGGCAACAGCAAAGACTGTAAGACGCCA
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000017694.7
ENSMUST00000108239.7
CDS CCA 90 bp CTCCTGAGCACAAGCATACACGGCAGCAGTTTTTCCCACTCCCGTTaGTCCTGTTATAAGAACAGTGTTGCAAAGACGATTCTCTTCATC +
Preference number: 5 (lower is better)
Translates to: LLSTSIHGSSFSHSR*SCYKNSVAKTILFI
Trigger: GATGAAGAGAATCGTCTTTGCAACACTGTTCTTATAACAGGACCAACGGGAGTGGGAAAAACTGCTGCCGTGTATGCTTGTGCTCAGGAG
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000017694.7
ENSMUST00000108239.7
CDS CCA 90 bp TCAGCATTGTCTAGATTAGCTGCTGATTGGCGGAAGCATGCATCATaGCGCCTTTGTGAAACACAGACTGTGAGTTCATTGGTTGGGTCT +
Preference number: 5 (lower is better)
Translates to: SALSRLAADWRKHAS*RLCETQTVSSLVGS
Trigger: AGACCCAACCAATGAACTCACAGTCTGTGTTTCACAAAGGCGCCATGATGCATGCTTCCGCCAATCAGCAGCTAATCTAGACAATGCTGA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000017694.7
ENSMUST00000108239.7
CDS-3UTR CAA 90 bp AAGGAGCTTGAGACGGGGATTACAAAATTCTGGAAGGAGATTAGGAGTAGCCTATCTGCCCACTTGTCTTaGGTGACGATGGAGGAAGCT +
Preference number: 5 (lower is better)
Translates to: KELETGITKFWKEIRSSLSAHLS*VTMEEA
Trigger: AGCTTCCTCCATCGTCACCAAAGACAAGTGGGCAGA...TAGGCTACTCCTAATCTCCTTCCAGAATTTTGTAATCCCCGTCTCAAGCTCCTT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000017694.7
ENSMUST00000108239.7
CDS TCA 90 bp AGCTCTAATTGGCCCTCCTGGATCACAACATTAGATTTCCTCTTCTaGACTGGCTGCTCATTTTCTGGGTCAGAGAGACTATTCTCCAGC +
Preference number: 5 (lower is better)
Translates to: SSNWPSWITTLDFLF*TGCSFSGSERLFSS
Trigger: GCTGGAGAATAGTCTCTCTGACCCAGAAAATGAGCAGCCAGTTCAGAAGAGGAAATCTAATGTTGTGATCCAGGAGGGCCAATTAGAGCT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000017694.7
ENSMUST00000108239.7
CDS-3UTR CAA 90 bp ACCAAAAACAAAAACCAACAACAAACGCCATACTCAAATGGGAACAGCAGTCAGGTCAGCTTGCTGTCTTaGCCACCATCCTCAGGCAGA +
Preference number: 5 (lower is better)
Translates to: TKNKNQQQTPYSNGNSSQVSLLS*PPSSGR
Trigger: TCTGCCTGAGGATGGTGGCAAAGACAGCAAGCTGAC...CTGACTGCTGTTCCCATTTGAGTATGGCGTTTGTTGTTGGTTTTTGTTTTTGGT
47% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000017694.7
ENSMUST00000108239.7
CDS-3UTR CAA 90 bp AGACTGCCTATTTACAGTGGCACAGCTCTGCTGCTTGGCAGGAGAGGACAATTAATTACACAGAGACATTaGTACAGAGTCATGTGCCGT +
Preference number: 5 (lower is better)
Translates to: RLPIYSGTALLLGRRGQLITQRH*YRVMCR
Trigger: ACGGCACATGACTCTGTACAAATGTCTCTGTGTAAT...TAATTGTCCTCTCCTGCCAAGCAGCAGAGCTGTGCCACTGTAAATAGGCAGTCT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000017694.7
ENSMUST00000108239.7
CDS-3UTR CAA 90 bp CACAGCTCTGCTGCTTGGCAGGAGAGGACAATTACAGGAAAAGGGAAAAATGACACTTCTGATTTCCCGTaGCCACTTGTTTCCTTTTGG +
Preference number: 5 (lower is better)
Translates to: HSSAAWQERTITGKGKNDTSDFP*PLVSFW
Trigger: CCAAAAGGAAACAAGTGGCAACGGGAAATCAGAAGT...GTCATTTTTCCCTTTTCCTGTAATTGTCCTCTCCTGCCAAGCAGCAGAGCTGTG
47% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000017694.7
ENSMUST00000108239.7
CDS-3UTR CAA 90 bp AGACTGCCTATTTACAGTGGCACAGCTCTGCTGCTTGGCAGGAGAGGACAATTATTTCGTCAAGGTCTTTaGATCTCCCCTTCATCTCTT +
Preference number: 5 (lower is better)
Translates to: RLPIYSGTALLLGRRGQLFRQGL*ISPSSL
Trigger: AAGAGATGAAGGGGAGATCAAAAGACCTTGACGAAA...TAATTGTCCTCTCCTGCCAAGCAGCAGAGCTGTGCCACTGTAAATAGGCAGTCT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000017694.7
ENSMUST00000108239.7
CDS-3UTR CAA 90 bp AGACTGCCTATTTACAGTGGCACAGCTCTGCTGCTTGGCAGGAGAGGACAATTAGTTGCCATGAAGGTTTaGACTGCATTCAAAAACCCA +
Preference number: 5 (lower is better)
Translates to: RLPIYSGTALLLGRRGQLVAMKV*TAFKNP
Trigger: TGGGTTTTTGAATGCAGTCAAAACCTTCATGGCAAC...TAATTGTCCTCTCCTGCCAAGCAGCAGAGCTGTGCCACTGTAAATAGGCAGTCT
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000017694.7
ENSMUST00000108239.7
CDS-3UTR CAA 90 bp AGACTGCCTATTTACAGTGGCACAGCTCTGCTGCTTGGCAGGAGAGGACAATTACAGACTGTGAGTTCATaGGTTGGGTCTCTTTCTAAT +
Preference number: 5 (lower is better)
Translates to: RLPIYSGTALLLGRRGQLQTVSS*VGSLSN
Trigger: ATTAGAAAGAGACCCAACCAATGAACTCACAGTCTG...TAATTGTCCTCTCCTGCCAAGCAGCAGAGCTGTGCCACTGTAAATAGGCAGTCT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000017694.7
ENSMUST00000108239.7
CDS TCA 90 bp GTAAAGCTCAGTGCTTCTGCAGTTGCTTTTAATTCTCCAGCGCTCTaGGGAGCCCACCTGTCTCTATTCTCAAGACTAAACTCATCACAA +
Preference number: 5 (lower is better)
Translates to: VKLSASAVAFNSPAL*GAHLSLFSRLNSSQ
Trigger: TTGTGATGAGTTTAGTCTTGAGAATAGAGACAGGTGGGCTCCTCAGAGCGCTGGAGAATTAAAAGCAACTGCAGAAGCACTGAGCTTTAC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000017694.7
ENSMUST00000108239.7
CDS GCA 90 bp CTGCGAGAACCTCCACATGTTCCTTGTAAAGGGAAACAGAAGCACTaGTTTCCACACAATCACTTAAACCACCGTCCTCCTTACTATCAT +
Preference number: 5 (lower is better)
Translates to: LREPPHVPCKGKQKH*FPHNHLNHRPPYYH
Trigger: ATGATAGTAAGGAGGACGGTGGTTTAAGTGATTGTGTGGAAAGCAGTGCTTCTGTTTCCCTTTACAAGGAACATGTGGAGGTTCTCGCAG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000017694.7
ENSMUST00000108239.7
CDS CCA 90 bp AGGTACAGAGTGGGGCTTGAAACCACTGTTCTGTGTCTTAATCTCTaGATTGCTGTCTCTTCTTATGTTGTCTTCTACAGACAAGGAGGG +
Preference number: 5 (lower is better)
Translates to: RYRVGLETTVLCLNL*IAVSSYVVFYRQGG
Trigger: CCCTCCTTGTCTGTAGAAGACAACATAAGAAGAGACAGCAATCCAGAGATTAAGACACAGAACAGTGGTTTCAAGCCCCACTCTGTACCT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000017694.7
ENSMUST00000108239.7
CDS-3UTR CAA 90 bp AGACTGCCTATTTACAGTGGCACAGCTCTGCTGCTTGGCAGGAGAGGACAATTAGAATATTACTGGGTTTaGGTGGAGAGAAAACCTTGT +
Preference number: 5 (lower is better)
Translates to: RLPIYSGTALLLGRRGQLEYYWV*VERKPC
Trigger: ACAAGGTTTTCTCTCCACCAAAACCCAGTAATATTC...TAATTGTCCTCTCCTGCCAAGCAGCAGAGCTGTGCCACTGTAAATAGGCAGTCT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000017694.7
ENSMUST00000108239.7
CDS-3UTR CAA 90 bp ACCAAAAACAAAAACCAACAACAAACGCCATACTCAAATGGGAACAGCAGTCAGCCTCCATGCTGCACTTaGGTACTGAAGCCTCAGAGT +
Preference number: 5 (lower is better)
Translates to: TKNKNQQQTPYSNGNSSQPPCCT*VLKPQS
Trigger: ACTCTGAGGCTTCAGTACCAAAGTGCAGCATGGAGG...CTGACTGCTGTTCCCATTTGAGTATGGCGTTTGTTGTTGGTTTTTGTTTTTGGT
46% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000017694.7
ENSMUST00000108239.7
CDS-3UTR CAA 90 bp AGCTCTTCTTTAAAGTCACCATACTCTAGAGTCATCAGGACCACACAGTCTCTATTCTTGAATCCATTTTaGAGCGTGTCTGGCGGTGGC +
Preference number: 5 (lower is better)
Translates to: SSSLKSPYSRVIRTTQSLFLNPF*SVSGGG
Trigger: GCCACCGCCAGACACGCTCAAAAATGGATTCAAGAA...TAGAGACTGTGTGGTCCTGATGACTCTAGAGTATGGTGACTTTAAAGAAGAGCT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000017694.7
ENSMUST00000108239.7
CDS-3UTR CAA 90 bp CACAGCTCTGCTGCTTGGCAGGAGAGGACAATTACAGGAAAAGGGAAAAATGACCTTGTACTCACTGCATaGTACACATCTAATGCAGCA +
Preference number: 5 (lower is better)
Translates to: HSSAAWQERTITGKGKNDLVLTA*YTSNAA
Trigger: TGCTGCATTAGATGTGTACAATGCAGTGAGTACAAG...GTCATTTTTCCCTTTTCCTGTAATTGTCCTCTCCTGCCAAGCAGCAGAGCTGTG
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000017694.7
