Pregenerated sensors for ASIC3 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000038276Ensembl transcript IDs: ENSMUST00000049346.10, ENSMUST00000196296.2, ENSMUST00000198442.2
Found 84 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR GCA 90 bp | GTAGGAGGCCTGGGGCCTAGGCTGAGATGGGGAACATGTGTTCGATaGCCATTCAACTCTTCCTGGAGCAGAGTGTTGCCAGAGCGCCTT | + |
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Preference number: 1 (lower is better) Translates to: VGGLGPRLRWGTCVR*PFNSSWSRVLPERL Trigger: AAGGCGCTCTGGCAACACTCTGCTCCAGGAAGAGTTGAATGGGCATCGAACACATGTTCCCCATCTCAGCCTAGGCCCCAGGCCTCCTAC 58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000198442.2 |
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| 3UTR GCA 90 bp | GAACATGTGTTCGATGCCCATTCAACTCTTCCTGGAGCAGAGTGTTaGCAGAGCGCCTTTGAGAGCTCCTTCTGTTCCAGAAGTACCCCA | + |
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Preference number: 1 (lower is better) Translates to: EHVFDAHSTLPGAEC*QSAFESSFCSRSTP Trigger: TGGGGTACTTCTGGAACAGAAGGAGCTCTCAAAGGCGCTCTGGCAACACTCTGCTCCAGGAAGAGTTGAATGGGCATCGAACACATGTTC 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000198442.2 |
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| 3UTR CAA 90 bp | GGGCATGTCCAAGATGTCACGGCGCAGCCAAGCAGGTCTAGAGCCTaGTCACGAGGTAACAGGTACGGTGGGAGGCAGCGAGTGTCTTGG | + |
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Preference number: 2 (lower is better) Translates to: GHVQDVTAQPSRSRA*SRGNRYGGRQRVSW Trigger: CCAAGACACTCGCTGCCTCCCACCGTACCTGTTACCTCGTGACAAGGCTCTAGACCTGCTTGGCTGCGCCGTGACATCTTGGACATGCCC 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000049346.10 ENSMUST00000198442.2 |
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| 3UTR-3UTR TCA 90 bp | TGTCACGAGGTAACAGGTACGGTGGGAGGCAGCGAGTGTCTTGGTGACAGCACTGCCTGGGGCCTAGGCTaGGATGGGGAACATGTGTTC | + |
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Preference number: 2 (lower is better) Translates to: CHEVTGTVGGSECLGDSTAWGLG*DGEHVF Trigger: GAACACATGTTCCCCATCTCAGCCTAGGCCCCAGGC...AGTGCTGTCACCAAGACACTCGCTGCCTCCCACCGTACCTGTTACCTCGTGACA 59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000049346.10 ENSMUST00000198442.2 |
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| 3UTR-3UTR CCA 90 bp | CGGCGCAGCCAAGCAGGTCTAGAGCCTTGTCACGAGGTAACAGGTACGGTGGGACAAAGATGTACAGCCTaGGCATGTCCAAGATGTCAC | + |
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Preference number: 2 (lower is better) Translates to: RRSQAGLEPCHEVTGTVGQRCTA*ACPRCH Trigger: GTGACATCTTGGACATGCCCAGGCTGTACATCTTTG...TCCCACCGTACCTGTTACCTCGTGACAAGGCTCTAGACCTGCTTGGCTGCGCCG 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000049346.10 ENSMUST00000198442.2 |
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| 3UTR-3UTR TCA 90 bp | ATTAGGGTAAAGAAGGCAAAGATGTACAGCCTGGGCATGTCCAAGATGTCACGGGCCTGGGGCCTAGGCTaGGATGGGGAACATGTGTTC | + |
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Preference number: 2 (lower is better) Translates to: IRVKKAKMYSLGMSKMSRAWGLG*DGEHVF Trigger: GAACACATGTTCCCCATCTCAGCCTAGGCCCCAGGC...CCGTGACATCTTGGACATGCCCAGGCTGTACATCTTTGCCTTCTTTACCCTAAT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000049346.10 ENSMUST00000198442.2 |
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| 3UTR CCA 72 bp | CTGGGAGCGGTAGGAGGCCTGGGGCCTAGGCTGAGATaGGGAACATGTGTTCGATGCCCATTCAACTCTTCC | + |
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Preference number: 3 (lower is better) Translates to: LGAVGGLGPRLR*GTCVRCPFNSS Trigger: GGAAGAGTTGAATGGGCATCGAACACATGTTCCCCATCTCAGCCTAGGCCCCAGGCCTCCTACCGCTCCCAG 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000198442.2 |
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| 3UTR-3UTR CAA 90 bp | AGCAGGTCTAGAGCCTTGTCACGAGGTAACAGGTACGGTGGGAGGCAGCGAGTGAGCAGGTCTAGAGCCTaGTCACGAGGTAACAGGTAC | + |
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Preference number: 3 (lower is better) Translates to: SRSRALSRGNRYGGRQRVSRSRA*SRGNRY Trigger: GTACCTGTTACCTCGTGACAAGGCTCTAGACCTGCT...CACTCGCTGCCTCCCACCGTACCTGTTACCTCGTGACAAGGCTCTAGACCTGCT 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000049346.10 ENSMUST00000198442.2 |
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| 3UTR TCA 72 bp | AACTCTTCCTGGAGCAGAGTGTTGCCAGAGCGCCTTTaGGAGCTCCTTCTGTTCCAGAAGTACCCCAGGACT | + |
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Preference number: 3 (lower is better) Translates to: NSSWSRVLPERL*ELLLFQKYPRT Trigger: AGTCCTGGGGTACTTCTGGAACAGAAGGAGCTCTCAAAGGCGCTCTGGCAACACTCTGCTCCAGGAAGAGTT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000198442.2 |
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| 3UTR GCA 72 bp | TTCGATGCCCATTCAACTCTTCCTGGAGCAGAGTGTTaGCAGAGCGCCTTTGAGAGCTCCTTCTGTTCCAGA | + |
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Preference number: 3 (lower is better) Translates to: FDAHSTLPGAEC*QSAFESSFCSR Trigger: TCTGGAACAGAAGGAGCTCTCAAAGGCGCTCTGGCAACACTCTGCTCCAGGAAGAGTTGAATGGGCATCGAA 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000198442.2 |
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| 3UTR-3UTR CAA 90 bp | GATGGGGAACATGTGTTCGATGCCCATTCAACTCTTCCTGGAGCAGAGTGTTGCCCCCAGGACTCTGTCTaGAAAAACCTTCTGCACCTC | + |
