Pregenerated sensors for ATAD3A (Mus musculus)
Ensembl gene IDs: ENSMUSG00000029036Ensembl transcript IDs: ENSMUST00000030903.12, ENSMUST00000175679.8, ENSMUST00000176043.2, ENSMUST00000184131.2, ENSMUST00000184913.8
Found 84 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR TCA 90 bp | CAGCACTCAGAGTCAGAGACGAGGAGGTGTGGGAGGCAGAGAAGCTaGCACCTCCAGTATCCCACAACTCCGCAGAGGCATTTGGAGCAA | + |
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Preference number: 1 (lower is better) Translates to: QHSESETRRCGRQRS*HLQYPTTPQRHLEQ Trigger: TTGCTCCAAATGCCTCTGCGGAGTTGTGGGATACTGGAGGTGTCAGCTTCTCTGCCTCCCACACCTCCTCGTCTCTGACTCTGAGTGCTG 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000030903.12 |
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| 3UTR TCA 90 bp | CTCTCTGCTCTGCTCTGGGCTTGTAGACATGTCTCACCAGTGTACTaGGGTAAAGGAAGGCAGTATGCCTCCCTCTGCCAGCACTCAGAG | + |
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Preference number: 1 (lower is better) Translates to: LSALLWACRHVSPVY*GKGRQYASLCQHSE Trigger: CTCTGAGTGCTGGCAGAGGGAGGCATACTGCCTTCCTTTACCTCAGTACACTGGTGAGACATGTCTACAAGCCCAGAGCAGAGCAGAGAG 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000030903.12 |
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| 3UTR GCA 90 bp | TCCATCTCGCGCTCCACAGTGGCTCGCCGTATGGCCTCCTGCTTCTaGACAGACTCCTCTTGTTTCCTTAAATTCTCTTCATTCAGAAGT | + |
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Preference number: 1 (lower is better) Translates to: SISRSTVARRMASCF*TDSSCFLKFSSFRS Trigger: ACTTCTGAATGAAGAGAATTTAAGGAAACAAGAGGAGTCTGTGCAGAAGCAGGAGGCCATACGGCGAGCCACTGTGGAGCGCGAGATGGA 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000184913.8 |
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| 3UTR CCA 90 bp | AGAGAAGCTGACACCTCCAGTATCCCACAACTCCGCAGAGGCATTTaGAGCAATGTTGACCTCTTACAGAGGTCAAAGAAGACAGGAAAG | + |
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Preference number: 1 (lower is better) Translates to: READTSSIPQLRRGI*SNVDLLQRSKKTGK Trigger: CTTTCCTGTCTTCTTTGACCTCTGTAAGAGGTCAACATTGCTCCAAATGCCTCTGCGGAGTTGTGGGATACTGGAGGTGTCAGCTTCTCT 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000030903.12 |
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| 3UTR CCA 90 bp | TCTAGCACCAGATCCACTCTACCGAGTAAAGACTGGGCCAATTCTTaGCACAGATGTGTATATGGTAGGAGTAATGTCCAGGAAGCTGAG | + |
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Preference number: 1 (lower is better) Translates to: SSTRSTLPSKDWANS*HRCVYGRSNVQEAE Trigger: CTCAGCTTCCTGGACATTACTCCTACCATATACACATCTGTGCCAAGAATTGGCCCAGTCTTTACTCGGTAGAGTGGATCTGGTGCTAGA 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000030903.12 |
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| 3UTR-3UTR CCA 90 bp | CCTGATAGACTCCAAGATGGTCTGGCGGTGCTCAGCAGCCTTGAGTCGAATCTGTCTCGCGCTCCACAGTaGCTCGCCGTATGGCCTCCT | + |
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Preference number: 2 (lower is better) Translates to: PDRLQDGLAVLSSLESNLSRAPQ*LAVWPP Trigger: AGGAGGCCATACGGCGAGCCACTGTGGAGCGCGAGA...CAGATTCGACTCAAGGCTGCTGAGCACCGCCAGACCATCTTGGAGTCTATCAGG 59% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000184913.8 |
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| 3UTR-3UTR TCA 90 bp | TTCGATTCTGGATTTAAAAGGCCCGGACTCAGTAGAGGGAAGGCGGTAGTTCTGGGGAGGCAGAGAAGCTaGCACCTCCAGTATCCCACA | + |
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Preference number: 2 (lower is better) Translates to: FDSGFKRPGLSRGKAVVLGRQRS*HLQYPT Trigger: TGTGGGATACTGGAGGTGTCAGCTTCTCTGCCTCCC...CAGAACTACCGCCTTCCCTCTACTGAGTCCGGGCCTTTTAAATCCAGAATCGAA 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000030903.12 |
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| 3UTR-3UTR GCA 90 bp | CTTGGTATTTCTTGTTGCGATGGCAATATCTCGGACCCGTGCCTCCAGGCTAGGAGGTGCCAGCTGTCCTaGATGAGGAAAAGTCACATG | + |
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Preference number: 2 (lower is better) Translates to: LGISCCDGNISDPCLQARRCQLS*MRKSHM Trigger: CATGTGACTTTTCCTCATGCAGGACAGCTGGCACCT...CCTAGCCTGGAGGCACGGGTCCGAGATATTGCCATCGCAACAAGAAATACCAAG 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000184131.2 |
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| 3UTR-3UTR GCA 90 bp | CTGATAGACTCCAAGATGGTCTGGCGGTGCTCAGCAGCCTTGAGTCGAATCTGTATGGCCTCCTGCTTCTaGACAGACTCCTCTTGTTTC | + |
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Preference number: 2 (lower is better) Translates to: LIDSKMVWRCSAALSRICMASCF*TDSSCF Trigger: GAAACAAGAGGAGTCTGTGCAGAAGCAGGAGGCCAT...ACAGATTCGACTCAAGGCTGCTGAGCACCGCCAGACCATCTTGGAGTCTATCAG 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000184913.8 |
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| 3UTR-3UTR GCA 90 bp | CTGATAGACTCCAAGATGGTCTGGCGGTGCTCAGCAGCCTTGAGTCGAATCTGTAGAAGTAGCATTCTTTaGAGAATAGACTCCAACAGC | + |
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Preference number: 2 (lower is better) Translates to: LIDSKMVWRCSAALSRICRSSIL*RIDSNS Trigger: GCTGTTGGAGTCTATTCTGCAAAGAATGCTACTTCT...ACAGATTCGACTCAAGGCTGCTGAGCACCGCCAGACCATCTTGGAGTCTATCAG 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000184913.8 |
