RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for ASIC2 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000020704

Ensembl transcript IDs: ENSMUST00000021045.13, ENSMUST00000066197.7

Found 191 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR GCA 90 bp CAGAGCTGGGCTCAGGGTGACTTTGGGTCTGCAACCTGGTCCCACTaGCTGGGTAGCAGAGTGGGCTCCCTCCGGAAACCGCACGGAGAA +
Preference number: 1 (lower is better)
Translates to: QSWAQGDFGSATWSH*LGSRVGSLRKPHGE
Trigger: TTCTCCGTGCGGTTTCCGGAGGGAGCCCACTCTGCTACCCAGGCAGTGGGACCAGGTTGCAGACCCAAAGTCACCCTGAGCCCAGCTCTG
63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000021045.13
ENSMUST00000066197.7
3UTR TCA 90 bp CAGGTTAGTTCTTGGACAGTTCCGGAGCGCGACTCATCGGTCCTATaGGGGACACGAGGCTGGGCCCGGGACCGTTCGTGTCAGATGTGG +
Preference number: 1 (lower is better)
Translates to: QVSSWTVPERDSSVL*GTRGWARDRSCQMW
Trigger: CCACATCTGACACGAACGGTCCCGGGCCCAGCCTCGTGTCCCTCATAGGACCGATGAGTCGCGCTCCGGAACTGTCCAAGAACTAACCTG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000021045.13
ENSMUST00000066197.7
3UTR CCA 90 bp GCTGGGCTCAGGGTGACTTTGGGTCTGCAACCTGGTCCCACTGCCTaGGTAGCAGAGTGGGCTCCCTCCGGAAACCGCACGGAGAAAATA +
Preference number: 1 (lower is better)
Translates to: AGLRVTLGLQPGPTA*VAEWAPSGNRTEKI
Trigger: TATTTTCTCCGTGCGGTTTCCGGAGGGAGCCCACTCTGCTACCCAGGCAGTGGGACCAGGTTGCAGACCCAAAGTCACCCTGAGCCCAGC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000021045.13
ENSMUST00000066197.7
3UTR CCA 90 bp GTACTTCCTCCACAGGTGCTGAGAAAAGAAGGAGGAGGTTGGTACTaGTCACCTTTAGTGCAGGAGCCCAGTGGGCCAGTTTGGGGGACA +
Preference number: 1 (lower is better)
Translates to: VLPPQVLRKEGGGWY*SPLVQEPSGPVWGT
Trigger: TGTCCCCCAAACTGGCCCACTGGGCTCCTGCACTAAAGGTGACCAGTACCAACCTCCTCCTTCTTTTCTCAGCACCTGTGGAGGAAGTAC
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000021045.13
ENSMUST00000066197.7
3UTR TCA 90 bp AACGTTGTAGAGAGTTCTGTGGTTTCCTTCTTGACAGTGCAGTTTTaGTTCCAGAGCTGGGCTCAGGGTGACTTTGGGTCTGCAACCTGG +
Preference number: 1 (lower is better)
Translates to: NVVESSVVSFLTVQF*FQSWAQGDFGSATW
Trigger: CCAGGTTGCAGACCCAAAGTCACCCTGAGCCCAGCTCTGGAATCAAAACTGCACTGTCAAGAAGGAAACCACAGAACTCTCTACAACGTT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000021045.13
ENSMUST00000066197.7
3UTR CCA 90 bp AACAAAAATCAGACTCTACATCTGTGTCACAGGGAGAGAACAAAGTaGCTCCATGGACAAATACTGGGGTCACCCAGGCCACCGTACTTC +
Preference number: 1 (lower is better)
Translates to: NKNQTLHLCHRERTK*LHGQILGSPRPPYF
Trigger: GAAGTACGGTGGCCTGGGTGACCCCAGTATTTGTCCATGGAGCCACTTTGTTCTCTCCCTGTGACACAGATGTAGAGTCTGATTTTTGTT
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000021045.13
ENSMUST00000066197.7
3UTR-3UTR GCA 90 bp GGTTGGTACTGGTCACCTTTAGTGCAGGAGCCCAGTGGGCCAGTTTGGGGGACAGCAACCTGGTCCCACTaGCTGGGTAGCAGAGTGGGC +
Preference number: 2 (lower is better)
Translates to: GWYWSPLVQEPSGPVWGTATWSH*LGSRVG
Trigger: GCCCACTCTGCTACCCAGGCAGTGGGACCAGGTTGC...TGTCCCCCAAACTGGCCCACTGGGCTCCTGCACTAAAGGTGACCAGTACCAACC
61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000021045.13
ENSMUST00000066197.7
3UTR-3UTR CCA 90 bp GGTCACCCAGGCCACCGTACTTCCTCCACAGGTGCTGAGAAAAGAAGGAGGAGGAGTGCAGGAGCCCAGTaGGCCAGTTTGGGGGACAAG +
Preference number: 2 (lower is better)
Translates to: GHPGHRTSSTGAEKRRRRSAGAQ*ASLGDK
Trigger: CTTGTCCCCCAAACTGGCCCACTGGGCTCCTGCACT...CCTCCTCCTTCTTTTCTCAGCACCTGTGGAGGAAGTACGGTGGCCTGGGTGACC
60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000021045.13
ENSMUST00000066197.7
3UTR-3UTR TCA 90 bp TACTGGTCACCTTTAGTGCAGGAGCCCAGTGGGCCAGTTTGGGGGACAAGGCTAGAGCTGGGCTCAGGGTaGCTTTGGGTCTGCAACCTG +
Preference number: 2 (lower is better)
Translates to: YWSPLVQEPSGPVWGTRLELGSG*LWVCNL
Trigger: CAGGTTGCAGACCCAAAGTCACCCTGAGCCCAGCTC...TAGCCTTGTCCCCCAAACTGGCCCACTGGGCTCCTGCACTAAAGGTGACCAGTA
59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000021045.13
ENSMUST00000066197.7
3UTR-3UTR GCA 90 bp CAGGCCACCGTACTTCCTCCACAGGTGCTGAGAAAAGAAGGAGGAGGTTGGTACGCAACCTGGTCCCACTaGCTGGGTAGCAGAGTGGGC +
Preference number: 2 (lower is better)
Translates to: QATVLPPQVLRKEGGGWYATWSH*LGSRVG
Trigger: GCCCACTCTGCTACCCAGGCAGTGGGACCAGGTTGC...GTACCAACCTCCTCCTTCTTTTCTCAGCACCTGTGGAGGAAGTACGGTGGCCTG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000021045.13
ENSMUST00000066197.7
3UTR-3UTR CCA 90 bp TGGGGTCACCCAGGCCACCGTACTTCCTCCACAGGTGCTGAGAAAAGAAGGAGGTTTGGGTCTGCAACCTaGTCCCACTGCCTGGGTAGC +
Preference number: 2 (lower is better)
Translates to: WGHPGHRTSSTGAEKRRRFGSAT*SHCLGS
Trigger: GCTACCCAGGCAGTGGGACCAGGTTGCAGACCCAAA...CCTCCTTCTTTTCTCAGCACCTGTGGAGGAAGTACGGTGGCCTGGGTGACCCCA
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000021045.13
ENSMUST00000066197.7
3UTR-3UTR TCA 90 bp GGAGCCCAGTGGGCCAGTTTGGGGGACAAGGCTAGGAACCTTCACGAACAACACTCAGATGTGGCCAGGTaGGGTTTGGCAGAAGTTCGC +
Preference number: 2 (lower is better)
Translates to: GAQWASLGDKARNLHEQHSDVAR*GLAEVR
Trigger: GCGAACTTCTGCCAAACCTCACCTGGCCACATCTGA...GTGTTGTTCGTGAAGGTTCCTAGCCTTGTCCCCCAAACTGGCCCACTGGGCTCC
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000021045.13
ENSMUST00000066197.7
3UTR-3UTR GCA 90 bp TTGGTACTGGTCACCTTTAGTGCAGGAGCCCAGTGGGCCAGTTTGGGGGACAAGTGTCCTCAGGGGCTATaGCACCTGAGCTTGCTGTCC +
Preference number: 2 (lower is better)
Translates to: LVLVTFSAGAQWASLGDKCPQGL*HLSLLS
Trigger: GGACAGCAAGCTCAGGTGGCATAGCCCCTGAGGACA...CTTGTCCCCCAAACTGGCCCACTGGGCTCCTGCACTAAAGGTGACCAGTACCAA
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000021045.13
ENSMUST00000066197.7
3UTR-3UTR TCA 90 bp CAGGGAGAGAACAAAGTGGCTCCATGGACAAATACTGGGGTCACCCAGGCCACCTCAGATGTGGCCAGGTaGGGTTTGGCAGAAGTTCGC +
Preference number: 2 (lower is better)
Translates to: QGENKVAPWTNTGVTQATSDVAR*GLAEVR
Trigger: GCGAACTTCTGCCAAACCTCACCTGGCCACATCTGA...GGTGGCCTGGGTGACCCCAGTATTTGTCCATGGAGCCACTTTGTTCTCTCCCTG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000021045.13
ENSMUST00000066197.7
3UTR-3UTR GCA 90 bp AGGTTAGTTCTTGGACAGTTCCGGAGCGCGACTCATCGGTCCTATGAGGGACACTGTCCTCAGGGGCTATaGCACCTGAGCTTGCTGTCC +
Preference number: 2 (lower is better)
Translates to: RLVLGQFRSATHRSYEGHCPQGL*HLSLLS
Trigger: GGACAGCAAGCTCAGGTGGCATAGCCCCTGAGGACA...GTGTCCCTCATAGGACCGATGAGTCGCGCTCCGGAACTGTCCAAGAACTAACCT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000021045.13
ENSMUST00000066197.7
3UTR-3UTR CCA 90 bp GGAGCCCAGTGGGCCAGTTTGGGGGACAAGGCTAGGAACCTTCACGAACAACACCCCTGTCCTGGGTCTTaGGCCTTTAAGGTCTGTTTG +
Preference number: 2 (lower is better)
Translates to: GAQWASLGDKARNLHEQHPCPGS*AFKVCL
Trigger: CAAACAGACCTTAAAGGCCCAAGACCCAGGACAGGG...GTGTTGTTCGTGAAGGTTCCTAGCCTTGTCCCCCAAACTGGCCCACTGGGCTCC
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000021045.13
ENSMUST00000066197.7
3UTR-3UTR TCA 90 bp GGTCACCCAGGCCACCGTACTTCCTCCACAGGTGCTGAGAAAAGAAGGAGGAGGTCTGGCAGTGAGATGTaGTGGCAGGTTAGTTCTTGG +
Preference number: 2 (lower is better)
Translates to: GHPGHRTSSTGAEKRRRRSGSEM*WQVSSW
Trigger: CCAAGAACTAACCTGCCATCACATCTCACTGCCAGA...CCTCCTCCTTCTTTTCTCAGCACCTGTGGAGGAAGTACGGTGGCCTGGGTGACC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000021045.13
ENSMUST00000066197.7
3UTR-3UTR TCA 90 bp GGGGTCACCCAGGCCACCGTACTTCCTCCACAGGTGCTGAGAAAAGAAGGAGGATTGACAGTGCAGTTTTaGTTCCAGAGCTGGGCTCAG +
Preference number: 2 (lower is better)
Translates to: GVTQATVLPPQVLRKEGGLTVQF*FQSWAQ
Trigger: CTGAGCCCAGCTCTGGAATCAAAACTGCACTGTCAA...TCCTCCTTCTTTTCTCAGCACCTGTGGAGGAAGTACGGTGGCCTGGGTGACCCC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000021045.13
ENSMUST00000066197.7
3UTR-3UTR TCA 90 bp CAGGGAGAGAACAAAGTGGCTCCATGGACAAATACTGGGGTCACCCAGGCCACCTTGACAGTGCAGTTTTaGTTCCAGAGCTGGGCTCAG +
Preference number: 2 (lower is better)
Translates to: QGENKVAPWTNTGVTQATLTVQF*FQSWAQ
Trigger: CTGAGCCCAGCTCTGGAATCAAAACTGCACTGTCAA...GGTGGCCTGGGTGACCCCAGTATTTGTCCATGGAGCCACTTTGTTCTCTCCCTG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000021045.13
ENSMUST00000066197.7
3UTR-3UTR CCA 90 bp GTCACCCAGGCCACCGTACTTCCTCCACAGGTGCTGAGAAAAGAAGGAGGAGGTTGGCCAGGTGAGGTTTaGCAGAAGTTCGCAATGTGT +
Preference number: 2 (lower is better)
Translates to: VTQATVLPPQVLRKEGGGWPGEV*QKFAMC
Trigger: ACACATTGCGAACTTCTGCCAAACCTCACCTGGCCA...ACCTCCTCCTTCTTTTCTCAGCACCTGTGGAGGAAGTACGGTGGCCTGGGTGAC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000021045.13
ENSMUST00000066197.7
3UTR CAA 90 bp AGGTTGGTACTGGTCACCTTTAGTGCAGGAGCCCAGTGGGCCAGTTaGGGGGACAAGGCTAGGAACCTTCACGAACAACACAAGGATCAA +
Preference number: 2 (lower is better)
Translates to: RLVLVTFSAGAQWAS*GDKARNLHEQHKDQ
Trigger: TTGATCCTTGTGTTGTTCGTGAAGGTTCCTAGCCTTGTCCCCCAAACTGGCCCACTGGGCTCCTGCACTAAAGGTGACCAGTACCAACCT
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000021045.13
ENSMUST00000066197.7
3UTR-3UTR TCA 90 bp CATGTACAAGACGCAAGTGGAGGCGGCGCTGTAAGAAGTCTGAGCATGCAGGTGTCTGGCAGTGAGATGTaGTGGCAGGTTAGTTCTTGG +
Preference number: 2 (lower is better)
Translates to: HVQDASGGGAVRSLSMQVSGSEM*WQVSSW
Trigger: CCAAGAACTAACCTGCCATCACATCTCACTGCCAGA...CACCTGCATGCTCAGACTTCTTACAGCGCCGCCTCCACTTGCGTCTTGTACATG
53% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000021045.13
ENSMUST00000066197.7