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Preference number: 3 (lower is better) Translates to: DGEHVFDAHSTLPGAECCPQDSV*KNLLHL Trigger: GAGGTGCAGAAGGTTTTTCAAGACAGAGTCCTGGGG...GCAACACTCTGCTCCAGGAAGAGTTGAATGGGCATCGAACACATGTTCCCCATC 52% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt. Matches the following 1 transcripts: ENSMUST00000198442.2 |
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| 3UTR-3UTR CAA 90 bp | ATTAGGGTAAAGAAGGCAAAGATGTACAGCCTGGGCATGTCCAAGATGTCACGGGTTGCCAGAGCGCCTTaGAGAGCTCCTTCTGTTCCA | + |
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Preference number: 3 (lower is better) Translates to: IRVKKAKMYSLGMSKMSRVARAP*RAPSVP Trigger: TGGAACAGAAGGAGCTCTCAAAGGCGCTCTGGCAAC...CCGTGACATCTTGGACATGCCCAGGCTGTACATCTTTGCCTTCTTTACCCTAAT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000198442.2 |
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| CDS-3UTR TCA 90 bp | CGCAGCCAAGCAGGTCTAGAGCCTTGTCACGAGGTAACAGGTACGGTGGGAGGCGCAAGTCATTGGGTGTaGGGCGTGAGCGGCGCAGGG | + |
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Preference number: 4 (lower is better) Translates to: RSQAGLEPCHEVTGTVGGASHWV*GVSGAG Trigger: CCCTGCGCCGCTCACGCCTCACACCCAATGACTTGC...GCCTCCCACCGTACCTGTTACCTCGTGACAAGGCTCTAGACCTGCTTGGCTGCG 63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000049346.10 |
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| CDS-3UTR GCA 90 bp | GCAGGTCTAGAGCCTTGTCACGAGGTAACAGGTACGGTGGGAGGCAGCGAGTGTCATGAAGCCAGGTGGTaGAGGGGGCTGGCCCAGGGC | + |
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Preference number: 4 (lower is better) Translates to: AGLEPCHEVTGTVGGSECHEARW*RGLAQG Trigger: GCCCTGGGCCAGCCCCCTGCACCACCTGGCTTCATG...ACACTCGCTGCCTCCCACCGTACCTGTTACCTCGTGACAAGGCTCTAGACCTGC 63% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000049346.10 |
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| CDS-3UTR CCA 90 bp | TCACGGCGCAGCCAAGCAGGTCTAGAGCCTTGTCACGAGGTAACAGGTACGGTGGAGGCCTGTCGCCGCTaGGCCTCCTCCAGTCCTGAG | + |
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Preference number: 4 (lower is better) Translates to: SRRSQAGLEPCHEVTGTVEACRR*ASSSPE Trigger: CTCAGGACTGGAGGAGGCCCAGCGGCGACAGGCCTC...CACCGTACCTGTTACCTCGTGACAAGGCTCTAGACCTGCTTGGCTGCGCCGTGA 63% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000049346.10 |
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| CDS-3UTR CCA 90 bp | ACGGCGCAGCCAAGCAGGTCTAGAGCCTTGTCACGAGGTAACAGGTACGGTGGGACAGGAGTACAGCTGTaGCCCACAGCCCACGGCGCA | + |
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Preference number: 4 (lower is better) Translates to: TAQPSRSRALSRGNRYGGTGVQL*PTAHGA Trigger: TGCGCCGTGGGCTGTGGGCCACAGCTGTACTCCTGT...CCCACCGTACCTGTTACCTCGTGACAAGGCTCTAGACCTGCTTGGCTGCGCCGT 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000049346.10 |
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| CDS-3UTR TCA 90 bp | GCAGGTCTAGAGCCTTGTCACGAGGTAACAGGTACGGTGGGAGGCAGCGAGTGTCCGAGCCACATAGCGTaGCTCACAGGCCAGGCGACA | + |
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Preference number: 4 (lower is better) Translates to: AGLEPCHEVTGTVGGSECPSHIA*LTGQAT Trigger: TGTCGCCTGGCCTGTGAGTCACGCTATGTGGCTCGG...ACACTCGCTGCCTCCCACCGTACCTGTTACCTCGTGACAAGGCTCTAGACCTGC 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000049346.10 |
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| CDS-3UTR CCA 90 bp | AGCCAAGCAGGTCTAGAGCCTTGTCACGAGGTAACAGGTACGGTGGGAGGCAGCGGTTCCTCCTGGCCGTaGATCTGCACTCGGATCCCC | + |
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Preference number: 4 (lower is better) Translates to: SQAGLEPCHEVTGTVGGSGSSWP*ICTRIP Trigger: GGGGATCCGAGTGCAGATCCACGGCCAGGAGGAACC...GCTGCCTCCCACCGTACCTGTTACCTCGTGACAAGGCTCTAGACCTGCTTGGCT 61% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000049346.10 |
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| CDS-3UTR CCA 90 bp | ACGGCGCAGCCAAGCAGGTCTAGAGCCTTGTCACGAGGTAACAGGTACGGTGGGAAAAGTCTGGTGGCCTaGGGCAGCACCGAAGCCCAG | + |
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Preference number: 4 (lower is better) Translates to: TAQPSRSRALSRGNRYGGKSLVA*GSTEAQ Trigger: CTGGGCTTCGGTGCTGCCCCAGGCCACCAGACTTTT...CCCACCGTACCTGTTACCTCGTGACAAGGCTCTAGACCTGCTTGGCTGCGCCGT 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000049346.10 |
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| CDS-3UTR GCA 90 bp | GTCACGGCGCAGCCAAGCAGGTCTAGAGCCTTGTCACGAGGTAACAGGTACGGTGCACAGTCCTTGTACTaGTGGGGGCTGCACACTGGG | + |
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Preference number: 4 (lower is better) Translates to: VTAQPSRSRALSRGNRYGAQSLY*WGLHTG Trigger: CCCAGTGTGCAGCCCCCAGCAGTACAAGGACTGTGC...ACCGTACCTGTTACCTCGTGACAAGGCTCTAGACCTGCTTGGCTGCGCCGTGAC 60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000049346.10 |
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| CDS-3UTR CCA 90 bp | AGGTCTAGAGCCTTGTCACGAGGTAACAGGTACGGTGGGAGGCAGCGAGTGTCTAGCCCAGCTGGTCAATaGCAGGGGGTTCCTCCTGGC | + |