ENSMUST00000108239.7
CDS-3UTR CAA 90 bp AGACTGCCTATTTACAGTGGCACAGCTCTGCTGCTTGGCAGGAGAGGACAATTATTGACAGCTAACTCATaGCCTATGAGTTCATTCGAA +
Preference number: 5 (lower is better)
Translates to: RLPIYSGTALLLGRRGQLLTANS*PMSSFE
Trigger: TTCGAATGAACTCATAGGCAATGAGTTAGCTGTCAA...TAATTGTCCTCTCCTGCCAAGCAGCAGAGCTGTGCCACTGTAAATAGGCAGTCT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000017694.7
ENSMUST00000108239.7
CDS-3UTR CAA 90 bp AGACTGCCTATTTACAGTGGCACAGCTCTGCTGCTTGGCAGGAGAGGACAATTATCTCTTTCTAATTGCTaGCATGAATTCAAGGACTCC +
Preference number: 5 (lower is better)
Translates to: RLPIYSGTALLLGRRGQLSLSNC*HEFKDS
Trigger: GGAGTCCTTGAATTCATGCAAGCAATTAGAAAGAGA...TAATTGTCCTCTCCTGCCAAGCAGCAGAGCTGTGCCACTGTAAATAGGCAGTCT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000017694.7
ENSMUST00000108239.7
CDS-3UTR CAA 90 bp AGACTGCCTATTTACAGTGGCACAGCTCTGCTGCTTGGCAGGAGAGGACAATTAGTCAATTATACTAGCTaGTTTATTACCCAGGGTCAG +
Preference number: 5 (lower is better)
Translates to: RLPIYSGTALLLGRRGQLVNYTS*FITQGQ
Trigger: CTGACCCTGGGTAATAAACAAGCTAGTATAATTGAC...TAATTGTCCTCTCCTGCCAAGCAGCAGAGCTGTGCCACTGTAAATAGGCAGTCT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000017694.7
ENSMUST00000108239.7
CDS TCA 90 bp GAGACAGTAATTGTACTCTCCTTTAAATCAGCTCTTTTGGTTGCATaGGTCCTGGAGTCGTTTTCCTCAGCTAGGGAAGGTTTAGTCAGC +
Preference number: 5 (lower is better)
Translates to: ETVIVLSFKSALLVA*VLESFSSAREGLVS
Trigger: GCTGACTAAACCTTCCCTAGCTGAGGAAAACGACTCCAGGACTCATGCAACCAAAAGAGCTGATTTAAAGGAGAGTACAATTACTGTCTC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000017694.7
ENSMUST00000108239.7
CDS TCA 90 bp ATTGGCGGAAGCATGCATCATGGCGCCTTTGTGAAACACAGACTGTaGGTTCATTGGTTGGGTCTCTTTCTAATTGCTTGCATGAATTCA +
Preference number: 5 (lower is better)
Translates to: IGGSMHHGAFVKHRL*VHWLGLFLIACMNS
Trigger: TGAATTCATGCAAGCAATTAGAAAGAGACCCAACCAATGAACTCACAGTCTGTGTTTCACAAAGGCGCCATGATGCATGCTTCCGCCAAT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000017694.7
ENSMUST00000108239.7
CDS GCA 90 bp GAACTGCTATCTCCTTCATGGACAGATTTTTCACTTGGGTCTTTCTaGTTCTCCAGAGGTTTCTTGAATCCATTTTTGAGCGTGTCTGGC +
Preference number: 5 (lower is better)
Translates to: ELLSPSWTDFSLGSF*FSRGFLNPFLSVSG
Trigger: GCCAGACACGCTCAAAAATGGATTCAAGAAACCTCTGGAGAAGCAGAAAGACCCAAGTGAAAAATCTGTCCATGAAGGAGATAGCAGTTC
44% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000017694.7
ENSMUST00000108239.7
CDS-3UTR CAA 90 bp ACCAAAAACAAAAACCAACAACAAACGCCATACTCAAATGGGAACAGCAGTCAGGAAGGTTTAGTCAGCTaGCTGTCTTTGCCACCATCC +
Preference number: 5 (lower is better)
Translates to: TKNKNQQQTPYSNGNSSQEGLVS*LSLPPS
Trigger: GGATGGTGGCAAAGACAGCAAGCTGACTAAACCTTC...CTGACTGCTGTTCCCATTTGAGTATGGCGTTTGTTGTTGGTTTTTGTTTTTGGT
44% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000017694.7
ENSMUST00000108239.7
CDS-3UTR CAA 90 bp ACCAAAAACAAAAACCAACAACAAACGCCATACTCAAATGGGAACAGCAGTCAGGGGAGTGGGGTGAACTaGTGCAAGAACAGTAACTGT +
Preference number: 5 (lower is better)
Translates to: TKNKNQQQTPYSNGNSSQGSGVN*CKNSNC
Trigger: ACAGTTACTGTTCTTGCACAAGTTCACCCCACTCCC...CTGACTGCTGTTCCCATTTGAGTATGGCGTTTGTTGTTGGTTTTTGTTTTTGGT
44% GC, longest homopolymer 5 nt, total homopolymer stretches 18 nt.
Matches the following 2 transcripts:
ENSMUST00000017694.7
ENSMUST00000108239.7
CDS-3UTR CAA 90 bp AAGGAGCTTGAGACGGGGATTACAAAATTCTGGAAGGAGATTAGGAGTAGCCTAGGAATGGCTGCTCTTTaGGTCCTTTTGGCAAGAAAT +
Preference number: 5 (lower is better)
Translates to: KELETGITKFWKEIRSSLGMAAL*VLLARN
Trigger: ATTTCTTGCCAAAAGGACCAAAAGAGCAGCCATTCC...TAGGCTACTCCTAATCTCCTTCCAGAATTTTGTAATCCCCGTCTCAAGCTCCTT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000017694.7
ENSMUST00000108239.7
CDS-3UTR CAA 90 bp AAGGAGCTTGAGACGGGGATTACAAAATTCTGGAAGGAGATTAGGAGTAGCCTACAGCAGGATTACTTCTaGGATTTGGATTCAAGGTGG +
Preference number: 5 (lower is better)
Translates to: KELETGITKFWKEIRSSLQQDYF*DLDSRW
Trigger: CCACCTTGAATCCAAATCCAAGAAGTAATCCTGCTG...TAGGCTACTCCTAATCTCCTTCCAGAATTTTGTAATCCCCGTCTCAAGCTCCTT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000017694.7
ENSMUST00000108239.7
CDS-3UTR CAA 90 bp CACAGCTCTGCTGCTTGGCAGGAGAGGACAATTACAGGAAAAGGGAAAAATGACTTGACAGCTAACTCATaGCCTATGAGTTCATTCGAA +
Preference number: 5 (lower is better)
Translates to: HSSAAWQERTITGKGKNDLTANS*PMSSFE
Trigger: TTCGAATGAACTCATAGGCAATGAGTTAGCTGTCAA...GTCATTTTTCCCTTTTCCTGTAATTGTCCTCTCCTGCCAAGCAGCAGAGCTGTG
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000017694.7
ENSMUST00000108239.7
CDS-3UTR CAA 90 bp AGACTGCCTATTTACAGTGGCACAGCTCTGCTGCTTGGCAGGAGAGGACAATTAGTTATAAGAACAGTGTaGCAAAGACGATTCTCTTCA +
Preference number: 5 (lower is better)
Translates to: RLPIYSGTALLLGRRGQLVIRTV*QRRFSS
Trigger: TGAAGAGAATCGTCTTTGCAACACTGTTCTTATAAC...TAATTGTCCTCTCCTGCCAAGCAGCAGAGCTGTGCCACTGTAAATAGGCAGTCT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000017694.7
ENSMUST00000108239.7
CDS-3UTR CAA 90 bp CACAGCTCTGCTGCTTGGCAGGAGAGGACAATTACAGGAAAAGGGAAAAATGACGGGAGTTTAACTTTTTaGGTGACTTGCCAATGTTGT +
Preference number: 5 (lower is better)
Translates to: HSSAAWQERTITGKGKNDGSLTF*VTCQCC
Trigger: ACAACATTGGCAAGTCACCAAAAAAGTTAAACTCCC...GTCATTTTTCCCTTTTCCTGTAATTGTCCTCTCCTGCCAAGCAGCAGAGCTGTG
44% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 2 transcripts:
ENSMUST00000017694.7
ENSMUST00000108239.7
CDS TCA 90 bp CAGTTCCAGAATCTCTGGAAGGATCTAGATTTGTACAAGAAGAGCTaGTTCTTTCGTCAAGGTCTTTTGATCTCCCCTTCATCTCTTCCG +
Preference number: 5 (lower is better)
Translates to: QFQNLWKDLDLYKKS*FFRQGLLISPSSLP
Trigger: CGGAAGAGATGAAGGGGAGATCAAAAGACCTTGACGAAAGAATCAGCTCTTCTTGTACAAATCTAGATCCTTCCAGAGATTCTGGAACTG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000017694.7
ENSMUST00000108239.7
CDS GCA 90 bp CTCTATTTGAGAATACTTCCAATGGCGTCTTACAGTCTTTGCTGTTaGCAACAAGCAATGGGGGAGATGGCTTTATTTTGTACGCCTTTG +
Preference number: 5 (lower is better)
Translates to: LYLRILPMASYSLCC*QQAMGEMALFCTPL
Trigger: CAAAGGCGTACAAAATAAAGCCATCTCCCCCATTGCTTGTTGGCAACAGCAAAGACTGTAAGACGCCATTGGAAGTATTCTCAAATAGAG
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000017694.7
ENSMUST00000108239.7
CDS GCA 90 bp AACACAGGCTGGAACTGCAGGGTCAGGTATCTCTTCCACTTTAGCTaGCTTGTGACTTTTTACAAATTCCTCATAGGAGACAGTAATTGT +
Preference number: 5 (lower is better)
Translates to: NTGWNCRVRYLFHFS*LVTFYKFLIGDSNC
Trigger: ACAATTACTGTCTCCTATGAGGAATTTGTAAAAAGTCACAAGGCAGCTAAAGTGGAAGAGATACCTGACCCTGCAGTTCCAGCCTGTGTT
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000017694.7
ENSMUST00000108239.7
CDS CCA 90 bp TCTTCCTTTGTTGTGATCTTGTGCTTCAATAATGAAAGTAAGTCCTaGGATGGGGAGGCAATGTTCTTGAGTCCAAACAAAGCCTCTGCA +
Preference number: 5 (lower is better)
Translates to: SSFVVILCFNNESKS*DGEAMFLSPNKASA
Trigger: TGCAGAGGCTTTGTTTGGACTCAAGAACATTGCCTCCCCATCCCAGGACTTACTTTCATTATTGAAGCACAAGATCACAACAAAGGAAGA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000017694.7
ENSMUST00000108239.7
