Pregenerated sensors for ASPRV1 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000033508Ensembl transcript IDs: ENSMUST00000043400.9
Found 48 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR CCA 90 bp | CTCAGGGAGGACTCCCAGAGCAGCTGCCAGTCTCCTCCAAGCATCTaGATTGTGAGGGTCTTAGCCAAGACCAGGCTCAGCTCAGCAGGC | + |
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Preference number: 1 (lower is better) Translates to: LREDSQSSCQSPPSI*IVRVLAKTRLSSAG Trigger: GCCTGCTGAGCTGAGCCTGGTCTTGGCTAAGACCCTCACAATCCAGATGCTTGGAGGAGACTGGCAGCTGCTCTGGGAGTCCTCCCTGAG 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000043400.9 |
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| 3UTR GCA 90 bp | ATCCTTGTGCAGGTGGGAGGACTCAGGGAGGACTCCCAGAGCAGCTaGCAGTCTCCTCCAAGCATCTGGATTGTGAGGGTCTTAGCCAAG | + |
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Preference number: 1 (lower is better) Translates to: ILVQVGGLREDSQSS*QSPPSIWIVRVLAK Trigger: CTTGGCTAAGACCCTCACAATCCAGATGCTTGGAGGAGACTGGCAGCTGCTCTGGGAGTCCTCCCTGAGTCCTCCCACCTGCACAAGGAT 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000043400.9 |
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| 3UTR TCA 90 bp | ACTGAGCCATACTTCAGGGGATCTAAAAGGGTCCTCTCTCAAGATTaGCATTCCTGGCTTCCTCAGAAGCTCCTGCCAGCCTTGGAAGTC | + |
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Preference number: 1 (lower is better) Translates to: TEPYFRGSKRVLSQD*HSWLPQKLLPALEV Trigger: GACTTCCAAGGCTGGCAGGAGCTTCTGAGGAAGCCAGGAATGTCAATCTTGAGAGAGGACCCTTTTAGATCCCCTGAAGTATGGCTCAGT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000043400.9 |
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| 3UTR TCA 90 bp | CTTTATTGGTGTTTTGAAATAATTGAATTATTGATACAGGCTCCATaGGATTCAAGGCAAGTGACAGGACAGGAGGGAGCATCCTTGTGC | + |
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Preference number: 1 (lower is better) Translates to: LYWCFEIIELLIQAP*DSRQVTGQEGASLC Trigger: GCACAAGGATGCTCCCTCCTGTCCTGTCACTTGCCTTGAATCTCATGGAGCCTGTATCAATAATTCAATTATTTCAAAACACCAATAAAG 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000043400.9 |
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| 3UTR-3UTR CCA 90 bp | GGCCTCCCTCCCCAAACAAAGGCAAAGCAAGGCCCCTGTAGAAGGAGGGAAACTTCCCCCTACCAATGCTaGGAACAAGAAATGGGGTTT | + |
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Preference number: 2 (lower is better) Translates to: GLPPQTKAKQGPCRRRETSPYQC*EQEMGF Trigger: AAACCCCATTTCTTGTTCCCAGCATTGGTAGGGGGA...AGTTTCCCTCCTTCTACAGGGGCCTTGCTTTGCCTTTGTTTGGGGAGGGAGGCC 53% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt. Matches the following 1 transcripts: ENSMUST00000043400.9 |
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| 3UTR-3UTR GCA 90 bp | GATCTAAAAGGGTCCTCTCTCAAGATTGACATTCCTGGCTTCCTCAGAAGCTCCAGACCTTGGGGACACTaGTTTAGGCCACCAAGCTGG | + |
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Preference number: 2 (lower is better) Translates to: DLKGSSLKIDIPGFLRSSRPWGH*FRPPSW Trigger: CCAGCTTGGTGGCCTAAAGCAGTGTCCCCAAGGTCT...GGAGCTTCTGAGGAAGCCAGGAATGTCAATCTTGAGAGAGGACCCTTTTAGATC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000043400.9 |
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| 3UTR CCA 72 bp | TGCAGACCTTGGGGACACTGCTTTAGGCCACCAAGCTaGCCTCCCTCCCCAAACAAAGGCAAAGCAAGGCCC | + |