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Preference number: 4 (lower is better) Translates to: RSRALSRGNRYGGRQRVSSPAGQ*QGVPPG Trigger: GCCAGGAGGAACCCCCTGCCATTGACCAGCTGGGCT...AGACACTCGCTGCCTCCCACCGTACCTGTTACCTCGTGACAAGGCTCTAGACCT 60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000049346.10 |
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| CDS-3UTR CCA 90 bp | CGGCGCAGCCAAGCAGGTCTAGAGCCTTGTCACGAGGTAACAGGTACGGTGGGAGCAGTCACCCCAGGGTaGTGGCAGGAAACTCAGTTG | + |
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Preference number: 4 (lower is better) Translates to: RRSQAGLEPCHEVTGTVGAVTPG*WQETQL Trigger: CAACTGAGTTTCCTGCCACCACCCTGGGGTGACTGC...TCCCACCGTACCTGTTACCTCGTGACAAGGCTCTAGACCTGCTTGGCTGCGCCG 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000049346.10 |
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| CDS-3UTR CCA 90 bp | GTCACGGCGCAGCCAAGCAGGTCTAGAGCCTTGTCACGAGGTAACAGGTACGGTCAGTCCTTGTACTGCTaGGGGCTGCACACTGGGGAG | + |
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Preference number: 4 (lower is better) Translates to: VTAQPSRSRALSRGNRYGQSLYC*GLHTGE Trigger: CTCCCCAGTGTGCAGCCCCCAGCAGTACAAGGACTG...ACCGTACCTGTTACCTCGTGACAAGGCTCTAGACCTGCTTGGCTGCGCCGTGAC 60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000049346.10 |
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| CDS-3UTR CCA 90 bp | AGCAGGTCTAGAGCCTTGTCACGAGGTAACAGGTACGGTGGGAGGCAGCGAGTGGAGCTGAAGCGCGGCTaGGAATCCGCACCATGGAGA | + |
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Preference number: 4 (lower is better) Translates to: SRSRALSRGNRYGGRQRVELKRG*ESAPWR Trigger: TCTCCATGGTGCGGATTCCCAGCCGCGCTTCAGCTC...CACTCGCTGCCTCCCACCGTACCTGTTACCTCGTGACAAGGCTCTAGACCTGCT 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000198442.2 |
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| 3UTR CAA 72 bp | CAAGATGTCACGGCGCAGCCAAGCAGGTCTAGAGCCTaGTCACGAGGTAACAGGTACGGTGGGAGGCAGCGA | + |
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Preference number: 4 (lower is better) Translates to: QDVTAQPSRSRA*SRGNRYGGRQR Trigger: TCGCTGCCTCCCACCGTACCTGTTACCTCGTGACAAGGCTCTAGACCTGCTTGGCTGCGCCGTGACATCTTG 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000049346.10 ENSMUST00000198442.2 |
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| CDS-3UTR TCA 90 bp | GGTCTAGAGCCTTGTCACGAGGTAACAGGTACGGTGGGAGGCAGCGAGTGTCTTATTGGGTGTGAGGCGTaGGCGGCGCAGGGGATTGAT | + |
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Preference number: 4 (lower is better) Translates to: GLEPCHEVTGTVGGSECLIGCEA*AAQGID Trigger: ATCAATCCCCTGCGCCGCTCACGCCTCACACCCAAT...AAGACACTCGCTGCCTCCCACCGTACCTGTTACCTCGTGACAAGGCTCTAGACC 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000049346.10 |
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| CDS-3UTR GCA 90 bp | AGGTCTAGAGCCTTGTCACGAGGTAACAGGTACGGTGGGAGGCAGCGAGTGTCTTCCTGGCCGTGGATCTaGACTCGGATCCCCACCTCA | + |
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Preference number: 4 (lower is better) Translates to: RSRALSRGNRYGGRQRVSSWPWI*TRIPTS Trigger: TGAGGTGGGGATCCGAGTGCAGATCCACGGCCAGGA...AGACACTCGCTGCCTCCCACCGTACCTGTTACCTCGTGACAAGGCTCTAGACCT 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000049346.10 |
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| CDS-3UTR GCA 90 bp | GCGGTAGGAGGCCTGGGGCCTAGGCTGAGATGGGGAACATGTGTTCGATGCCCAGGCAGGAAACTCAGTTaGTGTTGCTGGCAGGACACA | + |
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Preference number: 4 (lower is better) Translates to: AVGGLGPRLRWGTCVRCPGRKLS*CCWQDT Trigger: TGTGTCCTGCCAGCAACAGCAACTGAGTTTCCTGCC...TGGGCATCGAACACATGTTCCCCATCTCAGCCTAGGCCCCAGGCCTCCTACCGC 59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000049346.10 |
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| CDS-3UTR GCA 90 bp | AGCCAAGCAGGTCTAGAGCCTTGTCACGAGGTAACAGGTACGGTGGGAGGCAGCTGTACTGCTGGGGGCTaGACACTGGGGAGTTTCCAG | + |
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Preference number: 4 (lower is better) Translates to: SQAGLEPCHEVTGTVGGSCTAGG*TLGSFQ Trigger: CTGGAAACTCCCCAGTGTGCAGCCCCCAGCAGTACA...GCTGCCTCCCACCGTACCTGTTACCTCGTGACAAGGCTCTAGACCTGCTTGGCT 59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000049346.10 |
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| CDS-3UTR CCA 90 bp | TCACGGCGCAGCCAAGCAGGTCTAGAGCCTTGTCACGAGGTAACAGGTACGGTGGCTGGGAAGGTAAGCTaGTGGCTCTCACGCTCATCC | + |
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Preference number: 4 (lower is better) Translates to: SRRSQAGLEPCHEVTGTVAGKVS*WLSRSS Trigger: GGATGAGCGTGAGAGCCACCAGCTTACCTTCCCAGC...CACCGTACCTGTTACCTCGTGACAAGGCTCTAGACCTGCTTGGCTGCGCCGTGA 59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000049346.10 |
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| CDS-3UTR CCA 90 bp | AGGTCTAGAGCCTTGTCACGAGGTAACAGGTACGGTGGGAGGCAGCGAGTGTCTAGCAGCTCTGCCCCCTaGGCACCAGAGTTGAAGGTG | + |
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Preference number: 4 (lower is better) Translates to: RSRALSRGNRYGGRQRVSSSSAP*APELKV Trigger: CACCTTCAACTCTGGTGCCCAGGGGGCAGAGCTGCT...AGACACTCGCTGCCTCCCACCGTACCTGTTACCTCGTGACAAGGCTCTAGACCT 59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000049346.10 |