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| 3UTR TCA 72 bp | GAGTCAGAGACGAGGAGGTGTGGGAGGCAGAGAAGCTaGCACCTCCAGTATCCCACAACTCCGCAGAGGCAT | + |
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Preference number: 3 (lower is better) Translates to: ESETRRCGRQRS*HLQYPTTPQRH Trigger: ATGCCTCTGCGGAGTTGTGGGATACTGGAGGTGTCAGCTTCTCTGCCTCCCACACCTCCTCGTCTCTGACTC 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000030903.12 |
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| 3UTR GCA 72 bp | AGGAAAGGAGGGAGCAGTGTGGTCATAGAGACTGGCTaGCCCAGTCAGGTGTACAAGGTGTCCAGGTCCAGC | + |
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Preference number: 3 (lower is better) Translates to: RKGGSSVVIETG*PSQVYKVSRSS Trigger: GCTGGACCTGGACACCTTGTACACCTGACTGGGGCAGCCAGTCTCTATGACCACACTGCTCCCTCCTTTCCT 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000030903.12 |
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| 3UTR GCA 72 bp | ATCTCGCGCTCCACAGTGGCTCGCCGTATGGCCTCCTaGTTCTGCACAGACTCCTCTTGTTTCCTTAAATTC | + |
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Preference number: 3 (lower is better) Translates to: ISRSTVARRMAS*FCTDSSCFLKF Trigger: GAATTTAAGGAAACAAGAGGAGTCTGTGCAGAAGCAGGAGGCCATACGGCGAGCCACTGTGGAGCGCGAGAT 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000184913.8 |
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| 3UTR GCA 72 bp | CGCTCCACAGTGGCTCGCCGTATGGCCTCCTGCTTCTaGACAGACTCCTCTTGTTTCCTTAAATTCTCTTCA | + |
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Preference number: 3 (lower is better) Translates to: RSTVARRMASCF*TDSSCFLKFSS Trigger: TGAAGAGAATTTAAGGAAACAAGAGGAGTCTGTGCAGAAGCAGGAGGCCATACGGCGAGCCACTGTGGAGCG 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000184913.8 |
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| 3UTR TCA 72 bp | TATCCCACAACTCCGCAGAGGCATTTGGAGCAATGTTaGCCTCTTACAGAGGTCAAAGAAGACAGGAAAGGA | + |
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Preference number: 3 (lower is better) Translates to: YPTTPQRHLEQC*PLTEVKEDRKG Trigger: TCCTTTCCTGTCTTCTTTGACCTCTGTAAGAGGTCAACATTGCTCCAAATGCCTCTGCGGAGTTGTGGGATA 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000030903.12 |
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| CDS-3UTR TCA 90 bp | TCCAGGAAGCTGAGGGCCCCCTGTGCCTTTAGCCTGGTCCCTGTAGGCCCCAGTCAGTCGCTCGTTTCCTaGGGAAGGCGTCTGCTTCAT | + |
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Preference number: 4 (lower is better) Translates to: SRKLRAPCAFSLVPVGPSQSLVS*GRRLLH Trigger: ATGAAGCAGACGCCTTCCTCAGGAAACGAGCGACTG...ACTGGGGCCTACAGGGACCAGGCTAAAGGCACAGGGGGCCCTCAGCTTCCTGGA 61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000030903.12 |
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| CDS-3UTR TCA 90 bp | TCCAGGAAGCTGAGGGCCCCCTGTGCCTTTAGCCTGGTCCCTGTAGGCCCCAGTTCAGCAGCTGAGGAGTaGAGGATGTGGCGGCTTGTT | + |
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Preference number: 4 (lower is better) Translates to: SRKLRAPCAFSLVPVGPSSAAEE*RMWRLV Trigger: AACAAGCCGCCACATCCTTCACTCCTCAGCTGCTGA...ACTGGGGCCTACAGGGACCAGGCTAAAGGCACAGGGGGCCCTCAGCTTCCTGGA 61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000030903.12 |
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| CDS-3UTR GCA 90 bp | GATAGACTCCAAGATGGTCTGGCGGTGCTCAGCAGCCTTGAGTCGAATCTGTTCGCAGCGGAGGCCCTGTaGCTTCGCCCTTGGGGCCCT | + |
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Preference number: 4 (lower is better) Translates to: DRLQDGLAVLSSLESNLFAAEAL*LRPWGP Trigger: AGGGCCCCAAGGGCGAAGGCACAGGGCCTCCGCTGC...GAACAGATTCGACTCAAGGCTGCTGAGCACCGCCAGACCATCTTGGAGTCTATC 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000176043.2 |
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| CDS-3UTR CCA 90 bp | CAGTATGCCTCCCTCTGCCAGCACTCAGAGTCAGAGACGAGGAGGTGTGGGAGGCCCTCCAATGCATCCTaGGGTCTGCTGACCAGTCGC | + |
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Preference number: 4 (lower is better) Translates to: QYASLCQHSESETRRCGRPSNAS*GLLTSR Trigger: GCGACTGGTCAGCAGACCCCAGGATGCATTGGAGGG...CCTCCCACACCTCCTCGTCTCTGACTCTGAGTGCTGGCAGAGGGAGGCATACTG 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000030903.12 |
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| CDS-3UTR GCA 90 bp | GAAGCTGACACCTCCAGTATCCCACAACTCCGCAGAGGCATTTGGAGCAATGTTGCAGCGGAGGCCCTGTaGCTTCGCCCTTGGGGCCCT | + |
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Preference number: 4 (lower is better) Translates to: EADTSSIPQLRRGIWSNVAAEAL*LRPWGP Trigger: AGGGCCCCAAGGGCGAAGGCACAGGGCCTCCGCTGC...AACATTGCTCCAAATGCCTCTGCGGAGTTGTGGGATACTGGAGGTGTCAGCTTC 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000030903.12 |
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| CDS-3UTR CCA 90 bp | GCAGTGCAAGTTTCTTGGCAAATAGTGTCTTGCCAGTCCCCGGGGGCCCATACATCTCGCGCTCCACAGTaGCTCGCCGTATGGCCTCCT | + |
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Preference number: 4 (lower is better) Translates to: AVQVSWQIVSCQSPGAHTSRAPQ*LAVWPP Trigger: AGGAGGCCATACGGCGAGCCACTGTGGAGCGCGAGA...TGTATGGGCCCCCGGGGACTGGCAAGACACTATTTGCCAAGAAACTTGCACTGC 59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000175679.8 |