3UTR-3UTR CCA 90 bp AACACAAGGATCAAACGTTGTAGAGAGTTCTGTGGTTTCCTTCTTGACAGTGCAGCCTGGGTAGCAGAGTaGGCTCCCTCCGGAAACCGC +
Preference number: 2 (lower is better)
Translates to: NTRIKRCREFCGFLLDSAAWVAE*APSGNR
Trigger: GCGGTTTCCGGAGGGAGCCCACTCTGCTACCCAGGC...TGCACTGTCAAGAAGGAAACCACAGAACTCTCTACAACGTTTGATCCTTGTGTT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000021045.13
ENSMUST00000066197.7
3UTR-3UTR CCA 90 bp ACAAGGCTAGGAACCTTCACGAACAACACAAGGATCAAACGTTGTAGAGAGTTCTGGCCAGGTGAGGTTTaGCAGAAGTTCGCAATGTGT +
Preference number: 2 (lower is better)
Translates to: TRLGTFTNNTRIKRCREFWPGEV*QKFAMC
Trigger: ACACATTGCGAACTTCTGCCAAACCTCACCTGGCCA...GAACTCTCTACAACGTTTGATCCTTGTGTTGTTCGTGAAGGTTCCTAGCCTTGT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000021045.13
ENSMUST00000066197.7
3UTR TCA 72 bp TCTTGGACAGTTCCGGAGCGCGACTCATCGGTCCTATaGGGGACACGAGGCTGGGCCCGGGACCGTTCGTGT +
Preference number: 3 (lower is better)
Translates to: SWTVPERDSSVL*GTRGWARDRSC
Trigger: ACACGAACGGTCCCGGGCCCAGCCTCGTGTCCCTCATAGGACCGATGAGTCGCGCTCCGGAACTGTCCAAGA
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000021045.13
ENSMUST00000066197.7
3UTR GCA 72 bp GCTCAGGGTGACTTTGGGTCTGCAACCTGGTCCCACTaGCTGGGTAGCAGAGTGGGCTCCCTCCGGAAACCG +
Preference number: 3 (lower is better)
Translates to: AQGDFGSATWSH*LGSRVGSLRKP
Trigger: CGGTTTCCGGAGGGAGCCCACTCTGCTACCCAGGCAGTGGGACCAGGTTGCAGACCCAAAGTCACCCTGAGC
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000021045.13
ENSMUST00000066197.7
3UTR CCA 72 bp AGGGTGACTTTGGGTCTGCAACCTGGTCCCACTGCCTaGGTAGCAGAGTGGGCTCCCTCCGGAAACCGCACG +
Preference number: 3 (lower is better)
Translates to: RVTLGLQPGPTA*VAEWAPSGNRT
Trigger: CGTGCGGTTTCCGGAGGGAGCCCACTCTGCTACCCAGGCAGTGGGACCAGGTTGCAGACCCAAAGTCACCCT
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000021045.13
ENSMUST00000066197.7
3UTR CCA 72 bp CAGAGCTGGGCTCAGGGTGACTTTGGGTCTGCAACCTaGTCCCACTGCCTGGGTAGCAGAGTGGGCTCCCTC +
Preference number: 3 (lower is better)
Translates to: QSWAQGDFGSAT*SHCLGSRVGSL
Trigger: GAGGGAGCCCACTCTGCTACCCAGGCAGTGGGACCAGGTTGCAGACCCAAAGTCACCCTGAGCCCAGCTCTG
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000021045.13
ENSMUST00000066197.7
3UTR-3UTR CAA 90 bp TACTGGTCACCTTTAGTGCAGGAGCCCAGTGGGCCAGTTTGGGGGACAAGGCTAGCCTTTAAGGTCTGTTaGGAGGTGCTGGGCTGCCTG +
Preference number: 3 (lower is better)
Translates to: YWSPLVQEPSGPVWGTRLAFKVC*EVLGCL
Trigger: CAGGCAGCCCAGCACCTCCAAACAGACCTTAAAGGC...TAGCCTTGTCCCCCAAACTGGCCCACTGGGCTCCTGCACTAAAGGTGACCAGTA
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000021045.13
ENSMUST00000066197.7
3UTR CCA 72 bp TGGTCACCTTTAGTGCAGGAGCCCAGTGGGCCAGTTTaGGGGACAAGGCTAGGAACCTTCACGAACAACACA +
Preference number: 3 (lower is better)
Translates to: WSPLVQEPSGPV*GTRLGTFTNNT
Trigger: TGTGTTGTTCGTGAAGGTTCCTAGCCTTGTCCCCCAAACTGGCCCACTGGGCTCCTGCACTAAAGGTGACCA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000021045.13
ENSMUST00000066197.7
3UTR CCA 72 bp CCACAGGTGCTGAGAAAAGAAGGAGGAGGTTGGTACTaGTCACCTTTAGTGCAGGAGCCCAGTGGGCCAGTT +
Preference number: 3 (lower is better)
Translates to: PQVLRKEGGGWY*SPLVQEPSGPV
Trigger: AACTGGCCCACTGGGCTCCTGCACTAAAGGTGACCAGTACCAACCTCCTCCTTCTTTTCTCAGCACCTGTGG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000021045.13
ENSMUST00000066197.7
3UTR CCA 72 bp CTTCCTCCACAGGTGCTGAGAAAAGAAGGAGGAGGTTaGTACTGGTCACCTTTAGTGCAGGAGCCCAGTGGG +
Preference number: 3 (lower is better)
Translates to: LPPQVLRKEGGG*YWSPLVQEPSG
Trigger: CCCACTGGGCTCCTGCACTAAAGGTGACCAGTACCAACCTCCTCCTTCTTTTCTCAGCACCTGTGGAGGAAG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000021045.13
ENSMUST00000066197.7
3UTR CCA 72 bp ACAGGGAGAGAACAAAGTGGCTCCATGGACAAATACTaGGGTCACCCAGGCCACCGTACTTCCTCCACAGGT +
Preference number: 3 (lower is better)
Translates to: TGREQSGSMDKY*GHPGHRTSSTG
Trigger: ACCTGTGGAGGAAGTACGGTGGCCTGGGTGACCCCAGTATTTGTCCATGGAGCCACTTTGTTCTCTCCCTGT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000021045.13
ENSMUST00000066197.7
3UTR CCA 72 bp ACATCTGTGTCACAGGGAGAGAACAAAGTGGCTCCATaGACAAATACTGGGGTCACCCAGGCCACCGTACTT +
Preference number: 3 (lower is better)
Translates to: TSVSQGENKVAP*TNTGVTQATVL
Trigger: AAGTACGGTGGCCTGGGTGACCCCAGTATTTGTCCATGGAGCCACTTTGTTCTCTCCCTGTGACACAGATGT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000021045.13
ENSMUST00000066197.7
3UTR CCA 72 bp CAGACTCTACATCTGTGTCACAGGGAGAGAACAAAGTaGCTCCATGGACAAATACTGGGGTCACCCAGGCCA +
Preference number: 3 (lower is better)
Translates to: QTLHLCHRERTK*LHGQILGSPRP
Trigger: TGGCCTGGGTGACCCCAGTATTTGTCCATGGAGCCACTTTGTTCTCTCCCTGTGACACAGATGTAGAGTCTG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000021045.13
ENSMUST00000066197.7
3UTR-3UTR CAA 90 bp ACAAGGCTAGGAACCTTCACGAACAACACAAGGATCAAACGTTGTAGAGAGTTCGCCTTTAAGGTCTGTTaGGAGGTGCTGGGCTGCCTG +
Preference number: 3 (lower is better)
Translates to: TRLGTFTNNTRIKRCREFAFKVC*EVLGCL
Trigger: CAGGCAGCCCAGCACCTCCAAACAGACCTTAAAGGC...GAACTCTCTACAACGTTTGATCCTTGTGTTGTTCGTGAAGGTTCCTAGCCTTGT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000021045.13
ENSMUST00000066197.7
CDS-3UTR CCA 90 bp GGGGCTATGCCACCTGAGCTTGCTGTCCCCTGTCCTGGGTCTTGGGCCTTTAAGCACAGCGCCCGCCGCTaGAAAGAGCCTCCCGCCGCC +
Preference number: 4 (lower is better)
Translates to: GAMPPELAVPCPGSWAFKHSARR*KEPPAA
Trigger: GGCGGCGGGAGGCTCTTTCCAGCGGCGGGCGCTGTG...CTTAAAGGCCCAAGACCCAGGACAGGGGACAGCAAGCTCAGGTGGCATAGCCCC
67% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000021045.13
CDS-3UTR CCA 90 bp GGGGTCACCCAGGCCACCGTACTTCCTCCACAGGTGCTGAGAAAAGAAGGAGGACCTGCGGGCGACCCCTaGCCCCTGCAGCTCCCGATC +
Preference number: 4 (lower is better)
Translates to: GVTQATVLPPQVLRKEGGPAGDP*PLQLPI
Trigger: GATCGGGAGCTGCAGGGGCCAGGGGTCGCCCGCAGG...TCCTCCTTCTTTTCTCAGCACCTGTGGAGGAAGTACGGTGGCCTGGGTGACCCC
66% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 1 transcripts:
ENSMUST00000021045.13
CDS-3UTR CCA 90 bp GCTGTCCCCTGTCCTGGGTCTTGGGCCTTTAAGGTCTGTTTGGAGGTGCTGGGCGGGCCTCCAGCACGGTaGGGTCCGCCAGATGCGGGT +
Preference number: 4 (lower is better)
Translates to: AVPCPGSWAFKVCLEVLGGPPAR*GPPDAG
Trigger: ACCCGCATCTGGCGGACCCCACCGTGCTGGAGGCCC...GCCCAGCACCTCCAAACAGACCTTAAAGGCCCAAGACCCAGGACAGGGGACAGC
66% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000066197.7
CDS-3UTR GCA 90 bp CAGGGAGAGAACAAAGTGGCTCCATGGACAAATACTGGGGTCACCCAGGCCACCGCGACCCCTGGCCCCTaGAGCTCCCGATCGCCGCTC +
Preference number: 4 (lower is better)
Translates to: QGENKVAPWTNTGVTQATATPGP*SSRSPL
Trigger: GAGCGGCGATCGGGAGCTGCAGGGGCCAGGGGTCGC...GGTGGCCTGGGTGACCCCAGTATTTGTCCATGGAGCCACTTTGTTCTCTCCCTG
64% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000021045.13
CDS-3UTR CCA 90 bp TGGGGTCACCCAGGCCACCGTACTTCCTCCACAGGTGCTGAGAAAAGAAGGAGGGGCGCGCGGTGCGGTTaGGCAGCAGCAGTCCTAGCC +
Preference number: 4 (lower is better)
Translates to: WGHPGHRTSSTGAEKRRRGARCG*AAAVLA
Trigger: GGCTAGGACTGCTGCTGCCCAACCGCACCGCGCGCC...CCTCCTTCTTTTCTCAGCACCTGTGGAGGAAGTACGGTGGCCTGGGTGACCCCA
64% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000021045.13
CDS-3UTR GCA 90 bp CTGCAACCTGGTCCCACTGCCTGGGTAGCAGAGTGGGCTCCCTCCGGAAACCGCGCACACTCCTTGTGCTaGTCAGGGGTGCAGAAAGGG +
Preference number: 4 (lower is better)
Translates to: LQPGPTAWVAEWAPSGNRAHSLC*SGVQKG
Trigger: CCCTTTCTGCACCCCTGAGCAGCACAAGGAGTGTGC...GCGGTTTCCGGAGGGAGCCCACTCTGCTACCCAGGCAGTGGGACCAGGTTGCAG
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000021045.13
ENSMUST00000066197.7
CDS-3UTR CCA 90 bp CAGGCCACCGTACTTCCTCCACAGGTGCTGAGAAAAGAAGGAGGAGGTTGGTACGCGGGGAACGGCAGCTaGCGGCTCCACTCGCGGTGC +
Preference number: 4 (lower is better)
Translates to: QATVLPPQVLRKEGGGWYAGNGS*RLHSRC
Trigger: GCACCGCGAGTGGAGCCGCCAGCTGCCGTTCCCCGC...GTACCAACCTCCTCCTTCTTTTCTCAGCACCTGTGGAGGAAGTACGGTGGCCTG
63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000021045.13
CDS-3UTR CCA 90 bp GCTGTCCCCTGTCCTGGGTCTTGGGCCTTTAAGGTCTGTTTGGAGGTGCTGGGCCTGATGCCCTCGAAGTaGCGCGGCGGCAGGAAGAGG +
Preference number: 4 (lower is better)
Translates to: AVPCPGSWAFKVCLEVLGLMPSK*RGGRKR
Trigger: CCTCTTCCTGCCGCCGCGCCACTTCGAGGGCATCAG...GCCCAGCACCTCCAAACAGACCTTAAAGGCCCAAGACCCAGGACAGGGGACAGC
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000021045.13
CDS-3UTR GCA 90 bp GCTGTCCCCTGTCCTGGGTCTTGGGCCTTTAAGGTCTGTTTGGAGGTGCTGGGCGCCGAGGGCTGGCTCTaGACACTCCTTGTGCTGCTC +
Preference number: 4 (lower is better)
Translates to: AVPCPGSWAFKVCLEVLGAEGWL*TLLVLL
Trigger: GAGCAGCACAAGGAGTGTGCAGAGCCAGCCCTCGGC...GCCCAGCACCTCCAAACAGACCTTAAAGGCCCAAGACCCAGGACAGGGGACAGC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000021045.13
ENSMUST00000066197.7
CDS-3UTR GCA 90 bp CAGGCCACCGTACTTCCTCCACAGGTGCTGAGAAAAGAAGGAGGAGGTTGGTACCGGCTCCACTCGCGGTaGACTCGCGTGTGTGACGGG +
Preference number: 4 (lower is better)
Translates to: QATVLPPQVLRKEGGGWYRLHSR*TRVCDG
Trigger: CCCGTCACACACGCGAGTGCACCGCGAGTGGAGCCG...GTACCAACCTCCTCCTTCTTTTCTCAGCACCTGTGGAGGAAGTACGGTGGCCTG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000021045.13
CDS-3UTR GCA 90 bp GCTGTCCCCTGTCCTGGGTCTTGGGCCTTTAAGGTCTGTTTGGAGGTGCTGGGCACTGAGGAGAAGTTGTaGGGGCCACAGAGCTCGCCC +