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Preference number: 3 (lower is better) Translates to: CRPWGHCFRPPS*PPSPNKGKARP Trigger: GGGCCTTGCTTTGCCTTTGTTTGGGGAGGGAGGCCAGCTTGGTGGCCTAAAGCAGTGTCCCCAAGGTCTGCA 60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000043400.9 |
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| 3UTR CCA 72 bp | GACTCCCAGAGCAGCTGCCAGTCTCCTCCAAGCATCTaGATTGTGAGGGTCTTAGCCAAGACCAGGCTCAGC | + |
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Preference number: 3 (lower is better) Translates to: DSQSSCQSPPSI*IVRVLAKTRLS Trigger: GCTGAGCCTGGTCTTGGCTAAGACCCTCACAATCCAGATGCTTGGAGGAGACTGGCAGCTGCTCTGGGAGTC 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000043400.9 |
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| 3UTR GCA 72 bp | GCTTCCTCAGAAGCTCCTGCCAGCCTTGGAAGTCTTTaGAGACCTTGGGGACACTGCTTTAGGCCACCAAGC | + |
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Preference number: 3 (lower is better) Translates to: ASSEAPASLGSL*RPWGHCFRPPS Trigger: GCTTGGTGGCCTAAAGCAGTGTCCCCAAGGTCTGCAAAGACTTCCAAGGCTGGCAGGAGCTTCTGAGGAAGC 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000043400.9 |
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| 3UTR GCA 72 bp | CTCAAGATTGACATTCCTGGCTTCCTCAGAAGCTCCTaGCAGCCTTGGAAGTCTTTGCAGACCTTGGGGACA | + |
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Preference number: 3 (lower is better) Translates to: LKIDIPGFLRSS*QPWKSLQTLGT Trigger: TGTCCCCAAGGTCTGCAAAGACTTCCAAGGCTGGCAGGAGCTTCTGAGGAAGCCAGGAATGTCAATCTTGAG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000043400.9 |
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| 3UTR-3UTR CAA 90 bp | GATCTAAAAGGGTCCTCTCTCAAGATTGACATTCCTGGCTTCCTCAGAAGCTCCCAGCCTTGGAAGTCTTaGCAGACCTTGGGGACACTG | + |
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Preference number: 3 (lower is better) Translates to: DLKGSSLKIDIPGFLRSSQPWKS*QTLGTL Trigger: CAGTGTCCCCAAGGTCTGCAAAGACTTCCAAGGCTG...GGAGCTTCTGAGGAAGCCAGGAATGTCAATCTTGAGAGAGGACCCTTTTAGATC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000043400.9 |
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| 3UTR TCA 72 bp | TGTTTTGAAATAATTGAATTATTGATACAGGCTCCATaGGATTCAAGGCAAGTGACAGGACAGGAGGGAGCA | + |
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Preference number: 3 (lower is better) Translates to: CFEIIELLIQAP*DSRQVTGQEGA Trigger: TGCTCCCTCCTGTCCTGTCACTTGCCTTGAATCTCATGGAGCCTGTATCAATAATTCAATTATTTCAAAACA 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000043400.9 |
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| CDS-3UTR GCA 90 bp | GGCCTCCCTCCCCAAACAAAGGCAAAGCAAGGCCCCTGTAGAAGGAGGGAAACTTCTGGGACGAAGGCATaGTCCCGGCGTCCTTCCTTG | + |
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Preference number: 4 (lower is better) Translates to: GLPPQTKAKQGPCRRRETSGTKA*SRRPSL Trigger: CAAGGAAGGACGCCGGGAGCATGCCTTCGTCCCAGA...AGTTTCCCTCCTTCTACAGGGGCCTTGCTTTGCCTTTGTTTGGGGAGGGAGGCC 59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000043400.9 |
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| CDS-3UTR TCA 90 bp | GCCTCCCTCCCCAAACAAAGGCAAAGCAAGGCCCCTGTAGAAGGAGGGAAACTGCCAGGGCATCTCCCTTaGGCGACTCTTTCAGGAACC | + |
