Pregenerated sensors for ASF1B (Mus musculus)
Ensembl gene IDs: ENSMUSG00000005470Ensembl transcript IDs: ENSMUST00000005607.9
Found 55 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR GCA 90 bp | AGAGTTGGAAGGAGTGATAACCTCTGGCCAATGCTAGCCAGACACTaGCCAAGCAAGCCTCACAGAAGGTGGTGTTCAGAAAGCATCTCA | + |
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Preference number: 1 (lower is better) Translates to: RVGRSDNLWPMLARH*PSKPHRRWCSESIS Trigger: TGAGATGCTTTCTGAACACCACCTTCTGTGAGGCTTGCTTGGGCAGTGTCTGGCTAGCATTGGCCAGAGGTTATCACTCCTTCCAACTCT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000005607.9 |
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| 3UTR-3UTR GCA 90 bp | TTGGGGCTGACAGATCTGGAGACAGCTGGTGGTCCCCAAATCCTTGAGATGACCGGTCCCCTCCAGGTGTaGAAGGAGACTGCTGTGGTC | + |
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Preference number: 2 (lower is better) Translates to: LGLTDLETAGGPQILEMTGPLQV*KETAVV Trigger: GACCACAGCAGTCTCCTTGCACACCTGGAGGGGACC...GGTCATCTCAAGGATTTGGGGACCACCAGCTGTCTCCAGATCTGTCAGCCCCAA 58% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000005607.9 |
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| 3UTR-3UTR GCA 90 bp | TTGGGGCTGACAGATCTGGAGACAGCTGGTGGTCCCCAAATCCTTGAGATGACCGGTGTGCAAGGAGACTaGTGTGGTCCTACTGAGCTC | + |
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Preference number: 2 (lower is better) Translates to: LGLTDLETAGGPQILEMTGVQGD*CGPTEL Trigger: GAGCTCAGTAGGACCACAGCAGTCTCCTTGCACACC...GGTCATCTCAAGGATTTGGGGACCACCAGCTGTCTCCAGATCTGTCAGCCCCAA 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000005607.9 |
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| 3UTR-3UTR TCA 90 bp | CAGACACTGCCCAAGCAAGCCTCACAGAAGGTGGTGTTCAGAAAGCATCTCATACTGCTGTGGTCCTACTaGGCTCTACCTGGCTCCCCT | + |
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Preference number: 2 (lower is better) Translates to: QTLPKQASQKVVFRKHLILLWSY*ALPGSP Trigger: AGGGGAGCCAGGTAGAGCTCAGTAGGACCACAGCAG...TATGAGATGCTTTCTGAACACCACCTTCTGTGAGGCTTGCTTGGGCAGTGTCTG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000005607.9 |
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| 3UTR-3UTR TCA 90 bp | GGTGGATGGAATGGGAGTTTTTCAGGTCAGCCTGCCAAACACCTCCTTTATCCCGGCTCAGTCAGGAGATaGAAAGGTGGCTGTGACCAA | + |
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Preference number: 2 (lower is better) Translates to: GGWNGSFSGQPAKHLLYPGSVRR*KGGCDQ Trigger: TTGGTCACAGCCACCTTTTCATCTCCTGACTGAGCC...GGGATAAAGGAGGTGTTTGGCAGGCTGACCTGAAAAACTCCCATTCCATCCACC 52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000005607.9 |
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| 3UTR-3UTR TCA 90 bp | GGTGGATGGAATGGGAGTTTTTCAGGTCAGCCTGCCAAACACCTCCTTTATCCCTGGGGCCAGAATGCATaGAGCAGGACCTCCAATATA | + |
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Preference number: 2 (lower is better) Translates to: GGWNGSFSGQPAKHLLYPWGQNA*SRTSNI Trigger: TATATTGGAGGTCCTGCTTCATGCATTCTGGCCCCA...GGGATAAAGGAGGTGTTTGGCAGGCTGACCTGAAAAACTCCCATTCCATCCACC 51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000005607.9 |
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| 3UTR-3UTR GCA 90 bp | CATTGTATTGAGCTGGCCTTCGAACTAGGACTTCTTCCTTGCCTAGTCCCCAAGATGCTAGCCAGACACTaGCCAAGCAAGCCTCACAGA | + |