Preference number: 4 (lower is better)
Translates to: AVPCPGSWAFKVCLEVLGTEEKL*GPQSSP
Trigger: GGGCGAGCTCTGTGGCCCGCACAACTTCTCCTCAGT...GCCCAGCACCTCCAAACAGACCTTAAAGGCCCAAGACCCAGGACAGGGGACAGC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000021045.13
CDS-3UTR GCA 90 bp GCTGTCCCCTGTCCTGGGTCTTGGGCCTTTAAGGTCTGTTTGGAGGTGCTGGGCTCCCACGAAGGCCACTaGCCAAAGCACACGCCGGAT +
Preference number: 4 (lower is better)
Translates to: AVPCPGSWAFKVCLEVLGSHEGH*PKHTPD
Trigger: ATCCGGCGTGTGCTTTGGGCAGTGGCCTTCGTGGGA...GCCCAGCACCTCCAAACAGACCTTAAAGGCCCAAGACCCAGGACAGGGGACAGC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000066197.7
CDS-3UTR CCA 90 bp GGTCACCCAGGCCACCGTACTTCCTCCACAGGTGCTGAGAAAAGAAGGAGGAGGAGTAGAGGTCCCCCTTaGAGAGGCGCGGGAAGCGCA +
Preference number: 4 (lower is better)
Translates to: GHPGHRTSSTGAEKRRRRSRGPP*RGAGSA
Trigger: TGCGCTTCCCGCGCCTCTCCAAGGGGGACCTCTACT...CCTCCTCCTTCTTTTCTCAGCACCTGTGGAGGAAGTACGGTGGCCTGGGTGACC
61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000021045.13
CDS-3UTR CCA 90 bp GGTTGGTACTGGTCACCTTTAGTGCAGGAGCCCAGTGGGCCAGTTTGGGGGACAGCAGAGGGTCACAGCTaGGAAGACCAGGCTCTGGGC +
Preference number: 4 (lower is better)
Translates to: GWYWSPLVQEPSGPVWGTAEGHS*EDQALG
Trigger: GCCCAGAGCCTGGTCTTCCCAGCTGTGACCCTCTGC...TGTCCCCCAAACTGGCCCACTGGGCTCCTGCACTAAAGGTGACCAGTACCAACC
61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000066197.7
CDS-3UTR TCA 90 bp GGGGCTATGCCACCTGAGCTTGCTGTCCCCTGTCCTGGGTCTTGGGCCTTTAAGACTGTGGTGAAGTCTTaGTGCCCACACTCCTGCCCC +
Preference number: 4 (lower is better)
Translates to: GAMPPELAVPCPGSWAFKTVVKS*CPHSCP
Trigger: GGGGCAGGAGTGTGGGCATCAAGACTTCACCACAGT...CTTAAAGGCCCAAGACCCAGGACAGGGGACAGCAAGCTCAGGTGGCATAGCCCC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000066197.7
CDS-3UTR GCA 90 bp GCTGTCCCCTGTCCTGGGTCTTGGGCCTTTAAGGTCTGTTTGGAGGTGCTGGGCGCACACTCCTTGTGCTaGTCAGGGGTGCAGAAAGGG +
Preference number: 4 (lower is better)
Translates to: AVPCPGSWAFKVCLEVLGAHSLC*SGVQKG
Trigger: CCCTTTCTGCACCCCTGAGCAGCACAAGGAGTGTGC...GCCCAGCACCTCCAAACAGACCTTAAAGGCCCAAGACCCAGGACAGGGGACAGC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000021045.13
ENSMUST00000066197.7
CDS-3UTR GCA 90 bp CAGGGAGAGAACAAAGTGGCTCCATGGACAAATACTGGGGTCACCCAGGCCACCGCCGAGGGCTGGCTCTaGACACTCCTTGTGCTGCTC +
Preference number: 4 (lower is better)
Translates to: QGENKVAPWTNTGVTQATAEGWL*TLLVLL
Trigger: GAGCAGCACAAGGAGTGTGCAGAGCCAGCCCTCGGC...GGTGGCCTGGGTGACCCCAGTATTTGTCCATGGAGCCACTTTGTTCTCTCCCTG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000021045.13
ENSMUST00000066197.7
CDS-3UTR CCA 90 bp CTGCAACCTGGTCCCACTGCCTGGGTAGCAGAGTGGGCTCCCTCCGGAAACCGCCTCTTGGATGAAAGGTaGCTCAGACTGGCTGTGGAT +
Preference number: 4 (lower is better)
Translates to: LQPGPTAWVAEWAPSGNRLLDER*LRLAVD
Trigger: ATCCACAGCCAGTCTGAGCCACCTTTCATCCAAGAG...GCGGTTTCCGGAGGGAGCCCACTCTGCTACCCAGGCAGTGGGACCAGGTTGCAG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000021045.13
ENSMUST00000066197.7
CDS-3UTR CCA 90 bp AGGTTAGTTCTTGGACAGTTCCGGAGCGCGACTCATCGGTCCTATGAGGGACACGTGGCCACGAAGGTCTaGAACCCCGGAGCCACCCCA +
Preference number: 4 (lower is better)
Translates to: RLVLGQFRSATHRSYEGHVATKV*NPGATP
Trigger: TGGGGTGGCTCCGGGGTTCCAGACCTTCGTGGCCAC...GTGTCCCTCATAGGACCGATGAGTCGCGCTCCGGAACTGTCCAAGAACTAACCT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000021045.13
ENSMUST00000066197.7
CDS-3UTR CCA 90 bp CATGTACAAGACGCAAGTGGAGGCGGCGCTGTAAGAAGTCTGAGCATGCAGGTGGTGGCCACGAAGGTCTaGAACCCCGGAGCCACCCCA +
Preference number: 4 (lower is better)
Translates to: HVQDASGGGAVRSLSMQVVATKV*NPGATP
Trigger: TGGGGTGGCTCCGGGGTTCCAGACCTTCGTGGCCAC...CACCTGCATGCTCAGACTTCTTACAGCGCCGCCTCCACTTGCGTCTTGTACATG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000021045.13
ENSMUST00000066197.7
CDS-3UTR GCA 90 bp GCTGTCCCCTGTCCTGGGTCTTGGGCCTTTAAGGTCTGTTTGGAGGTGCTGGGCATGTGCCGCAGCCCGTaGAATTTAGTGCGACTCAGG +
Preference number: 4 (lower is better)
Translates to: AVPCPGSWAFKVCLEVLGMCRSP*NLVRLR
Trigger: CCTGAGTCGCACTAAATTGCACGGGCTGCGGCACAT...GCCCAGCACCTCCAAACAGACCTTAAAGGCCCAAGACCCAGGACAGGGGACAGC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000021045.13
CDS-3UTR GCA 90 bp AGGTTAGTTCTTGGACAGTTCCGGAGCGCGACTCATCGGTCCTATGAGGGACACCGCCCCGCGCACATGTaGCGCAGCCCGTGCAATTTA +
Preference number: 4 (lower is better)
Translates to: RLVLGQFRSATHRSYEGHRPAHM*RSPCNL
Trigger: TAAATTGCACGGGCTGCGGCACATGTGCGCGGGGCG...GTGTCCCTCATAGGACCGATGAGTCGCGCTCCGGAACTGTCCAAGAACTAACCT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000021045.13
CDS-3UTR GCA 90 bp GGTTGGTACTGGTCACCTTTAGTGCAGGAGCCCAGTGGGCCAGTTTGGGGGACAGTGCCCAAAGCTGTCTaGAGGGGCACGTTCACAGTG +
Preference number: 4 (lower is better)
Translates to: GWYWSPLVQEPSGPVWGTVPKAV*RGTFTV
Trigger: CACTGTGAACGTGCCCCTGCAGACAGCTTTGGGCAC...TGTCCCCCAAACTGGCCCACTGGGCTCCTGCACTAAAGGTGACCAGTACCAACC
59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000021045.13
ENSMUST00000066197.7
CDS-3UTR GCA 90 bp TGGGGTCACCCAGGCCACCGTACTTCCTCCACAGGTGCTGAGAAAAGAAGGAGGCAATCTCCTCCAGGGTaGCCAAAGCTGTCTGCAGGG +
Preference number: 4 (lower is better)
Translates to: WGHPGHRTSSTGAEKRRRQSPPG*PKLSAG
Trigger: CCCTGCAGACAGCTTTGGGCACCCTGGAGGAGATTG...CCTCCTTCTTTTCTCAGCACCTGTGGAGGAAGTACGGTGGCCTGGGTGACCCCA
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000021045.13
ENSMUST00000066197.7
CDS-3UTR GCA 90 bp CATGTACAAGACGCAAGTGGAGGCGGCGCTGTAAGAAGTCTGAGCATGCAGGTGTGGATGCTGGAAGGTTaGAGGCTGCCCTCGCTGGGG +
Preference number: 4 (lower is better)
Translates to: HVQDASGGGAVRSLSMQVWMLEG*RLPSLG
Trigger: CCCCAGCGAGGGCAGCCTGCAACCTTCCAGCATCCA...CACCTGCATGCTCAGACTTCTTACAGCGCCGCCTCCACTTGCGTCTTGTACATG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000066197.7
CDS-3UTR CCA 90 bp CTGAGCTTGCTGTCCCCTGTCCTGGGTCTTGGGCCTTTAAGGTCTGTTTGGAGGAGCATGTCCTCCAGCTaGTGGCCCAGACGGTCCATG +
Preference number: 4 (lower is better)
Translates to: LSLLSPVLGLGPLRSVWRSMSSS*WPRRSM
Trigger: CATGGACCGTCTGGGCCACCAGCTGGAGGACATGCT...CCTCCAAACAGACCTTAAAGGCCCAAGACCCAGGACAGGGGACAGCAAGCTCAG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000021045.13
CDS-3UTR CCA 90 bp GGGGCTATGCCACCTGAGCTTGCTGTCCCCTGTCCTGGGTCTTGGGCCTTTAAGGGCACGTTCACAGTGTaGCTGATGGTTTCGGAGTGG +
Preference number: 4 (lower is better)
Translates to: GAMPPELAVPCPGSWAFKGTFTV*LMVSEW
Trigger: CCACTCCGAAACCATCAGCCACACTGTGAACGTGCC...CTTAAAGGCCCAAGACCCAGGACAGGGGACAGCAAGCTCAGGTGGCATAGCCCC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000021045.13
ENSMUST00000066197.7
CDS-3UTR TCA 90 bp GGTTGGTACTGGTCACCTTTAGTGCAGGAGCCCAGTGGGCCAGTTTGGGGGACAAGAACCGGAAGCCATTaGGGTTGCAGAGGGTCACAG +
Preference number: 4 (lower is better)
Translates to: GWYWSPLVQEPSGPVWGTRTGSH*GCRGSQ
Trigger: CTGTGACCCTCTGCAACCTCAATGGCTTCCGGTTCT...TGTCCCCCAAACTGGCCCACTGGGCTCCTGCACTAAAGGTGACCAGTACCAACC
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000066197.7
CDS-3UTR GCA 90 bp CATGTACAAGACGCAAGTGGAGGCGGCGCTGTAAGAAGTCTGAGCATGCAGGTGGCAAGCCAAGGGACGTaGAGAAGGCCAGCACCCACA +
Preference number: 4 (lower is better)
Translates to: HVQDASGGGAVRSLSMQVASQGT*RRPAPT
Trigger: TGTGGGTGCTGGCCTTCTGCACGTCCCTTGGCTTGC...CACCTGCATGCTCAGACTTCTTACAGCGCCGCCTCCACTTGCGTCTTGTACATG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000021045.13
CDS-3UTR GCA 90 bp CATGTACAAGACGCAAGTGGAGGCGGCGCTGTAAGAAGTCTGAGCATGCAGGTGGCTCGCCCCGGTACTTaGAGGAGAGCAGCATGTCCT +
Preference number: 4 (lower is better)
Translates to: HVQDASGGGAVRSLSMQVARPGT*RRAACP
Trigger: AGGACATGCTGCTCTCCTGCAAGTACCGGGGCGAGC...CACCTGCATGCTCAGACTTCTTACAGCGCCGCCTCCACTTGCGTCTTGTACATG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000021045.13
CDS-3UTR GCA 90 bp CTGAGCTTGCTGTCCCCTGTCCTGGGTCTTGGGCCTTTAAGGTCTGTTTGGAGGTGTAGCGGGTCAGGTTaGAGGGTGTCCTGCAGAGAC +
Preference number: 4 (lower is better)
Translates to: LSLLSPVLGLGPLRSVWRCSGSG*RVSCRD
Trigger: GTCTCTGCAGGACACCCTGCAACCTGACCCGCTACA...CCTCCAAACAGACCTTAAAGGCCCAAGACCCAGGACAGGGGACAGCAAGCTCAG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000021045.13
ENSMUST00000066197.7
CDS-3UTR GCA 90 bp GTCACCCAGGCCACCGTACTTCCTCCACAGGTGCTGAGAAAAGAAGGAGGAGGTGTGCCCAAAGCTGTCTaGAGGGGCACGTTCACAGTG +
Preference number: 4 (lower is better)
Translates to: VTQATVLPPQVLRKEGGGVPKAV*RGTFTV
Trigger: CACTGTGAACGTGCCCCTGCAGACAGCTTTGGGCAC...ACCTCCTCCTTCTTTTCTCAGCACCTGTGGAGGAAGTACGGTGGCCTGGGTGAC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000021045.13
ENSMUST00000066197.7
CDS-3UTR CCA 90 bp CTGCAACCTGGTCCCACTGCCTGGGTAGCAGAGTGGGCTCCCTCCGGAAACCGCCTCATGTTCTCATCATaGCTCCCTTCCTCTTCTTCT +
Preference number: 4 (lower is better)
Translates to: LQPGPTAWVAEWAPSGNRLMFSS*LPSSSS
Trigger: AGAAGAAGAGGAAGGGAGCCATGATGAGAACATGAG...GCGGTTTCCGGAGGGAGCCCACTCTGCTACCCAGGCAGTGGGACCAGGTTGCAG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000021045.13
ENSMUST00000066197.7
CDS-3UTR CCA 90 bp GGTCACCCAGGCCACCGTACTTCCTCCACAGGTGCTGAGAAAAGAAGGAGGAGGATGTGGCGGATGCCATaGAGAGTAGAGGTGTTGGCG +
Preference number: 4 (lower is better)
Translates to: GHPGHRTSSTGAEKRRRRMWRMP*RVEVLA