CDS CCA 90 bp ATGAAGGACATGTTCTCCATGAACTCACTGAGAGAATTTAAACAGTaGGAAACGAGCATGCAACACTTCTTCTCTGCTAGTGTCTTAGGG +
Preference number: 5 (lower is better)
Translates to: MKDMFSMNSLREFKQ*ETSMQHFFSASVLG
Trigger: CCCTAAGACACTAGCAGAGAAGAAGTGTTGCATGCTCGTTTCCCACTGTTTAAATTCTCTCAGTGAGTTCATGGAGAACATGTCCTTCAT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000017694.7
ENSMUST00000108239.7
CDS-3UTR CAA 90 bp AAGGAGCTTGAGACGGGGATTACAAAATTCTGGAAGGAGATTAGGAGTAGCCTATTCTCCAGAGGTTTCTaGAATCCATTTTTGAGCGTG +
Preference number: 5 (lower is better)
Translates to: KELETGITKFWKEIRSSLFSRGF*NPFLSV
Trigger: CACGCTCAAAAATGGATTCAAGAAACCTCTGGAGAA...TAGGCTACTCCTAATCTCCTTCCAGAATTTTGTAATCCCCGTCTCAAGCTCCTT
43% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000017694.7
ENSMUST00000108239.7
CDS-3UTR CAA 90 bp AAGGAGCTTGAGACGGGGATTACAAAATTCTGGAAGGAGATTAGGAGTAGCCTATCTGCTGTATACAGGTaGTGCTTTTCTGATGTTCTG +
Preference number: 5 (lower is better)
Translates to: KELETGITKFWKEIRSSLSAVYR*CFSDVL
Trigger: CAGAACATCAGAAAAGCACAACCTGTATACAGCAGA...TAGGCTACTCCTAATCTCCTTCCAGAATTTTGTAATCCCCGTCTCAAGCTCCTT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000017694.7
ENSMUST00000108239.7
CDS-3UTR CAA 90 bp AAGGAGCTTGAGACGGGGATTACAAAATTCTGGAAGGAGATTAGGAGTAGCCTATTTCGTCAAGGTCTTTaGATCTCCCCTTCATCTCTT +
Preference number: 5 (lower is better)
Translates to: KELETGITKFWKEIRSSLFRQGL*ISPSSL
Trigger: AAGAGATGAAGGGGAGATCAAAAGACCTTGACGAAA...TAGGCTACTCCTAATCTCCTTCCAGAATTTTGTAATCCCCGTCTCAAGCTCCTT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000017694.7
ENSMUST00000108239.7
CDS-3UTR CAA 90 bp AAGGAGCTTGAGACGGGGATTACAAAATTCTGGAAGGAGATTAGGAGTAGCCTACAGACTGTGAGTTCATaGGTTGGGTCTCTTTCTAAT +
Preference number: 5 (lower is better)
Translates to: KELETGITKFWKEIRSSLQTVSS*VGSLSN
Trigger: ATTAGAAAGAGACCCAACCAATGAACTCACAGTCTG...TAGGCTACTCCTAATCTCCTTCCAGAATTTTGTAATCCCCGTCTCAAGCTCCTT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000017694.7
ENSMUST00000108239.7
CDS-3UTR CAA 90 bp AAGGAGCTTGAGACGGGGATTACAAAATTCTGGAAGGAGATTAGGAGTAGCCTAATCCTCTTGTCAGCATaGTCTAGATTAGCTGCTGAT +
Preference number: 5 (lower is better)
Translates to: KELETGITKFWKEIRSSLILLSA*SRLAAD
Trigger: ATCAGCAGCTAATCTAGACAATGCTGACAAGAGGAT...TAGGCTACTCCTAATCTCCTTCCAGAATTTTGTAATCCCCGTCTCAAGCTCCTT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000017694.7
ENSMUST00000108239.7
CDS TCA 90 bp CTATGTAGCAGATCGATATTTTGCACGTGGAATTCGGTGAGAACCTaGATGAGTTTCTGCCATTCTTCCTTTGTTGTGATCTTGTGCTTC +
Preference number: 5 (lower is better)
Translates to: LCSRSIFCTWNSVRT*MSFCHSSFVVILCF
Trigger: GAAGCACAAGATCACAACAAAGGAAGAATGGCAGAAACTCATTCAGGTTCTCACCGAATTCCACGTGCAAAATATCGATCTGCTACATAG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000017694.7
ENSMUST00000108239.7
CDS-3UTR CAA 90 bp ATAACTGTTTTCCATTGTGTAACTTTAGAGACTGCCTATTTACAGTGGCACAGCGTTTCGCAGGAAGAGTaGTCATCATCTTTTCTCCGC +
Preference number: 5 (lower is better)
Translates to: ITVFHCVTLETAYLQWHSVSQEE*SSSFLR
Trigger: GCGGAGAAAAGATGATGACAACTCTTCCTGCGAAAC...GCTGTGCCACTGTAAATAGGCAGTCTCTAAAGTTACACAATGGAAAACAGTTAT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000017694.7
ENSMUST00000108239.7
CDS-3UTR CAA 90 bp AAGGAGCTTGAGACGGGGATTACAAAATTCTGGAAGGAGATTAGGAGTAGCCTAGAATATTACTGGGTTTaGGTGGAGAGAAAACCTTGT +
Preference number: 5 (lower is better)
Translates to: KELETGITKFWKEIRSSLEYYWV*VERKPC
Trigger: ACAAGGTTTTCTCTCCACCAAAACCCAGTAATATTC...TAGGCTACTCCTAATCTCCTTCCAGAATTTTGTAATCCCCGTCTCAAGCTCCTT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000017694.7
ENSMUST00000108239.7
CDS-3UTR CAA 90 bp GTTTTCCATTGTGTAACTTTAGAGACTGCCTATTTACAGTGGCACAGCTCTGCTATTACACAGAGACATTaGTACAGAGTCATGTGCCGT +
Preference number: 5 (lower is better)
Translates to: VFHCVTLETAYLQWHSSAITQRH*YRVMCR
Trigger: ACGGCACATGACTCTGTACAAATGTCTCTGTGTAAT...AGCAGAGCTGTGCCACTGTAAATAGGCAGTCTCTAAAGTTACACAATGGAAAAC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000017694.7
ENSMUST00000108239.7
CDS-3UTR CAA 90 bp AGCTCTTCTTTAAAGTCACCATACTCTAGAGTCATCAGGACCACACAGTCTCTATCTGCTGTATACAGGTaGTGCTTTTCTGATGTTCTG +
Preference number: 5 (lower is better)
Translates to: SSSLKSPYSRVIRTTQSLSAVYR*CFSDVL
Trigger: CAGAACATCAGAAAAGCACAACCTGTATACAGCAGA...TAGAGACTGTGTGGTCCTGATGACTCTAGAGTATGGTGACTTTAAAGAAGAGCT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000017694.7
ENSMUST00000108239.7
CDS-3UTR CAA 90 bp ACCAAAAACAAAAACCAACAACAAACGCCATACTCAAATGGGAACAGCAGTCAGGGAATGGCTGCTCTTTaGGTCCTTTTGGCAAGAAAT +
Preference number: 5 (lower is better)
Translates to: TKNKNQQQTPYSNGNSSQGMAAL*VLLARN
Trigger: ATTTCTTGCCAAAAGGACCAAAAGAGCAGCCATTCC...CTGACTGCTGTTCCCATTTGAGTATGGCGTTTGTTGTTGGTTTTTGTTTTTGGT
42% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 2 transcripts:
ENSMUST00000017694.7
ENSMUST00000108239.7
CDS-3UTR CAA 90 bp GTTTTCCATTGTGTAACTTTAGAGACTGCCTATTTACAGTGGCACAGCTCTGCTTTCATCATCCTTCTGTaGTACATGAACAACCCTCTG +
Preference number: 5 (lower is better)
Translates to: VFHCVTLETAYLQWHSSAFIILL*YMNNPL
Trigger: CAGAGGGTTGTTCATGTACAACAGAAGGATGATGAA...AGCAGAGCTGTGCCACTGTAAATAGGCAGTCTCTAAAGTTACACAATGGAAAAC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000017694.7
ENSMUST00000108239.7
CDS-3UTR CAA 90 bp AGCTCTTCTTTAAAGTCACCATACTCTAGAGTCATCAGGACCACACAGTCTCTATTCATCATCCTTCTGTaGTACATGAACAACCCTCTG +
Preference number: 5 (lower is better)
Translates to: SSSLKSPYSRVIRTTQSLFIILL*YMNNPL
Trigger: CAGAGGGTTGTTCATGTACAACAGAAGGATGATGAA...TAGAGACTGTGTGGTCCTGATGACTCTAGAGTATGGTGACTTTAAAGAAGAGCT
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000017694.7
ENSMUST00000108239.7
CDS-3UTR CAA 90 bp AAGGAGCTTGAGACGGGGATTACAAAATTCTGGAAGGAGATTAGGAGTAGCCTAATTTCCCGTTGCCACTaGTTTCCTTTTGGTTTCTTT +
Preference number: 5 (lower is better)
Translates to: KELETGITKFWKEIRSSLISRCH*FPFGFF
Trigger: AAAGAAACCAAAAGGAAACAAGTGGCAACGGGAAAT...TAGGCTACTCCTAATCTCCTTCCAGAATTTTGTAATCCCCGTCTCAAGCTCCTT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000017694.7
ENSMUST00000108239.7
CDS-3UTR CAA 90 bp ACCAAAAACAAAAACCAACAACAAACGCCATACTCAAATGGGAACAGCAGTCAGACTTCTGATTTCCCGTaGCCACTTGTTTCCTTTTGG +
Preference number: 5 (lower is better)
Translates to: TKNKNQQQTPYSNGNSSQTSDFP*PLVSFW
Trigger: CCAAAAGGAAACAAGTGGCAACGGGAAATCAGAAGT...CTGACTGCTGTTCCCATTTGAGTATGGCGTTTGTTGTTGGTTTTTGTTTTTGGT
42% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 2 transcripts:
ENSMUST00000017694.7
ENSMUST00000108239.7
CDS-3UTR CAA 90 bp AAGGAGCTTGAGACGGGGATTACAAAATTCTGGAAGGAGATTAGGAGTAGCCTAGGGAGTTTAACTTTTTaGGTGACTTGCCAATGTTGT +
Preference number: 5 (lower is better)
Translates to: KELETGITKFWKEIRSSLGSLTF*VTCQCC
Trigger: ACAACATTGGCAAGTCACCAAAAAAGTTAAACTCCC...TAGGCTACTCCTAATCTCCTTCCAGAATTTTGTAATCCCCGTCTCAAGCTCCTT
42% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000017694.7
ENSMUST00000108239.7