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| CDS-3UTR CCA 90 bp | CAGCCAAGCAGGTCTAGAGCCTTGTCACGAGGTAACAGGTACGGTGGGAGGCAGGTCACCCCAGGGTGGTaGCAGGAAACTCAGTTGCTG | + |
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Preference number: 4 (lower is better) Translates to: QPSRSRALSRGNRYGGRQVTPGW*QETQLL Trigger: CAGCAACTGAGTTTCCTGCCACCACCCTGGGGTGAC...CTGCCTCCCACCGTACCTGTTACCTCGTGACAAGGCTCTAGACCTGCTTGGCTG 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000049346.10 |
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| CDS-3UTR GCA 90 bp | GCAGGTCTAGAGCCTTGTCACGAGGTAACAGGTACGGTGGGAGGCAGCGAGTGTATGTGGCCCAAACCATaGATCGTGCAGCTGTTGGCG | + |
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Preference number: 4 (lower is better) Translates to: AGLEPCHEVTGTVGGSECMWPKP*IVQLLA Trigger: CGCCAACAGCTGCACGATGCATGGTTTGGGCCACAT...ACACTCGCTGCCTCCCACCGTACCTGTTACCTCGTGACAAGGCTCTAGACCTGC 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000049346.10 |
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| CDS-3UTR CCA 90 bp | GGTCTAGAGCCTTGTCACGAGGTAACAGGTACGGTGGGAGGCAGCGAGTGTCTTGGGAAGGTAAGCTGGTaGCTCTCACGCTCATCCAGG | + |
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Preference number: 4 (lower is better) Translates to: GLEPCHEVTGTVGGSECLGKVSW*LSRSSR Trigger: CCTGGATGAGCGTGAGAGCCACCAGCTTACCTTCCC...AAGACACTCGCTGCCTCCCACCGTACCTGTTACCTCGTGACAAGGCTCTAGACC 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000049346.10 |
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| CDS-3UTR CCA 90 bp | AGCCAAGCAGGTCTAGAGCCTTGTCACGAGGTAACAGGTACGGTGGGAGGCAGCGGGATCAGAGGGCTCTaGATCAAAGTCGGGATCCAC | + |
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Preference number: 4 (lower is better) Translates to: SQAGLEPCHEVTGTVGGSGIRGL*IKVGIH Trigger: GTGGATCCCGACTTTGATCCAGAGCCCTCTGATCCC...GCTGCCTCCCACCGTACCTGTTACCTCGTGACAAGGCTCTAGACCTGCTTGGCT 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000049346.10 |
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| CDS-3UTR CCA 90 bp | GCAGGTCTAGAGCCTTGTCACGAGGTAACAGGTACGGTGGGAGGCAGCGAGTGTCATTCTCCCCAGAGCTaGGCTGGCACAGTCCTTGTA | + |
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Preference number: 4 (lower is better) Translates to: AGLEPCHEVTGTVGGSECHSPQS*AGTVLV Trigger: TACAAGGACTGTGCCAGCCCAGCTCTGGGGAGAATG...ACACTCGCTGCCTCCCACCGTACCTGTTACCTCGTGACAAGGCTCTAGACCTGC 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000049346.10 |
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| CDS-3UTR GCA 90 bp | CGGCGCAGCCAAGCAGGTCTAGAGCCTTGTCACGAGGTAACAGGTACGGTGGGACGACACTTCATAAGCTaGCTTTTGTTCCACGGCCTC | + |
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Preference number: 4 (lower is better) Translates to: RRSQAGLEPCHEVTGTVGRHFIS*LLFHGL Trigger: GAGGCCGTGGAACAAAAGGCAGCTTATGAAGTGTCG...TCCCACCGTACCTGTTACCTCGTGACAAGGCTCTAGACCTGCTTGGCTGCGCCG 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000049346.10 ENSMUST00000198442.2 |
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| CDS-3UTR CCA 90 bp | GGTCTAGAGCCTTGTCACGAGGTAACAGGTACGGTGGGAGGCAGCGAGTGTCTTCACGCTCATCCAGGGTaGTCTTATGGTGGAACTCCC | + |
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Preference number: 4 (lower is better) Translates to: GLEPCHEVTGTVGGSECLHAHPG*SYGGTP Trigger: GGGAGTTCCACCATAAGACCACCCTGGATGAGCGTG...AAGACACTCGCTGCCTCCCACCGTACCTGTTACCTCGTGACAAGGCTCTAGACC 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000049346.10 |
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| CDS-3UTR CCA 90 bp | CGGCGCAGCCAAGCAGGTCTAGAGCCTTGTCACGAGGTAACAGGTACGGTGGGACTCAGTTGCTGTTGCTaGCAGGACACAAAAGTCTGG | + |
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Preference number: 4 (lower is better) Translates to: RRSQAGLEPCHEVTGTVGLSCCC*QDTKVW Trigger: CCAGACTTTTGTGTCCTGCCAGCAACAGCAACTGAG...TCCCACCGTACCTGTTACCTCGTGACAAGGCTCTAGACCTGCTTGGCTGCGCCG 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000049346.10 |
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| CDS-3UTR GCA 90 bp | GCGGTAGGAGGCCTGGGGCCTAGGCTGAGATGGGGAACATGTGTTCGATGCCCAAAACTCAGTTGCTGTTaGTGGCAGGACACAAAAGTC | + |
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Preference number: 4 (lower is better) Translates to: AVGGLGPRLRWGTCVRCPKLSCC*WQDTKV Trigger: GACTTTTGTGTCCTGCCAGCAACAGCAACTGAGTTT...TGGGCATCGAACACATGTTCCCCATCTCAGCCTAGGCCCCAGGCCTCCTACCGC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt. Matches the following 1 transcripts: ENSMUST00000049346.10 |
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| CDS-3UTR CCA 90 bp | AGCAGGTCTAGAGCCTTGTCACGAGGTAACAGGTACGGTGGGAGGCAGCGAGTGGATCCCCACCTCAAATaGGGTCTCTTCCATGTCCTT | + |
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Preference number: 4 (lower is better) Translates to: SRSRALSRGNRYGGRQRVDPHLK*GLFHVL Trigger: AAGGACATGGAAGAGACCCCATTTGAGGTGGGGATC...CACTCGCTGCCTCCCACCGTACCTGTTACCTCGTGACAAGGCTCTAGACCTGCT 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000049346.10 |
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| 3UTR CAA 72 bp | CAACTCTTCCTGGAGCAGAGTGTTGCCAGAGCGCCTTaGAGAGCTCCTTCTGTTCCAGAAGTACCCCAGGAC | + |