Trigger: CGCCAACACCTCTACTCTCCATGGCATCCGCCACAT...CCTCCTCCTTCTTTTCTCAGCACCTGTGGAGGAAGTACGGTGGCCTGGGTGACC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000066197.7
3UTR CAA 72 bp GCTTCTTTCTGTCCTCAGGGGCTATGCCACCTGAGCTaGCTGTCCCCTGTCCTGGGTCTTGGGCCTTTAAGG +
Preference number: 4 (lower is better)
Translates to: ASFCPQGLCHLS*LSPVLGLGPLR
Trigger: CCTTAAAGGCCCAAGACCCAGGACAGGGGACAGCAAGCTCAGGTGGCATAGCCCCTGAGGACAGAAAGAAGC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000021045.13
ENSMUST00000066197.7
CDS-3UTR TCA 90 bp GGTCACCCAGGCCACCGTACTTCCTCCACAGGTGCTGAGAAAAGAAGGAGGAGGCGTTCACAGTGTGGCTaGTGGTTTCGGAGTGGTTTG +
Preference number: 4 (lower is better)
Translates to: GHPGHRTSSTGAEKRRRRRSQCG*WFRSGL
Trigger: CAAACCACTCCGAAACCATCAGCCACACTGTGAACG...CCTCCTCCTTCTTTTCTCAGCACCTGTGGAGGAAGTACGGTGGCCTGGGTGACC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000021045.13
ENSMUST00000066197.7
CDS-3UTR GCA 90 bp ACAAGGCTAGGAACCTTCACGAACAACACAAGGATCAAACGTTGTAGAGAGTTCCCAGCGGGCGCGCGGTaGGGTTGGGCAGCAGCAGTC +
Preference number: 4 (lower is better)
Translates to: TRLGTFTNNTRIKRCREFPAGAR*GWAAAV
Trigger: GACTGCTGCTGCCCAACCGCACCGCGCGCCCGCTGG...GAACTCTCTACAACGTTTGATCCTTGTGTTGTTCGTGAAGGTTCCTAGCCTTGT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000021045.13
CDS-3UTR GCA 90 bp CATGTACAAGACGCAAGTGGAGGCGGCGCTGTAAGAAGTCTGAGCATGCAGGTGTGTAGCGGGTCAGGTTaGAGGGTGTCCTGCAGAGAC +
Preference number: 4 (lower is better)
Translates to: HVQDASGGGAVRSLSMQVCSGSG*RVSCRD
Trigger: GTCTCTGCAGGACACCCTGCAACCTGACCCGCTACA...CACCTGCATGCTCAGACTTCTTACAGCGCCGCCTCCACTTGCGTCTTGTACATG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000021045.13
ENSMUST00000066197.7
CDS-3UTR GCA 90 bp AGGTTAGTTCTTGGACAGTTCCGGAGCGCGACTCATCGGTCCTATGAGGGACACCAATCTCCTCCAGGGTaGCCAAAGCTGTCTGCAGGG +
Preference number: 4 (lower is better)
Translates to: RLVLGQFRSATHRSYEGHQSPPG*PKLSAG
Trigger: CCCTGCAGACAGCTTTGGGCACCCTGGAGGAGATTG...GTGTCCCTCATAGGACCGATGAGTCGCGCTCCGGAACTGTCCAAGAACTAACCT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000021045.13
ENSMUST00000066197.7
CDS-3UTR GCA 90 bp TGGGCCAGTTTGGGGGACAAGGCTAGGAACCTTCACGAACAACACAAGGATCAATGGAAGGTTGCAGGCTaGCCTCGCTGGGGCTCTCCT +
Preference number: 4 (lower is better)
Translates to: WASLGDKARNLHEQHKDQWKVAG*PRWGSP
Trigger: AGGAGAGCCCCAGCGAGGGCAGCCTGCAACCTTCCA...TTGATCCTTGTGTTGTTCGTGAAGGTTCCTAGCCTTGTCCCCCAAACTGGCCCA
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000066197.7
CDS-3UTR GCA 90 bp CAGGCCACCGTACTTCCTCCACAGGTGCTGAGAAAAGAAGGAGGAGGTTGGTACTCATGGCCTACCCGGTaGAGGAACTCCAGCATGCTG +
Preference number: 4 (lower is better)
Translates to: QATVLPPQVLRKEGGGWYSWPTR*RNSSML
Trigger: CAGCATGCTGGAGTTCCTGCACCGGGTAGGCCATGA...GTACCAACCTCCTCCTTCTTTTCTCAGCACCTGTGGAGGAAGTACGGTGGCCTG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000066197.7
CDS-3UTR CCA 90 bp AGGTTAGTTCTTGGACAGTTCCGGAGCGCGACTCATCGGTCCTATGAGGGACACATGTCCTCCAGCTGGTaGCCCAGACGGTCCATGAAG +
Preference number: 4 (lower is better)
Translates to: RLVLGQFRSATHRSYEGHMSSSW*PRRSMK
Trigger: CTTCATGGACCGTCTGGGCCACCAGCTGGAGGACAT...GTGTCCCTCATAGGACCGATGAGTCGCGCTCCGGAACTGTCCAAGAACTAACCT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000021045.13
CDS-3UTR CCA 90 bp GGGGCTATGCCACCTGAGCTTGCTGTCCCCTGTCCTGGGTCTTGGGCCTTTAAGTGGCTGACGTCTTGCTaGGGATCTTTACCATGGAGA +
Preference number: 4 (lower is better)
Translates to: GAMPPELAVPCPGSWAFKWLTSC*GSLPWR
Trigger: TCTCCATGGTAAAGATCCCCAGCAAGACGTCAGCCA...CTTAAAGGCCCAAGACCCAGGACAGGGGACAGCAAGCTCAGGTGGCATAGCCCC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000021045.13
ENSMUST00000066197.7
CDS-3UTR CCA 90 bp CTGAGCTTGCTGTCCCCTGTCCTGGGTCTTGGGCCTTTAAGGTCTGTTTGGAGGGGCACGTTCACAGTGTaGCTGATGGTTTCGGAGTGG +
Preference number: 4 (lower is better)
Translates to: LSLLSPVLGLGPLRSVWRGTFTV*LMVSEW
Trigger: CCACTCCGAAACCATCAGCCACACTGTGAACGTGCC...CCTCCAAACAGACCTTAAAGGCCCAAGACCCAGGACAGGGGACAGCAAGCTCAG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000021045.13
ENSMUST00000066197.7
CDS-3UTR CCA 90 bp TGGGGTCACCCAGGCCACCGTACTTCCTCCACAGGTGCTGAGAAAAGAAGGAGGATATCCTTCAGGTCATaGCCTACCCGGTGCAGGAAC +
Preference number: 4 (lower is better)
Translates to: WGHPGHRTSSTGAEKRRRISFRS*PTRCRN
Trigger: GTTCCTGCACCGGGTAGGCCATGACCTGAAGGATAT...CCTCCTTCTTTTCTCAGCACCTGTGGAGGAAGTACGGTGGCCTGGGTGACCCCA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000066197.7
3UTR CAA 72 bp CTGGTCACCTTTAGTGCAGGAGCCCAGTGGGCCAGTTaGGGGGACAAGGCTAGGAACCTTCACGAACAACAC +
Preference number: 4 (lower is better)
Translates to: LVTFSAGAQWAS*GDKARNLHEQH
Trigger: GTGTTGTTCGTGAAGGTTCCTAGCCTTGTCCCCCAAACTGGCCCACTGGGCTCCTGCACTAAAGGTGACCAG
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000021045.13
ENSMUST00000066197.7
CDS-3UTR TCA 90 bp TACTGGTCACCTTTAGTGCAGGAGCCCAGTGGGCCAGTTTGGGGGACAAGGCTAGACTGGCTGTGGATCTaGACCTTCACTCCTGCTTCA +
Preference number: 4 (lower is better)
Translates to: YWSPLVQEPSGPVWGTRLDWLWI*TFTPAS
Trigger: TGAAGCAGGAGTGAAGGTTCAGATCCACAGCCAGTC...TAGCCTTGTCCCCCAAACTGGCCCACTGGGCTCCTGCACTAAAGGTGACCAGTA
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000021045.13
ENSMUST00000066197.7
CDS-3UTR GCA 90 bp TGGGGTCACCCAGGCCACCGTACTTCCTCCACAGGTGCTGAGAAAAGAAGGAGGAGATATGTGAGCCTCTaGTCTTGTGTGGCCACGAAG +
Preference number: 4 (lower is better)
Translates to: WGHPGHRTSSTGAEKRRRRYVSL*SCVATK
Trigger: CTTCGTGGCCACACAAGAGCAGAGGCTCACATATCT...CCTCCTTCTTTTCTCAGCACCTGTGGAGGAAGTACGGTGGCCTGGGTGACCCCA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000021045.13
ENSMUST00000066197.7
CDS-3UTR CCA 90 bp GGTTGGTACTGGTCACCTTTAGTGCAGGAGCCCAGTGGGCCAGTTTGGGGGACACTCTTGGATGAAAGGTaGCTCAGACTGGCTGTGGAT +
Preference number: 4 (lower is better)
Translates to: GWYWSPLVQEPSGPVWGTLLDER*LRLAVD
Trigger: ATCCACAGCCAGTCTGAGCCACCTTTCATCCAAGAG...TGTCCCCCAAACTGGCCCACTGGGCTCCTGCACTAAAGGTGACCAGTACCAACC
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000021045.13
ENSMUST00000066197.7
CDS-3UTR CCA 90 bp TTGGTACTGGTCACCTTTAGTGCAGGAGCCCAGTGGGCCAGTTTGGGGGACAAGTCTTCTCCAGGTACTTaGCTGACGTCTTGCTGGGGA +
Preference number: 4 (lower is better)
Translates to: LVLVTFSAGAQWASLGDKSSPGT*LTSCWG
Trigger: TCCCCAGCAAGACGTCAGCCAAGTACCTGGAGAAGA...CTTGTCCCCCAAACTGGCCCACTGGGCTCCTGCACTAAAGGTGACCAGTACCAA
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000021045.13
ENSMUST00000066197.7
CDS-3UTR CCA 90 bp GGTTGGTACTGGTCACCTTTAGTGCAGGAGCCCAGTGGGCCAGTTTGGGGGACACTGATGGTTTCGGAGTaGTTTGGCATTGTGTCGCAG +
Preference number: 4 (lower is better)
Translates to: GWYWSPLVQEPSGPVWGTLMVSE*FGIVSQ
Trigger: CTGCGACACAATGCCAAACCACTCCGAAACCATCAG...TGTCCCCCAAACTGGCCCACTGGGCTCCTGCACTAAAGGTGACCAGTACCAACC
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000021045.13
ENSMUST00000066197.7
CDS-3UTR TCA 90 bp GGGCCAGTTTGGGGGACAAGGCTAGGAACCTTCACGAACAACACAAGGATCAAATGTGTGACGGGAAACTaGGCCAGTAGAGCAGGCGGT +
Preference number: 4 (lower is better)
Translates to: GPVWGTRLGTFTNNTRIKCVTGN*ASRAGG
Trigger: ACCGCCTGCTCTACTGGCTCAGTTTCCCGTCACACA...TTTGATCCTTGTGTTGTTCGTGAAGGTTCCTAGCCTTGTCCCCCAAACTGGCCC
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000021045.13
CDS-3UTR TCA 90 bp GGGCCAGTTTGGGGGACAAGGCTAGGAACCTTCACGAACAACACAAGGATCAAAGTGCACTCGCGTGTGTaGCGGGAAACTGAGCCAGTA +
Preference number: 4 (lower is better)
Translates to: GPVWGTRLGTFTNNTRIKVHSRV*RETEPV
Trigger: TACTGGCTCAGTTTCCCGTCACACACGCGAGTGCAC...TTTGATCCTTGTGTTGTTCGTGAAGGTTCCTAGCCTTGTCCCCCAAACTGGCCC
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000021045.13
CDS-3UTR TCA 90 bp CAGGCCACCGTACTTCCTCCACAGGTGCTGAGAAAAGAAGGAGGAGGTTGGTACCGTTCACAGTGTGGCTaGTGGTTTCGGAGTGGTTTG +
Preference number: 4 (lower is better)
Translates to: QATVLPPQVLRKEGGGWYRSQCG*WFRSGL
Trigger: CAAACCACTCCGAAACCATCAGCCACACTGTGAACG...GTACCAACCTCCTCCTTCTTTTCTCAGCACCTGTGGAGGAAGTACGGTGGCCTG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000021045.13
ENSMUST00000066197.7
CDS-3UTR TCA 90 bp CAGGCCACCGTACTTCCTCCACAGGTGCTGAGAAAAGAAGGAGGAGGTTGGTACCAGGAATCTGCAAGTTaGCATCCAACAGGGCCAGCA +
Preference number: 4 (lower is better)
Translates to: QATVLPPQVLRKEGGGWYQESAS*HPTGPA
Trigger: TGCTGGCCCTGTTGGATGTCAACTTGCAGATTCCTG...GTACCAACCTCCTCCTTCTTTTCTCAGCACCTGTGGAGGAAGTACGGTGGCCTG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000066197.7
CDS-3UTR TCA 90 bp GGTTGGTACTGGTCACCTTTAGTGCAGGAGCCCAGTGGGCCAGTTTGGGGGACATCGGTTTGTAGTGTTTaGAGTTGGCCTTCTGTCGGA +
Preference number: 4 (lower is better)
Translates to: GWYWSPLVQEPSGPVWGTSVCSV*SWPSVG
Trigger: TCCGACAGAAGGCCAACTTCAAACACTACAAACCGA...TGTCCCCCAAACTGGCCCACTGGGCTCCTGCACTAAAGGTGACCAGTACCAACC
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000066197.7
CDS-3UTR TCA 90 bp TACTGGTCACCTTTAGTGCAGGAGCCCAGTGGGCCAGTTTGGGGGACAAGGCTAGGAACTCCAGCATGCTaGACTGCTTCGGTTTGTAGT +
Preference number: 4 (lower is better)
Translates to: YWSPLVQEPSGPVWGTRLGTPAC*TASVCS
Trigger: ACTACAAACCGAAGCAGTTCAGCATGCTGGAGTTCC...TAGCCTTGTCCCCCAAACTGGCCCACTGGGCTCCTGCACTAAAGGTGACCAGTA
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000066197.7
CDS-3UTR GCA 90 bp GTCACCCAGGCCACCGTACTTCCTCCACAGGTGCTGAGAAAAGAAGGAGGAGGTAGATATGTGAGCCTCTaGTCTTGTGTGGCCACGAAG +