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Preference number: 4 (lower is better) Translates to: ASLPKQRQSKAPVEGGKLPGHLP*ATLSGT Trigger: GGTTCCTGAAAGAGTCGCTCAAGGGAGATGCCCTGG...CAGTTTCCCTCCTTCTACAGGGGCCTTGCTTTGCCTTTGTTTGGGGAGGGAGGC 58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000043400.9 |
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| CDS-3UTR CCA 90 bp | GATTGTGAGGGTCTTAGCCAAGACCAGGCTCAGCTCAGCAGGCTTGGGGACGTGACCAGTGAAAGGTTCTaGGACGAAGGCATGCTCCCG | + |
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Preference number: 4 (lower is better) Translates to: DCEGLSQDQAQLSRLGDVTSERF*DEGMLP Trigger: CGGGAGCATGCCTTCGTCCCAGAACCTTTCACTGGT...CACGTCCCCAAGCCTGCTGAGCTGAGCCTGGTCTTGGCTAAGACCCTCACAATC 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000043400.9 |
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| 3UTR CAA 72 bp | GATTCAAGGCAAGTGACAGGACAGGAGGGAGCATCCTaGTGCAGGTGGGAGGACTCAGGGAGGACTCCCAGA | + |
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Preference number: 4 (lower is better) Translates to: DSRQVTGQEGAS*CRWEDSGRTPR Trigger: TCTGGGAGTCCTCCCTGAGTCCTCCCACCTGCACAAGGATGCTCCCTCCTGTCCTGTCACTTGCCTTGAATC 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000043400.9 |
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| CDS-3UTR TCA 90 bp | GATTGTGAGGGTCTTAGCCAAGACCAGGCTCAGCTCAGCAGGCTTGGGGACGTGCTCAGTTTGGTGGCATaGTCCCAATGGTTGAGGTCA | + |
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Preference number: 4 (lower is better) Translates to: DCEGLSQDQAQLSRLGDVLSLVA*SQWLRS Trigger: TGACCTCAACCATTGGGATCATGCCACCAAACTGAG...CACGTCCCCAAGCCTGCTGAGCTGAGCCTGGTCTTGGCTAAGACCCTCACAATC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000043400.9 |
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| CDS-3UTR GCA 90 bp | GATTGTGAGGGTCTTAGCCAAGACCAGGCTCAGCTCAGCAGGCTTGGGGACGTGGCCCTCAGGAGGGCTTaGTTCACAAAACTGAAATCG | + |
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Preference number: 4 (lower is better) Translates to: DCEGLSQDQAQLSRLGDVALRRA*FTKLKS Trigger: CGATTTCAGTTTTGTGAAGCAAGCCCTCCTGAGGGC...CACGTCCCCAAGCCTGCTGAGCTGAGCCTGGTCTTGGCTAAGACCCTCACAATC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000043400.9 |
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| CDS-3UTR GCA 90 bp | GCCTCCCTCCCCAAACAAAGGCAAAGCAAGGCCCCTGTAGAAGGAGGGAAACTGACGGCATTGTGGTCCTaGAAGACGTCTGTGCCAATA | + |
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Preference number: 4 (lower is better) Translates to: ASLPKQRQSKAPVEGGKLTALWS*KTSVPI Trigger: TATTGGCACAGACGTCTTGCAGGACCACAATGCCGT...CAGTTTCCCTCCTTCTACAGGGGCCTTGCTTTGCCTTTGTTTGGGGAGGGAGGC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000043400.9 |
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| CDS-3UTR CCA 90 bp | GACACTGCTTTAGGCCACCAAGCTGGCCTCCCTCCCCAAACAAAGGCAAAGCAAAAACTGAAATCGCCCTaGGCCTGGGAACTGAGTCCA | + |
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Preference number: 4 (lower is better) Translates to: DTALGHQAGLPPQTKAKQKLKSP*AWELSP Trigger: TGGACTCAGTTCCCAGGCCCAGGGCGATTTCAGTTT...TTGCTTTGCCTTTGTTTGGGGAGGGAGGCCAGCTTGGTGGCCTAAAGCAGTGTC 54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000043400.9 |
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| CDS-3UTR CCA 90 bp | GGCCTCCCTCCCCAAACAAAGGCAAAGCAAGGCCCCTGTAGAAGGAGGGAAACTTCAGGAACCTCAGTTTaGTGGCATGATCCCAATGGT | + |