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| CDS-3UTR CCA 90 bp | GGCACAGATGTGTATATGGTAGGAGTAATGTCCAGGAAGCTGAGGGCCCCCTGTTCTCGCGCTCCACAGTaGCTCGCCGTATGGCCTCCT | + |
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Preference number: 4 (lower is better) Translates to: GTDVYMVGVMSRKLRAPCSRAPQ*LAVWPP Trigger: AGGAGGCCATACGGCGAGCCACTGTGGAGCGCGAGA...ACAGGGGGCCCTCAGCTTCCTGGACATTACTCCTACCATATACACATCTGTGCC 58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000030903.12 |
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| CDS-3UTR GCA 90 bp | CAGTATGCCTCCCTCTGCCAGCACTCAGAGTCAGAGACGAGGAGGTGTGGGAGGATGGCCTCCTGCTTCTaGACAGACTCCTCTTGTTTC | + |
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Preference number: 4 (lower is better) Translates to: QYASLCQHSESETRRCGRMASCF*TDSSCF Trigger: GAAACAAGAGGAGTCTGTGCAGAAGCAGGAGGCCAT...CCTCCCACACCTCCTCGTCTCTGACTCTGAGTGCTGGCAGAGGGAGGCATACTG 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000030903.12 |
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| CDS-3UTR CCA 90 bp | GTTTCTTGGCAAATAGTGTCTTGCCAGTCCCCGGGGGCCCATACATCAGAACGTCCCTCCAATGCATCCTaGGGTCTGCTGACCAGTCGC | + |
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Preference number: 4 (lower is better) Translates to: VSWQIVSCQSPGAHTSERPSNAS*GLLTSR Trigger: GCGACTGGTCAGCAGACCCCAGGATGCATTGGAGGG...ACGTTCTGATGTATGGGCCCCCGGGGACTGGCAAGACACTATTTGCCAAGAAAC 57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000175679.8 |
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| CDS-3UTR CCA 90 bp | GGCACAGATGTGTATATGGTAGGAGTAATGTCCAGGAAGCTGAGGGCCCCCTGTTCGCTCCTCCCGCTGTaGCAGGGCAAAGCAGACCAT | + |
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Preference number: 4 (lower is better) Translates to: GTDVYMVGVMSRKLRAPCSLLPL*QGKADH Trigger: ATGGTCTGCTTTGCCCTGCCACAGCGGGAGGAGCGA...ACAGGGGGCCCTCAGCTTCCTGGACATTACTCCTACCATATACACATCTGTGCC 57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000030903.12 |
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| CDS-3UTR GCA 90 bp | TCCAGGAAGCTGAGGGCCCCCTGTGCCTTTAGCCTGGTCCCTGTAGGCCCCAGTTCTTCATTCAGAAGTTaGTGTTGTTTCAGCTGGTCC | + |
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Preference number: 4 (lower is better) Translates to: SRKLRAPCAFSLVPVGPSSSFRS*CCFSWS Trigger: GGACCAGCTGAAACAACAGCAACTTCTGAATGAAGA...ACTGGGGCCTACAGGGACCAGGCTAAAGGCACAGGGGGCCCTCAGCTTCCTGGA 56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000030903.12 |
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| CDS-3UTR CCA 90 bp | CCTGATAGACTCCAAGATGGTCTGGCGGTGCTCAGCAGCCTTGAGTCGAATCTGTACTGGGCCCTAGCCTaGTGCTGTCGTGTCTCTTCA | + |
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Preference number: 4 (lower is better) Translates to: PDRLQDGLAVLSSLESNLYWALA*CCRVSS Trigger: TGAAGAGACACGACAGCACCAGGCTAGGGCCCAGTA...CAGATTCGACTCAAGGCTGCTGAGCACCGCCAGACCATCTTGGAGTCTATCAGG 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000176043.2 ENSMUST00000184913.8 |
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| CDS-3UTR CCA 90 bp | ATAGACTCCAAGATGGTCTGGCGGTGCTCAGCAGCCTTGAGTCGAATCTGTTCCTACTGGGCCCTAGCCTaGTGCTGTCGTGTCTCTTCA | + |
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Preference number: 4 (lower is better) Translates to: IDSKMVWRCSAALSRICSYWALA*CCRVSS Trigger: TGAAGAGACACGACAGCACCAGGCTAGGGCCCAGTA...GGAACAGATTCGACTCAAGGCTGCTGAGCACCGCCAGACCATCTTGGAGTCTAT 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000176043.2 ENSMUST00000184913.8 |
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| CDS-3UTR GCA 90 bp | ACACCTCCAGTATCCCACAACTCCGCAGAGGCATTTGGAGCAATGTTGACCTCTCAGTCGAAGACCTTGTaGATGGCAGTCACACCCTCC | + |
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Preference number: 4 (lower is better) Translates to: TPPVSHNSAEAFGAMLTSQSKTL*MAVTPS Trigger: GGAGGGTGTGACTGCCATGCACAAGGTCTTCGACTG...AGAGGTCAACATTGCTCCAAATGCCTCTGCGGAGTTGTGGGATACTGGAGGTGT 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000030903.12 |
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| 3UTR CAA 72 bp | CCTGAATGCAGTGCAAGTTTCTTGGCAAATAGTGTCTaGCCAGTCCCCGGGGGCCCATACATCAGAACGTTC | + |
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Preference number: 4 (lower is better) Translates to: PECSASFLANSV*PVPGGPYIRTF Trigger: GAACGTTCTGATGTATGGGCCCCCGGGGACTGGCAAGACACTATTTGCCAAGAAACTTGCACTGCATTCAGG 53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000175679.8 |
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| CDS-3UTR GCA 90 bp | GACTCCAAGATGGTCTGGCGGTGCTCAGCAGCCTTGAGTCGAATCTGTTCCCGGTCTTCATTCAGAAGTTaGTGTTGTTTCAGCTGGTCC | + |
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Preference number: 4 (lower is better) Translates to: DSKMVWRCSAALSRICSRSSFRS*CCFSWS Trigger: GGACCAGCTGAAACAACAGCAACTTCTGAATGAAGA...CCGGGAACAGATTCGACTCAAGGCTGCTGAGCACCGCCAGACCATCTTGGAGTC 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000176043.2 |
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| CDS-3UTR GCA 90 bp | GTTTCTTGGCAAATAGTGTCTTGCCAGTCCCCGGGGGCCCATACATCAGAACGTATGGCCTCCTGCTTCTaGACAGACTCCTCTTGTTTC | + |