Preference number: 4 (lower is better)
Translates to: VTQATVLPPQVLRKEGGGRYVSL*SCVATK
Trigger: CTTCGTGGCCACACAAGAGCAGAGGCTCACATATCT...ACCTCCTCCTTCTTTTCTCAGCACCTGTGGAGGAAGTACGGTGGCCTGGGTGAC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000021045.13
ENSMUST00000066197.7
CDS-3UTR CCA 90 bp CAGGCCACCGTACTTCCTCCACAGGTGCTGAGAAAAGAAGGAGGAGGTTGGTACTCTTCTCCAGGTACTTaGCTGACGTCTTGCTGGGGA +
Preference number: 4 (lower is better)
Translates to: QATVLPPQVLRKEGGGWYSSPGT*LTSCWG
Trigger: TCCCCAGCAAGACGTCAGCCAAGTACCTGGAGAAGA...GTACCAACCTCCTCCTTCTTTTCTCAGCACCTGTGGAGGAAGTACGGTGGCCTG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000021045.13
ENSMUST00000066197.7
CDS-3UTR CCA 90 bp CAGGCCACCGTACTTCCTCCACAGGTGCTGAGAAAAGAAGGAGGAGGTTGGTACGTGTTGGCGAAGATCTaGATGCTGGAAGGTTGCAGG +
Preference number: 4 (lower is better)
Translates to: QATVLPPQVLRKEGGGWYVLAKI*MLEGCR
Trigger: CCTGCAACCTTCCAGCATCCAGATCTTCGCCAACAC...GTACCAACCTCCTCCTTCTTTTCTCAGCACCTGTGGAGGAAGTACGGTGGCCTG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000066197.7
3UTR CAA 72 bp ACTTCCTCCACAGGTGCTGAGAAAAGAAGGAGGAGGTaGGTACTGGTCACCTTTAGTGCAGGAGCCCAGTGG +
Preference number: 4 (lower is better)
Translates to: TSSTGAEKRRRR*VLVTFSAGAQW
Trigger: CCACTGGGCTCCTGCACTAAAGGTGACCAGTACCAACCTCCTCCTTCTTTTCTCAGCACCTGTGGAGGAAGT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000021045.13
ENSMUST00000066197.7
CDS-3UTR TCA 90 bp AGGTTAGTTCTTGGACAGTTCCGGAGCGCGACTCATCGGTCCTATGAGGGACACCGATCCGACAGGCTGTaGTGCTGTAAACAGGAAAGA +
Preference number: 4 (lower is better)
Translates to: RLVLGQFRSATHRSYEGHRSDRL*CCKQER
Trigger: TCTTTCCTGTTTACAGCATCACAGCCTGTCGGATCG...GTGTCCCTCATAGGACCGATGAGTCGCGCTCCGGAACTGTCCAAGAACTAACCT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000021045.13
ENSMUST00000066197.7
CDS-3UTR TCA 90 bp CATGTACAAGACGCAAGTGGAGGCGGCGCTGTAAGAAGTCTGAGCATGCAGGTGCGATCCGACAGGCTGTaGTGCTGTAAACAGGAAAGA +
Preference number: 4 (lower is better)
Translates to: HVQDASGGGAVRSLSMQVRSDRL*CCKQER
Trigger: TCTTTCCTGTTTACAGCATCACAGCCTGTCGGATCG...CACCTGCATGCTCAGACTTCTTACAGCGCCGCCTCCACTTGCGTCTTGTACATG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000021045.13
ENSMUST00000066197.7
CDS-3UTR GCA 90 bp AACACAAGGATCAAACGTTGTAGAGAGTTCTGTGGTTTCCTTCTTGACAGTGCATGCGGAACCACTGTCTaGGCGGCTCGTCGCCCCGCA +
Preference number: 4 (lower is better)
Translates to: NTRIKRCREFCGFLLDSACGTTV*AARRPA
Trigger: TGCGGGGCGACGAGCCGCGCAGACAGTGGTTCCGCA...TGCACTGTCAAGAAGGAAACCACAGAACTCTCTACAACGTTTGATCCTTGTGTT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000021045.13
CDS-3UTR CCA 90 bp TGGGGTCACCCAGGCCACCGTACTTCCTCCACAGGTGCTGAGAAAAGAAGGAGGTGGGGATCTTTACCATaGAGAGCTCTTTGTTGTAGC +
Preference number: 4 (lower is better)
Translates to: WGHPGHRTSSTGAEKRRRWGSLP*RALCCS
Trigger: GCTACAACAAAGAGCTCTCCATGGTAAAGATCCCCA...CCTCCTTCTTTTCTCAGCACCTGTGGAGGAAGTACGGTGGCCTGGGTGACCCCA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000021045.13
ENSMUST00000066197.7
CDS-3UTR GCA 90 bp CAGGCCACCGTACTTCCTCCACAGGTGCTGAGAAAAGAAGGAGGAGGTTGGTACCTGAACCTTCACTCCTaGTTCAAACGTTGTTTCCTC +
Preference number: 4 (lower is better)
Translates to: QATVLPPQVLRKEGGGWYLNLHS*FKRCFL
Trigger: GAGGAAACAACGTTTGAAGCAGGAGTGAAGGTTCAG...GTACCAACCTCCTCCTTCTTTTCTCAGCACCTGTGGAGGAAGTACGGTGGCCTG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000021045.13
ENSMUST00000066197.7
CDS-3UTR GCA 90 bp TTGGTACTGGTCACCTTTAGTGCAGGAGCCCAGTGGGCCAGTTTGGGGGACAAGTGCAGAGACAGTAATTaGTGTCCTTTTCTGCCAGTA +
Preference number: 4 (lower is better)
Translates to: LVLVTFSAGAQWASLGDKCRDSN*CPFLPV
Trigger: TACTGGCAGAAAAGGACAGCAATTACTGTCTCTGCA...CTTGTCCCCCAAACTGGCCCACTGGGCTCCTGCACTAAAGGTGACCAGTACCAA
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000021045.13
ENSMUST00000066197.7
CDS-3UTR GCA 90 bp TGGGCCAGTTTGGGGGACAAGGCTAGGAACCTTCACGAACAACACAAGGATCAAGGTTGCAGGGTGTCCTaGAGAGACAGTAATTGCTGT +
Preference number: 4 (lower is better)
Translates to: WASLGDKARNLHEQHKDQGCRVS*RDSNCC
Trigger: ACAGCAATTACTGTCTCTGCAGGACACCCTGCAACC...TTGATCCTTGTGTTGTTCGTGAAGGTTCCTAGCCTTGTCCCCCAAACTGGCCCA
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000021045.13
ENSMUST00000066197.7
CDS-3UTR CCA 90 bp CATGTACAAGACGCAAGTGGAGGCGGCGCTGTAAGAAGTCTGAGCATGCAGGTGTGGGGATCTTTACCATaGAGAGCTCTTTGTTGTAGC +
Preference number: 4 (lower is better)
Translates to: HVQDASGGGAVRSLSMQVWGSLP*RALCCS
Trigger: GCTACAACAAAGAGCTCTCCATGGTAAAGATCCCCA...CACCTGCATGCTCAGACTTCTTACAGCGCCGCCTCCACTTGCGTCTTGTACATG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000021045.13
ENSMUST00000066197.7
CDS-3UTR GCA 90 bp AGGTTAGTTCTTGGACAGTTCCGGAGCGCGACTCATCGGTCCTATGAGGGACACCTTCCTCTTCTTCTTTaGCAAGCAGGTCTAATAGCT +
Preference number: 4 (lower is better)
Translates to: RLVLGQFRSATHRSYEGHLPLLL*QAGLIA
Trigger: AGCTATTAGACCTGCTTGGCAAAGAAGAAGAGGAAG...GTGTCCCTCATAGGACCGATGAGTCGCGCTCCGGAACTGTCCAAGAACTAACCT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000021045.13
ENSMUST00000066197.7
CDS-3UTR CCA 90 bp ACAAGGCTAGGAACCTTCACGAACAACACAAGGATCAAACGTTGTAGAGAGTTCAAAGCACACGCCGGATaGTCAGCGGCCCATACACGA +
Preference number: 4 (lower is better)
Translates to: TRLGTFTNNTRIKRCREFKAHAG*SAAHTR
Trigger: TCGTGTATGGGCCGCTGACCATCCGGCGTGTGCTTT...GAACTCTCTACAACGTTTGATCCTTGTGTTGTTCGTGAAGGTTCCTAGCCTTGT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000066197.7
CDS-3UTR GCA 90 bp ACAAGGCTAGGAACCTTCACGAACAACACAAGGATCAAACGTTGTAGAGAGTTCTGGCGAAGATCTGGATaGTGGAAGGTTGCAGGCTGC +
Preference number: 4 (lower is better)
Translates to: TRLGTFTNNTRIKRCREFWRRSG*WKVAGC
Trigger: GCAGCCTGCAACCTTCCAGCATCCAGATCTTCGCCA...GAACTCTCTACAACGTTTGATCCTTGTGTTGTTCGTGAAGGTTCCTAGCCTTGT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000066197.7
CDS-3UTR TCA 90 bp CTACATCTGTGTCACAGGGAGAGAACAAAGTGGCTCCATGGACAAATACTGGGGCTTGCCATCCTCGCCTaGGTTAAACATGTAACACTT +
Preference number: 4 (lower is better)
Translates to: LHLCHRERTKWLHGQILGLAILA*VKHVTL
Trigger: AAGTGTTACATGTTTAACTCAGGCGAGGATGGCAAG...CCCCAGTATTTGTCCATGGAGCCACTTTGTTCTCTCCCTGTGACACAGATGTAG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000021045.13
ENSMUST00000066197.7
CDS-3UTR TCA 90 bp ACAAGGCTAGGAACCTTCACGAACAACACAAGGATCAAACGTTGTAGAGAGTTCCACACTCCTGCCCCTTaGACTTGCAGTAGAGCATCA +
Preference number: 4 (lower is better)
Translates to: TRLGTFTNNTRIKRCREFHTPAP*TCSRAS
Trigger: TGATGCTCTACTGCAAGTTCAAGGGGCAGGAGTGTG...GAACTCTCTACAACGTTTGATCCTTGTGTTGTTCGTGAAGGTTCCTAGCCTTGT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000066197.7
CDS-3UTR GCA 90 bp CTACATCTGTGTCACAGGGAGAGAACAAAGTGGCTCCATGGACAAATACTGGGGCTTCCTCTTCTTCTTTaGCAAGCAGGTCTAATAGCT +
Preference number: 4 (lower is better)
Translates to: LHLCHRERTKWLHGQILGLPLLL*QAGLIA
Trigger: AGCTATTAGACCTGCTTGGCAAAGAAGAAGAGGAAG...CCCCAGTATTTGTCCATGGAGCCACTTTGTTCTCTCCCTGTGACACAGATGTAG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000021045.13
ENSMUST00000066197.7
CDS-3UTR CCA 90 bp ACAAGGCTAGGAACCTTCACGAACAACACAAGGATCAAACGTTGTAGAGAGTTCCTGATGGTTTCGGAGTaGTTTGGCATTGTGTCGCAG +
Preference number: 4 (lower is better)
Translates to: TRLGTFTNNTRIKRCREFLMVSE*FGIVSQ
Trigger: CTGCGACACAATGCCAAACCACTCCGAAACCATCAG...GAACTCTCTACAACGTTTGATCCTTGTGTTGTTCGTGAAGGTTCCTAGCCTTGT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000021045.13
ENSMUST00000066197.7
CDS-3UTR CCA 90 bp AAACCCAAACCGAACCTTAGAACATCAAAAACCAAAGACCGTAAGACGAAGCAACGAAGATCTGGATGCTaGAAGGTTGCAGGCTGCCCT +
Preference number: 4 (lower is better)
Translates to: KPKPNLRTSKTKDRKTKQRRSGC*KVAGCP
Trigger: AGGGCAGCCTGCAACCTTCCAGCATCCAGATCTTCG...TTGCTTCGTCTTACGGTCTTTGGTTTTTGATGTTCTAAGGTTCGGTTTGGGTTT
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000066197.7
CDS-3UTR TCA 90 bp GGGCCAGTTTGGGGGACAAGGCTAGGAACCTTCACGAACAACACAAGGATCAAAGGTAACATGCTGATATaGGAAATAGTAGGATACTCT +
Preference number: 4 (lower is better)
Translates to: GPVWGTRLGTFTNNTRIKGNMLI*EIVGYS
Trigger: AGAGTATCCTACTATTTCTCATATCAGCATGTTACC...TTTGATCCTTGTGTTGTTCGTGAAGGTTCCTAGCCTTGTCCCCCAAACTGGCCC
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000066197.7
CDS-3UTR GCA 90 bp AACACAAGGATCAAACGTTGTAGAGAGTTCTGTGGTTTCCTTCTTGACAGTGCAGGTTGCAGGGTGTCCTaGAGAGACAGTAATTGCTGT +
Preference number: 4 (lower is better)
Translates to: NTRIKRCREFCGFLLDSAGCRVS*RDSNCC
Trigger: ACAGCAATTACTGTCTCTGCAGGACACCCTGCAACC...TGCACTGTCAAGAAGGAAACCACAGAACTCTCTACAACGTTTGATCCTTGTGTT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000021045.13
ENSMUST00000066197.7
CDS-3UTR TCA 90 bp ACAAGGCTAGGAACCTTCACGAACAACACAAGGATCAAACGTTGTAGAGAGTTCCTTGCCATCCTCGCCTaGGTTAAACATGTAACACTT +
Preference number: 4 (lower is better)
Translates to: TRLGTFTNNTRIKRCREFLAILA*VKHVTL
Trigger: AAGTGTTACATGTTTAACTCAGGCGAGGATGGCAAG...GAACTCTCTACAACGTTTGATCCTTGTGTTGTTCGTGAAGGTTCCTAGCCTTGT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000021045.13
ENSMUST00000066197.7
CDS-3UTR GCA 90 bp ACAAGGCTAGGAACCTTCACGAACAACACAAGGATCAAACGTTGTAGAGAGTTCCTGAACCTTCACTCCTaGTTCAAACGTTGTTTCCTC +
Preference number: 4 (lower is better)
Translates to: TRLGTFTNNTRIKRCREFLNLHS*FKRCFL