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Preference number: 2 (lower is better) Translates to: HCIELAFELGLLPCLVPKMLARH*PSKPHR Trigger: TCTGTGAGGCTTGCTTGGGCAGTGTCTGGCTAGCAT...CTTGGGGACTAGGCAAGGAAGAAGTCCTAGTTCGAAGGCCAGCTCAATACAATG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000005607.9 |
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| 3UTR-3UTR TCA 90 bp | ATAGAGGTGGATGGAATGGGAGTTTTTCAGGTCAGCCTGCCAAACACCTCCTTTATGACCAAGCATGTCTaGCTGAGGGCTTGTAGGTCC | + |
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Preference number: 2 (lower is better) Translates to: IEVDGMGVFQVSLPNTSFMTKHV*LRACRS Trigger: GGACCTACAAGCCCTCAGTCAGACATGCTTGGTCAT...AAAGGAGGTGTTTGGCAGGCTGACCTGAAAAACTCCCATTCCATCCACCTCTAT 50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000005607.9 |
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| 3UTR-3UTR TCA 90 bp | CATTGTATTGAGCTGGCCTTCGAACTAGGACTTCTTCCTTGCCTAGTCCCCAAGTGGTCCCCAAATCCTTaGGATGACCAAGCATGTCTG | + |
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Preference number: 2 (lower is better) Translates to: HCIELAFELGLLPCLVPKWSPNP*DDQACL Trigger: CAGACATGCTTGGTCATCTCAAGGATTTGGGGACCA...CTTGGGGACTAGGCAAGGAAGAAGTCCTAGTTCGAAGGCCAGCTCAATACAATG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000005607.9 |
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| 3UTR-3UTR TCA 90 bp | ATAGAGGTGGATGGAATGGGAGTTTTTCAGGTCAGCCTGCCAAACACCTCCTTTTGTGACCAAAGTACCTaGCATCCCTCATTGGCCTGG | + |
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Preference number: 2 (lower is better) Translates to: IEVDGMGVFQVSLPNTSFCDQST*HPSLAW Trigger: CCAGGCCAATGAGGGATGTCAGGTACTTTGGTCACA...AAAGGAGGTGTTTGGCAGGCTGACCTGAAAAACTCCCATTCCATCCACCTCTAT 50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000005607.9 |
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| 3UTR-3UTR TCA 90 bp | CTGCCCAAGCAAGCCTCACAGAAGGTGGTGTTCAGAAAGCATCTCATAGAAACTTCAGTAGGTCATAAGTaGGATGATTCTTCTGGACCT | + |
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Preference number: 2 (lower is better) Translates to: LPKQASQKVVFRKHLIETSVGHK*DDSSGP Trigger: AGGTCCAGAAGAATCATCTCACTTATGACCTACTGA...AGTTTCTATGAGATGCTTTCTGAACACCACCTTCTGTGAGGCTTGCTTGGGCAG 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000005607.9 |
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| 3UTR-3UTR GCA 90 bp | ACACTGCCCAAGCAAGCCTCACAGAAGGTGGTGTTCAGAAAGCATCTCATAGAAAGCAATACAAGTACCTaGTTTTTAGAGGTCAGTAGG | + |
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Preference number: 2 (lower is better) Translates to: TLPKQASQKVVFRKHLIESNTST*FLEVSR Trigger: CCTACTGACCTCTAAAAAGCAGGTACTTGTATTGCT...TTCTATGAGATGCTTTCTGAACACCACCTTCTGTGAGGCTTGCTTGGGCAGTGT 44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000005607.9 |
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| 3UTR TCA 72 bp | GGTGGTCCCCAAATCCTTGAGATGACCAAGCATGTCTaGCTGAGGGCTTGTAGGTCCCCTCCAGGTGTGCAA | + |
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Preference number: 3 (lower is better) Translates to: GGPQILEMTKHV*LRACRSPPGVQ Trigger: TTGCACACCTGGAGGGGACCTACAAGCCCTCAGTCAGACATGCTTGGTCATCTCAAGGATTTGGGGACCACC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000005607.9 |
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| 3UTR-3UTR CAA 90 bp | GGTGGATGGAATGGGAGTTTTTCAGGTCAGCCTGCCAAACACCTCCTTTATCCCCCCCAAGAACTAGAGTaGGAAGGAGTGATAACCTCT | + |