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Preference number: 4 (lower is better) Translates to: GLPPQTKAKQGPCRRRETSGTSV*WHDPNG Trigger: ACCATTGGGATCATGCCACCAAACTGAGGTTCCTGA...AGTTTCCCTCCTTCTACAGGGGCCTTGCTTTGCCTTTGTTTGGGGAGGGAGGCC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000043400.9 |
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| CDS-3UTR CCA 90 bp | CACTGCTTTAGGCCACCAAGCTGGCCTCCCTCCCCAAACAAAGGCAAAGCAAGGAATCTCACAGGCACATaGCCAACCTTCCCTTTAAGG | + |
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Preference number: 4 (lower is better) Translates to: HCFRPPSWPPSPNKGKARNLTGT*PTFPLR Trigger: CCTTAAAGGGAAGGTTGGCCATGTGCCTGTGAGATT...CCTTGCTTTGCCTTTGTTTGGGGAGGGAGGCCAGCTTGGTGGCCTAAAGCAGTG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000043400.9 |
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| CDS-3UTR GCA 90 bp | GACACTGCTTTAGGCCACCAAGCTGGCCTCCCTCCCCAAACAAAGGCAAAGCAAAGTAGCCCTTACCCATaGTGTTGGCAAACAAAATCT | + |
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Preference number: 4 (lower is better) Translates to: DTALGHQAGLPPQTKAKQSSPYP*CWQTKS Trigger: AGATTTTGTTTGCCAACAGCATGGGTAAGGGCTACT...TTGCTTTGCCTTTGTTTGGGGAGGGAGGCCAGCTTGGTGGCCTAAAGCAGTGTC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000043400.9 |
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| CDS GCA 90 bp | AGGAGCTCCCGACAGGGAGCAGGCGGAACTTCTTCCCCTTCAGGGTaGAGGTGCGGTGTTCGAAGTCCAGCACGGCATTGTGGTCCTGCA | + |
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Preference number: 5 (lower is better) Translates to: RSSRQGAGGTSSPSG*RCGVRSPARHCGPA Trigger: TGCAGGACCACAATGCCGTGCTGGACTTCGAACACCGCACCTGCACCCTGAAGGGGAAGAAGTTCCGCCTGCTCCCTGTCGGGAGCTCCT 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000043400.9 |
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| CDS GCA 90 bp | TCCCGACAGGGAGCAGGCGGAACTTCTTCCCCTTCAGGGTGCAGGTaGGGTGTTCGAAGTCCAGCACGGCATTGTGGTCCTGCAAGACGT | + |
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Preference number: 5 (lower is better) Translates to: SRQGAGGTSSPSGCR*GVRSPARHCGPARR Trigger: ACGTCTTGCAGGACCACAATGCCGTGCTGGACTTCGAACACCGCACCTGCACCCTGAAGGGGAAGAAGTTCCGCCTGCTCCCTGTCGGGA 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000043400.9 |
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| CDS-3UTR CAA 90 bp | AGGACAGGAGGGAGCATCCTTGTGCAGGTGGGAGGACTCAGGGAGGACTCCCAGAAGTCCAGCACGGCATaGTGGTCCTGCAAGACGTCT | + |
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Preference number: 5 (lower is better) Translates to: RTGGSILVQVGGLREDSQKSSTA*WSCKTS Trigger: AGACGTCTTGCAGGACCACAATGCCGTGCTGGACTT...CTGGGAGTCCTCCCTGAGTCCTCCCACCTGCACAAGGATGCTCCCTCCTGTCCT 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000043400.9 |
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| CDS GCA 90 bp | AGGGTGCAGGTGCGGTGTTCGAAGTCCAGCACGGCATTGTGGTCCTaGAAGACGTCTGTGCCAATAATAGCCTCTTCTGCGCTGGCGTTG | + |
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Preference number: 5 (lower is better) Translates to: RVQVRCSKSSTALWS*KTSVPIIASSALAL Trigger: CAACGCCAGCGCAGAAGAGGCTATTATTGGCACAGACGTCTTGCAGGACCACAATGCCGTGCTGGACTTCGAACACCGCACCTGCACCCT 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000043400.9 |