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Preference number: 4 (lower is better) Translates to: VSWQIVSCQSPGAHTSERMASCF*TDSSCF Trigger: GAAACAAGAGGAGTCTGTGCAGAAGCAGGAGGCCAT...ACGTTCTGATGTATGGGCCCCCGGGGACTGGCAAGACACTATTTGCCAAGAAAC 52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000175679.8 |
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| CDS-3UTR GCA 90 bp | AATGCCTCTAGCACTGAGATTCGGGAGGTCTCTCTCACCAAGGACGGCTTTCCCAACATCTCGTTTTTATaGCTCAGCTCCATCTCGCGC | + |
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Preference number: 4 (lower is better) Translates to: NASSTEIREVSLTKDGFPNISFL*LSSISR Trigger: GCGCGAGATGGAGCTGAGGCATAAAAACGAGATGTT...GGGAAAGCCGTCCTTGGTGAGAGAGACCTCCCGAATCTCAGTGCTAGAGGCATT 52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000184131.2 |
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| CDS-3UTR CCA 90 bp | ATCCCACAACTCCGCAGAGGCATTTGGAGCAATGTTGACCTCTTACAGAGGTCATACTGGGCCCTAGCCTaGTGCTGTCGTGTCTCTTCA | + |
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Preference number: 4 (lower is better) Translates to: IPQLRRGIWSNVDLLQRSYWALA*CCRVSS Trigger: TGAAGAGACACGACAGCACCAGGCTAGGGCCCAGTA...TGACCTCTGTAAGAGGTCAACATTGCTCCAAATGCCTCTGCGGAGTTGTGGGAT 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000030903.12 |
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| CDS-3UTR CCA 90 bp | TTCGATTCTGGATTTAAAAGGCCCGGACTCAGTAGAGGGAAGGCGGTAGTTCTGCACTGCATCTTCTGCTaGTGCTGCTGCACAGCATCC | + |
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Preference number: 4 (lower is better) Translates to: FDSGFKRPGLSRGKAVVLHCIFC*CCCTAS Trigger: GGATGCTGTGCAGCAGCACCAGCAGAAGATGCAGTG...CAGAACTACCGCCTTCCCTCTACTGAGTCCGGGCCTTTTAAATCCAGAATCGAA 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000030903.12 |
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| CDS-3UTR GCA 90 bp | TTCTTGGCAAATAGTGTCTTGCCAGTCCCCGGGGGCCCATACATCAGAACGTTCAACATCTCGTTTTTATaGCTCAGCTCCATCTCGCGC | + |
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Preference number: 4 (lower is better) Translates to: FLANSVLPVPGGPYIRTFNISFL*LSSISR Trigger: GCGCGAGATGGAGCTGAGGCATAAAAACGAGATGTT...GAACGTTCTGATGTATGGGCCCCCGGGGACTGGCAAGACACTATTTGCCAAGAA 51% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt. Matches the following 1 transcripts: ENSMUST00000175679.8 |
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| CDS-3UTR GCA 90 bp | ATAGACTCCAAGATGGTCTGGCGGTGCTCAGCAGCCTTGAGTCGAATCTGTTCCTCCGCACTGCTGACATaGACACATAGACCTAGATAC | + |
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Preference number: 4 (lower is better) Translates to: IDSKMVWRCSAALSRICSSALLT*THRPRY Trigger: GTATCTAGGTCTATGTGTGCATGTCAGCAGTGCGGA...GGAACAGATTCGACTCAAGGCTGCTGAGCACCGCCAGACCATCTTGGAGTCTAT 51% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000176043.2 |
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| 3UTR CAA 72 bp | ATAGACTCCAAGATGGTCTGGCGGTGCTCAGCAGCCTaGAGTCGAATCTGTTCCCGGATGATATCTGCATTC | + |
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Preference number: 4 (lower is better) Translates to: IDSKMVWRCSAA*SRICSRMISAF Trigger: GAATGCAGATATCATCCGGGAACAGATTCGACTCAAGGCTGCTGAGCACCGCCAGACCATCTTGGAGTCTAT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000176043.2 ENSMUST00000184913.8 |
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| CDS-3UTR GCA 90 bp | TTATTCGATTCTGGATTTAAAAGGCCCGGACTCAGTAGAGGGAAGGCGGTAGTTTGCATCTTCTGCTGGTaGTGCTGCACAGCATCCTGC | + |
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Preference number: 4 (lower is better) Translates to: LFDSGFKRPGLSRGKAVVCIFCW*CCTASC Trigger: GCAGGATGCTGTGCAGCAGCACCAGCAGAAGATGCA...AACTACCGCCTTCCCTCTACTGAGTCCGGGCCTTTTAAATCCAGAATCGAATAA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000030903.12 |
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| CDS-3UTR CCA 90 bp | CCTGATAGACTCCAAGATGGTCTGGCGGTGCTCAGCAGCCTTGAGTCGAATCTGAAAAGGCAAAGACAGTaGTCTTCAGCCCACATTGTA | + |
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Preference number: 4 (lower is better) Translates to: PDRLQDGLAVLSSLESNLKRQRQ*SSAHIV Trigger: TACAATGTGGGCTGAAGACCACTGTCTTTGCCTTTT...CAGATTCGACTCAAGGCTGCTGAGCACCGCCAGACCATCTTGGAGTCTATCAGG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000176043.2 |
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| CDS-3UTR GCA 90 bp | GTGCAAGTTTCTTGGCAAATAGTGTCTTGCCAGTCCCCGGGGGCCCATACATCATCTTCATTCAGAAGTTaGTGTTGTTTCAGCTGGTCC | + |
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Preference number: 4 (lower is better) Translates to: VQVSWQIVSCQSPGAHTSSSFRS*CCFSWS Trigger: GGACCAGCTGAAACAACAGCAACTTCTGAATGAAGA...TGATGTATGGGCCCCCGGGGACTGGCAAGACACTATTTGCCAAGAAACTTGCAC 49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000175679.8 |
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| CDS-3UTR GCA 90 bp | AGTTTCTTGGCAAATAGTGTCTTGCCAGTCCCCGGGGGCCCATACATCAGAACGCTTGGTATTTCTTGTTaGGATGGCAATATCTCGGAC | + |