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Preference number: 3 (lower is better) Translates to: GGWNGSFSGQPAKHLLYPPQELE*EGVITS Trigger: AGAGGTTATCACTCCTTCCAACTCTAGTTCTTGGGG...GGGATAAAGGAGGTGTTTGGCAGGCTGACCTGAAAAACTCCCATTCCATCCACC 50% GC, longest homopolymer 7 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000005607.9 |
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| 3UTR GCA 72 bp | GTCAAAGCAAACCCTGATGACTCTATGGGGCCAGAATaGATGAAGCAGGACCTCCAATATACCTACCTAGGG | + |
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Preference number: 3 (lower is better) Translates to: VKANPDDSMGPE*MKQDLQYTYLG Trigger: CCCTAGGTAGGTATATTGGAGGTCCTGCTTCATGCATTCTGGCCCCATAGAGTCATCAGGGTTTGCTTTGAC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000005607.9 |
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| 3UTR CCA 72 bp | CCCAGAGTATTTGGGTATAGCATGAGAATGAACATGTaGTCAAAGCAAACCCTGATGACTCTATGGGGCCAG | + |
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Preference number: 3 (lower is better) Translates to: PRVFGYSMRMNM*SKQTLMTLWGQ Trigger: CTGGCCCCATAGAGTCATCAGGGTTTGCTTTGACCACATGTTCATTCTCATGCTATACCCAAATACTCTGGG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000005607.9 |
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| CDS-3UTR TCA 90 bp | TTGGGGCTGACAGATCTGGAGACAGCTGGTGGTCCCCAAATCCTTGAGATGACCAGTAGCCCACACGGATaGACTCTTGTCCATGGTAGG | + |
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Preference number: 4 (lower is better) Translates to: LGLTDLETAGGPQILEMTSSPHG*TLVHGR Trigger: CCTACCATGGACAAGAGTTCATCCGTGTGGGCTACT...GGTCATCTCAAGGATTTGGGGACCACCAGCTGTCTCCAGATCTGTCAGCCCCAA 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000005607.9 |
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| CDS-3UTR CCA 90 bp | CATTGTATTGAGCTGGCCTTCGAACTAGGACTTCTTCCTTGCCTAGTCCCCAAGAACCGGAAGGGGCTGTaGAAAGGGCTCGGGTTCTCC | + |
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Preference number: 4 (lower is better) Translates to: HCIELAFELGLLPCLVPKNRKGL*KGLGFS Trigger: GGAGAACCCGAGCCCTTTCCACAGCCCCTTCCGGTT...CTTGGGGACTAGGCAAGGAAGAAGTCCTAGTTCGAAGGCCAGCTCAATACAATG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000005607.9 |
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| CDS-3UTR TCA 90 bp | TTGGGGCTGACAGATCTGGAGACAGCTGGTGGTCCCCAAATCCTTGAGATGACCCTGGGTACTCATTGTTaGCATAGTAGCCCACACGGA | + |
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Preference number: 4 (lower is better) Translates to: LGLTDLETAGGPQILEMTLGTHC*HSSPHG Trigger: TCCGTGTGGGCTACTATGTCAACAATGAGTACCCAG...GGTCATCTCAAGGATTTGGGGACCACCAGCTGTCTCCAGATCTGTCAGCCCCAA 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000005607.9 |
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| CDS-3UTR TCA 90 bp | ATAGAGGTGGATGGAATGGGAGTTTTTCAGGTCAGCCTGCCAAACACCTCCTTTCACTGCATTCGAAGCTaGTCTCGAACCGGAAGGGGC | + |
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Preference number: 4 (lower is better) Translates to: IEVDGMGVFQVSLPNTSFHCIRS*SRTGRG Trigger: GCCCCTTCCGGTTCGAGATCAGCTTCGAATGCAGTG...AAAGGAGGTGTTTGGCAGGCTGACCTGAAAAACTCCCATTCCATCCACCTCTAT 52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000005607.9 |
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| CDS-3UTR TCA 90 bp | ACACTGCCCAAGCAAGCCTCACAGAAGGTGGTGTTCAGAAAGCATCTCATAGAACGTCCGTCTCAGGAATaGGGGATGGGTTTGGGGCAT | + |