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| CDS CCA 90 bp | CCCTTCAGGGTGCAGGTGCGGTGTTCGAAGTCCAGCACGGCATTGTaGTCCTGCAAGACGTCTGTGCCAATAATAGCCTCTTCTGCGCTG | + |
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Preference number: 5 (lower is better) Translates to: PFRVQVRCSKSSTAL*SCKTSVPIIASSAL Trigger: CAGCGCAGAAGAGGCTATTATTGGCACAGACGTCTTGCAGGACCACAATGCCGTGCTGGACTTCGAACACCGCACCTGCACCCTGAAGGG 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000043400.9 |
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| CDS-3UTR CAA 90 bp | GGCCTCCCTCCCCAAACAAAGGCAAAGCAAGGCCCCTGTAGAAGGAGGGAAACTTCCAGGGCATCTCCCTaGAGCGACTCTTTCAGGAAC | + |
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Preference number: 5 (lower is better) Translates to: GLPPQTKAKQGPCRRRETSRASP*SDSFRN Trigger: GTTCCTGAAAGAGTCGCTCAAGGGAGATGCCCTGGA...AGTTTCCCTCCTTCTACAGGGGCCTTGCTTTGCCTTTGTTTGGGGAGGGAGGCC 57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000043400.9 |
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| CDS-3UTR CAA 90 bp | GCCTCCCTCCCCAAACAAAGGCAAAGCAAGGCCCCTGTAGAAGGAGGGAAACTGGGCCCTCAGGAGGGCTaGCTTCACAAAACTGAAATC | + |
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Preference number: 5 (lower is better) Translates to: ASLPKQRQSKAPVEGGKLGPQEG*LHKTEI Trigger: GATTTCAGTTTTGTGAAGCAAGCCCTCCTGAGGGCC...CAGTTTCCCTCCTTCTACAGGGGCCTTGCTTTGCCTTTGTTTGGGGAGGGAGGC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000043400.9 |
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| CDS GCA 90 bp | GGCATTGTGGTCCTGCAAGACGTCTGTGCCAATAATAGCCTCTTCTaGGCTGGCGTTGGCCACCAGAAACTCGGCCTTCAGCTTTGTCTT | + |
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Preference number: 5 (lower is better) Translates to: GIVVLQDVCANNSLF*AGVGHQKLGLQLCL Trigger: AAGACAAAGCTGAAGGCCGAGTTTCTGGTGGCCAACGCCAGCGCAGAAGAGGCTATTATTGGCACAGACGTCTTGCAGGACCACAATGCC 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000043400.9 |
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| CDS-3UTR CAA 90 bp | TGGGGACACTGCTTTAGGCCACCAAGCTGGCCTCCCTCCCCAAACAAAGGCAAACCCTTACCCATGCTGTaGGCAAACAAAATCTCTTCG | + |
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Preference number: 5 (lower is better) Translates to: WGHCFRPPSWPPSPNKGKPLPML*ANKISS Trigger: CGAAGAGATTTTGTTTGCCAACAGCATGGGTAAGGG...TTTGCCTTTGTTTGGGGAGGGAGGCCAGCTTGGTGGCCTAAAGCAGTGTCCCCA 53% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000043400.9 |
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| CDS TCA 90 bp | GCATCTCCCTTGAGCGACTCTTTCAGGAACCTCAGTTTGGTGGCATaGTCCCAATGGTTGAGGTCATCAATGACTTCAAAGCGGTGCAGC | + |
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Preference number: 5 (lower is better) Translates to: ASPLSDSFRNLSLVA*SQWLRSSMTSKRCS Trigger: GCTGCACCGCTTTGAAGTCATTGATGACCTCAACCATTGGGATCATGCCACCAAACTGAGGTTCCTGAAAGAGTCGCTCAAGGGAGATGC 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000043400.9 |
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| CDS-3UTR CAA 90 bp | GGCCTCCCTCCCCAAACAAAGGCAAAGCAAGGCCCCTGTAGAAGGAGGGAAACTGCCACTTTGACCACATaGTTAAAAGGACGAAGAGTA | + |
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Preference number: 5 (lower is better) Translates to: GLPPQTKAKQGPCRRRETATLTT*LKGRRV Trigger: TACTCTTCGTCCTTTTAACAATGTGGTCAAAGTGGC...AGTTTCCCTCCTTCTACAGGGGCCTTGCTTTGCCTTTGTTTGGGGAGGGAGGCC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000043400.9 |