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Preference number: 4 (lower is better) Translates to: SFLANSVLPVPGGPYIRTLGISC*DGNISD Trigger: GTCCGAGATATTGCCATCGCAACAAGAAATACCAAG...CGTTCTGATGTATGGGCCCCCGGGGACTGGCAAGACACTATTTGCCAAGAAACT 49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000175679.8 |
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| CDS-3UTR CCA 90 bp | TGCAGTGCAAGTTTCTTGGCAAATAGTGTCTTGCCAGTCCCCGGGGGCCCATACGGCTTTTGTTCTTCTTaGTATTTCTTGTTGCGATGG | + |
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Preference number: 4 (lower is better) Translates to: CSASFLANSVLPVPGGPYGFCSS*YFLLRW Trigger: CCATCGCAACAAGAAATACCAAGAAGAACAAAAGCC...GTATGGGCCCCCGGGGACTGGCAAGACACTATTTGCCAAGAAACTTGCACTGCA 49% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000175679.8 |
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| CDS-3UTR CCA 90 bp | GAAGCTGACACCTCCAGTATCCCACAACTCCGCAGAGGCATTTGGAGCAATGTTGCAGTGCAAGTTTCTTaGCAAATAGTGTCTTGCCAG | + |
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Preference number: 4 (lower is better) Translates to: EADTSSIPQLRRGIWSNVAVQVS*QIVSCQ Trigger: CTGGCAAGACACTATTTGCCAAGAAACTTGCACTGC...AACATTGCTCCAAATGCCTCTGCGGAGTTGTGGGATACTGGAGGTGTCAGCTTC 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000030903.12 |
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| 3UTR CAA 72 bp | GTATCCCACAACTCCGCAGAGGCATTTGGAGCAATGTaGACCTCTTACAGAGGTCAAAGAAGACAGGAAAGG | + |
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Preference number: 4 (lower is better) Translates to: VSHNSAEAFGAM*TSYRGQRRQER Trigger: CCTTTCCTGTCTTCTTTGACCTCTGTAAGAGGTCAACATTGCTCCAAATGCCTCTGCGGAGTTGTGGGATAC 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000030903.12 |
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| CDS-3UTR GCA 90 bp | TTCTTGGCAAATAGTGTCTTGCCAGTCCCCGGGGGCCCATACATCAGAACGTTCAGAAGTAGCATTCTTTaGAGAATAGACTCCAACAGC | + |
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Preference number: 4 (lower is better) Translates to: FLANSVLPVPGGPYIRTFRSSIL*RIDSNS Trigger: GCTGTTGGAGTCTATTCTGCAAAGAATGCTACTTCT...GAACGTTCTGATGTATGGGCCCCCGGGGACTGGCAAGACACTATTTGCCAAGAA 48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000175679.8 |
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| CDS-3UTR CCA 90 bp | GGCACAGATGTGTATATGGTAGGAGTAATGTCCAGGAAGCTGAGGGCCCCCTGTGGCTTTTGTTCTTCTTaGTATTTCTTGTTGCGATGG | + |
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Preference number: 4 (lower is better) Translates to: GTDVYMVGVMSRKLRAPCGFCSS*YFLLRW Trigger: CCATCGCAACAAGAAATACCAAGAAGAACAAAAGCC...ACAGGGGGCCCTCAGCTTCCTGGACATTACTCCTACCATATACACATCTGTGCC 48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000030903.12 |
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| CDS-3UTR GCA 90 bp | TTATTCGATTCTGGATTTAAAAGGCCCGGACTCAGTAGAGGGAAGGCGGTAGTTAACATCTCGTTTTTATaGCTCAGCTCCATCTCGCGC | + |
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Preference number: 4 (lower is better) Translates to: LFDSGFKRPGLSRGKAVVNISFL*LSSISR Trigger: GCGCGAGATGGAGCTGAGGCATAAAAACGAGATGTT...AACTACCGCCTTCCCTCTACTGAGTCCGGGCCTTTTAAATCCAGAATCGAATAA 47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000030903.12 |
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| CDS-3UTR GCA 90 bp | TTCGATTCTGGATTTAAAAGGCCCGGACTCAGTAGAGGGAAGGCGGTAGTTCTGCTTGGTATTTCTTGTTaGGATGGCAATATCTCGGAC | + |
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Preference number: 4 (lower is better) Translates to: FDSGFKRPGLSRGKAVVLLGISC*DGNISD Trigger: GTCCGAGATATTGCCATCGCAACAAGAAATACCAAG...CAGAACTACCGCCTTCCCTCTACTGAGTCCGGGCCTTTTAAATCCAGAATCGAA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000030903.12 |
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| CDS-3UTR GCA 90 bp | GAGGCATTTGGAGCAATGTTGACCTCTTACAGAGGTCAAAGAAGACAGGAAAGGTCTACTTTAAGCCACTaGATCTTCTGCTGGTGCTGC | + |
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Preference number: 4 (lower is better) Translates to: EAFGAMLTSYRGQRRQERSTLSH*IFCWCC Trigger: GCAGCACCAGCAGAAGATGCAGTGGCTTAAAGTAGA...CCTTTCCTGTCTTCTTTGACCTCTGTAAGAGGTCAACATTGCTCCAAATGCCTC 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000030903.12 |
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| CDS-3UTR GCA 90 bp | GGCATTTGGAGCAATGTTGACCTCTTACAGAGGTCAAAGAAGACAGGAAAGGAGAGAAGTAGCATTCTTTaGAGAATAGACTCCAACAGC | + |
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Preference number: 4 (lower is better) Translates to: GIWSNVDLLQRSKKTGKERSSIL*RIDSNS Trigger: GCTGTTGGAGTCTATTCTGCAAAGAATGCTACTTCT...CTCCTTTCCTGTCTTCTTTGACCTCTGTAAGAGGTCAACATTGCTCCAAATGCC 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000030903.12 |
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| CDS-3UTR CAA 90 bp | TCCAGGAAGCTGAGGGCCCCCTGTGCCTTTAGCCTGGTCCCTGTAGGCCCCAGTAGACTCAGTGCCTCCTaGGCATGGCGCGAGTGCTCC | + |
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Preference number: 5 (lower is better) Translates to: SRKLRAPCAFSLVPVGPSRLSAS*AWRECS Trigger: GGAGCACTCGCGCCATGCCAAGGAGGCACTGAGTCT...ACTGGGGCCTACAGGGACCAGGCTAAAGGCACAGGGGGCCCTCAGCTTCCTGGA 64% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000030903.12 |