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Preference number: 4 (lower is better) Translates to: TLPKQASQKVVFRKHLIERPSQE*GMGLGH Trigger: ATGCCCCAAACCCATCCCTCATTCCTGAGACGGACG...TTCTATGAGATGCTTTCTGAACACCACCTTCTGTGAGGCTTGCTTGGGCAGTGT 52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000005607.9 |
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| CDS-3UTR CCA 90 bp | GGAGATGAAAAGGTGGCTGTGACCAAAGTACCTGACATCCCTCATTGGCCTGGGGGCTTCCAGACTGTCTaGATTGTTGTCCCAGTTGAT | + |
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Preference number: 4 (lower is better) Translates to: GDEKVAVTKVPDIPHWPGGFQTV*IVVPVD Trigger: ATCAACTGGGACAACAATCCAGACAGTCTGGAAGCC...CCCAGGCCAATGAGGGATGTCAGGTACTTTGGTCACAGCCACCTTTTCATCTCC 51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000005607.9 |
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| CDS-3UTR TCA 90 bp | ACACTGCCCAAGCAAGCCTCACAGAAGGTGGTGTTCAGAAAGCATCTCATAGAAATGTTCCGCTGTAGCTaGGAGAAGTCTGGCTTTGGG | + |
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Preference number: 4 (lower is better) Translates to: TLPKQASQKVVFRKHLIEMFRCS*EKSGFG Trigger: CCCAAAGCCAGACTTCTCTCAGCTACAGCGGAACAT...TTCTATGAGATGCTTTCTGAACACCACCTTCTGTGAGGCTTGCTTGGGCAGTGT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000005607.9 |
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| CDS-3UTR CCA 90 bp | CTGCCCAAGCAAGCCTCACAGAAGGTGGTGTTCAGAAAGCATCTCATAGAAACTAGAGAAGTCTGGCTTTaGGGGTGGGTTCTCTCGAAG | + |
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Preference number: 4 (lower is better) Translates to: LPKQASQKVVFRKHLIETREVWL*GWVLSK Trigger: CTTCGAGAGAACCCACCCCCAAAGCCAGACTTCTCT...AGTTTCTATGAGATGCTTTCTGAACACCACCTTCTGTGAGGCTTGCTTGGGCAG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000005607.9 |
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| CDS-3UTR CCA 90 bp | CTGCCCAAGCAAGCCTCACAGAAGGTGGTGTTCAGAAAGCATCTCATAGAAACTAATGAGGGATGGGTTTaGGGCATCAGCCTGAAAGAC | + |
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Preference number: 4 (lower is better) Translates to: LPKQASQKVVFRKHLIETNEGWV*GISLKD Trigger: GTCTTTCAGGCTGATGCCCCAAACCCATCCCTCATT...AGTTTCTATGAGATGCTTTCTGAACACCACCTTCTGTGAGGCTTGCTTGGGCAG 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000005607.9 |
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| CDS-3UTR TCA 90 bp | GGTGGATGGAATGGGAGTTTTTCAGGTCAGCCTGCCAAACACCTCCTTTATCCCACTGAATCTAGGATCTaGTCAAACTCCTCACTCTCA | + |
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Preference number: 4 (lower is better) Translates to: GGWNGSFSGQPAKHLLYPTESRI*SNSSLS Trigger: TGAGAGTGAGGAGTTTGATCAGATCCTAGATTCAGT...GGGATAAAGGAGGTGTTTGGCAGGCTGACCTGAAAAACTCCCATTCCATCCACC 48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000005607.9 |
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| CDS-3UTR TCA 90 bp | ACTTCTTCCTTGCCTAGTCCCCAAGAACTAGAGTTGGAAGGAGTGATAACCTCTGATTGTTGTCCCAGTTaGTATGGAATCGGGTCACCC | + |
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Preference number: 4 (lower is better) Translates to: TSSLPSPQELELEGVITSDCCPS*YGIGSP Trigger: GGGTGACCCGATTCCATATCAACTGGGACAACAATC...AGAGGTTATCACTCCTTCCAACTCTAGTTCTTGGGGACTAGGCAAGGAAGAAGT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000005607.9 |