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Preference number: 4 (lower is better) Translates to: QLFLEQSVARAP*RAPSVPEVPQD Trigger: GTCCTGGGGTACTTCTGGAACAGAAGGAGCTCTCAAAGGCGCTCTGGCAACACTCTGCTCCAGGAAGAGTTG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000198442.2 |
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| CDS-3UTR TCA 90 bp | ATTAGGGTAAAGAAGGCAAAGATGTACAGCCTGGGCATGTCCAAGATGTCACGGAAGTCGGACTGGGCATaGAGCCAGGTGGTGCAGGGG | + |
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Preference number: 4 (lower is better) Translates to: IRVKKAKMYSLGMSKMSRKSDWA*SQVVQG Trigger: CCCCTGCACCACCTGGCTTCATGCCCAGTCCGACTT...CCGTGACATCTTGGACATGCCCAGGCTGTACATCTTTGCCTTCTTTACCCTAAT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000049346.10 |
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| CDS-3UTR TCA 90 bp | GTCACGGCGCAGCCAAGCAGGTCTAGAGCCTTGTCACGAGGTAACAGGTACGGTCCACGGCCTCATAGTTaGGGGCTTCAAAGAAGATAT | + |
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Preference number: 4 (lower is better) Translates to: VTAQPSRSRALSRGNRYGPRPHS*GLQRRY Trigger: ATATCTTCTTTGAAGCCCTCAACTATGAGGCCGTGG...ACCGTACCTGTTACCTCGTGACAAGGCTCTAGACCTGCTTGGCTGCGCCGTGAC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000049346.10 ENSMUST00000198442.2 |
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| CDS-3UTR CCA 90 bp | TGTCACGAGGTAACAGGTACGGTGGGAGGCAGCGAGTGTCTTGGTGACAGCACTACACAAAGTGACAGCTaGGAAGGTAAGCTGGTGGCT | + |
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Preference number: 4 (lower is better) Translates to: CHEVTGTVGGSECLGDSTTQSDS*EGKLVA Trigger: AGCCACCAGCTTACCTTCCCAGCTGTCACTTTGTGT...AGTGCTGTCACCAAGACACTCGCTGCCTCCCACCGTACCTGTTACCTCGTGACA 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000049346.10 |
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| CDS-3UTR CCA 90 bp | ACATGTGTTCGATGCCCATTCAACTCTTCCTGGAGCAGAGTGTTGCCAGAGCGCTGGGAATCCGCACCATaGAGAGCTCCTTGGCATAGC | + |
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Preference number: 4 (lower is better) Translates to: TCVRCPFNSSWSRVLPERWESAP*RAPWHS Trigger: GCTATGCCAAGGAGCTCTCCATGGTGCGGATTCCCA...GCGCTCTGGCAACACTCTGCTCCAGGAAGAGTTGAATGGGCATCGAACACATGT 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000198442.2 |
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| CDS-3UTR CCA 90 bp | AGGGTAAAGAAGGCAAAGATGTACAGCCTGGGCATGTCCAAGATGTCACGGCGCCCATGTCCTTCCAGATaGGCAGATACTCCTCCTGCT | + |
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Preference number: 4 (lower is better) Translates to: RVKKAKMYSLGMSKMSRRPCPSR*ADTPPA Trigger: AGCAGGAGGAGTATCTGCCCATCTGGAAGGACATGG...GCGCCGTGACATCTTGGACATGCCCAGGCTGTACATCTTTGCCTTCTTTACCCT 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000049346.10 |
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| CDS-3UTR GCA 90 bp | CATTCAACTCTTCCTGGAGCAGAGTGTTGCCAGAGCGCCTTTGAGAGCTCCTTCCGACACTTCATAAGCTaGCTTTTGTTCCACGGCCTC | + |
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Preference number: 4 (lower is better) Translates to: HSTLPGAECCQSAFESSFRHFIS*LLFHGL Trigger: GAGGCCGTGGAACAAAAGGCAGCTTATGAAGTGTCG...GAAGGAGCTCTCAAAGGCGCTCTGGCAACACTCTGCTCCAGGAAGAGTTGAATG 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000198442.2 |
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| CDS CCA 90 bp | CAGCCACCTGGTAGAGGAAGGCCGCCAGCGACAGGAGTACAGCTGTaGCCCACAGCCCACGGCGCAGGGTCAGGCCTCCAGGGCCAAAGA | + |
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Preference number: 5 (lower is better) Translates to: QPPGRGRPPATGVQL*PTAHGAGSGLQGQR Trigger: TCTTTGGCCCTGGAGGCCTGACCCTGCGCCGTGGGCTGTGGGCCACAGCTGTACTCCTGTCGCTGGCGGCCTTCCTCTACCAGGTGGCTG 68% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000049346.10 ENSMUST00000196296.2 |
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| CDS TCA 90 bp | CGGCTCTGGCGTAGAGTTGTGCCATGTCAAAAGTCGGACTGGGCATaGAGCCAGGTGGTGCAGGGGGCTGGCCCAGGGCACGAAGGTAGG | + |
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Preference number: 5 (lower is better) Translates to: RLWRRVVPCQKSDWA*SQVVQGAGPGHEGR Trigger: CCTACCTTCGTGCCCTGGGCCAGCCCCCTGCACCACCTGGCTTCATGCCCAGTCCGACTTTTGACATGGCACAACTCTACGCCAGAGCCG 63% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000049346.10 ENSMUST00000196296.2 |
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| CDS GCA 90 bp | GCATGTTCAGCAGGGTCCAGACCCAGCAGTGCCGTTCCGGCCCAGTaGAAGTCATTGGGTGTGAGGCGTGAGCGGCGCAGGGGATTGATG | + |
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Preference number: 5 (lower is better) Translates to: ACSAGSRPSSAVPAQ*KSLGVRRERRRGLM Trigger: CATCAATCCCCTGCGCCGCTCACGCCTCACACCCAATGACTTGCACTGGGCCGGAACGGCACTGCTGGGTCTGGACCCTGCTGAACATGC 63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000049346.10 ENSMUST00000196296.2 |
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| CDS-3UTR CAA 90 bp | AGCAGGTCTAGAGCCTTGTCACGAGGTAACAGGTACGGTGGGAGGCAGCGAGTGGGGCTGGCACAGTCCTaGTACTGCTGGGGGCTGCAC | + |
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Preference number: 5 (lower is better) Translates to: SRSRALSRGNRYGGRQRVGLAQS*YCWGLH Trigger: GTGCAGCCCCCAGCAGTACAAGGACTGTGCCAGCCC...CACTCGCTGCCTCCCACCGTACCTGTTACCTCGTGACAAGGCTCTAGACCTGCT 62% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000049346.10 |
