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Pregenerated sensors for ASMT (Mus musculus)

Ensembl gene IDs: ENSMUSG00000093806

Ensembl transcript IDs: ENSMUST00000178693.4

Found 10 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
CDS TCA 90 bp AGTGGGCGCGGGCGGCAGCGACGACGTCGGGCGTCTCGAACACGGTaGCCTCGCTGCCCGGGTAGAGCCGGGCGGCCATGCGGGCCAGCG +
Preference number: 5 (lower is better)
Translates to: SGRGRQRRRRASRTR*PRCPGRAGRPCGPA
Trigger: CGCTGGCCCGCATGGCCGCCCGGCTCTACCCGGGCAGCGAGGTCACCGTGTTCGAGACGCCCGACGTCGTCGCTGCCGCCCGCGCCCACT
77% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000178693.4
CDS GCA 90 bp GTCAGCGCCCGGTACTCGGCCTCCGTGCGCTCGCGGCCCCGGGCCTaGAGCAGCATCGTGAGCGACAGCAGCAGCGTCCGCGTCGGCCCC +
Preference number: 5 (lower is better)
Translates to: VSARYSASVRSRPRA*SSIVSDSSSVRVGP
Trigger: GGGGCCGACGCGGACGCTGCTGCTGTCGCTCACGATGCTGCTGCAGGCCCGGGGCCGCGAGCGCACGGAGGCCGAGTACCGGGCGCTGAC
77% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000178693.4
CDS CCA 90 bp CACACACGAGGCTCCGCCCCGTCCTCGTCCGCTGGGGGCGGGAAGTaGGCGCGGGCGGCAGCGACGACGTCGGGCGTCTCGAACACGGTG +
Preference number: 5 (lower is better)
Translates to: HTRGSAPSSSAGGGK*ARAAATTSGVSNTV
Trigger: CACCGTGTTCGAGACGCCCGACGTCGTCGCTGCCGCCCGCGCCCACTTCCCGCCCCCAGCGGACGAGGACGGGGCGGAGCCTCGTGTGTG
76% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000178693.4
CDS GCA 90 bp GCCCCCAGCACAGGTAGGTGGTGCCCGCCAGGTAGAGCAGGAGGCTaGGCTGAGACAGGGGGCTGCCCGCGACCAGGAAGGTGGACGCCA +
Preference number: 5 (lower is better)
Translates to: APSTGRWCPPGRAGG*AETGGCPRPGRWTP
Trigger: TGGCGTCCACCTTCCTGGTCGCGGGCAGCCCCCTGTCTCAGCGCAGCCTCCTGCTCTACCTGGCGGGCACCACCTACCTGTGCTGGGGGC
71% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000178693.4
CDS CCA 72 bp GGACAGCACGCTCTCCACCAGCAGCACCGCGCCGCCTaGCCGCAGGGCACCCCGCACGCGCCGCAGCAGCTC +
Preference number: 6 (lower is better)
Translates to: GQHALHQQHRAA*PQGTPHAPQQL
Trigger: GAGCTGCTGCGGCGCGTGCGGGGTGCCCTGCGGCCAGGCGGCGCGGTGCTGCTGGTGGAGAGCGTGCTGTCC
78% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000178693.4
CDS CCA 72 bp GAAGCACACACGAGGCTCCGCCCCGTCCTCGTCCGCTaGGGGCGGGAAGTGGGCGCGGGCGGCAGCGACGAC +
Preference number: 6 (lower is better)
Translates to: EAHTRLRPVLVR*GREVGAGGSDD
Trigger: GTCGTCGCTGCCGCCCGCGCCCACTTCCCGCCCCCAGCGGACGAGGACGGGGCGGAGCCTCGTGTGTGCTTC
76% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000178693.4
CDS TCA 72 bp GTCGGCGGGCGGCAGCGGCGAGCGGAAGAAGTCGCCTaGCAGGAAGCACACACGAGGCTCCGCCCCGTCCTC +
Preference number: 6 (lower is better)
Translates to: VGGRQRRAEEVA*QEAHTRLRPVL
Trigger: GAGGACGGGGCGGAGCCTCGTGTGTGCTTCCTGTCAGGCGACTTCTTCCGCTCGCCGCTGCCGCCCGCCGAC
72% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000178693.4
CDS GCA 72 bp CGCCGTCCGCCAGGTGCCCCCAGCACAGGTAGGTGGTaGCCGCCAGGTAGAGCAGGAGGCTGCGCTGAGACA +
Preference number: 6 (lower is better)
Translates to: RRPPGAPSTGRW*PPGRAGGCAET
Trigger: TGTCTCAGCGCAGCCTCCTGCTCTACCTGGCGGGCACCACCTACCTGTGCTGGGGGCACCTGGCGGACGGCG
71% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000178693.4
CDS CCA 72 bp CAGCCCGCGAACAGCACCTGGGAGGCCATGAAGCCGTaGGCCAGGTCCATGAGGGCCCGGAAGTCGCGCTCC +
Preference number: 6 (lower is better)
Translates to: QPANSTWEAMKP*ARSMRARKSRS
Trigger: GGAGCGCGACTTCCGGGCCCTCATGGACCTGGCCCACGGCTTCATGGCCTCCCAGGTGCTGTTCGCGGGCTG
71% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000178693.4
CDS TCA 72 bp CCCCGCACAGGCTCCAGGTCTCCTGCAGGCCCCGCATaGACAGCAGGCGCTCGGCCTCCGACCTGTAGATGG +
Preference number: 6 (lower is better)
Translates to: PRTGSRSPAGPA*TAGARPPTCRW
Trigger: CCATCTACAGGTCGGAGGCCGAGCGCCTGCTGTTCATGCGGGGCCTGCAGGAGACCTGGAGCCTGTGCGGGG
69% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000178693.4