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| CDS-3UTR TCA 90 bp | GAATGTCCTAGACACTCTGAAAGGATAGCCATTGTATTGAGCTGGCCTTCGAACCTCCTCACTCTCAGCTaGGCCCACATAAATGATCTT | + |
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Preference number: 4 (lower is better) Translates to: ECPRHSERIAIVLSWPSNLLTLS*AHINDL Trigger: AAGATCATTTATGTGGGCTCAGCTGAGAGTGAGGAG...GTTCGAAGGCCAGCTCAATACAATGGCTATCCTTTCAGAGTGTCTAGGACATTC 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000005607.9 |
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| CDS-3UTR CCA 90 bp | TTTTCAGGTCAGCCTGCCAAACACCTCCTTTATCCCAGAGTATTTGGGTATAGCTCCACATTGGGGTCCTaGTTTTCTATGGCTTCCAGA | + |
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Preference number: 4 (lower is better) Translates to: FSGQPAKHLLYPRVFGYSSTLGS*FSMASR Trigger: TCTGGAAGCCATAGAAAACCAGGACCCCAATGTGGA...GCTATACCCAAATACTCTGGGATAAAGGAGGTGTTTGGCAGGCTGACCTGAAAA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000005607.9 |
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| CDS-3UTR CCA 90 bp | AAAATGACGCATAGAATGAGCAATACAAGTACCTGCTTTTTAGAGGTCAGTAGGTTGTCCCAGTTGATATaGAATCGGGTCACCCGGGGG | + |
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Preference number: 4 (lower is better) Translates to: KMTHRMSNTSTCFLEVSRLSQLI*NRVTRG Trigger: CCCCCGGGTGACCCGATTCCATATCAACTGGGACAA...CCTACTGACCTCTAAAAAGCAGGTACTTGTATTGCTCATTCTATGCGTCATTTT 46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000005607.9 |
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| 3UTR CAA 72 bp | TACCTGACATCCCTCATTGGCCTGGGGAGCTCACTTTaGCGTTTTGTAGTACTAGTTAGACTGAATGTCCTA | + |
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Preference number: 4 (lower is better) Translates to: YLTSLIGLGSSL*RFVVLVRLNVL Trigger: TAGGACATTCAGTCTAACTAGTACTACAAAACGCAAAAGTGAGCTCCCCAGGCCAATGAGGGATGTCAGGTA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000005607.9 |
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| CDS-3UTR TCA 90 bp | AAAATGACGCATAGAATGAGCAATACAAGTACCTGCTTTTTAGAGGTCAGTAGGTTTGGGGCATCAGCCTaGAAGACGAACATATGCCTT | + |
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Preference number: 4 (lower is better) Translates to: KMTHRMSNTSTCFLEVSRFGASA*KTNICL Trigger: AAGGCATATGTTCGTCTTTCAGGCTGATGCCCCAAA...CCTACTGACCTCTAAAAAGCAGGTACTTGTATTGCTCATTCTATGCGTCATTTT 42% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000005607.9 |
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| CDS-3UTR CCA 90 bp | AAAATGACGCATAGAATGAGCAATACAAGTACCTGCTTTTTAGAGGTCAGTAGGGGTCCTGGTTTTCTATaGCTTCCAGACTGTCTGGAT | + |
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Preference number: 4 (lower is better) Translates to: KMTHRMSNTSTCFLEVSRGPGFL*LPDCLD Trigger: ATCCAGACAGTCTGGAAGCCATAGAAAACCAGGACC...CCTACTGACCTCTAAAAAGCAGGTACTTGTATTGCTCATTCTATGCGTCATTTT 42% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt. Matches the following 1 transcripts: ENSMUST00000005607.9 |
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| CDS TCA 90 bp | TCTTCCACTCCAGGTCGTCAGACAGGGCCTCACTGCATTCGAAGCTaGTCTCGAACCGGAAGGGGCTGTGGAAAGGGCTCGGGTTCTCCA | + |
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Preference number: 5 (lower is better) Translates to: SSTPGRQTGPHCIRS*SRTGRGCGKGSGSP Trigger: TGGAGAACCCGAGCCCTTTCCACAGCCCCTTCCGGTTCGAGATCAGCTTCGAATGCAGTGAGGCCCTGTCTGACGACCTGGAGTGGAAGA 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000005607.9 |