Trigger: GAGGAAACAACGTTTGAAGCAGGAGTGAAGGTTCAG...GAACTCTCTACAACGTTTGATCCTTGTGTTGTTCGTGAAGGTTCCTAGCCTTGT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000021045.13
ENSMUST00000066197.7
CDS-3UTR CCA 90 bp AAACCCAAACCGAACCTTAGAACATCAAAAACCAAAGACCGTAAGACGAAGCAATGGCTGACGTCTTGCTaGGGATCTTTACCATGGAGA +
Preference number: 4 (lower is better)
Translates to: KPKPNLRTSKTKDRKTKQWLTSC*GSLPWR
Trigger: TCTCCATGGTAAAGATCCCCAGCAAGACGTCAGCCA...TTGCTTCGTCTTACGGTCTTTGGTTTTTGATGTTCTAAGGTTCGGTTTGGGTTT
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000021045.13
ENSMUST00000066197.7
CDS-3UTR CCA 90 bp AAACCCAAACCGAACCTTAGAACATCAAAAACCAAAGACCGTAAGACGAAGCAACCATACACGAAGATGTaGCGGATGCCATGGAGAGTA +
Preference number: 4 (lower is better)
Translates to: KPKPNLRTSKTKDRKTKQPYTKM*RMPWRV
Trigger: TACTCTCCATGGCATCCGCCACATCTTCGTGTATGG...TTGCTTCGTCTTACGGTCTTTGGTTTTTGATGTTCTAAGGTTCGGTTTGGGTTT
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000066197.7
CDS-3UTR CCA 90 bp AACACAAGGATCAAACGTTGTAGAGAGTTCTGTGGTTTCCTTCTTGACAGTGCACTCATGTTCTCATCATaGCTCCCTTCCTCTTCTTCT +
Preference number: 4 (lower is better)
Translates to: NTRIKRCREFCGFLLDSALMFSS*LPSSSS
Trigger: AGAAGAAGAGGAAGGGAGCCATGATGAGAACATGAG...TGCACTGTCAAGAAGGAAACCACAGAACTCTCTACAACGTTTGATCCTTGTGTT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000021045.13
ENSMUST00000066197.7
CDS-3UTR GCA 90 bp AACACAAGGATCAAACGTTGTAGAGAGTTCTGTGGTTTCCTTCTTGACAGTGCATGCAGAGACAGTAATTaGTGTCCTTTTCTGCCAGTA +
Preference number: 4 (lower is better)
Translates to: NTRIKRCREFCGFLLDSACRDSN*CPFLPV
Trigger: TACTGGCAGAAAAGGACAGCAATTACTGTCTCTGCA...TGCACTGTCAAGAAGGAAACCACAGAACTCTCTACAACGTTTGATCCTTGTGTT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000021045.13
ENSMUST00000066197.7
CDS GCA 90 bp GAGCCTCCCGCCGCCGTGCGCCCCGCGCACATGTGCCGCAGCCCGTaGAATTTAGTGCGACTCAGGGACGGCCGCCCCCTGCGGGCGACC +
Preference number: 5 (lower is better)
Translates to: EPPAAVRPAHMCRSP*NLVRLRDGRPLRAT
Trigger: GGTCGCCCGCAGGGGGCGGCCGTCCCTGAGTCGCACTAAATTGCACGGGCTGCGGCACATGTGCGCGGGGCGCACGGCGGCGGGAGGCTC
76% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000021045.13
CDS TCA 90 bp TGCGGAACCACTGTCTGCGCGGCTCGTCGCCCCGCAGCAGCTCGCTaGCCAGCGGGCGCGCGGTGCGGTTGGGCAGCAGCAGTCCTAGCC +
Preference number: 5 (lower is better)
Translates to: CGTTVCAARRPAAAR*PAGARCGWAAAVLA
Trigger: GGCTAGGACTGCTGCTGCCCAACCGCACCGCGCGCCCGCTGGTCAGCGAGCTGCTGCGGGGCGACGAGCCGCGCAGACAGTGGTTCCGCA
73% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000021045.13
CDS GCA 90 bp CGCCGCTGGAAAGAGCCTCCCGCCGCCGTGCGCCCCGCGCACATGTaGCGCAGCCCGTGCAATTTAGTGCGACTCAGGGACGGCCGCCCC +
Preference number: 5 (lower is better)
Translates to: RRWKEPPAAVRPAHM*RSPCNLVRLRDGRP
Trigger: GGGGCGGCCGTCCCTGAGTCGCACTAAATTGCACGGGCTGCGGCACATGTGCGCGGGGCGCACGGCGGCGGGAGGCTCTTTCCAGCGGCG
73% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000021045.13
CDS CCA 90 bp AAGCCAAGGGACGTGCAGAAGGCCAGCACCCACAGCGCCCGCCGCTaGAAAGAGCCTCCCGCCGCCGTGCGCCCCGCGCACATGTGCCGC +
Preference number: 5 (lower is better)
Translates to: KPRDVQKASTHSARR*KEPPAAVRPAHMCR
Trigger: GCGGCACATGTGCGCGGGGCGCACGGCGGCGGGAGGCTCTTTCCAGCGGCGGGCGCTGTGGGTGCTGGCCTTCTGCACGTCCCTTGGCTT
73% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000021045.13
CDS GCA 90 bp CCTCGAAGTGGCGCGGCGGCAGGAAGAGGCGGAAGTCGGCCAGCTTaGGGAACCACTGTCTGCGCGGCTCGTCGCCCCGCAGCAGCTCGC +
Preference number: 5 (lower is better)
Translates to: PRSGAAAGRGGSRPA*GTTVCAARRPAAAR
Trigger: GCGAGCTGCTGCGGGGCGACGAGCCGCGCAGACAGTGGTTCCGCAAGCTGGCCGACTTCCGCCTCTTCCTGCCGCCGCGCCACTTCGAGG
72% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000021045.13
CDS TCA 90 bp CCTTGGAGAGGCGCGGGAAGCGCAGGGGGTTGTTGTTGCACACGGTaGCAGCGGGGAACGGCAGCTGGCGGCTCCACTCGCGGTGCACTC +
Preference number: 5 (lower is better)
Translates to: PWRGAGSAGGCCCTR*QRGTAAGGSTRGAL
Trigger: GAGTGCACCGCGAGTGGAGCCGCCAGCTGCCGTTCCCCGCTGTCACCGTGTGCAACAACAACCCCCTGCGCTTCCCGCGCCTCTCCAAGG
69% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000021045.13
CDS CCA 90 bp TGGTGGCCCAGACGGTCCATGAAGGCAGCGCTGATGCCCTCGAAGTaGCGCGGCGGCAGGAAGAGGCGGAAGTCGGCCAGCTTGCGGAAC +
Preference number: 5 (lower is better)
Translates to: WWPRRSMKAALMPSK*RGGRKRRKSASLRN
Trigger: GTTCCGCAAGCTGGCCGACTTCCGCCTCTTCCTGCCGCCGCGCCACTTCGAGGGCATCAGCGCTGCCTTCATGGACCGTCTGGGCCACCA
68% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000021045.13
CDS TCA 90 bp GGGGAACGGCAGCTGGCGGCTCCACTCGCGGTGCACTCGCGTGTGTaGCGGGAAACTGAGCCAGTAGAGCAGGCGGTTCGAGGACCAGGA +
Preference number: 5 (lower is better)
Translates to: GERQLAAPLAVHSRV*RETEPVEQAVRGPG
Trigger: TCCTGGTCCTCGAACCGCCTGCTCTACTGGCTCAGTTTCCCGTCACACACGCGAGTGCACCGCGAGTGGAGCCGCCAGCTGCCGTTCCCC
67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000021045.13
CDS CCA 90 bp CGCAGGGGGTTGTTGTTGCACACGGTGACAGCGGGGAACGGCAGCTaGCGGCTCCACTCGCGGTGCACTCGCGTGTGTGACGGGAAACTG +
Preference number: 5 (lower is better)
Translates to: RRGLLLHTVTAGNGS*RLHSRCTRVCDGKL
Trigger: CAGTTTCCCGTCACACACGCGAGTGCACCGCGAGTGGAGCCGCCAGCTGCCGTTCCCCGCTGTCACCGTGTGCAACAACAACCCCCTGCG
67% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000021045.13
CDS GCA 90 bp AGAGCAGGCGGTTCGAGGACCAGGACAACAGCAAGCCAAGGGACGTaGAGAAGGCCAGCACCCACAGCGCCCGCCGCTGGAAAGAGCCTC +
Preference number: 5 (lower is better)
Translates to: RAGGSRTRTTASQGT*RRPAPTAPAAGKSL
Trigger: GAGGCTCTTTCCAGCGGCGGGCGCTGTGGGTGCTGGCCTTCTGCACGTCCCTTGGCTTGCTGTTGTCCTGGTCCTCGAACCGCCTGCTCT
66% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000021045.13
CDS TCA 90 bp GCTGGCGGCTCCACTCGCGGTGCACTCGCGTGTGTGACGGGAAACTaGGCCAGTAGAGCAGGCGGTTCGAGGACCAGGACAACAGCAAGC +
Preference number: 5 (lower is better)
Translates to: AGGSTRGALACVTGN*ASRAGGSRTRTTAS
Trigger: GCTTGCTGTTGTCCTGGTCCTCGAACCGCCTGCTCTACTGGCTCAGTTTCCCGTCACACACGCGAGTGCACCGCGAGTGGAGCCGCCAGC
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000021045.13
CDS GCA 90 bp CGAGCTCTCCACCAGCAGCAGGCCCAGAGATCCCACGAAGGCCACTaGCCAAAGCACACGCCGGATGGTCAGCGGCCCATACACGAAGAT +
Preference number: 5 (lower is better)
Translates to: RALHQQQAQRSHEGH*PKHTPDGQRPIHED
Trigger: ATCTTCGTGTATGGGCCGCTGACCATCCGGCGTGTGCTTTGGGCAGTGGCCTTCGTGGGATCTCTGGGCCTGCTGCTGGTGGAGAGCTCG
63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000066197.7
CDS GCA 90 bp AGGGCCTCCAGCACGGTGGGGTCCGCCAGATGCGGGTCAGGAATCTaGAAGTTGACATCCAACAGGGCCAGCAACTCCCCAGCGTGGTAC +
Preference number: 5 (lower is better)
Translates to: RASSTVGSARCGSGI*KLTSNRASNSPAWY
Trigger: GTACCACGCTGGGGAGTTGCTGGCCCTGTTGGATGTCAACTTGCAGATTCCTGACCCGCATCTGGCGGACCCCACCGTGCTGGAGGCCCT
63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000066197.7
CDS CCA 90 bp GGCCCAGAGATCCCACGAAGGCCACTGCCCAAAGCACACGCCGGATaGTCAGCGGCCCATACACGAAGATGTGGCGGATGCCATGGAGAG +
Preference number: 5 (lower is better)
Translates to: GPEIPRRPLPKAHAG*SAAHTRRCGGCHGE
Trigger: CTCTCCATGGCATCCGCCACATCTTCGTGTATGGGCCGCTGACCATCCGGCGTGTGCTTTGGGCAGTGGCCTTCGTGGGATCTCTGGGCC
63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000066197.7
CDS GCA 90 bp TTGGCCTTCTGTCGGAGGGCCTCCAGCACGGTGGGGTCCGCCAGATaGGGGTCAGGAATCTGCAAGTTGACATCCAACAGGGCCAGCAAC +
Preference number: 5 (lower is better)
Translates to: LAFCRRASSTVGSAR*GSGICKLTSNRASN
Trigger: GTTGCTGGCCCTGTTGGATGTCAACTTGCAGATTCCTGACCCGCATCTGGCGGACCCCACCGTGCTGGAGGCCCTCCGACAGAAGGCCAA
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000066197.7
CDS-3UTR CAA 90 bp GGGGTCACCCAGGCCACCGTACTTCCTCCACAGGTGCTGAGAAAAGAAGGAGGACGGAAGTCGGCCAGCTaGCGGAACCACTGTCTGCGC +
Preference number: 5 (lower is better)
Translates to: GVTQATVLPPQVLRKEGGRKSAS*RNHCLR
Trigger: GCGCAGACAGTGGTTCCGCAAGCTGGCCGACTTCCG...TCCTCCTTCTTTTCTCAGCACCTGTGGAGGAAGTACGGTGGCCTGGGTGACCCC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000021045.13
CDS-3UTR CAA 90 bp GGAGCCCAGTGGGCCAGTTTGGGGGACAAGGCTAGGAACCTTCACGAACAACACGGGAAGCGCAGGGGGTaGTTGTTGCACACGGTGACA +
Preference number: 5 (lower is better)
Translates to: GAQWASLGDKARNLHEQHGKRRG*LLHTVT
Trigger: TGTCACCGTGTGCAACAACAACCCCCTGCGCTTCCC...GTGTTGTTCGTGAAGGTTCCTAGCCTTGTCCCCCAAACTGGCCCACTGGGCTCC
60% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000021045.13
CDS-3UTR CAA 90 bp GGGGCTATGCCACCTGAGCTTGCTGTCCCCTGTCCTGGGTCTTGGGCCTTTAAGCACTGTGGTGAAGTCTaGATGCCCACACTCCTGCCC +
Preference number: 5 (lower is better)
Translates to: GAMPPELAVPCPGSWAFKHCGEV*MPTLLP
Trigger: GGGCAGGAGTGTGGGCATCAAGACTTCACCACAGTG...CTTAAAGGCCCAAGACCCAGGACAGGGGACAGCAAGCTCAGGTGGCATAGCCCC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000066197.7
CDS CCA 90 bp TCCTCCAGGGTGCCCAAAGCTGTCTGCAGGGGCACGTTCACAGTGTaGCTGATGGTTTCGGAGTGGTTTGGCATTGTGTCGCAGGTGCTC +
Preference number: 5 (lower is better)
Translates to: SSRVPKAVCRGTFTV*LMVSEWFGIVSQVL
Trigger: GAGCACCTGCGACACAATGCCAAACCACTCCGAAACCATCAGCCACACTGTGAACGTGCCCCTGCAGACAGCTTTGGGCACCCTGGAGGA
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000021045.13
ENSMUST00000066197.7
CDS-3UTR CAA 90 bp GGTTGGTACTGGTCACCTTTAGTGCAGGAGCCCAGTGGGCCAGTTTGGGGGACAGTGGTGAGCAGAGGCTaGCCATCCTCGCCTGAGTTA +
Preference number: 5 (lower is better)