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| CDS-3UTR CAA 90 bp | GACTCCAAGATGGTCTGGCGGTGCTCAGCAGCCTTGAGTCGAATCTGTTCCCGGAGACTCAGTGCCTCCTaGGCATGGCGCGAGTGCTCC | + |
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Preference number: 5 (lower is better) Translates to: DSKMVWRCSAALSRICSRRLSAS*AWRECS Trigger: GGAGCACTCGCGCCATGCCAAGGAGGCACTGAGTCT...CCGGGAACAGATTCGACTCAAGGCTGCTGAGCACCGCCAGACCATCTTGGAGTC 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000176043.2 ENSMUST00000184913.8 |
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| CDS-3UTR CAA 90 bp | CTGATAGACTCCAAGATGGTCTGGCGGTGCTCAGCAGCCTTGAGTCGAATCTGTAGACTCAGTGCCTCCTaGGCATGGCGCGAGTGCTCC | + |
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Preference number: 5 (lower is better) Translates to: LIDSKMVWRCSAALSRICRLSAS*AWRECS Trigger: GGAGCACTCGCGCCATGCCAAGGAGGCACTGAGTCT...ACAGATTCGACTCAAGGCTGCTGAGCACCGCCAGACCATCTTGGAGTCTATCAG 58% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000176043.2 ENSMUST00000184913.8 |
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| CDS CCA 90 bp | CATCTCGCGCTCCACAGTGGCTGTCCCACAAAAAGGCAAAGACAGTaGTCTTCAGCCCACATTGTACCTGCCTCTGTCCGCACTGCTGAC | + |
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Preference number: 5 (lower is better) Translates to: HLALHSGCPTKRQRQ*SSAHIVPASVRTAD Trigger: GTCAGCAGTGCGGACAGAGGCAGGTACAATGTGGGCTGAAGACCACTGTCTTTGCCTTTTTGTGGGACAGCCACTGTGGAGCGCGAGATG 57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000176043.2 |
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| CDS-3UTR CAA 90 bp | AGGAGGGAGCAGTGTGGTCATAGAGACTGGCTGCCCCAGTCAGGTGTACAAGGTTCGTACTCCTTGAGCTaGGACTGCTGTTCCAGCTGC | + |
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Preference number: 5 (lower is better) Translates to: RREQCGHRDWLPQSGVQGSYSLS*DCCSSC Trigger: GCAGCTGGAACAGCAGTCCAAGCTCAAGGAGTACGA...ACCTTGTACACCTGACTGGGGCAGCCAGTCTCTATGACCACACTGCTCCCTCCT 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000030903.12 |
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| CDS-3UTR CAA 90 bp | CCTGATAGACTCCAAGATGGTCTGGCGGTGCTCAGCAGCCTTGAGTCGAATCTGGGTCTTCAGCCCACATaGTACCTGCCTCTGTCCGCA | + |
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Preference number: 5 (lower is better) Translates to: PDRLQDGLAVLSSLESNLGLQPT*YLPLSA Trigger: TGCGGACAGAGGCAGGTACAATGTGGGCTGAAGACC...CAGATTCGACTCAAGGCTGCTGAGCACCGCCAGACCATCTTGGAGTCTATCAGG 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000176043.2 |
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| CDS TCA 90 bp | ACAGTGGTCTTCAGCCCACATTGTACCTGCCTCTGTCCGCACTGCTaGCATGCACACATAGACCTAGATACTCGCCGTATGGCCTCCTGC | + |
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Preference number: 5 (lower is better) Translates to: TVVFSPHCTCLCPHC*HAHIDLDTRRMASC Trigger: GCAGGAGGCCATACGGCGAGTATCTAGGTCTATGTGTGCATGTCAGCAGTGCGGACAGAGGCAGGTACAATGTGGGCTGAAGACCACTGT 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000176043.2 |
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| CDS-3UTR CAA 90 bp | CCTGATAGACTCCAAGATGGTCTGGCGGTGCTCAGCAGCCTTGAGTCGAATCTGTCGTACTCCTTGAGCTaGGACTGCTGTTCCAGCTGC | + |
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Preference number: 5 (lower is better) Translates to: PDRLQDGLAVLSSLESNLSYSLS*DCCSSC Trigger: GCAGCTGGAACAGCAGTCCAAGCTCAAGGAGTACGA...CAGATTCGACTCAAGGCTGCTGAGCACCGCCAGACCATCTTGGAGTCTATCAGG 56% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000176043.2 ENSMUST00000184913.8 |
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| CDS GCA 90 bp | TGGGAATCGGGTCTCTCTACTTTAAGCCACTGCATCTTCTGCTGGTaGTGCTGCACAGCATCCTGCACACGGGCATCCATCATAGCTTCC | + |
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Preference number: 5 (lower is better) Translates to: WESGLSTLSHCIFCW*CCTASCTRASIIAS Trigger: GGAAGCTATGATGGATGCCCGTGTGCAGGATGCTGTGCAGCAGCACCAGCAGAAGATGCAGTGGCTTAAAGTAGAGAGACCCGATTCCCA 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000030903.12 |
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| CDS CCA 90 bp | GTCTGGGAATCGGGTCTCTCTACTTTAAGCCACTGCATCTTCTGCTaGTGCTGCTGCACAGCATCCTGCACACGGGCATCCATCATAGCT | + |
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Preference number: 5 (lower is better) Translates to: VWESGLSTLSHCIFC*CCCTASCTRASIIA Trigger: AGCTATGATGGATGCCCGTGTGCAGGATGCTGTGCAGCAGCACCAGCAGAAGATGCAGTGGCTTAAAGTAGAGAGACCCGATTCCCAGAC 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000030903.12 |
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| CDS-3UTR CAA 90 bp | GGCATTTGGAGCAATGTTGACCTCTTACAGAGGTCAAAGAAGACAGGAAAGGAGTTGGCAAATAGTGTCTaGCCAGTCCCCGGGGGCCCA | + |
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Preference number: 5 (lower is better) Translates to: GIWSNVDLLQRSKKTGKELANSV*PVPGGP Trigger: TGGGCCCCCGGGGACTGGCAAGACACTATTTGCCAA...CTCCTTTCCTGTCTTCTTTGACCTCTGTAAGAGGTCAACATTGCTCCAAATGCC 52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000030903.12 |
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| CDS-3UTR CAA 90 bp | TTCTTGGCAAATAGTGTCTTGCCAGTCCCCGGGGGCCCATACATCAGAACGTTCCTCTTCATTCAGAAGTaGCTGTTGTTTCAGCTGGTC | + |