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| CDS TCA 90 bp | AATCGGGTCACCCGGGGGTTAGAGGCCAAGATGTTCCGCTGTAGCTaGGAGAAGTCTGGCTTTGGGGGTGGGTTCTCTCGAAGCTCTGGG | + |
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Preference number: 5 (lower is better) Translates to: NRVTRGLEAKMFRCS*EKSGFGGGFSRSSG Trigger: CCCAGAGCTTCGAGAGAACCCACCCCCAAAGCCAGACTTCTCTCAGCTACAGCGGAACATCTTGGCCTCTAACCCCCGGGTGACCCGATT 59% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000005607.9 |
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| CDS-3UTR CAA 90 bp | TTGGGGCTGACAGATCTGGAGACAGCTGGTGGTCCCCAAATCCTTGAGATGACCGGATTGTTGTCCCAGTaGATATGGAATCGGGTCACC | + |
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Preference number: 5 (lower is better) Translates to: LGLTDLETAGGPQILEMTGLLSQ*IWNRVT Trigger: GGTGACCCGATTCCATATCAACTGGGACAACAATCC...GGTCATCTCAAGGATTTGGGGACCACCAGCTGTCTCCAGATCTGTCAGCCCCAA 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000005607.9 |
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| CDS CCA 90 bp | AGAGAAGTCTGGCTTTGGGGGTGGGTTCTCTCGAAGCTCTGGGTCTaGGTACTCATTGTTGACATAGTAGCCCACACGGATGAACTCTTG | + |
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Preference number: 5 (lower is better) Translates to: REVWLWGWVLSKLWV*VLIVDIVAHTDELL Trigger: CAAGAGTTCATCCGTGTGGGCTACTATGTCAACAATGAGTACCCAGACCCAGAGCTTCGAGAGAACCCACCCCCAAAGCCAGACTTCTCT 52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000005607.9 |
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| CDS CCA 90 bp | ACAGGAGTGCAACTGAGGGAAAGGCTGAAGTCCACATTGGGGTCCTaGTTTTCTATGGCTTCCAGACTGTCTGGATTGTTGTCCCAGTTG | + |
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Preference number: 5 (lower is better) Translates to: TGVQLRERLKSTLGS*FSMASRLSGLLSQL Trigger: CAACTGGGACAACAATCCAGACAGTCTGGAAGCCATAGAAAACCAGGACCCCAATGTGGACTTCAGCCTTTCCCTCAGTTGCACTCCTGT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000005607.9 |
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| CDS-3UTR CAA 90 bp | ACACTGCCCAAGCAAGCCTCACAGAAGGTGGTGTTCAGAAAGCATCTCATAGAAGAGAGAAGTCTGGCTTaGGGGGTGGGTTCTCTCGAA | + |
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Preference number: 5 (lower is better) Translates to: TLPKQASQKVVFRKHLIEERSLA*GVGSLE Trigger: TTCGAGAGAACCCACCCCCAAAGCCAGACTTCTCTC...TTCTATGAGATGCTTTCTGAACACCACCTTCTGTGAGGCTTGCTTGGGCAGTGT 51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000005607.9 |
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| CDS-3UTR CAA 90 bp | TTTTCAGGTCAGCCTGCCAAACACCTCCTTTATCCCAGAGTATTTGGGTATAGCCACACGGATGAACTCTaGTCCATGGTAGGTGCAGGT | + |
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Preference number: 5 (lower is better) Translates to: FSGQPAKHLLYPRVFGYSHTDEL*SMVGAG Trigger: ACCTGCACCTACCATGGACAAGAGTTCATCCGTGTG...GCTATACCCAAATACTCTGGGATAAAGGAGGTGTTTGGCAGGCTGACCTGAAAA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000005607.9 |
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| CDS-3UTR CAA 90 bp | CATTGTATTGAGCTGGCCTTCGAACTAGGACTTCTTCCTTGCCTAGTCCCCAAGTCCAGACTGTCTGGATaGTTGTCCCAGTTGATATGG | + |