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| CDS GCA 90 bp | GCCCAGGCTAATTTCTGTGTCCCACACACCCAAGATCTTCATCTCTaGCCCATTGGCCACTTTGACCACATTGTTAAAAGGACGAAGAGT | + |
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Preference number: 5 (lower is better) Translates to: AQANFCVPHTQDLHL*PIGHFDHIVKRTKS Trigger: ACTCTTCGTCCTTTTAACAATGTGGTCAAAGTGGCCAATGGGGCAGAGATGAAGATCTTGGGTGTGTGGGACACAGAAATTAGCCTGGGC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000043400.9 |
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| CDS GCA 72 bp | GGAGCAGGCGGAACTTCTTCCCCTTCAGGGTGCAGGTaGGGTGTTCGAAGTCCAGCACGGCATTGTGGTCCT | + |
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Preference number: 6 (lower is better) Translates to: GAGGTSSPSGCR*GVRSPARHCGP Trigger: AGGACCACAATGCCGTGCTGGACTTCGAACACCGCACCTGCACCCTGAAGGGGAAGAAGTTCCGCCTGCTCC 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000043400.9 |
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| CDS CAA 90 bp | TTCCCCTTCAGGGTGCAGGTGCGGTGTTCGAAGTCCAGCACGGCATaGTGGTCCTGCAAGACGTCTGTGCCAATAATAGCCTCTTCTGCG | + |
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Preference number: 6 (lower is better) Translates to: FPFRVQVRCSKSSTA*WSCKTSVPIIASSA Trigger: CGCAGAAGAGGCTATTATTGGCACAGACGTCTTGCAGGACCACAATGCCGTGCTGGACTTCGAACACCGCACCTGCACCCTGAAGGGGAA 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000043400.9 |
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| CDS CAA 90 bp | TCCTGCAAGACGTCTGTGCCAATAATAGCCTCTTCTGCGCTGGCGTaGGCCACCAGAAACTCGGCCTTCAGCTTTGTCTTGCCCAGGCTA | + |
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Preference number: 6 (lower is better) Translates to: SCKTSVPIIASSALA*ATRNSAFSFVLPRL Trigger: TAGCCTGGGCAAGACAAAGCTGAAGGCCGAGTTTCTGGTGGCCAACGCCAGCGCAGAAGAGGCTATTATTGGCACAGACGTCTTGCAGGA 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000043400.9 |
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| CDS GCA 72 bp | AAGTTAGTACCAGTGAAAGGTTCTGGGACGAAGGCATaGTCCCGGCGTCCTTCCTTGCTTCTGACTCCGCTG | + |
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Preference number: 6 (lower is better) Translates to: KLVPVKGSGTKA*SRRPSLLLTPL Trigger: CAGCGGAGTCAGAAGCAAGGAAGGACGCCGGGAGCATGCCTTCGTCCCAGAACCTTTCACTGGTACTAACTT 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000043400.9 |
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| CDS GCA 72 bp | GTGCGGTGTTCGAAGTCCAGCACGGCATTGTGGTCCTaGAAGACGTCTGTGCCAATAATAGCCTCTTCTGCG | + |
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Preference number: 6 (lower is better) Translates to: VRCSKSSTALWS*KTSVPIIASSA Trigger: CGCAGAAGAGGCTATTATTGGCACAGACGTCTTGCAGGACCACAATGCCGTGCTGGACTTCGAACACCGCAC 56% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000043400.9 |
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| CDS CAA 72 bp | ACGTCTGTGCCAATAATAGCCTCTTCTGCGCTGGCGTaGGCCACCAGAAACTCGGCCTTCAGCTTTGTCTTG | + |
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Preference number: 6 (lower is better) Translates to: TSVPIIASSALA*ATRNSAFSFVL Trigger: CAAGACAAAGCTGAAGGCCGAGTTTCTGGTGGCCAACGCCAGCGCAGAAGAGGCTATTATTGGCACAGACGT 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000043400.9 |