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Preference number: 5 (lower is better) Translates to: FLANSVLPVPGGPYIRTFLFIQK*LLFQLV Trigger: GACCAGCTGAAACAACAGCAACTTCTGAATGAAGAG...GAACGTTCTGATGTATGGGCCCCCGGGGACTGGCAAGACACTATTTGCCAAGAA 50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000175679.8 |
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| CDS-3UTR CAA 90 bp | ATAGACTCCAAGATGGTCTGGCGGTGCTCAGCAGCCTTGAGTCGAATCTGTTCCCTCTTCATTCAGAAGTaGCTGTTGTTTCAGCTGGTC | + |
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Preference number: 5 (lower is better) Translates to: IDSKMVWRCSAALSRICSLFIQK*LLFQLV Trigger: GACCAGCTGAAACAACAGCAACTTCTGAATGAAGAG...GGAACAGATTCGACTCAAGGCTGCTGAGCACCGCCAGACCATCTTGGAGTCTAT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000176043.2 |
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| CDS-3UTR CAA 90 bp | GTTTCTTGGCAAATAGTGTCTTGCCAGTCCCCGGGGGCCCATACATCAGAACGTATTCAGAAGTTGCTGTaGTTTCAGCTGGTCCTCATA | + |
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Preference number: 5 (lower is better) Translates to: VSWQIVSCQSPGAHTSERIQKLL*FQLVLI Trigger: TATGAGGACCAGCTGAAACAACAGCAACTTCTGAAT...ACGTTCTGATGTATGGGCCCCCGGGGACTGGCAAGACACTATTTGCCAAGAAAC 49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000175679.8 |
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| CDS-3UTR CAA 90 bp | ATAGACTCCAAGATGGTCTGGCGGTGCTCAGCAGCCTTGAGTCGAATCTGTTCCATTCAGAAGTTGCTGTaGTTTCAGCTGGTCCTCATA | + |
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Preference number: 5 (lower is better) Translates to: IDSKMVWRCSAALSRICSIQKLL*FQLVLI Trigger: TATGAGGACCAGCTGAAACAACAGCAACTTCTGAAT...GGAACAGATTCGACTCAAGGCTGCTGAGCACCGCCAGACCATCTTGGAGTCTAT 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000176043.2 |
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| CDS-3UTR CAA 90 bp | GAAGCTGACACCTCCAGTATCCCACAACTCCGCAGAGGCATTTGGAGCAATGTTCTCTTCATTCAGAAGTaGCTGTTGTTTCAGCTGGTC | + |
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Preference number: 5 (lower is better) Translates to: EADTSSIPQLRRGIWSNVLFIQK*LLFQLV Trigger: GACCAGCTGAAACAACAGCAACTTCTGAATGAAGAG...AACATTGCTCCAAATGCCTCTGCGGAGTTGTGGGATACTGGAGGTGTCAGCTTC 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000030903.12 |
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| CDS-3UTR CAA 90 bp | GAAGCTGACACCTCCAGTATCCCACAACTCCGCAGAGGCATTTGGAGCAATGTTATTCAGAAGTTGCTGTaGTTTCAGCTGGTCCTCATA | + |
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Preference number: 5 (lower is better) Translates to: EADTSSIPQLRRGIWSNVIQKLL*FQLVLI Trigger: TATGAGGACCAGCTGAAACAACAGCAACTTCTGAAT...AACATTGCTCCAAATGCCTCTGCGGAGTTGTGGGATACTGGAGGTGTCAGCTTC 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000030903.12 |
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| CDS-3UTR CAA 90 bp | AGTTTCTTGGCAAATAGTGTCTTGCCAGTCCCCGGGGGCCCATACATCAGAACGAGGCTTTTGTTCTTCTaGGTATTTCTTGTTGCGATG | + |
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Preference number: 5 (lower is better) Translates to: SFLANSVLPVPGGPYIRTRLLFF*VFLVAM Trigger: CATCGCAACAAGAAATACCAAGAAGAACAAAAGCCT...CGTTCTGATGTATGGGCCCCCGGGGACTGGCAAGACACTATTTGCCAAGAAACT 48% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000175679.8 |
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| CDS-3UTR CAA 90 bp | TTCGATTCTGGATTTAAAAGGCCCGGACTCAGTAGAGGGAAGGCGGTAGTTCTGTGCAGTGCAAGTTTCTaGGCAAATAGTGTCTTGCCA | + |
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Preference number: 5 (lower is better) Translates to: FDSGFKRPGLSRGKAVVLCSASF*ANSVLP Trigger: TGGCAAGACACTATTTGCCAAGAAACTTGCACTGCA...CAGAACTACCGCCTTCCCTCTACTGAGTCCGGGCCTTTTAAATCCAGAATCGAA 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000030903.12 |
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| CDS GCA 90 bp | CATGCACACATAGACCTAGATACTCGCCGTATGGCCTCCTGCTTCTaGACAGACTCCTCTTGTTTCCTTAAATTCTCTTCATTCAGAAGT | + |
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Preference number: 5 (lower is better) Translates to: HAHIDLDTRRMASCF*TDSSCFLKFSSFRS Trigger: ACTTCTGAATGAAGAGAATTTAAGGAAACAAGAGGAGTCTGTGCAGAAGCAGGAGGCCATACGGCGAGTATCTAGGTCTATGTGTGCATG 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000176043.2 |
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| CDS-3UTR CAA 90 bp | GGCATTTGGAGCAATGTTGACCTCTTACAGAGGTCAAAGAAGACAGGAAAGGAGAGGCTTTTGTTCTTCTaGGTATTTCTTGTTGCGATG | + |
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Preference number: 5 (lower is better) Translates to: GIWSNVDLLQRSKKTGKERLLFF*VFLVAM Trigger: CATCGCAACAAGAAATACCAAGAAGAACAAAAGCCT...CTCCTTTCCTGTCTTCTTTGACCTCTGTAAGAGGTCAACATTGCTCCAAATGCC 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000030903.12 |
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| CDS CCA 72 bp | TCGGGTCTCTCTACTTTAAGCCACTGCATCTTCTGCTaGTGCTGCTGCACAGCATCCTGCACACGGGCATCC | + |