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Preference number: 5 (lower is better) Translates to: HCIELAFELGLLPCLVPKSRLSG*LSQLIW Trigger: CCATATCAACTGGGACAACAATCCAGACAGTCTGGA...CTTGGGGACTAGGCAAGGAAGAAGTCCTAGTTCGAAGGCCAGCTCAATACAATG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000005607.9 |
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| CDS-3UTR CAA 90 bp | AAAATGACGCATAGAATGAGCAATACAAGTACCTGCTTTTTAGAGGTCAGTAGGAGACTGTCTGGATTGTaGTCCCAGTTGATATGGAAT | + |
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Preference number: 5 (lower is better) Translates to: KMTHRMSNTSTCFLEVSRRLSGL*SQLIWN Trigger: ATTCCATATCAACTGGGACAACAATCCAGACAGTCT...CCTACTGACCTCTAAAAAGCAGGTACTTGTATTGCTCATTCTATGCGTCATTTT 40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000005607.9 |
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| CDS TCA 72 bp | CCAGGTCGTCAGACAGGGCCTCACTGCATTCGAAGCTaGTCTCGAACCGGAAGGGGCTGTGGAAAGGGCTCG | + |
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Preference number: 6 (lower is better) Translates to: PGRQTGPHCIRS*SRTGRGCGKGS Trigger: CGAGCCCTTTCCACAGCCCCTTCCGGTTCGAGATCAGCTTCGAATGCAGTGAGGCCCTGTCTGACGACCTGG 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000005607.9 |
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| CDS TCA 72 bp | ACCCGGGGGTTAGAGGCCAAGATGTTCCGCTGTAGCTaGGAGAAGTCTGGCTTTGGGGGTGGGTTCTCTCGA | + |
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Preference number: 6 (lower is better) Translates to: TRGLEAKMFRCS*EKSGFGGGFSR Trigger: TCGAGAGAACCCACCCCCAAAGCCAGACTTCTCTCAGCTACAGCGGAACATCTTGGCCTCTAACCCCCGGGT 58% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000005607.9 |
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| CDS CAA 72 bp | CCAAGATGTTCCGCTGTAGCTGAGAGAAGTCTGGCTTaGGGGGTGGGTTCTCTCGAAGCTCTGGGTCTGGGT | + |
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Preference number: 6 (lower is better) Translates to: PRCSAVAERSLA*GVGSLEALGLG Trigger: ACCCAGACCCAGAGCTTCGAGAGAACCCACCCCCAAAGCCAGACTTCTCTCAGCTACAGCGGAACATCTTGG 57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000005607.9 |
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| CDS CCA 72 bp | AGTCACACCCACGGCGTCCGTCTCAGGAATGAGGGATaGGTTTGGGGCATCAGCCTGAAAGACGAACATATG | + |
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Preference number: 6 (lower is better) Translates to: SHTHGVRLRNEG*VWGISLKDEHM Trigger: CATATGTTCGTCTTTCAGGCTGATGCCCCAAACCCATCCCTCATTCCTGAGACGGACGCCGTGGGTGTGACT 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000005607.9 |
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| CDS CCA 72 bp | TGGCTTTGGGGGTGGGTTCTCTCGAAGCTCTGGGTCTaGGTACTCATTGTTGACATAGTAGCCCACACGGAT | + |
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Preference number: 6 (lower is better) Translates to: WLWGWVLSKLWV*VLIVDIVAHTD Trigger: ATCCGTGTGGGCTACTATGTCAACAATGAGTACCCAGACCCAGAGCTTCGAGAGAACCCACCCCCAAAGCCA 54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000005607.9 |
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| CDS CCA 72 bp | GAAGTCTGGCTTTGGGGGTGGGTTCTCTCGAAGCTCTaGGTCTGGGTACTCATTGTTGACATAGTAGCCCAC | + |
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Preference number: 6 (lower is better) Translates to: EVWLWGWVLSKL*VWVLIVDIVAH Trigger: GTGGGCTACTATGTCAACAATGAGTACCCAGACCCAGAGCTTCGAGAGAACCCACCCCCAAAGCCAGACTTC 54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000005607.9 |