CDS-3UTR CAA 90 bp GTTTTCCATTGTGTAACTTTAGAGACTGCCTATTTACAGTGGCACAGCTCTGCTGTTGCCATGAAGGTTTaGACTGCATTCAAAAACCCA +
Preference number: 5 (lower is better)
Translates to: VFHCVTLETAYLQWHSSAVAMKV*TAFKNP
Trigger: TGGGTTTTTGAATGCAGTCAAAACCTTCATGGCAAC...AGCAGAGCTGTGCCACTGTAAATAGGCAGTCTCTAAAGTTACACAATGGAAAAC
42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000017694.7
ENSMUST00000108239.7
CDS-3UTR CAA 90 bp AGCTCTTCTTTAAAGTCACCATACTCTAGAGTCATCAGGACCACACAGTCTCTACTGTCTCTTCTTATGTaGTCTTCTACAGACAAGGAG +
Preference number: 5 (lower is better)
Translates to: SSSLKSPYSRVIRTTQSLLSLLM*SSTDKE
Trigger: CTCCTTGTCTGTAGAAGACAACATAAGAAGAGACAG...TAGAGACTGTGTGGTCCTGATGACTCTAGAGTATGGTGACTTTAAAGAAGAGCT
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000017694.7
ENSMUST00000108239.7
CDS-3UTR CAA 90 bp AAGGAGCTTGAGACGGGGATTACAAAATTCTGGAAGGAGATTAGGAGTAGCCTAGTCTTAATCTCTGGATaGCTGTCTCTTCTTATGTTG +
Preference number: 5 (lower is better)
Translates to: KELETGITKFWKEIRSSLVLISG*LSLLML
Trigger: CAACATAAGAAGAGACAGCAATCCAGAGATTAAGAC...TAGGCTACTCCTAATCTCCTTCCAGAATTTTGTAATCCCCGTCTCAAGCTCCTT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000017694.7
ENSMUST00000108239.7
CDS TCA 90 bp CTCACTGCATTGTACACATCTAATGCAGCAGCTTTCTTTGCAATCTaGCGTTTCAGTAAATCTGGCAAACCACTCATTAGAAAATCACGC +
Preference number: 5 (lower is better)
Translates to: LTALYTSNAAAFFAI*RFSKSGKPLIRKSR
Trigger: GCGTGATTTTCTAATGAGTGGTTTGCCAGATTTACTGAAACGTCAGATTGCAAAGAAAGCTGCTGCATTAGATGTGTACAATGCAGTGAG
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000017694.7
ENSMUST00000108239.7
CDS GCA 90 bp AAATGTGGGATCACTTGTCGTGAGAATTACTGGTCGTTTAGTTGTTaGCATGAAGGTTTTGACTGCATTCAAAAACCCAGCATCTTCATC +
Preference number: 5 (lower is better)
Translates to: KCGITCRENYWSFSC*HEGFDCIQKPSIFI
Trigger: GATGAAGATGCTGGGTTTTTGAATGCAGTCAAAACCTTCATGGCAACAACTAAACGACCAGTAATTCTCACGACAAGTGATCCCACATTT
41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000017694.7
ENSMUST00000108239.7
CDS-3UTR CAA 90 bp AGCTCTTCTTTAAAGTCACCATACTCTAGAGTCATCAGGACCACACAGTCTCTAGTGTGCTGCTGCTTCTaGACTTATTTCTATTACACA +
Preference number: 5 (lower is better)
Translates to: SSSLKSPYSRVIRTTQSLVCCCF*TYFYYT
Trigger: TGTGTAATAGAAATAAGTCAAGAAGCAGCAGCACAC...TAGAGACTGTGTGGTCCTGATGACTCTAGAGTATGGTGACTTTAAAGAAGAGCT
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000017694.7
ENSMUST00000108239.7
CDS-3UTR CAA 90 bp ACCAAAAACAAAAACCAACAACAAACGCCATACTCAAATGGGAACAGCAGTCAGATGCAGCAGCTTTCTTaGCAATCTGACGTTTCAGTA +
Preference number: 5 (lower is better)
Translates to: TKNKNQQQTPYSNGNSSQMQQLS*QSDVSV
Trigger: TACTGAAACGTCAGATTGCAAAGAAAGCTGCTGCAT...CTGACTGCTGTTCCCATTTGAGTATGGCGTTTGTTGTTGGTTTTTGTTTTTGGT
41% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000017694.7
ENSMUST00000108239.7
CDS-3UTR CAA 90 bp ATAACTGTTTTCCATTGTGTAACTTTAGAGACTGCCTATTTACAGTGGCACAGCCAGCAGGATTACTTCTaGGATTTGGATTCAAGGTGG +
Preference number: 5 (lower is better)
Translates to: ITVFHCVTLETAYLQWHSQQDYF*DLDSRW
Trigger: CCACCTTGAATCCAAATCCAAGAAGTAATCCTGCTG...GCTGTGCCACTGTAAATAGGCAGTCTCTAAAGTTACACAATGGAAAACAGTTAT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000017694.7
ENSMUST00000108239.7
CDS-3UTR CAA 90 bp GTTTTCCATTGTGTAACTTTAGAGACTGCCTATTTACAGTGGCACAGCTCTGCTATTCGAATTCTGAGGTaGGTACTTTTCTGTCCAAAG +
Preference number: 5 (lower is better)
Translates to: VFHCVTLETAYLQWHSSAIRILR*VLFCPK
Trigger: CTTTGGACAGAAAAGTACCAACCTCAGAATTCGAAT...AGCAGAGCTGTGCCACTGTAAATAGGCAGTCTCTAAAGTTACACAATGGAAAAC
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000017694.7
ENSMUST00000108239.7
CDS-3UTR CAA 90 bp AGCTCTTCTTTAAAGTCACCATACTCTAGAGTCATCAGGACCACACAGTCTCTAACGTCGTCATTACTTTaGGATTTGGAGGACACTTTA +
Preference number: 5 (lower is better)
Translates to: SSSLKSPYSRVIRTTQSLTSSLL*DLEDTL
Trigger: TAAAGTGTCCTCCAAATCCAAAAGTAATGACGACGT...TAGAGACTGTGTGGTCCTGATGACTCTAGAGTATGGTGACTTTAAAGAAGAGCT
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000017694.7
ENSMUST00000108239.7
CDS-3UTR CAA 90 bp GTTTTCCATTGTGTAACTTTAGAGACTGCCTATTTACAGTGGCACAGCTCTGCTACGTCGTCATTACTTTaGGATTTGGAGGACACTTTA +
Preference number: 5 (lower is better)
Translates to: VFHCVTLETAYLQWHSSATSSLL*DLEDTL
Trigger: TAAAGTGTCCTCCAAATCCAAAAGTAATGACGACGT...AGCAGAGCTGTGCCACTGTAAATAGGCAGTCTCTAAAGTTACACAATGGAAAAC
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000017694.7
ENSMUST00000108239.7
CDS-3UTR CAA 90 bp AGCTCTTCTTTAAAGTCACCATACTCTAGAGTCATCAGGACCACACAGTCTCTAGTCTTAATCTCTGGATaGCTGTCTCTTCTTATGTTG +
Preference number: 5 (lower is better)
Translates to: SSSLKSPYSRVIRTTQSLVLISG*LSLLML
Trigger: CAACATAAGAAGAGACAGCAATCCAGAGATTAAGAC...TAGAGACTGTGTGGTCCTGATGACTCTAGAGTATGGTGACTTTAAAGAAGAGCT
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000017694.7
ENSMUST00000108239.7
CDS-3UTR CAA 90 bp GTTTTCCATTGTGTAACTTTAGAGACTGCCTATTTACAGTGGCACAGCTCTGCTTCTCTTTCTAATTGCTaGCATGAATTCAAGGACTCC +
Preference number: 5 (lower is better)
Translates to: VFHCVTLETAYLQWHSSASLSNC*HEFKDS
Trigger: GGAGTCCTTGAATTCATGCAAGCAATTAGAAAGAGA...AGCAGAGCTGTGCCACTGTAAATAGGCAGTCTCTAAAGTTACACAATGGAAAAC
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000017694.7
ENSMUST00000108239.7
CDS-3UTR CAA 90 bp GTTTTCCATTGTGTAACTTTAGAGACTGCCTATTTACAGTGGCACAGCTCTGCTATAACTGCCATCCTCTaGTCAGCATTGTCTAGATTA +
Preference number: 5 (lower is better)
Translates to: VFHCVTLETAYLQWHSSAITAIL*SALSRL
Trigger: TAATCTAGACAATGCTGACAAGAGGATGGCAGTTAT...AGCAGAGCTGTGCCACTGTAAATAGGCAGTCTCTAAAGTTACACAATGGAAAAC
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000017694.7
ENSMUST00000108239.7
CDS TCA 90 bp GGCTTCAAATGCCATAACCAATATTCATCATCCTTCTGTTGTACATaGACAACCCTCTGGAAACTTGTACTCACTGCATTGTACACATCT +
Preference number: 5 (lower is better)
Translates to: GFKCHNQYSSSFCCT*TTLWKLVLTALYTS
Trigger: AGATGTGTACAATGCAGTGAGTACAAGTTTCCAGAGGGTTGTTCATGTACAACAGAAGGATGATGAATATTGGTTATGGCATTTGAAGCC
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000017694.7
ENSMUST00000108239.7
CDS GCA 90 bp TGTGAAACACAGACTGTGAGTTCATTGGTTGGGTCTCTTTCTAATTaGTTGCATGAATTCAAGGACTCCAGTGCTTTTGAAATGGTAGAA +
Preference number: 5 (lower is better)
Translates to: CETQTVSSLVGSLSN*LHEFKDSSAFEMVE
Trigger: TTCTACCATTTCAAAAGCACTGGAGTCCTTGAATTCATGCAAGCAATTAGAAAGAGACCCAACCAATGAACTCACAGTCTGTGTTTCACA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000017694.7
ENSMUST00000108239.7
CDS-3UTR CAA 90 bp ATAACTGTTTTCCATTGTGTAACTTTAGAGACTGCCTATTTACAGTGGCACAGCCTTGTACTCACTGCATaGTACACATCTAATGCAGCA +
Preference number: 5 (lower is better)
Translates to: ITVFHCVTLETAYLQWHSLVLTA*YTSNAA
Trigger: TGCTGCATTAGATGTGTACAATGCAGTGAGTACAAG...GCTGTGCCACTGTAAATAGGCAGTCTCTAAAGTTACACAATGGAAAACAGTTAT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000017694.7
ENSMUST00000108239.7
CDS-3UTR CAA 90 bp ACCAAAAACAAAAACCAACAACAAACGCCATACTCAAATGGGAACAGCAGTCAGATTCGAATTCTGAGGTaGGTACTTTTCTGTCCAAAG +