Translates to: GWYWSPLVQEPSGPVWGTVVSRG*PSSPEL
Trigger: TAACTCAGGCGAGGATGGCAAGCCTCTGCTCACCAC...TGTCCCCCAAACTGGCCCACTGGGCTCCTGCACTAAAGGTGACCAGTACCAACC
59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000021045.13
ENSMUST00000066197.7
CDS TCA 90 bp CCAGGGTGCCCAAAGCTGTCTGCAGGGGCACGTTCACAGTGTGGCTaGTGGTTTCGGAGTGGTTTGGCATTGTGTCGCAGGTGCTCATGT +
Preference number: 5 (lower is better)
Translates to: PGCPKLSAGARSQCG*WFRSGLALCRRCSC
Trigger: ACATGAGCACCTGCGACACAATGCCAAACCACTCCGAAACCATCAGCCACACTGTGAACGTGCCCCTGCAGACAGCTTTGGGCACCCTGG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000021045.13
ENSMUST00000066197.7
CDS-3UTR CAA 90 bp GGTCACCCAGGCCACCGTACTTCCTCCACAGGTGCTGAGAAAAGAAGGAGGAGGTGGTTTCGGAGTGGTTaGGCATTGTGTCGCAGGTGC +
Preference number: 5 (lower is better)
Translates to: GHPGHRTSSTGAEKRRRRWFRSG*ALCRRC
Trigger: GCACCTGCGACACAATGCCAAACCACTCCGAAACCA...CCTCCTCCTTCTTTTCTCAGCACCTGTGGAGGAAGTACGGTGGCCTGGGTGACC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000021045.13
ENSMUST00000066197.7
CDS-3UTR CAA 90 bp TACTGGTCACCTTTAGTGCAGGAGCCCAGTGGGCCAGTTTGGGGGACAAGGCTATTCTTCTCCAGGTACTaGGCTGACGTCTTGCTGGGG +
Preference number: 5 (lower is better)
Translates to: YWSPLVQEPSGPVWGTRLFFSRY*ADVLLG
Trigger: CCCCAGCAAGACGTCAGCCAAGTACCTGGAGAAGAA...TAGCCTTGTCCCCCAAACTGGCCCACTGGGCTCCTGCACTAAAGGTGACCAGTA
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000021045.13
ENSMUST00000066197.7
CDS-3UTR CAA 90 bp GTCACCCAGGCCACCGTACTTCCTCCACAGGTGCTGAGAAAAGAAGGAGGAGGTTTCTTCTCCAGGTACTaGGCTGACGTCTTGCTGGGG +
Preference number: 5 (lower is better)
Translates to: VTQATVLPPQVLRKEGGGFFSRY*ADVLLG
Trigger: CCCCAGCAAGACGTCAGCCAAGTACCTGGAGAAGAA...ACCTCCTCCTTCTTTTCTCAGCACCTGTGGAGGAAGTACGGTGGCCTGGGTGAC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000021045.13
ENSMUST00000066197.7
CDS-3UTR CAA 90 bp CTGAGCTTGCTGTCCCCTGTCCTGGGTCTTGGGCCTTTAAGGTCTGTTTGGAGGCGGAGTGGTTTGGCATaGTGTCGCAGGTGCTCATGT +
Preference number: 5 (lower is better)
Translates to: LSLLSPVLGLGPLRSVWRRSGLA*CRRCSC
Trigger: ACATGAGCACCTGCGACACAATGCCAAACCACTCCG...CCTCCAAACAGACCTTAAAGGCCCAAGACCCAGGACAGGGGACAGCAAGCTCAG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000021045.13
ENSMUST00000066197.7
CDS-3UTR CAA 90 bp TGGGGTCACCCAGGCCACCGTACTTCCTCCACAGGTGCTGAGAAAAGAAGGAGGTCAGGAATCTGCAAGTaGACATCCAACAGGGCCAGC +
Preference number: 5 (lower is better)
Translates to: WGHPGHRTSSTGAEKRRRSGICK*TSNRAS
Trigger: GCTGGCCCTGTTGGATGTCAACTTGCAGATTCCTGA...CCTCCTTCTTTTCTCAGCACCTGTGGAGGAAGTACGGTGGCCTGGGTGACCCCA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000066197.7
CDS GCA 90 bp TGTTGTAGCGGGTCAGGTTGCAGGGTGTCCTGCAGAGACAGTAATTaGTGTCCTTTTCTGCCAGTAAGCCGAGGGCTGGCTCTGCACACT +
Preference number: 5 (lower is better)
Translates to: CCSGSGCRVSCRDSN*CPFLPVSRGLALHT
Trigger: AGTGTGCAGAGCCAGCCCTCGGCTTACTGGCAGAAAAGGACAGCAATTACTGTCTCTGCAGGACACCCTGCAACCTGACCCGCTACAACA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000021045.13
ENSMUST00000066197.7
CDS CCA 90 bp CTGCAGGGGCACGTTCACAGTGTGGCTGATGGTTTCGGAGTGGTTTaGCATTGTGTCGCAGGTGCTCATGTTCTCATCATGGCTCCCTTC +
Preference number: 5 (lower is better)
Translates to: LQGHVHSVADGFGVV*HCVAGAHVLIMAPF
Trigger: GAAGGGAGCCATGATGAGAACATGAGCACCTGCGACACAATGCCAAACCACTCCGAAACCATCAGCCACACTGTGAACGTGCCCCTGCAG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000021045.13
ENSMUST00000066197.7
CDS CCA 90 bp GCTGTCTGCAGGGGCACGTTCACAGTGTGGCTGATGGTTTCGGAGTaGTTTGGCATTGTGTCGCAGGTGCTCATGTTCTCATCATGGCTC +
Preference number: 5 (lower is better)
Translates to: AVCRGTFTVWLMVSE*FGIVSQVLMFSSWL
Trigger: GAGCCATGATGAGAACATGAGCACCTGCGACACAATGCCAAACCACTCCGAAACCATCAGCCACACTGTGAACGTGCCCCTGCAGACAGC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000021045.13
ENSMUST00000066197.7
CDS-3UTR CAA 90 bp CTGAGCTTGCTGTCCCCTGTCCTGGGTCTTGGGCCTTTAAGGTCTGTTTGGAGGCTCCTGCTTCAAACGTaGTTTCCTCTGTCTCTCCCC +
Preference number: 5 (lower is better)
Translates to: LSLLSPVLGLGPLRSVWRLLLQT*FPLSLP
Trigger: GGGGAGAGACAGAGGAAACAACGTTTGAAGCAGGAG...CCTCCAAACAGACCTTAAAGGCCCAAGACCCAGGACAGGGGACAGCAAGCTCAG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000021045.13
ENSMUST00000066197.7
CDS-3UTR CAA 90 bp CATGTACAAGACGCAAGTGGAGGCGGCGCTGTAAGAAGTCTGAGCATGCAGGTGCGGAGTGGTTTGGCATaGTGTCGCAGGTGCTCATGT +
Preference number: 5 (lower is better)
Translates to: HVQDASGGGAVRSLSMQVRSGLA*CRRCSC
Trigger: ACATGAGCACCTGCGACACAATGCCAAACCACTCCG...CACCTGCATGCTCAGACTTCTTACAGCGCCGCCTCCACTTGCGTCTTGTACATG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000021045.13
ENSMUST00000066197.7
CDS-3UTR CAA 90 bp GGGGTCACCCAGGCCACCGTACTTCCTCCACAGGTGCTGAGAAAAGAAGGAGGACCTTCCTCTTCTTCTTaGCCAAGCAGGTCTAATAGC +
Preference number: 5 (lower is better)
Translates to: GVTQATVLPPQVLRKEGGPSSSS*PSRSNS
Trigger: GCTATTAGACCTGCTTGGCAAAGAAGAAGAGGAAGG...TCCTCCTTCTTTTCTCAGCACCTGTGGAGGAAGTACGGTGGCCTGGGTGACCCC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000021045.13
ENSMUST00000066197.7
CDS-3UTR CAA 90 bp GTCACCCAGGCCACCGTACTTCCTCCACAGGTGCTGAGAAAAGAAGGAGGAGGTCCTTCCTCTTCTTCTTaGCCAAGCAGGTCTAATAGC +
Preference number: 5 (lower is better)
Translates to: VTQATVLPPQVLRKEGGGPSSSS*PSRSNS
Trigger: GCTATTAGACCTGCTTGGCAAAGAAGAAGAGGAAGG...ACCTCCTCCTTCTTTTCTCAGCACCTGTGGAGGAAGTACGGTGGCCTGGGTGAC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000021045.13
ENSMUST00000066197.7
CDS TCA 90 bp CAGGCTCTGGGCCACCACTTCATCCACCTTGGTAACATGCTGATATaGGAAATAGTAGGATACTCTCTCCGAGCTCTCCACCAGCAGCAG +
Preference number: 5 (lower is better)
Translates to: QALGHHFIHLGNMLI*EIVGYSLRALHQQQ
Trigger: CTGCTGCTGGTGGAGAGCTCGGAGAGAGTATCCTACTATTTCTCATATCAGCATGTTACCAAGGTGGATGAAGTGGTGGCCCAGAGCCTG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000066197.7
CDS-3UTR CAA 90 bp GGGGTCACCCAGGCCACCGTACTTCCTCCACAGGTGCTGAGAAAAGAAGGAGGAAATGAACAATCCCATTaGACCACCAATGTCACCAAG +
Preference number: 5 (lower is better)
Translates to: GVTQATVLPPQVLRKEGGNEQSH*TTNVTK
Trigger: CTTGGTGACATTGGTGGTCAAATGGGATTGTTCATT...TCCTCCTTCTTTTCTCAGCACCTGTGGAGGAAGTACGGTGGCCTGGGTGACCCC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000021045.13
ENSMUST00000066197.7
CDS-3UTR CAA 90 bp GTCACCCAGGCCACCGTACTTCCTCCACAGGTGCTGAGAAAAGAAGGAGGAGGTAATGAACAATCCCATTaGACCACCAATGTCACCAAG +
Preference number: 5 (lower is better)
Translates to: VTQATVLPPQVLRKEGGGNEQSH*TTNVTK
Trigger: CTTGGTGACATTGGTGGTCAAATGGGATTGTTCATT...ACCTCCTCCTTCTTTTCTCAGCACCTGTGGAGGAAGTACGGTGGCCTGGGTGAC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000021045.13
ENSMUST00000066197.7
CDS-3UTR CAA 90 bp AACACAAGGATCAAACGTTGTAGAGAGTTCTGTGGTTTCCTTCTTGACAGTGCAGTGGTGAGCAGAGGCTaGCCATCCTCGCCTGAGTTA +
Preference number: 5 (lower is better)
Translates to: NTRIKRCREFCGFLLDSAVVSRG*PSSPEL
Trigger: TAACTCAGGCGAGGATGGCAAGCCTCTGCTCACCAC...TGCACTGTCAAGAAGGAAACCACAGAACTCTCTACAACGTTTGATCCTTGTGTT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000021045.13
ENSMUST00000066197.7
CDS-3UTR CAA 90 bp AACACAAGGATCAAACGTTGTAGAGAGTTCTGTGGTTTCCTTCTTGACAGTGCATGGTTTCGGAGTGGTTaGGCATTGTGTCGCAGGTGC +
Preference number: 5 (lower is better)
Translates to: NTRIKRCREFCGFLLDSAWFRSG*ALCRRC
Trigger: GCACCTGCGACACAATGCCAAACCACTCCGAAACCA...TGCACTGTCAAGAAGGAAACCACAGAACTCTCTACAACGTTTGATCCTTGTGTT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000021045.13
ENSMUST00000066197.7
CDS-3UTR CAA 90 bp AACACAAGGATCAAACGTTGTAGAGAGTTCTGTGGTTTCCTTCTTGACAGTGCAGCGTGGTACAAGTCGTaGGTGGTAAGCCTGGAGAAC +
Preference number: 5 (lower is better)
Translates to: NTRIKRCREFCGFLLDSAAWYKS*VVSLEN
Trigger: GTTCTCCAGGCTTACCACCAACGACTTGTACCACGC...TGCACTGTCAAGAAGGAAACCACAGAACTCTCTACAACGTTTGATCCTTGTGTT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000066197.7
CDS-3UTR CAA 90 bp AAACCCAAACCGAACCTTAGAACATCAAAAACCAAAGACCGTAAGACGAAGCAAGAGAACCGGAAGCCATaGAGGTTGCAGAGGGTCACA +
Preference number: 5 (lower is better)
Translates to: KPKPNLRTSKTKDRKTKQENRKP*RLQRVT
Trigger: TGTGACCCTCTGCAACCTCAATGGCTTCCGGTTCTC...TTGCTTCGTCTTACGGTCTTTGGTTTTTGATGTTCTAAGGTTCGGTTTGGGTTT
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000066197.7
CDS-3UTR CAA 90 bp AAACCCAAACCGAACCTTAGAACATCAAAAACCAAAGACCGTAAGACGAAGCAATGGAGAGTAGAGGTGTaGGCGAAGATCTGGATGCTG +
Preference number: 5 (lower is better)
Translates to: KPKPNLRTSKTKDRKTKQWRVEV*AKIWML
Trigger: CAGCATCCAGATCTTCGCCAACACCTCTACTCTCCA...TTGCTTCGTCTTACGGTCTTTGGTTTTTGATGTTCTAAGGTTCGGTTTGGGTTT
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000066197.7
CDS GCA 72 bp GCCGCCGTGCGCCCCGCGCACATGTGCCGCAGCCCGTaGAATTTAGTGCGACTCAGGGACGGCCGCCCCCTG +
Preference number: 6 (lower is better)
Translates to: AAVRPAHMCRSP*NLVRLRDGRPL
Trigger: CAGGGGGCGGCCGTCCCTGAGTCGCACTAAATTGCACGGGCTGCGGCACATGTGCGCGGGGCGCACGGCGGC
74% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000021045.13
CDS GCA 72 bp GGCGCGGCGGCAGGAAGAGGCGGAAGTCGGCCAGCTTaGGGAACCACTGTCTGCGCGGCTCGTCGCCCCGCA +
Preference number: 6 (lower is better)
Translates to: GAAAGRGGSRPA*GTTVCAARRPA
Trigger: TGCGGGGCGACGAGCCGCGCAGACAGTGGTTCCGCAAGCTGGCCGACTTCCGCCTCTTCCTGCCGCCGCGCC
74% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000021045.13
CDS CAA 90 bp CCCTCGAAGTGGCGCGGCGGCAGGAAGAGGCGGAAGTCGGCCAGCTaGCGGAACCACTGTCTGCGCGGCTCGTCGCCCCGCAGCAGCTCG +
Preference number: 6 (lower is better)
Translates to: PSKWRGGRKRRKSAS*RNHCLRGSSPRSSS
Trigger: CGAGCTGCTGCGGGGCGACGAGCCGCGCAGACAGTGGTTCCGCAAGCTGGCCGACTTCCGCCTCTTCCTGCCGCCGCGCCACTTCGAGGG
72% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000021045.13
CDS TCA 72 bp GGCGCGGGAAGCGCAGGGGGTTGTTGTTGCACACGGTaGCAGCGGGGAACGGCAGCTGGCGGCTCCACTCGC +
Preference number: 6 (lower is better)
Translates to: GAGSAGGCCCTR*QRGTAAGGSTR
Trigger: GCGAGTGGAGCCGCCAGCTGCCGTTCCCCGCTGTCACCGTGTGCAACAACAACCCCCTGCGCTTCCCGCGCC
71% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000021045.13
CDS CAA 72 bp CCCTTGGAGAGGCGCGGGAAGCGCAGGGGGTTGTTGTaGCACACGGTGACAGCGGGGAACGGCAGCTGGCGG +
Preference number: 6 (lower is better)
Translates to: PLERRGKRRGLL*HTVTAGNGSWR
Trigger: CCGCCAGCTGCCGTTCCCCGCTGTCACCGTGTGCAACAACAACCCCCTGCGCTTCCCGCGCCTCTCCAAGGG
69% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000021045.13
CDS GCA 72 bp AAAGAGCCTCCCGCCGCCGTGCGCCCCGCGCACATGTaGCGCAGCCCGTGCAATTTAGTGCGACTCAGGGAC +
Preference number: 6 (lower is better)
Translates to: KEPPAAVRPAHM*RSPCNLVRLRD
Trigger: GTCCCTGAGTCGCACTAAATTGCACGGGCTGCGGCACATGTGCGCGGGGCGCACGGCGGCGGGAGGCTCTTT
68% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000021045.13
CDS CCA 72 bp AGACGGTCCATGAAGGCAGCGCTGATGCCCTCGAAGTaGCGCGGCGGCAGGAAGAGGCGGAAGTCGGCCAGC +
Preference number: 6 (lower is better)
Translates to: RRSMKAALMPSK*RGGRKRRKSAS
Trigger: GCTGGCCGACTTCCGCCTCTTCCTGCCGCCGCGCCACTTCGAGGGCATCAGCGCTGCCTTCATGGACCGTCT
68% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000021045.13
CDS GCA 72 bp GGTTCGAGGACCAGGACAACAGCAAGCCAAGGGACGTaGAGAAGGCCAGCACCCACAGCGCCCGCCGCTGGA +
Preference number: 6 (lower is better)
Translates to: GSRTRTTASQGT*RRPAPTAPAAG
Trigger: TCCAGCGGCGGGCGCTGTGGGTGCTGGCCTTCTGCACGTCCCTTGGCTTGCTGTTGTCCTGGTCCTCGAACC
67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000021045.13
CDS CCA 72 bp GTCCTAGCCAGTGGCCCGCGTAGTAGAGGTCCCCCTTaGAGAGGCGCGGGAAGCGCAGGGGGTTGTTGTTGC +
Preference number: 6 (lower is better)
Translates to: VLASGPRSRGPP*RGAGSAGGCCC
Trigger: GCAACAACAACCCCCTGCGCTTCCCGCGCCTCTCCAAGGGGGACCTCTACTACGCGGGCCACTGGCTAGGAC
67% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000021045.13
CDS TCA 72 bp CAGCTGGCGGCTCCACTCGCGGTGCACTCGCGTGTGTaGCGGGAAACTGAGCCAGTAGAGCAGGCGGTTCGA +
Preference number: 6 (lower is better)
Translates to: QLAAPLAVHSRV*RETEPVEQAVR
Trigger: TCGAACCGCCTGCTCTACTGGCTCAGTTTCCCGTCACACACGCGAGTGCACCGCGAGTGGAGCCGCCAGCTG
65% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000021045.13
CDS GCA 72 bp CACCAGCAGCAGGCCCAGAGATCCCACGAAGGCCACTaGCCAAAGCACACGCCGGATGGTCAGCGGCCCATA +
Preference number: 6 (lower is better)
Translates to: HQQQAQRSHEGH*PKHTPDGQRPI
Trigger: TATGGGCCGCTGACCATCCGGCGTGTGCTTTGGGCAGTGGCCTTCGTGGGATCTCTGGGCCTGCTGCTGGTG
65% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000066197.7
CDS CCA 72 bp TTGTTGTTGCACACGGTGACAGCGGGGAACGGCAGCTaGCGGCTCCACTCGCGGTGCACTCGCGTGTGTGAC +
Preference number: 6 (lower is better)
Translates to: LLLHTVTAGNGS*RLHSRCTRVCD
Trigger: GTCACACACGCGAGTGCACCGCGAGTGGAGCCGCCAGCTGCCGTTCCCCGCTGTCACCGTGTGCAACAACAA
65% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000021045.13
CDS TCA 72 bp TCCACTCGCGGTGCACTCGCGTGTGTGACGGGAAACTaGGCCAGTAGAGCAGGCGGTTCGAGGACCAGGACA +
Preference number: 6 (lower is better)
Translates to: STRGALACVTGN*ASRAGGSRTRT
Trigger: TGTCCTGGTCCTCGAACCGCCTGCTCTACTGGCTCAGTTTCCCGTCACACACGCGAGTGCACCGCGAGTGGA
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000021045.13
CDS GCA 72 bp TGTCGGAGGGCCTCCAGCACGGTGGGGTCCGCCAGATaGGGGTCAGGAATCTGCAAGTTGACATCCAACAGG +
Preference number: 6 (lower is better)
Translates to: CRRASSTVGSAR*GSGICKLTSNR
Trigger: CCTGTTGGATGTCAACTTGCAGATTCCTGACCCGCATCTGGCGGACCCCACCGTGCTGGAGGCCCTCCGACA
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000066197.7
CDS CCA 72 bp ATCCCACGAAGGCCACTGCCCAAAGCACACGCCGGATaGTCAGCGGCCCATACACGAAGATGTGGCGGATGC +
Preference number: 6 (lower is better)
Translates to: IPRRPLPKAHAG*SAAHTRRCGGC
Trigger: GCATCCGCCACATCTTCGTGTATGGGCCGCTGACCATCCGGCGTGTGCTTTGGGCAGTGGCCTTCGTGGGAT
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000066197.7
CDS CAA 72 bp GTGGGGTCCGCCAGATGCGGGTCAGGAATCTGCAAGTaGACATCCAACAGGGCCAGCAACTCCCCAGCGTGG +
Preference number: 6 (lower is better)
Translates to: VGSARCGSGICK*TSNRASNSPAW
Trigger: CCACGCTGGGGAGTTGCTGGCCCTGTTGGATGTCAACTTGCAGATTCCTGACCCGCATCTGGCGGACCCCAC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000066197.7
CDS TCA 72 bp TGGGGTCCGCCAGATGCGGGTCAGGAATCTGCAAGTTaGCATCCAACAGGGCCAGCAACTCCCCAGCGTGGT +
Preference number: 6 (lower is better)
Translates to: WGPPDAGQESAS*HPTGPATPQRG
Trigger: ACCACGCTGGGGAGTTGCTGGCCCTGTTGGATGTCAACTTGCAGATTCCTGACCCGCATCTGGCGGACCCCA
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000066197.7
CDS GCA 72 bp GTAGAGGTGTTGGCGAAGATCTGGATGCTGGAAGGTTaGAGGCTGCCCTCGCTGGGGCTCTCCTTGAGGTCC +
Preference number: 6 (lower is better)
Translates to: VEVLAKIWMLEG*RLPSLGLSLRS
Trigger: GGACCTCAAGGAGAGCCCCAGCGAGGGCAGCCTGCAACCTTCCAGCATCCAGATCTTCGCCAACACCTCTAC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000066197.7
CDS GCA 72 bp AGCACGGTGGGGTCCGCCAGATGCGGGTCAGGAATCTaGAAGTTGACATCCAACAGGGCCAGCAACTCCCCA +
Preference number: 6 (lower is better)
Translates to: STVGSARCGSGI*KLTSNRASNSP
Trigger: TGGGGAGTTGCTGGCCCTGTTGGATGTCAACTTGCAGATTCCTGACCCGCATCTGGCGGACCCCACCGTGCT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000066197.7
CDS GCA 72 bp CAGCAGGCAATCTCCTCCAGGGTGCCCAAAGCTGTCTaGAGGGGCACGTTCACAGTGTGGCTGATGGTTTCG +
Preference number: 6 (lower is better)
Translates to: QQAISSRVPKAV*RGTFTVWLMVS
Trigger: CGAAACCATCAGCCACACTGTGAACGTGCCCCTGCAGACAGCTTTGGGCACCCTGGAGGAGATTGCCTGCTG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000021045.13
ENSMUST00000066197.7
CDS CCA 72 bp ACACGCCGGATGGTCAGCGGCCCATACACGAAGATGTaGCGGATGCCATGGAGAGTAGAGGTGTTGGCGAAG +
Preference number: 6 (lower is better)
Translates to: TRRMVSGPYTKM*RMPWRVEVLAK
Trigger: CTTCGCCAACACCTCTACTCTCCATGGCATCCGCCACATCTTCGTGTATGGGCCGCTGACCATCCGGCGTGT
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000066197.7
CDS CAA 72 bp TTGGTGGTAAGCCTGGAGAACCGGAAGCCATTGAGGTaGCAGAGGGTCACAGCTGGGAAGACCAGGCTCTGG +
Preference number: 6 (lower is better)
Translates to: LVVSLENRKPLR*QRVTAGKTRLW
Trigger: CCAGAGCCTGGTCTTCCCAGCTGTGACCCTCTGCAACCTCAATGGCTTCCGGTTCTCCAGGCTTACCACCAA
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000066197.7
CDS TCA 72 bp CCAAAGCTGTCTGCAGGGGCACGTTCACAGTGTGGCTaGTGGTTTCGGAGTGGTTTGGCATTGTGTCGCAGG +
Preference number: 6 (lower is better)
Translates to: PKLSAGARSQCG*WFRSGLALCRR
Trigger: CCTGCGACACAATGCCAAACCACTCCGAAACCATCAGCCACACTGTGAACGTGCCCCTGCAGACAGCTTTGG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000021045.13
ENSMUST00000066197.7
CDS CCA 72 bp GTGCCCAAAGCTGTCTGCAGGGGCACGTTCACAGTGTaGCTGATGGTTTCGGAGTGGTTTGGCATTGTGTCG +
Preference number: 6 (lower is better)
Translates to: VPKAVCRGTFTV*LMVSEWFGIVS
Trigger: CGACACAATGCCAAACCACTCCGAAACCATCAGCCACACTGTGAACGTGCCCCTGCAGACAGCTTTGGGCAC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000021045.13
ENSMUST00000066197.7
CDS CCA 72 bp AGGGGCACGTTCACAGTGTGGCTGATGGTTTCGGAGTaGTTTGGCATTGTGTCGCAGGTGCTCATGTTCTCA +
Preference number: 6 (lower is better)
Translates to: RGTFTVWLMVSE*FGIVSQVLMFS
Trigger: TGAGAACATGAGCACCTGCGACACAATGCCAAACCACTCCGAAACCATCAGCCACACTGTGAACGTGCCCCT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000021045.13
ENSMUST00000066197.7
CDS CCA 72 bp CACGTTCACAGTGTGGCTGATGGTTTCGGAGTGGTTTaGCATTGTGTCGCAGGTGCTCATGTTCTCATCATG +
Preference number: 6 (lower is better)
Translates to: HVHSVADGFGVV*HCVAGAHVLIM
Trigger: CATGATGAGAACATGAGCACCTGCGACACAATGCCAAACCACTCCGAAACCATCAGCCACACTGTGAACGTG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000021045.13
ENSMUST00000066197.7
CDS CCA 72 bp TTTGGCATTGTGTCGCAGGTGCTCATGTTCTCATCATaGCTCCCTTCCTCTTCTTCTTTGCCAAGCAGGTCT +
Preference number: 6 (lower is better)
Translates to: FGIVSQVLMFSS*LPSSSSLPSRS
Trigger: AGACCTGCTTGGCAAAGAAGAAGAGGAAGGGAGCCATGATGAGAACATGAGCACCTGCGACACAATGCCAAA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000021045.13
ENSMUST00000066197.7
CDS TCA 72 bp GGCCACCACTTCATCCACCTTGGTAACATGCTGATATaGGAAATAGTAGGATACTCTCTCCGAGCTCTCCAC +
Preference number: 6 (lower is better)
Translates to: GHHFIHLGNMLI*EIVGYSLRALH
Trigger: GTGGAGAGCTCGGAGAGAGTATCCTACTATTTCTCATATCAGCATGTTACCAAGGTGGATGAAGTGGTGGCC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000066197.7
CDS CAA 72 bp ACACTTCCCATATTTTGTAAACACTGTGGTGAAGTCTaGATGCCCACACTCCTGCCCCTTGAACTTGCAGTA +
Preference number: 6 (lower is better)
Translates to: TLPIFCKHCGEV*MPTLLPLELAV
Trigger: TACTGCAAGTTCAAGGGGCAGGAGTGTGGGCATCAAGACTTCACCACAGTGTTTACAAAATATGGGAAGTGT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000066197.7