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| CDS CAA 72 bp | TCTATGGCTTCCAGACTGTCTGGATTGTTGTCCCAGTaGATATGGAATCGGGTCACCCGGGGGTTAGAGGCC | + |
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Preference number: 6 (lower is better) Translates to: SMASRLSGLLSQ*IWNRVTRGLEA Trigger: GGCCTCTAACCCCCGGGTGACCCGATTCCATATCAACTGGGACAACAATCCAGACAGTCTGGAAGCCATAGA 54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000005607.9 |
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| CDS CAA 72 bp | TCCTGGTTTTCTATGGCTTCCAGACTGTCTGGATTGTaGTCCCAGTTGATATGGAATCGGGTCACCCGGGGG | + |
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Preference number: 6 (lower is better) Translates to: SWFSMASRLSGL*SQLIWNRVTRG Trigger: CCCCCGGGTGACCCGATTCCATATCAACTGGGACAACAATCCAGACAGTCTGGAAGCCATAGAAAACCAGGA 53% GC, longest homopolymer 5 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000005607.9 |
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| CDS CAA 72 bp | GGGTCCTGGTTTTCTATGGCTTCCAGACTGTCTGGATaGTTGTCCCAGTTGATATGGAATCGGGTCACCCGG | + |
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Preference number: 6 (lower is better) Translates to: GSWFSMASRLSG*LSQLIWNRVTR Trigger: CCGGGTGACCCGATTCCATATCAACTGGGACAACAATCCAGACAGTCTGGAAGCCATAGAAAACCAGGACCC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000005607.9 |
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| CDS CAA 90 bp | GTCTGGGTACTCATTGTTGACATAGTAGCCCACACGGATGAACTCTaGTCCATGGTAGGTGCAGGTGATGAGAACCACAGTCACACCCAC | + |
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Preference number: 6 (lower is better) Translates to: VWVLIVDIVAHTDEL*SMVGAGDENHSHTH Trigger: GTGGGTGTGACTGTGGTTCTCATCACCTGCACCTACCATGGACAAGAGTTCATCCGTGTGGGCTACTATGTCAACAATGAGTACCCAGAC 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000005607.9 |
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| CDS CAA 90 bp | TCCTGGTTTTCTATGGCTTCCAGACTGTCTGGATTGTTGTCCCAGTaGATATGGAATCGGGTCACCCGGGGGTTAGAGGCCAAGATGTTC | + |
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Preference number: 6 (lower is better) Translates to: SWFSMASRLSGLLSQ*IWNRVTRGLEAKMF Trigger: GAACATCTTGGCCTCTAACCCCCGGGTGACCCGATTCCATATCAACTGGGACAACAATCCAGACAGTCTGGAAGCCATAGAAAACCAGGA 51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000005607.9 |
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| CDS CCA 72 bp | CAACTGAGGGAAAGGCTGAAGTCCACATTGGGGTCCTaGTTTTCTATGGCTTCCAGACTGTCTGGATTGTTG | + |
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Preference number: 6 (lower is better) Translates to: QLRERLKSTLGS*FSMASRLSGLL Trigger: CAACAATCCAGACAGTCTGGAAGCCATAGAAAACCAGGACCCCAATGTGGACTTCAGCCTTTCCCTCAGTTG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000005607.9 |
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| CDS CCA 72 bp | ATTGGGGTCCTGGTTTTCTATGGCTTCCAGACTGTCTaGATTGTTGTCCCAGTTGATATGGAATCGGGTCAC | + |
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Preference number: 6 (lower is better) Translates to: IGVLVFYGFQTV*IVVPVDMESGH Trigger: GTGACCCGATTCCATATCAACTGGGACAACAATCCAGACAGTCTGGAAGCCATAGAAAACCAGGACCCCAAT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000005607.9 |
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