Preference number: 5 (lower is better)
Translates to: TKNKNQQQTPYSNGNSSQIRILR*VLFCPK
Trigger: CTTTGGACAGAAAAGTACCAACCTCAGAATTCGAAT...CTGACTGCTGTTCCCATTTGAGTATGGCGTTTGTTGTTGGTTTTTGTTTTTGGT
40% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 2 transcripts:
ENSMUST00000017694.7
ENSMUST00000108239.7
CDS-3UTR CAA 90 bp GTTTTCCATTGTGTAACTTTAGAGACTGCCTATTTACAGTGGCACAGCTCTGCTCAACTATGTAACTTTTaGACAGCTAACTCATTGCCT +
Preference number: 5 (lower is better)
Translates to: VFHCVTLETAYLQWHSSAQLCNF*TANSLP
Trigger: AGGCAATGAGTTAGCTGTCAAAAAGTTACATAGTTG...AGCAGAGCTGTGCCACTGTAAATAGGCAGTCTCTAAAGTTACACAATGGAAAAC
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000017694.7
ENSMUST00000108239.7
CDS-3UTR CAA 90 bp ATAACTGTTTTCCATTGTGTAACTTTAGAGACTGCCTATTTACAGTGGCACAGCCTGTCTCTTCTTATGTaGTCTTCTACAGACAAGGAG +
Preference number: 5 (lower is better)
Translates to: ITVFHCVTLETAYLQWHSLSLLM*SSTDKE
Trigger: CTCCTTGTCTGTAGAAGACAACATAAGAAGAGACAG...GCTGTGCCACTGTAAATAGGCAGTCTCTAAAGTTACACAATGGAAAACAGTTAT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000017694.7
ENSMUST00000108239.7
CDS-3UTR CAA 90 bp ATAACTGTTTTCCATTGTGTAACTTTAGAGACTGCCTATTTACAGTGGCACAGCATCCTCTTGTCAGCATaGTCTAGATTAGCTGCTGAT +
Preference number: 5 (lower is better)
Translates to: ITVFHCVTLETAYLQWHSILLSA*SRLAAD
Trigger: ATCAGCAGCTAATCTAGACAATGCTGACAAGAGGAT...GCTGTGCCACTGTAAATAGGCAGTCTCTAAAGTTACACAATGGAAAACAGTTAT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000017694.7
ENSMUST00000108239.7
CDS TCA 90 bp AACTTTTTGACAGCTAACTCATTGCCTATGAGTTCATTCGAATTCTaGGGTTGGTACTTTTCTGTCCAAAGCATGTCTTCAGTTCCAGAA +
Preference number: 5 (lower is better)
Translates to: NFLTANSLPMSSFEF*GWYFSVQSMSSVPE
Trigger: TTCTGGAACTGAAGACATGCTTTGGACAGAAAAGTACCAACCTCAGAATTCGAATGAACTCATAGGCAATGAGTTAGCTGTCAAAAAGTT
39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000017694.7
ENSMUST00000108239.7
CDS CCA 90 bp CATTGTTTAGGATTTACTTTCTTTTTGGAGGACTTAGTATTTGGCTaGTTTCTGCTGTCTTCAATACTTTCTGCGAGAACCTCCACATGT +
Preference number: 5 (lower is better)
Translates to: HCLGFTFFLEDLVFG*FLLSSILSARTSTC
Trigger: ACATGTGGAGGTTCTCGCAGAAAGTATTGAAGACAGCAGAAACCAGCCAAATACTAAGTCCTCCAAAAAGAAAGTAAATCCTAAACAATG
39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000017694.7
ENSMUST00000108239.7
CDS-3UTR CAA 90 bp ACCAAAAACAAAAACCAACAACAAACGCCATACTCAAATGGGAACAGCAGTCAGGGATTTACTTTCTTTTaGGAGGACTTAGTATTTGGC +
Preference number: 5 (lower is better)
Translates to: TKNKNQQQTPYSNGNSSQGFTFF*EDLVFG
Trigger: GCCAAATACTAAGTCCTCCAAAAAGAAAGTAAATCC...CTGACTGCTGTTCCCATTTGAGTATGGCGTTTGTTGTTGGTTTTTGTTTTTGGT
39% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 2 transcripts:
ENSMUST00000017694.7
ENSMUST00000108239.7
CDS TCA 90 bp AAGTTTCTTCTGACTTTTCTCTGGTTCTCTTATAGAAGTTGGACTTaGGTCTATTACTATTACAGAGTCATCTATCTCTGGCGACTTCTC +
Preference number: 5 (lower is better)
Translates to: KFLLTFLWFSYRSWT*VYYYYRVIYLWRLL
Trigger: GAGAAGTCGCCAGAGATAGATGACTCTGTAATAGTAATAGACTCAAGTCCAACTTCTATAAGAGAACCAGAGAAAAGTCAGAAGAAACTT
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000017694.7
ENSMUST00000108239.7
CDS-3UTR CAA 90 bp ATAACTGTTTTCCATTGTGTAACTTTAGAGACTGCCTATTTACAGTGGCACAGCCAACTATGTAACTTTTaGACAGCTAACTCATTGCCT +
Preference number: 5 (lower is better)
Translates to: ITVFHCVTLETAYLQWHSQLCNF*TANSLP
Trigger: AGGCAATGAGTTAGCTGTCAAAAAGTTACATAGTTG...GCTGTGCCACTGTAAATAGGCAGTCTCTAAAGTTACACAATGGAAAACAGTTAT
38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000017694.7
ENSMUST00000108239.7
CDS GCA 72 bp GCATGGCTCAATCTCGTAGTCCTTCACAGGAAGGGGTaGTGCAGCCGCCGCCATGCTCAGGACCCCCACCAT +
Preference number: 6 (lower is better)
Translates to: AWLNLVVLHRKG*CSRRHAQDPHH
Trigger: ATGGTGGGGGTCCTGAGCATGGCGGCGGCTGCAGCACCCCTTCCTGTGAAGGACTACGAGATTGAGCCATGC
62% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000017694.7
ENSMUST00000108239.7
CDS GCA 72 bp TGGGGAGGCAATGTTCTTGAGTCCAAACAAAGCCTCTaGACAGCCAGTGTCACACCTGGGGAGGGCCACACG +
Preference number: 6 (lower is better)
Translates to: WGGNVLESKQSL*TASVTPGEGHT
Trigger: CGTGTGGCCCTCCCCAGGTGTGACACTGGCTGTGCAGAGGCTTTGTTTGGACTCAAGAACATTGCCTCCCCA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000017694.7
ENSMUST00000108239.7
CDS CCA 72 bp CCCCATGCTTGCTGGTGCACTGGCCTGTGTAGTCACTaGGAAGCCATAAGCACCCCTTACATCTGGAACCAC +
Preference number: 6 (lower is better)
Translates to: PHACWCTGLCSH*EAISTPYIWNH
Trigger: GTGGTTCCAGATGTAAGGGGTGCTTATGGCTTCCCAGTGACTACACAGGCCAGTGCACCAGCAAGCATGGGG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000017694.7
ENSMUST00000108239.7
CDS TCA 72 bp CGCAGCTTCCCGACAATTCGCCTTCAGAACCACTTTTaGCTGCTTCACCTGGCCCAGAAGGAACACAGGCTG +
Preference number: 6 (lower is better)
Translates to: RSFPTIRLQNHF*LLHLAQKEHRL
Trigger: CAGCCTGTGTTCCTTCTGGGCCAGGTGAAGCAGTCAAAAGTGGTTCTGAAGGCGAATTGTCGGGAAGCTGCG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000017694.7
ENSMUST00000108239.7
CDS GCA 72 bp GCTTCCCGACAATTCGCCTTCAGAACCACTTTTGACTaGTTCACCTGGCCCAGAAGGAACACAGGCTGGAAC +
Preference number: 6 (lower is better)
Translates to: ASRQFAFRTTFD*FTWPRRNTGWN
Trigger: GTTCCAGCCTGTGTTCCTTCTGGGCCAGGTGAAGCAGTCAAAAGTGGTTCTGAAGGCGAATTGTCGGGAAGC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000017694.7
ENSMUST00000108239.7
CDS CCA 72 bp CAATTCGCCTTCAGAACCACTTTTGACTGCTTCACCTaGCCCAGAAGGAACACAGGCTGGAACTGCAGGGTC +
Preference number: 6 (lower is better)
Translates to: QFAFRTTFDCFT*PRRNTGWNCRV
Trigger: GACCCTGCAGTTCCAGCCTGTGTTCCTTCTGGGCCAGGTGAAGCAGTCAAAAGTGGTTCTGAAGGCGAATTG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000017694.7
ENSMUST00000108239.7
CDS CCA 72 bp GGCGTGCTGCAACTTCTCAGAGATCTCCTGATTGGTTaGCGTGTAGAGACATACTCCAGGCTACTTCCAGGC +
Preference number: 6 (lower is better)
Translates to: GVLQLLRDLLIG*RVETYSRLLPG
Trigger: GCCTGGAAGTAGCCTGGAGTATGTCTCTACACGCCAACCAATCAGGAGATCTCTGAGAAGTTGCAGCACGCC
54% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000017694.7
ENSMUST00000108239.7
CDS CAA 72 bp CCTGAGCATCCTCAGACTCAGTACCTCCCAGAGCATTaGTTGCAGGCGTGCTGCAACTTCTCAGAGATCTCC +
Preference number: 6 (lower is better)
Translates to: PEHPQTQYLPEH*LQACCNFSEIS
Trigger: GGAGATCTCTGAGAAGTTGCAGCACGCCTGCAACAAATGCTCTGGGAGGTACTGAGTCTGAGGATGCTCAGG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000017694.7
ENSMUST00000108239.7
CDS CCA 72 bp TTGTGCAAGAACAGTAACTGTCTTGAGGTGCAGCTGTaGCGATGGTTCGCAGCTTCCCGACAATTCGCCTTC +
Preference number: 6 (lower is better)
Translates to: LCKNSNCLEVQL*RWFAASRQFAF
Trigger: GAAGGCGAATTGTCGGGAAGCTGCGAACCATCGCCACAGCTGCACCTCAAGACAGTTACTGTTCTTGCACAA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000017694.7
ENSMUST00000108239.7
CDS CCA 72 bp TGCAGGCGTGCTGCAACTTCTCAGAGATCTCCTGATTaGTTGGCGTGTAGAGACATACTCCAGGCTACTTCC +
Preference number: 6 (lower is better)