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Preference number: 6 (lower is better) Translates to: SGLSTLSHCIFC*CCCTASCTRAS Trigger: GGATGCCCGTGTGCAGGATGCTGTGCAGCAGCACCAGCAGAAGATGCAGTGGCTTAAAGTAGAGAGACCCGA 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000030903.12 |
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| CDS GCA 72 bp | GGTCTCTCTACTTTAAGCCACTGCATCTTCTGCTGGTaGTGCTGCACAGCATCCTGCACACGGGCATCCATC | + |
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Preference number: 6 (lower is better) Translates to: GLSTLSHCIFCW*CCTASCTRASI Trigger: GATGGATGCCCGTGTGCAGGATGCTGTGCAGCAGCACCAGCAGAAGATGCAGTGGCTTAAAGTAGAGAGACC 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000030903.12 |
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| CDS CCA 72 bp | CTCCACAGTGGCTGTCCCACAAAAAGGCAAAGACAGTaGTCTTCAGCCCACATTGTACCTGCCTCTGTCCGC | + |
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Preference number: 6 (lower is better) Translates to: LHSGCPTKRQRQ*SSAHIVPASVR Trigger: GCGGACAGAGGCAGGTACAATGTGGGCTGAAGACCACTGTCTTTGCCTTTTTGTGGGACAGCCACTGTGGAG 56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000176043.2 |
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| CDS CCA 72 bp | CAGCTGAGGAGTGAAGGATGTGGCGGCTTGTTGGTCTaGGAATCGGGTCTCTCTACTTTAAGCCACTGCATC | + |
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Preference number: 6 (lower is better) Translates to: QLRSEGCGGLLV*ESGLSTLSHCI Trigger: GATGCAGTGGCTTAAAGTAGAGAGACCCGATTCCCAGACCAACAAGCCGCCACATCCTTCACTCCTCAGCTG 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000030903.12 |
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| CDS CAA 90 bp | GTGGCTGTCCCACAAAAAGGCAAAGACAGTGGTCTTCAGCCCACATaGTACCTGCCTCTGTCCGCACTGCTGACATGCACACATAGACCT | + |
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Preference number: 6 (lower is better) Translates to: VAVPQKGKDSGLQPT*YLPLSALLTCTHRP Trigger: AGGTCTATGTGTGCATGTCAGCAGTGCGGACAGAGGCAGGTACAATGTGGGCTGAAGACCACTGTCTTTGCCTTTTTGTGGGACAGCCAC 53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000176043.2 |
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| CDS TCA 72 bp | TTCAGCCCACATTGTACCTGCCTCTGTCCGCACTGCTaGCATGCACACATAGACCTAGATACTCGCCGTATG | + |
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Preference number: 6 (lower is better) Translates to: FSPHCTCLCPHC*HAHIDLDTRRM Trigger: CATACGGCGAGTATCTAGGTCTATGTGTGCATGTCAGCAGTGCGGACAGAGGCAGGTACAATGTGGGCTGAA 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000176043.2 |
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| CDS GCA 72 bp | CTGAATGCAGTGCAAGTTTCTTGGCAAATAGTGTCTTaGCAGTCCCCGGGGGCCCATACATCAGAACGTTCC | + |
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Preference number: 6 (lower is better) Translates to: LNAVQVSWQIVS*QSPGAHTSERS Trigger: GGAACGTTCTGATGTATGGGCCCCCGGGGACTGGCAAGACACTATTTGCCAAGAAACTTGCACTGCATTCAG 53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000030903.12 |
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| CDS CAA 72 bp | GGCAGGGCAAAGCAGACCATCTCGTCAATGCGGTCATaGATAGCCCAATCAAACTGCTCAGGCTGGTTACTG | + |
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Preference number: 6 (lower is better) Translates to: GRAKQTISSMRS*IAQSNCSGWLL Trigger: CAGTAACCAGCCTGAGCAGTTTGATTGGGCTATCAATGACCGCATTGACGAGATGGTCTGCTTTGCCCTGCC 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000030903.12 |
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| CDS GCA 72 bp | GCACACATAGACCTAGATACTCGCCGTATGGCCTCCTaGTTCTGCACAGACTCCTCTTGTTTCCTTAAATTC | + |
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Preference number: 6 (lower is better) Translates to: AHIDLDTRRMAS*FCTDSSCFLKF Trigger: GAATTTAAGGAAACAAGAGGAGTCTGTGCAGAAGCAGGAGGCCATACGGCGAGTATCTAGGTCTATGTGTGC 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000176043.2 |
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| CDS GCA 72 bp | ATAGACCTAGATACTCGCCGTATGGCCTCCTGCTTCTaGACAGACTCCTCTTGTTTCCTTAAATTCTCTTCA | + |
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Preference number: 6 (lower is better) Translates to: IDLDTRRMASCF*TDSSCFLKFSS Trigger: TGAAGAGAATTTAAGGAAACAAGAGGAGTCTGTGCAGAAGCAGGAGGCCATACGGCGAGTATCTAGGTCTAT 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000176043.2 |
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| CDS CCA 72 bp | ACATCAGAACGTTCCTATACAGGCTTTTGTTCTTCTTaGTATTTCTTGTTGCGATGGCAATATCTCGGACCC | + |
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Preference number: 6 (lower is better) Translates to: TSERSYTGFCSS*YFLLRWQYLGP Trigger: GGGTCCGAGATATTGCCATCGCAACAAGAAATACCAAGAAGAACAAAAGCCTGTATAGGAACGTTCTGATGT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000030903.12 |
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| CDS CAA 72 bp | TACATCAGAACGTTCCTATACAGGCTTTTGTTCTTCTaGGTATTTCTTGTTGCGATGGCAATATCTCGGACC | + |
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Preference number: 6 (lower is better) Translates to: YIRTFLYRLLFF*VFLVAMAISRT Trigger: GGTCCGAGATATTGCCATCGCAACAAGAAATACCAAGAAGAACAAAAGCCTGTATAGGAACGTTCTGATGTA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000030903.12 |
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