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| CDS GCA 90 bp | GAGTTGTGCCATGTCAAAAGTCGGACTGGGCATGAAGCCAGGTGGTaGAGGGGGCTGGCCCAGGGCACGAAGGTAGGCAGCATGTTCAGC | + |
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Preference number: 5 (lower is better) Translates to: ELCHVKSRTGHEARW*RGLAQGTKVGSMFS Trigger: GCTGAACATGCTGCCTACCTTCGTGCCCTGGGCCAGCCCCCTGCACCACCTGGCTTCATGCCCAGTCCGACTTTTGACATGGCACAACTC 61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000049346.10 ENSMUST00000196296.2 |
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| CDS GCA 90 bp | CTCCAGTCCATTGCCAGCACCGCCCTTAGGAGTGGTGAGCAGCTCTaGCCCCTGGGCACCAGAGTTGAAGGTGTAGCATTGCCCCATTCG | + |
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Preference number: 5 (lower is better) Translates to: LQSIASTALRSGEQL*PLGTRVEGVALPHS Trigger: CGAATGGGGCAATGCTACACCTTCAACTCTGGTGCCCAGGGGGCAGAGCTGCTCACCACTCCTAAGGGCGGTGCTGGCAATGGACTGGAG 61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000049346.10 ENSMUST00000196296.2 |
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| CDS GCA 90 bp | CAGCAACATGTCCTCAAGGGAGTGGCCGGCTCTGGCGTAGAGTTGTaGCATGTCAAAAGTCGGACTGGGCATGAAGCCAGGTGGTGCAGG | + |
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Preference number: 5 (lower is better) Translates to: QQHVLKGVAGSGVEL*HVKSRTGHEARWCR Trigger: CCTGCACCACCTGGCTTCATGCCCAGTCCGACTTTTGACATGGCACAACTCTACGCCAGAGCCGGCCACTCCCTTGAGGACATGTTGCTG 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000049346.10 ENSMUST00000196296.2 |
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| CDS GCA 90 bp | ACCCAGGGGATCAGAGGGCTCTGGATCAAAGTCGGGATCCACAGATaGGGTATTGCAGTCACCCCAGGGTGGTGGCAGGAAACTCAGTTG | + |
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Preference number: 5 (lower is better) Translates to: TQGIRGLWIKVGIHR*GIAVTPGWWQETQL Trigger: CAACTGAGTTTCCTGCCACCACCCTGGGGTGACTGCAATACCGCATCTGTGGATCCCGACTTTGATCCAGAGCCCTCTGATCCCCTGGGT 58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000049346.10 ENSMUST00000196296.2 |
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| CDS-3UTR CAA 90 bp | GAGGTAACAGGTACGGTGGGAGGCAGCGAGTGTCTTGGTGACAGCACTGGGAGCGAGCGGCGCAGGGGATaGATGTTACACAAAGTGACA | + |
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Preference number: 5 (lower is better) Translates to: EVTGTVGGSECLGDSTGSERRRG*MLHKVT Trigger: TGTCACTTTGTGTAACATCAATCCCCTGCGCCGCTC...GCTCCCAGTGCTGTCACCAAGACACTCGCTGCCTCCCACCGTACCTGTTACCTC 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000049346.10 |
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| CDS GCA 90 bp | GATCAGAGGGCTCTGGATCAAAGTCGGGATCCACAGATGCGGTATTaGAGTCACCCCAGGGTGGTGGCAGGAAACTCAGTTGCTGTTGCT | + |
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Preference number: 5 (lower is better) Translates to: DQRALDQSRDPQMRY*SHPRVVAGNSVAVA Trigger: AGCAACAGCAACTGAGTTTCCTGCCACCACCCTGGGGTGACTGCAATACCGCATCTGTGGATCCCGACTTTGATCCAGAGCCCTCTGATC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000049346.10 ENSMUST00000196296.2 |
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| CDS CCA 90 bp | CCCATTCGAGTGAAAATCACTGTGAAGTTCTCAGGTCCACAGGGCTaGCCACGGTATCGGCAGTCCAGCAACATGTCCTCAAGGGAGTGG | + |
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Preference number: 5 (lower is better) Translates to: PIRVKITVKFSGPQG*PRYRQSSNMSSREW Trigger: CCACTCCCTTGAGGACATGTTGCTGGACTGCCGATACCGTGGCCAGCCCTGTGGACCTGAGAACTTCACAGTGATTTTCACTCGAATGGG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000049346.10 ENSMUST00000196296.2 |
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| CDS-3UTR CAA 90 bp | GCAGGTCTAGAGCCTTGTCACGAGGTAACAGGTACGGTGGGAGGCAGCGAGTGTCCCCAGGACTCTGTCTaGAAAAACCTCACAGAGGTA | + |
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Preference number: 5 (lower is better) Translates to: AGLEPCHEVTGTVGGSECPQDSV*KNLTEV Trigger: TACCTCTGTGAGGTTTTTCAAGACAGAGTCCTGGGG...ACACTCGCTGCCTCCCACCGTACCTGTTACCTCGTGACAAGGCTCTAGACCTGC 56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000049346.10 |
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| CDS CCA 90 bp | AAAGTCGGGATCCACAGATGCGGTATTGCAGTCACCCCAGGGTGGTaGCAGGAAACTCAGTTGCTGTTGCTGGCAGGACACAAAAGTCTG | + |
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Preference number: 5 (lower is better) Translates to: KVGIHRCGIAVTPGW*QETQLLLLAGHKSL Trigger: CAGACTTTTGTGTCCTGCCAGCAACAGCAACTGAGTTTCCTGCCACCACCCTGGGGTGACTGCAATACCGCATCTGTGGATCCCGACTTT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000049346.10 ENSMUST00000196296.2 |
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| CDS-3UTR CAA 90 bp | AGGGTAAAGAAGGCAAAGATGTACAGCCTGGGCATGTCCAAGATGTCACGGCGCGTTGCCAGAGCGCCTTaGAGAGCTCCTTCTGTTCCA | + |
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Preference number: 5 (lower is better) Translates to: RVKKAKMYSLGMSKMSRRVARAP*RAPSVP Trigger: TGGAACAGAAGGAGCTCTCAAAGGCGCTCTGGCAAC...GCGCCGTGACATCTTGGACATGCCCAGGCTGTACATCTTTGCCTTCTTTACCCT 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000049346.10 |
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| CDS CCA 90 bp | ATCAAAGTCGGGATCCACAGATGCGGTATTGCAGTCACCCCAGGGTaGTGGCAGGAAACTCAGTTGCTGTTGCTGGCAGGACACAAAAGT | + |