Translates to: CRRAATSQRSPD*LACRDILQATS
Trigger: GGAAGTAGCCTGGAGTATGTCTCTACACGCCAACCAATCAGGAGATCTCTGAGAAGTTGCAGCACGCCTGCA
53% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000017694.7
ENSMUST00000108239.7
CDS CAA 72 bp AGGCGTGCTGCAACTTCTCAGAGATCTCCTGATTGGTaGGCGTGTAGAGACATACTCCAGGCTACTTCCAGG +
Preference number: 6 (lower is better)
Translates to: RRAATSQRSPDW*ACRDILQATSR
Trigger: CCTGGAAGTAGCCTGGAGTATGTCTCTACACGCCAACCAATCAGGAGATCTCTGAGAAGTTGCAGCACGCCT
53% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000017694.7
ENSMUST00000108239.7
CDS GCA 72 bp TCCATTTTTGAGCGTGTCTGGCGGTGGCTGCCTAAATaGTCTCATGAACTGCTGTCTTTCCTCCATGCTGCA +
Preference number: 6 (lower is better)
Translates to: SIFERVWRWLPK*SHELLSFLHAA
Trigger: TGCAGCATGGAGGAAAGACAGCAGTTCATGAGAGCATTTAGGCAGCCACCGCCAGACACGCTCAAAAATGGA
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000017694.7
ENSMUST00000108239.7
CDS GCA 72 bp AGCATCCTCAGACTCAGTACCTCCCAGAGCATTTGTTaGAGGCGTGCTGCAACTTCTCAGAGATCTCCTGAT +
Preference number: 6 (lower is better)
Translates to: SILRLSTSQSIC*RRAATSQRSPD
Trigger: ATCAGGAGATCTCTGAGAAGTTGCAGCACGCCTGCAACAAATGCTCTGGGAGGTACTGAGTCTGAGGATGCT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000017694.7
ENSMUST00000108239.7
CDS TCA 72 bp ATGAAAGTAAGTCCTGGGATGGGGAGGCAATGTTCTTaGGTCCAAACAAAGCCTCTGCACAGCCAGTGTCAC +
Preference number: 6 (lower is better)
Translates to: MKVSPGMGRQCS*VQTKPLHSQCH
Trigger: GTGACACTGGCTGTGCAGAGGCTTTGTTTGGACTCAAGAACATTGCCTCCCCATCCCAGGACTTACTTTCAT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000017694.7
ENSMUST00000108239.7
CDS GCA 72 bp TTTCCCTTTCTTCTTAGGGGGAGTGGGGTGAACTTGTaGAAGAACAGTAACTGTCTTGAGGTGCAGCTGTGG +
Preference number: 6 (lower is better)
Translates to: FPFLLRGSGVNL*KNSNCLEVQLW
Trigger: CCACAGCTGCACCTCAAGACAGTTACTGTTCTTGCACAAGTTCACCCCACTCCCCCTAAGAAGAAAGGGAAA
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000017694.7
ENSMUST00000108239.7
CDS CCA 72 bp CTCCAGAGGTTTCTTGAATCCATTTTTGAGCGTGTCTaGCGGTGGCTGCCTAAATGCTCTCATGAACTGCTG +
Preference number: 6 (lower is better)
Translates to: LQRFLESIFERV*RWLPKCSHELL
Trigger: CAGCAGTTCATGAGAGCATTTAGGCAGCCACCGCCAGACACGCTCAAAAATGGATTCAAGAAACCTCTGGAG
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000017694.7
ENSMUST00000108239.7
CDS CAA 72 bp TCCTCAGCTAGGGAAGGTTTAGTCAGCTTGCTGTCTTaGCCACCATCCTCAGGCAGACTAAGTTCATCTGCT +
Preference number: 6 (lower is better)
Translates to: SSAREGLVSLLS*PPSSGRLSSSA
Trigger: AGCAGATGAACTTAGTCTGCCTGAGGATGGTGGCAAAGACAGCAAGCTGACTAAACCTTCCCTAGCTGAGGA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000017694.7
ENSMUST00000108239.7
CDS CAA 72 bp GAGTCGTTTTCCTCAGCTAGGGAAGGTTTAGTCAGCTaGCTGTCTTTGCCACCATCCTCAGGCAGACTAAGT +
Preference number: 6 (lower is better)
Translates to: ESFSSAREGLVS*LSLPPSSGRLS
Trigger: ACTTAGTCTGCCTGAGGATGGTGGCAAAGACAGCAAGCTGACTAAACCTTCCCTAGCTGAGGAAAACGACTC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000017694.7
ENSMUST00000108239.7
CDS GCA 72 bp TTCTTGAATCCATTTTTGAGCGTGTCTGGCGGTGGCTaGCTAAATGCTCTCATGAACTGCTGTCTTTCCTCC +
Preference number: 6 (lower is better)
Translates to: FLNPFLSVSGGG*LNALMNCCLSS
Trigger: GGAGGAAAGACAGCAGTTCATGAGAGCATTTAGGCAGCCACCGCCAGACACGCTCAAAAATGGATTCAAGAA
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000017694.7
ENSMUST00000108239.7
CDS CAA 72 bp TTTTCACTTGGGTCTTTCTGCTTCTCCAGAGGTTTCTaGAATCCATTTTTGAGCGTGTCTGGCGGTGGCTGC +
Preference number: 6 (lower is better)
Translates to: FSLGSFCFSRGF*NPFLSVSGGGC
Trigger: GCAGCCACCGCCAGACACGCTCAAAAATGGATTCAAGAAACCTCTGGAGAAGCAGAAAGACCCAAGTGAAAA
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000017694.7
ENSMUST00000108239.7
CDS CAA 90 bp TGGACAGATTTTTCACTTGGGTCTTTCTGCTTCTCCAGAGGTTTCTaGAATCCATTTTTGAGCGTGTCTGGCGGTGGCTGCCTAAATGCT +
Preference number: 6 (lower is better)
Translates to: WTDFSLGSFCFSRGF*NPFLSVSGGGCLNA
Trigger: AGCATTTAGGCAGCCACCGCCAGACACGCTCAAAAATGGATTCAAGAAACCTCTGGAGAAGCAGAAAGACCCAAGTGAAAAATCTGTCCA
47% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000017694.7
ENSMUST00000108239.7
CDS CAA 90 bp CCACTGTTCTGTGTCTTAATCTCTGGATTGCTGTCTCTTCTTATGTaGTCTTCTACAGACAAGGAGGGTGCAGGAGATAGGCTAGGCAGT +
Preference number: 6 (lower is better)
Translates to: PLFCVLISGLLSLLM*SSTDKEGAGDRLGS
Trigger: ACTGCCTAGCCTATCTCCTGCACCCTCCTTGTCTGTAGAAGACAACATAAGAAGAGACAGCAATCCAGAGATTAAGACACAGAACAGTGG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000017694.7
ENSMUST00000108239.7
CDS GCA 72 bp CCTCCACATGTTCCTTGTAAAGGGAAACAGAAGCACTaGTTTCCACACAATCACTTAAACCACCGTCCTCCT +
Preference number: 6 (lower is better)
Translates to: PPHVPCKGKQKH*FPHNHLNHRPP
Trigger: AGGAGGACGGTGGTTTAAGTGATTGTGTGGAAAGCAGTGCTTCTGTTTCCCTTTACAAGGAACATGTGGAGG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000017694.7
ENSMUST00000108239.7
CDS CCA 72 bp AGGTTTCTTGAATCCATTTTTGAGCGTGTCTGGCGGTaGCTGCCTAAATGCTCTCATGAACTGCTGTCTTTC +
Preference number: 6 (lower is better)
Translates to: RFLESIFERVWR*LPKCSHELLSF
Trigger: GAAAGACAGCAGTTCATGAGAGCATTTAGGCAGCCACCGCCAGACACGCTCAAAAATGGATTCAAGAAACCT
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000017694.7
ENSMUST00000108239.7
CDS CCA 72 bp TCTAGATTAGCTGCTGATTGGCGGAAGCATGCATCATaGCGCCTTTGTGAAACACAGACTGTGAGTTCATTG +
Preference number: 6 (lower is better)
Translates to: SRLAADWRKHAS*RLCETQTVSSL
Trigger: CAATGAACTCACAGTCTGTGTTTCACAAAGGCGCCATGATGCATGCTTCCGCCAATCAGCAGCTAATCTAGA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000017694.7
ENSMUST00000108239.7
CDS CAA 90 bp CGACTAGAAAACACACTTTTAATAACTGCCATCCTCTTGTCAGCATaGTCTAGATTAGCTGCTGATTGGCGGAAGCATGCATCATGGCGC +
Preference number: 6 (lower is better)
Translates to: RLENTLLITAILLSA*SRLAADWRKHASWR
Trigger: GCGCCATGATGCATGCTTCCGCCAATCAGCAGCTAATCTAGACAATGCTGACAAGAGGATGGCAGTTATTAAAAGTGTGTTTTCTAGTCG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000017694.7
ENSMUST00000108239.7
CDS TCA 72 bp AGCATGCATCATGGCGCCTTTGTGAAACACAGACTGTaGGTTCATTGGTTGGGTCTCTTTCTAATTGCTTGC +
Preference number: 6 (lower is better)
Translates to: SMHHGAFVKHRL*VHWLGLFLIAC
Trigger: GCAAGCAATTAGAAAGAGACCCAACCAATGAACTCACAGTCTGTGTTTCACAAAGGCGCCATGATGCATGCT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000017694.7
ENSMUST00000108239.7
CDS CCA 72 bp ACAGTCTTTGCTGTTGCCAACAAGCAATGGGGGAGATaGCTTTATTTTGTACGCCTTTGTCGATTGTGGCTT +
Preference number: 6 (lower is better)
Translates to: TVFAVANKQWGR*LYFVRLCRLWL
Trigger: AAGCCACAATCGACAAAGGCGTACAAAATAAAGCCATCTCCCCCATTGCTTGTTGGCAACAGCAAAGACTGT
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000017694.7
ENSMUST00000108239.7
CDS CCA 72 bp ATTAGATTTCCTCTTCTGAACTGGCTGCTCATTTTCTaGGTCAGAGAGACTATTCTCCAGCTCAGGCTGCTT +
Preference number: 6 (lower is better)
Translates to: IRFPLLNWLLIF*VRETILQLRLL