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| CDS GCA 72 bp | TCCCAATGGTTGAGGTCATCAATGACTTCAAAGCGGTaGAGCCAAAGGCTGGGAGCTAAGTTAGTACCAGTG | + |
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Preference number: 6 (lower is better) Translates to: SQWLRSSMTSKR*SQRLGAKLVPV Trigger: CACTGGTACTAACTTAGCTCCCAGCCTTTGGCTGCACCGCTTTGAAGTCATTGATGACCTCAACCATTGGGA 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000043400.9 |
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| CDS CAA 90 bp | ACACCCAAGATCTTCATCTCTGCCCCATTGGCCACTTTGACCACATaGTTAAAAGGACGAAGAGTATCCAGGTCACCATCAGTGACCTCC | + |
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Preference number: 6 (lower is better) Translates to: TPKIFISAPLATLTT*LKGRRVSRSPSVTS Trigger: GGAGGTCACTGATGGTGACCTGGATACTCTTCGTCCTTTTAACAATGTGGTCAAAGTGGCCAATGGGGCAGAGATGAAGATCTTGGGTGT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000043400.9 |
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| CDS CAA 90 bp | GTGTCCCACACACCCAAGATCTTCATCTCTGCCCCATTGGCCACTTaGACCACATTGTTAAAAGGACGAAGAGTATCCAGGTCACCATCA | + |
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Preference number: 6 (lower is better) Translates to: VSHTPKIFISAPLAT*TTLLKGRRVSRSPS Trigger: TGATGGTGACCTGGATACTCTTCGTCCTTTTAACAATGTGGTCAAAGTGGCCAATGGGGCAGAGATGAAGATCTTGGGTGTGTGGGACAC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000043400.9 |
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| CDS CAA 72 bp | GTGTCCCACACACCCAAGATCTTCATCTCTGCCCCATaGGCCACTTTGACCACATTGTTAAAAGGACGAAGA | + |
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Preference number: 6 (lower is better) Translates to: VSHTPKIFISAP*ATLTTLLKGRR Trigger: TCTTCGTCCTTTTAACAATGTGGTCAAAGTGGCCAATGGGGCAGAGATGAAGATCTTGGGTGTGTGGGACAC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000043400.9 |
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| CDS CAA 90 bp | CTAATTTCTGTGTCCCACACACCCAAGATCTTCATCTCTGCCCCATaGGCCACTTTGACCACATTGTTAAAAGGACGAAGAGTATCCAGG | + |
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Preference number: 6 (lower is better) Translates to: LISVSHTPKIFISAP*ATLTTLLKGRRVSR Trigger: CCTGGATACTCTTCGTCCTTTTAACAATGTGGTCAAAGTGGCCAATGGGGCAGAGATGAAGATCTTGGGTGTGTGGGACACAGAAATTAG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000043400.9 |
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| CDS CAA 72 bp | ACACCCAAGATCTTCATCTCTGCCCCATTGGCCACTTaGACCACATTGTTAAAAGGACGAAGAGTATCCAGG | + |
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Preference number: 6 (lower is better) Translates to: TPKIFISAPLAT*TTLLKGRRVSR Trigger: CCTGGATACTCTTCGTCCTTTTAACAATGTGGTCAAAGTGGCCAATGGGGCAGAGATGAAGATCTTGGGTGT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000043400.9 |
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| CDS TCA 72 bp | TTGAGCGACTCTTTCAGGAACCTCAGTTTGGTGGCATaGTCCCAATGGTTGAGGTCATCAATGACTTCAAAG | + |
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Preference number: 6 (lower is better) Translates to: LSDSFRNLSLVA*SQWLRSSMTSK Trigger: CTTTGAAGTCATTGATGACCTCAACCATTGGGATCATGCCACCAAACTGAGGTTCCTGAAAGAGTCGCTCAA 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000043400.9 |
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