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Preference number: 5 (lower is better) Translates to: IKVGIHRCGIAVTPG*WQETQLLLLAGHKS Trigger: ACTTTTGTGTCCTGCCAGCAACAGCAACTGAGTTTCCTGCCACCACCCTGGGGTGACTGCAATACCGCATCTGTGGATCCCGACTTTGAT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000049346.10 ENSMUST00000196296.2 |
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| CDS-3UTR CAA 90 bp | ATTAGGGTAAAGAAGGCAAAGATGTACAGCCTGGGCATGTCCAAGATGTCACGGGAAACTCAGTTGCTGTaGCTGGCAGGACACAAAAGT | + |
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Preference number: 5 (lower is better) Translates to: IRVKKAKMYSLGMSKMSRETQLL*LAGHKS Trigger: ACTTTTGTGTCCTGCCAGCAACAGCAACTGAGTTTC...CCGTGACATCTTGGACATGCCCAGGCTGTACATCTTTGCCTTCTTTACCCTAAT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000049346.10 |
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| CDS CCA 72 bp | GGTAGAGGAAGGCCGCCAGCGACAGGAGTACAGCTGTaGCCCACAGCCCACGGCGCAGGGTCAGGCCTCCAG | + |
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Preference number: 6 (lower is better) Translates to: GRGRPPATGVQL*PTAHGAGSGLQ Trigger: CTGGAGGCCTGACCCTGCGCCGTGGGCTGTGGGCCACAGCTGTACTCCTGTCGCTGGCGGCCTTCCTCTACC 69% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000049346.10 ENSMUST00000196296.2 |
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| CDS GCA 72 bp | GCAGGGTCCAGACCCAGCAGTGCCGTTCCGGCCCAGTaGAAGTCATTGGGTGTGAGGCGTGAGCGGCGCAGG | + |
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Preference number: 6 (lower is better) Translates to: AGSRPSSAVPAQ*KSLGVRRERRR Trigger: CCTGCGCCGCTCACGCCTCACACCCAATGACTTGCACTGGGCCGGAACGGCACTGCTGGGTCTGGACCCTGC 68% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000049346.10 ENSMUST00000196296.2 |
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| CDS CCA 72 bp | AAAGTCTGGTGGCCTGGGGCAGCACCGAAGCCCAGCTaGTCAATGGCAGGGGGTTCCTCCTGGCCGTGGATC | + |
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Preference number: 6 (lower is better) Translates to: KVWWPGAAPKPS*SMAGGSSWPWI Trigger: GATCCACGGCCAGGAGGAACCCCCTGCCATTGACCAGCTGGGCTTCGGTGCTGCCCCAGGCCACCAGACTTT 65% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000049346.10 ENSMUST00000196296.2 |
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| CDS CAA 72 bp | AGACCCAGCAGTGCCGTTCCGGCCCAGTGCAAGTCATaGGGTGTGAGGCGTGAGCGGCGCAGGGGATTGATG | + |
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Preference number: 6 (lower is better) Translates to: RPSSAVPAQCKS*GVRRERRRGLM Trigger: CATCAATCCCCTGCGCCGCTCACGCCTCACACCCAATGACTTGCACTGGGCCGGAACGGCACTGCTGGGTCT 64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000049346.10 ENSMUST00000196296.2 |
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| CDS TCA 72 bp | CTCGCTACGGTTGTATTTCCGGGCCAGGTAGCGAGCTaGAGCGCGGCTGGGAATCCGCACCATGGAGAGCTC | + |
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Preference number: 6 (lower is better) Translates to: LATVVFPGQVAS*SAAGNPHHGEL Trigger: GAGCTCTCCATGGTGCGGATTCCCAGCCGCGCTTCAGCTCGCTACCTGGCCCGGAAATACAACCGTAGCGAG 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000196296.2 ENSMUST00000198442.2 |
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| CDS CAA 90 bp | GCAGGGTCCAGACCCAGCAGTGCCGTTCCGGCCCAGTGCAAGTCATaGGGTGTGAGGCGTGAGCGGCGCAGGGGATTGATGTTACACAAA | + |
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Preference number: 6 (lower is better) Translates to: AGSRPSSAVPAQCKS*GVRRERRRGLMLHK Trigger: TTTGTGTAACATCAATCCCCTGCGCCGCTCACGCCTCACACCCAATGACTTGCACTGGGCCGGAACGGCACTGCTGGGTCTGGACCCTGC 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000049346.10 ENSMUST00000196296.2 |
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| CDS GCA 72 bp | GTCCTCAAGGGAGTGGCCGGCTCTGGCGTAGAGTTGTaGCATGTCAAAAGTCGGACTGGGCATGAAGCCAGG | + |
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Preference number: 6 (lower is better) Translates to: VLKGVAGSGVEL*HVKSRTGHEAR Trigger: CCTGGCTTCATGCCCAGTCCGACTTTTGACATGGCACAACTCTACGCCAGAGCCGGCCACTCCCTTGAGGAC 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000049346.10 ENSMUST00000196296.2 |
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| CDS CAA 90 bp | GTCCAGCAACATGTCCTCAAGGGAGTGGCCGGCTCTGGCGTAGAGTaGTGCCATGTCAAAAGTCGGACTGGGCATGAAGCCAGGTGGTGC | + |
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Preference number: 6 (lower is better) Translates to: VQQHVLKGVAGSGVE*CHVKSRTGHEARWC Trigger: GCACCACCTGGCTTCATGCCCAGTCCGACTTTTGACATGGCACAACTCTACGCCAGAGCCGGCCACTCCCTTGAGGACATGTTGCTGGAC 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000049346.10 ENSMUST00000196296.2 |
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| CDS GCA 72 bp | GAGCTGGGCTGGCACAGTCCTTGTACTGCTGGGGGCTaGACACTGGGGAGTTTCCAGGCATATGCATCATTC | + |
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Preference number: 6 (lower is better) Translates to: ELGWHSPCTAGG*TLGSFQAYASF Trigger: GAATGATGCATATGCCTGGAAACTCCCCAGTGTGCAGCCCCCAGCAGTACAAGGACTGTGCCAGCCCAGCTC 58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000049346.10 ENSMUST00000196296.2 |