Trigger: AAGCAGCCTGAGCTGGAGAATAGTCTCTCTGACCCAGAAAATGAGCAGCCAGTTCAGAAGAGGAAATCTAAT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000017694.7
ENSMUST00000108239.7
CDS CCA 72 bp ACAAGCATACACGGCAGCAGTTTTTCCCACTCCCGTTaGTCCTGTTATAAGAACAGTGTTGCAAAGACGATT +
Preference number: 6 (lower is better)
Translates to: TSIHGSSFSHSR*SCYKNSVAKTI
Trigger: AATCGTCTTTGCAACACTGTTCTTATAACAGGACCAACGGGAGTGGGAAAAACTGCTGCCGTGTATGCTTGT
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000017694.7
ENSMUST00000108239.7
CDS TCA 72 bp ATTGTACTCTCCTTTAAATCAGCTCTTTTGGTTGCATaGGTCCTGGAGTCGTTTTCCTCAGCTAGGGAAGGT +
Preference number: 6 (lower is better)
Translates to: IVLSFKSALLVA*VLESFSSAREG
Trigger: ACCTTCCCTAGCTGAGGAAAACGACTCCAGGACTCATGCAACCAAAAGAGCTGATTTAAAGGAGAGTACAAT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000017694.7
ENSMUST00000108239.7
CDS TCA 72 bp CTTCAGCTGAGACAGGATTTGCCTACCACTTCGCTGTaGAGAGGCATTCACTTCAAATATCTTAAACCCAAG +
Preference number: 6 (lower is better)
Translates to: LQLRQDLPTTSL*RGIHFKYLKPK
Trigger: CTTGGGTTTAAGATATTTGAAGTGAATGCCTCTTCACAGCGAAGTGGTAGGCAAATCCTGTCTCAGCTGAAG
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000017694.7
ENSMUST00000108239.7
CDS GCA 72 bp TGGAACTGCAGGGTCAGGTATCTCTTCCACTTTAGCTaGCTTGTGACTTTTTACAAATTCCTCATAGGAGAC +
Preference number: 6 (lower is better)
Translates to: WNCRVRYLFHFS*LVTFYKFLIGD
Trigger: GTCTCCTATGAGGAATTTGTAAAAAGTCACAAGGCAGCTAAAGTGGAAGAGATACCTGACCCTGCAGTTCCA
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000017694.7
ENSMUST00000108239.7
CDS CAA 72 bp TTTCCCACTCCCGTTGGTCCTGTTATAAGAACAGTGTaGCAAAGACGATTCTCTTCATCATCTGAACTGCCT +
Preference number: 6 (lower is better)
Translates to: FPTPVGPVIRTV*QRRFSSSSELP
Trigger: AGGCAGTTCAGATGATGAAGAGAATCGTCTTTGCAACACTGTTCTTATAACAGGACCAACGGGAGTGGGAAA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000017694.7
ENSMUST00000108239.7
CDS CAA 72 bp TGTGTCTTAATCTCTGGATTGCTGTCTCTTCTTATGTaGTCTTCTACAGACAAGGAGGGTGCAGGAGATAGG +
Preference number: 6 (lower is better)
Translates to: CVLISGLLSLLM*SSTDKEGAGDR
Trigger: CCTATCTCCTGCACCCTCCTTGTCTGTAGAAGACAACATAAGAAGAGACAGCAATCCAGAGATTAAGACACA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000017694.7
ENSMUST00000108239.7
CDS TCA 72 bp ATCAAAAATGACATCAACCTCCTCAAAGAGAATGAGTaGTGTCGCCTTCTTCCTGTTGGATTCTTCAGCTCC +
Preference number: 6 (lower is better)
Translates to: IKNDINLLKENE*CRLLPVGFFSS
Trigger: GGAGCTGAAGAATCCAACAGGAAGAAGGCGACATCACTCATTCTCTTTGAGGAGGTTGATGTCATTTTTGAT
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000017694.7
ENSMUST00000108239.7
CDS TCA 72 bp TTACATCTGGAACCACATGAACTGGCAGTGGCAGGATaGCCTCAAGGTTACTATGTAGCAGATCGATATTTT +
Preference number: 6 (lower is better)
Translates to: LHLEPHELAVAG*PQGYYVADRYF
Trigger: AAAATATCGATCTGCTACATAGTAACCTTGAGGTCATCCTGCCACTGCCAGTTCATGTGGTTCCAGATGTAA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000017694.7
ENSMUST00000108239.7
CDS GCA 72 bp AGAATACTTCCAATGGCGTCTTACAGTCTTTGCTGTTaGCAACAAGCAATGGGGGAGATGGCTTTATTTTGT +
Preference number: 6 (lower is better)
Translates to: RILPMASYSLCC*QQAMGEMALFC
Trigger: ACAAAATAAAGCCATCTCCCCCATTGCTTGTTGGCAACAGCAAAGACTGTAAGACGCCATTGGAAGTATTCT
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000017694.7
ENSMUST00000108239.7
CDS GCA 72 bp TATTTGAGAATACTTCCAATGGCGTCTTACAGTCTTTaGTGTTGCCAACAAGCAATGGGGGAGATGGCTTTA +
Preference number: 6 (lower is better)
Translates to: YLRILPMASYSL*CCQQAMGEMAL
Trigger: TAAAGCCATCTCCCCCATTGCTTGTTGGCAACAGCAAAGACTGTAAGACGCCATTGGAAGTATTCTCAAATA
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000017694.7
ENSMUST00000108239.7
CDS CCA 72 bp AGAACTGCTATCTCCTTCATGGACAGATTTTTCACTTaGGTCTTTCTGCTTCTCCAGAGGTTTCTTGAATCC +
Preference number: 6 (lower is better)
Translates to: RTAISFMDRFFT*VFLLLQRFLES
Trigger: GGATTCAAGAAACCTCTGGAGAAGCAGAAAGACCCAAGTGAAAAATCTGTCCATGAAGGAGATAGCAGTTCT
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000017694.7
ENSMUST00000108239.7
CDS CCA 72 bp GTGGGGCTTGAAACCACTGTTCTGTGTCTTAATCTCTaGATTGCTGTCTCTTCTTATGTTGTCTTCTACAGA +
Preference number: 6 (lower is better)
Translates to: VGLETTVLCLNL*IAVSSYVVFYR
Trigger: TCTGTAGAAGACAACATAAGAAGAGACAGCAATCCAGAGATTAAGACACAGAACAGTGGTTTCAAGCCCCAC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000017694.7
ENSMUST00000108239.7
CDS CAA 72 bp TCATGGCGCCTTTGTGAAACACAGACTGTGAGTTCATaGGTTGGGTCTCTTTCTAATTGCTTGCATGAATTC +
Preference number: 6 (lower is better)
Translates to: SWRLCETQTVSS*VGSLSNCLHEF
Trigger: GAATTCATGCAAGCAATTAGAAAGAGACCCAACCAATGAACTCACAGTCTGTGTTTCACAAAGGCGCCATGA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000017694.7
ENSMUST00000108239.7
CDS CAA 72 bp AACACACTTTTAATAACTGCCATCCTCTTGTCAGCATaGTCTAGATTAGCTGCTGATTGGCGGAAGCATGCA +
Preference number: 6 (lower is better)
Translates to: NTLLITAILLSA*SRLAADWRKHA
Trigger: TGCATGCTTCCGCCAATCAGCAGCTAATCTAGACAATGCTGACAAGAGGATGGCAGTTATTAAAAGTGTGTT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000017694.7
ENSMUST00000108239.7
CDS TCA 72 bp AGATCGATATTTTGCACGTGGAATTCGGTGAGAACCTaGATGAGTTTCTGCCATTCTTCCTTTGTTGTGATC +
Preference number: 6 (lower is better)
Translates to: RSIFCTWNSVRT*MSFCHSSFVVI
Trigger: GATCACAACAAAGGAAGAATGGCAGAAACTCATTCAGGTTCTCACCGAATTCCACGTGCAAAATATCGATCT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000017694.7
ENSMUST00000108239.7
CDS GCA 72 bp ATCACTTGTCGTGAGAATTACTGGTCGTTTAGTTGTTaGCATGAAGGTTTTGACTGCATTCAAAAACCCAGC +
Preference number: 6 (lower is better)
Translates to: ITCRENYWSFSC*HEGFDCIQKPS
Trigger: GCTGGGTTTTTGAATGCAGTCAAAACCTTCATGGCAACAACTAAACGACCAGTAATTCTCACGACAAGTGAT
42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000017694.7
ENSMUST00000108239.7
CDS GCA 72 bp CAGACTGTGAGTTCATTGGTTGGGTCTCTTTCTAATTaGTTGCATGAATTCAAGGACTCCAGTGCTTTTGAA +
Preference number: 6 (lower is better)
Translates to: QTVSSLVGSLSN*LHEFKDSSAFE
Trigger: TTCAAAAGCACTGGAGTCCTTGAATTCATGCAAGCAATTAGAAAGAGACCCAACCAATGAACTCACAGTCTG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000017694.7
ENSMUST00000108239.7
CDS CCA 72 bp ATGTTCTCCATGAACTCACTGAGAGAATTTAAACAGTaGGAAACGAGCATGCAACACTTCTTCTCTGCTAGT +
Preference number: 6 (lower is better)
Translates to: MFSMNSLREFKQ*ETSMQHFFSAS
Trigger: ACTAGCAGAGAAGAAGTGTTGCATGCTCGTTTCCCACTGTTTAAATTCTCTCAGTGAGTTCATGGAGAACAT
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000017694.7
ENSMUST00000108239.7
CDS CAA 72 bp TCACTGCATTGTACACATCTAATGCAGCAGCTTTCTTaGCAATCTGACGTTTCAGTAAATCTGGCAAACCAC +
Preference number: 6 (lower is better)
Translates to: SLHCTHLMQQLS*QSDVSVNLANH
Trigger: GTGGTTTGCCAGATTTACTGAAACGTCAGATTGCAAAGAAAGCTGCTGCATTAGATGTGTACAATGCAGTGA
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000017694.7
ENSMUST00000108239.7
CDS CAA 72 bp GTTCCGAAGAGTTGGCAGGTAGTCAATTATACTAGCTaGTTTATTACCCAGGGTCAGAAAAGAACGACTAGA +
Preference number: 6 (lower is better)