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| CDS CCA 72 bp | GGGATCCACAGATGCGGTATTGCAGTCACCCCAGGGTaGTGGCAGGAAACTCAGTTGCTGTTGCTGGCAGGA | + |
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Preference number: 6 (lower is better) Translates to: GIHRCGIAVTPG*WQETQLLLLAG Trigger: TCCTGCCAGCAACAGCAACTGAGTTTCCTGCCACCACCCTGGGGTGACTGCAATACCGCATCTGTGGATCCC 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000049346.10 ENSMUST00000196296.2 |
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| CDS CCA 72 bp | GCTGGAGCTAGGGGAACCCAGGGGATCAGAGGGCTCTaGATCAAAGTCGGGATCCACAGATGCGGTATTGCA | + |
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Preference number: 6 (lower is better) Translates to: AGARGTQGIRGL*IKVGIHRCGIA Trigger: TGCAATACCGCATCTGTGGATCCCGACTTTGATCCAGAGCCCTCTGATCCCCTGGGTTCCCCTAGCTCCAGC 58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000049346.10 ENSMUST00000196296.2 |
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| CDS CAA 72 bp | CATGTCCTCAAGGGAGTGGCCGGCTCTGGCGTAGAGTaGTGCCATGTCAAAAGTCGGACTGGGCATGAAGCC | + |
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Preference number: 6 (lower is better) Translates to: HVLKGVAGSGVE*CHVKSRTGHEA Trigger: GGCTTCATGCCCAGTCCGACTTTTGACATGGCACAACTCTACGCCAGAGCCGGCCACTCCCTTGAGGACATG 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000049346.10 ENSMUST00000196296.2 |
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| CDS CAA 90 bp | GGATCAGAGGGCTCTGGATCAAAGTCGGGATCCACAGATGCGGTATaGCAGTCACCCCAGGGTGGTGGCAGGAAACTCAGTTGCTGTTGC | + |
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Preference number: 6 (lower is better) Translates to: GSEGSGSKSGSTDAV*QSPQGGGRKLSCCC Trigger: GCAACAGCAACTGAGTTTCCTGCCACCACCCTGGGGTGACTGCAATACCGCATCTGTGGATCCCGACTTTGATCCAGAGCCCTCTGATCC 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000049346.10 ENSMUST00000196296.2 |
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| CDS GCA 72 bp | ATCAGAGGGCTCTGGATCAAAGTCGGGATCCACAGATaGGGTATTGCAGTCACCCCAGGGTGGTGGCAGGAA | + |
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Preference number: 6 (lower is better) Translates to: IRGLWIKVGIHR*GIAVTPGWWQE Trigger: TTCCTGCCACCACCCTGGGGTGACTGCAATACCGCATCTGTGGATCCCGACTTTGATCCAGAGCCCTCTGAT 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000049346.10 ENSMUST00000196296.2 |
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| CDS CCA 72 bp | ATCCACAGATGCGGTATTGCAGTCACCCCAGGGTGGTaGCAGGAAACTCAGTTGCTGTTGCTGGCAGGACAC | + |
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Preference number: 6 (lower is better) Translates to: IHRCGIAVTPGW*QETQLLLLAGH Trigger: GTGTCCTGCCAGCAACAGCAACTGAGTTTCCTGCCACCACCCTGGGGTGACTGCAATACCGCATCTGTGGAT 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000049346.10 ENSMUST00000196296.2 |
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| CDS CCA 72 bp | GCTGGCACAGTCCTTGTACTGCTGGGGGCTGCACACTaGGGAGTTTCCAGGCATATGCATCATTCGACATCC | + |
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Preference number: 6 (lower is better) Translates to: AGTVLVLLGAAH*GVSRHMHHSTS Trigger: GGATGTCGAATGATGCATATGCCTGGAAACTCCCCAGTGTGCAGCCCCCAGCAGTACAAGGACTGTGCCAGC 57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000049346.10 ENSMUST00000196296.2 |
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| CDS CAA 72 bp | GGCTCTGGATCAAAGTCGGGATCCACAGATGCGGTATaGCAGTCACCCCAGGGTGGTGGCAGGAAACTCAGT | + |
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Preference number: 6 (lower is better) Translates to: GSGSKSGSTDAV*QSPQGGGRKLS Trigger: ACTGAGTTTCCTGCCACCACCCTGGGGTGACTGCAATACCGCATCTGTGGATCCCGACTTTGATCCAGAGCC 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000049346.10 ENSMUST00000196296.2 |
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| CDS GCA 72 bp | GCTCTGGATCAAAGTCGGGATCCACAGATGCGGTATTaGAGTCACCCCAGGGTGGTGGCAGGAAACTCAGTT | + |
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Preference number: 6 (lower is better) Translates to: ALDQSRDPQMRY*SHPRVVAGNSV Trigger: AACTGAGTTTCCTGCCACCACCCTGGGGTGACTGCAATACCGCATCTGTGGATCCCGACTTTGATCCAGAGC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000049346.10 ENSMUST00000196296.2 |
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| CDS CCA 72 bp | GTGAAAATCACTGTGAAGTTCTCAGGTCCACAGGGCTaGCCACGGTATCGGCAGTCCAGCAACATGTCCTCA | + |
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Preference number: 6 (lower is better) Translates to: VKITVKFSGPQG*PRYRQSSNMSS Trigger: TGAGGACATGTTGCTGGACTGCCGATACCGTGGCCAGCCCTGTGGACCTGAGAACTTCACAGTGATTTTCAC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000049346.10 ENSMUST00000196296.2 |
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| CDS CAA 90 bp | CCTTTGAGAGCTCCTTCTGTTCCAGAAGTACCCCAGGACTCTGTCTaGAAAAACCTCACAGAGGTAGTCGAGGATCTCGAGGATGGTAAG | + |
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Preference number: 6 (lower is better) Translates to: PLRAPSVPEVPQDSV*KNLTEVVEDLEDGK Trigger: CTTACCATCCTCGAGATCCTCGACTACCTCTGTGAGGTTTTTCAAGACAGAGTCCTGGGGTACTTCTGGAACAGAAGGAGCTCTCAAAGG 50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000049346.10 ENSMUST00000196296.2 |
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