Translates to: VPKSWQVVNYTS*FITQGQKRTTR
Trigger: TCTAGTCGTTCTTTTCTGACCCTGGGTAATAAACAAGCTAGTATAATTGACTACCTGCCAACTCTTCGGAAC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000017694.7
ENSMUST00000108239.7
CDS CAA 90 bp CCGACAAATGTTCCGAAGAGTTGGCAGGTAGTCAATTATACTAGCTaGTTTATTACCCAGGGTCAGAAAAGAACGACTAGAAAACACACT +
Preference number: 6 (lower is better)
Translates to: PTNVPKSWQVVNYTS*FITQGQKRTTRKHT
Trigger: AGTGTGTTTTCTAGTCGTTCTTTTCTGACCCTGGGTAATAAACAAGCTAGTATAATTGACTACCTGCCAACTCTTCGGAACATTTGTCGG
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000017694.7
ENSMUST00000108239.7
CDS CAA 90 bp ACGCTTCCTCTTCCTCAGTATCCTGTCATCACTTTTTGTGGTGCATaGTTTAGGATTTACTTTCTTTTTGGAGGACTTAGTATTTGGCTG +
Preference number: 6 (lower is better)
Translates to: TLPLPQYPVITFCGA*FRIYFLFGGLSIWL
Trigger: CAGCCAAATACTAAGTCCTCCAAAAAGAAAGTAAATCCTAAACAATGCACCACAAAAAGTGATGACAGGATACTGAGGAAGAGGAAGCGT
40% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000017694.7
ENSMUST00000108239.7
CDS CAA 90 bp GAAACACAGACTGTGAGTTCATTGGTTGGGTCTCTTTCTAATTGCTaGCATGAATTCAAGGACTCCAGTGCTTTTGAAATGGTAGAAGAA +
Preference number: 6 (lower is better)
Translates to: ETQTVSSLVGSLSNC*HEFKDSSAFEMVEE
Trigger: TTCTTCTACCATTTCAAAAGCACTGGAGTCCTTGAATTCATGCAAGCAATTAGAAAGAGACCCAACCAATGAACTCACAGTCTGTGTTTC
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000017694.7
ENSMUST00000108239.7
CDS TCA 72 bp TGTAACCATATCCCTGGTTGGTGTGCTGCTGCTTCTTaGCTTATTTCTATTACACAGAGACATTTGTACAGA +
Preference number: 6 (lower is better)
Translates to: CNHIPGWCAAAS*LISITQRHLYR
Trigger: TCTGTACAAATGTCTCTGTGTAATAGAAATAAGTCAAGAAGCAGCAGCACACCAACCAGGGATATGGTTACA
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000017694.7
ENSMUST00000108239.7
CDS TCA 72 bp TGCCATAACCAATATTCATCATCCTTCTGTTGTACATaGACAACCCTCTGGAAACTTGTACTCACTGCATTG +
Preference number: 6 (lower is better)
Translates to: CHNQYSSSFCCT*TTLWKLVLTAL
Trigger: CAATGCAGTGAGTACAAGTTTCCAGAGGGTTGTTCATGTACAACAGAAGGATGATGAATATTGGTTATGGCA
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000017694.7
ENSMUST00000108239.7
CDS TCA 72 bp AATCTCTGGAAGGATCTAGATTTGTACAAGAAGAGCTaGTTCTTTCGTCAAGGTCTTTTGATCTCCCCTTCA +
Preference number: 6 (lower is better)
Translates to: NLWKDLDLYKKS*FFRQGLLISPS
Trigger: TGAAGGGGAGATCAAAAGACCTTGACGAAAGAATCAGCTCTTCTTGTACAAATCTAGATCCTTCCAGAGATT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000017694.7
ENSMUST00000108239.7
CDS CCA 72 bp GGATTTACTTTCTTTTTGGAGGACTTAGTATTTGGCTaGTTTCTGCTGTCTTCAATACTTTCTGCGAGAACC +
Preference number: 6 (lower is better)
Translates to: GFTFFLEDLVFG*FLLSSILSART
Trigger: GGTTCTCGCAGAAAGTATTGAAGACAGCAGAAACCAGCCAAATACTAAGTCCTCCAAAAAGAAAGTAAATCC
40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000017694.7
ENSMUST00000108239.7
CDS CAA 72 bp GGTGATAAATATTTGGTGATTGTTTCGCAGGAAGAGTaGTCATCATCTTTTCTCCGCTTTTTGCATGGCTCA +
Preference number: 6 (lower is better)
Translates to: GDKYLVIVSQEE*SSSFLRFLHGS
Trigger: TGAGCCATGCAAAAAGCGGAGAAAAGATGATGACAACTCTTCCTGCGAAACAATCACCAAATATTTATCACC
40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000017694.7
ENSMUST00000108239.7
CDS CAA 72 bp TCCTCAAAGAGAATGAGTGATGTCGCCTTCTTCCTGTaGGATTCTTCAGCTCCAACATCTTTAATATGTGAA +
Preference number: 6 (lower is better)
Translates to: SSKRMSDVAFFL*DSSAPTSLICE
Trigger: TTCACATATTAAAGATGTTGGAGCTGAAGAATCCAACAGGAAGAAGGCGACATCACTCATTCTCTTTGAGGA
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000017694.7
ENSMUST00000108239.7
CDS CAA 90 bp TTAAATTCTCTATTTGAGAATACTTCCAATGGCGTCTTACAGTCTTaGCTGTTGCCAACAAGCAATGGGGGAGATGGCTTTATTTTGTAC +
Preference number: 6 (lower is better)
Translates to: LNSLFENTSNGVLQS*LLPTSNGGDGFILY
Trigger: GTACAAAATAAAGCCATCTCCCCCATTGCTTGTTGGCAACAGCAAAGACTGTAAGACGCCATTGGAAGTATTCTCAAATAGAGAATTTAA
39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000017694.7
ENSMUST00000108239.7
CDS CAA 90 bp AACTTGTACTCACTGCATTGTACACATCTAATGCAGCAGCTTTCTTaGCAATCTGACGTTTCAGTAAATCTGGCAAACCACTCATTAGAA +
Preference number: 6 (lower is better)
Translates to: NLYSLHCTHLMQQLS*QSDVSVNLANHSLE
Trigger: TTCTAATGAGTGGTTTGCCAGATTTACTGAAACGTCAGATTGCAAAGAAAGCTGCTGCATTAGATGTGTACAATGCAGTGAGTACAAGTT
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000017694.7
ENSMUST00000108239.7
CDS CAA 90 bp AATATTCATCATCCTTCTGTTGTACATGAACAACCCTCTGGAAACTaGTACTCACTGCATTGTACACATCTAATGCAGCAGCTTTCTTTG +
Preference number: 6 (lower is better)
Translates to: NIHHPSVVHEQPSGN*YSLHCTHLMQQLSL
Trigger: CAAAGAAAGCTGCTGCATTAGATGTGTACAATGCAGTGAGTACAAGTTTCCAGAGGGTTGTTCATGTACAACAGAAGGATGATGAATATT
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000017694.7
ENSMUST00000108239.7
CDS CAA 90 bp CTTGTCGTGAGAATTACTGGTCGTTTAGTTGTTGCCATGAAGGTTTaGACTGCATTCAAAAACCCAGCATCTTCATCAAAAATGACATCA +
Preference number: 6 (lower is better)
Translates to: LVVRITGRLVVAMKV*TAFKNPASSSKMTS
Trigger: TGATGTCATTTTTGATGAAGATGCTGGGTTTTTGAATGCAGTCAAAACCTTCATGGCAACAACTAAACGACCAGTAATTCTCACGACAAG
39% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000017694.7
ENSMUST00000108239.7
CDS TCA 72 bp TTGTACACATCTAATGCAGCAGCTTTCTTTGCAATCTaGCGTTTCAGTAAATCTGGCAAACCACTCATTAGA +
Preference number: 6 (lower is better)
Translates to: LYTSNAAAFFAI*RFSKSGKPLIR
Trigger: TCTAATGAGTGGTTTGCCAGATTTACTGAAACGTCAGATTGCAAAGAAAGCTGCTGCATTAGATGTGTACAA
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000017694.7
ENSMUST00000108239.7
CDS TCA 72 bp GCCAATGTTGTAGTTGTTAAAGAAACAGGGTTTTTGTaGGTTTACACCTTGCTTATCTACTTGATGGGACTG +
Preference number: 6 (lower is better)
Translates to: ANVVVVKETGFL*VYTLLIYLMGL
Trigger: CAGTCCCATCAAGTAGATAAGCAAGGTGTAAACTCACAAAAACCCTGTTTCTTTAACAACTACAACATTGGC
39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000017694.7
ENSMUST00000108239.7
CDS CAA 72 bp AGAATTACTGGTCGTTTAGTTGTTGCCATGAAGGTTTaGACTGCATTCAAAAACCCAGCATCTTCATCAAAA +
Preference number: 6 (lower is better)
Translates to: RITGRLVVAMKV*TAFKNPASSSK
Trigger: TTTTGATGAAGATGCTGGGTTTTTGAATGCAGTCAAAACCTTCATGGCAACAACTAAACGACCAGTAATTCT
38% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000017694.7
ENSMUST00000108239.7
CDS CAA 90 bp CTGTCATCACTTTTTGTGGTGCATTGTTTAGGATTTACTTTCTTTTaGGAGGACTTAGTATTTGGCTGGTTTCTGCTGTCTTCAATACTT +
Preference number: 6 (lower is better)
Translates to: LSSLFVVHCLGFTFF*EDLVFGWFLLSSIL
Trigger: AAGTATTGAAGACAGCAGAAACCAGCCAAATACTAAGTCCTCCAAAAAGAAAGTAAATCCTAAACAATGCACCACAAAAAGTGATGACAG
37% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000017694.7
ENSMUST00000108239.7
CDS GCA 72 bp ATTTCTATTACACAGAGACATTTGTACAGAGTCATGTaGCGTATCCTCACAAACAAGATTTTCACTGTTAAG +
Preference number: 6 (lower is better)
Translates to: ISITQRHLYRVM*RILTNKIFTVK
Trigger: CTTAACAGTGAAAATCTTGTTTGTGAGGATACGGCACATGACTCTGTACAAATGTCTCTGTGTAATAGAAAT
36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000017694.7
ENSMUST00000108239.7