Pregenerated sensors for ASF1A (Mus musculus)
Ensembl gene IDs: ENSMUSG00000019857Ensembl transcript IDs: ENSMUST00000020004.8, ENSMUST00000218025.2, ENSMUST00000219271.2, ENSMUST00000219282.2
Found 55 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR CCA 90 bp | TTTGCTCTTGCCATGTTGAAATCTCTGGACAATGATTTATGGTCGTaGTTTCCCAGTTTTAGATGTAAGGAAGCATACACCATAGTCAGA | + |
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Preference number: 1 (lower is better) Translates to: FALAMLKSLDNDLWS*FPSFRCKEAYTIVR Trigger: TCTGACTATGGTGTATGCTTCCTTACATCTAAAACTGGGAAACCACGACCATAAATCATTGTCCAGAGATTTCAACATGGCAAGAGCAAA 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000020004.8 |
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| 3UTR TCA 90 bp | AACCTGCATCCCATGGCTCTCCTGTGCATCATCACCATAATCAAATaGAAATACTGTACTGTAAATGTAATGGATCAGAACTTTGAGGAA | + |
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Preference number: 1 (lower is better) Translates to: NLHPMALLCIITIIK*KYCTVNVMDQNFEE Trigger: TTCCTCAAAGTTCTGATCCATTACATTTACAGTACAGTATTTTCATTTGATTATGGTGATGATGCACAGGAGAGCCATGGGATGCAGGTT 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000020004.8 |
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| 3UTR CCA 90 bp | CTTGTATTTGCTCTTGCCATGTTGAAATCTCTGGACAATGATTTATaGTCGTGGTTTCCCAGTTTTAGATGTAAGGAAGCATACACCATA | + |
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Preference number: 1 (lower is better) Translates to: LVFALAMLKSLDNDL*SWFPSFRCKEAYTI Trigger: TATGGTGTATGCTTCCTTACATCTAAAACTGGGAAACCACGACCATAAATCATTGTCCAGAGATTTCAACATGGCAAGAGCAAATACAAG 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000020004.8 |
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| 3UTR-3UTR CCA 90 bp | TATAAAAGCTTAGATGTGAAGGCACCGCATAACCTGCATCCCATGGCTCTCCTGCTAGAAAAACCCTGGTaGCATATAATTGACTTCAAA | + |
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Preference number: 2 (lower is better) Translates to: YKSLDVKAPHNLHPMALLLEKPW*HIIDFK Trigger: TTTGAAGTCAATTATATGCCACCAGGGTTTTTCTAG...CAGGAGAGCCATGGGATGCAGGTTATGCGGTGCCTTCACATCTAAGCTTTTATA 42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000020004.8 |
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| 3UTR CAA 90 bp | AATGTAATCTTACACTTTAGAGAACTTGTATTTGCTCTTGCCATGTaGAAATCTCTGGACAATGATTTATGGTCGTGGTTTCCCAGTTTT | + |
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Preference number: 2 (lower is better) Translates to: NVILHFRELVFALAM*KSLDNDLWSWFPSF Trigger: AAAACTGGGAAACCACGACCATAAATCATTGTCCAGAGATTTCAACATGGCAAGAGCAAATACAAGTTCTCTAAAGTGTAAGATTACATT 36% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000020004.8 |
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| 3UTR CCA 72 bp | GCCATGTTGAAATCTCTGGACAATGATTTATGGTCGTaGTTTCCCAGTTTTAGATGTAAGGAAGCATACACC | + |
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Preference number: 3 (lower is better) Translates to: AMLKSLDNDLWS*FPSFRCKEAYT Trigger: GGTGTATGCTTCCTTACATCTAAAACTGGGAAACCACGACCATAAATCATTGTCCAGAGATTTCAACATGGC 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000020004.8 |
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| 3UTR CCA 72 bp | GCTCTTGCCATGTTGAAATCTCTGGACAATGATTTATaGTCGTGGTTTCCCAGTTTTAGATGTAAGGAAGCA | + |
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Preference number: 3 (lower is better) Translates to: ALAMLKSLDNDL*SWFPSFRCKEA Trigger: TGCTTCCTTACATCTAAAACTGGGAAACCACGACCATAAATCATTGTCCAGAGATTTCAACATGGCAAGAGC 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000020004.8 |
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| 3UTR TCA 72 bp | TACACTTTAGAGAACTTGTATTTGCTCTTGCCATGTTaGAATCTCTGGACAATGATTTATGGTCGTGGTTTC | + |
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Preference number: 3 (lower is better) Translates to: YTLENLYLLLPC*NLWTMIYGRGF Trigger: GAAACCACGACCATAAATCATTGTCCAGAGATTTCAACATGGCAAGAGCAAATACAAGTTCTCTAAAGTGTA 38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000020004.8 |
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| 3UTR-3UTR CAA 90 bp | GTAATCTTACACTTTAGAGAACTTGTATTTGCTCTTGCCATGTTGAAATCTCTGTCTTCACATTTCACGTaGACTATGTACTTACGGAAC | + |
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Preference number: 3 (lower is better) Translates to: VILHFRELVFALAMLKSLSSHFT*TMYLRN Trigger: GTTCCGTAAGTACATAGTCAACGTGAAATGTGAAGA...CAGAGATTTCAACATGGCAAGAGCAAATACAAGTTCTCTAAAGTGTAAGATTAC 37% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000020004.8 |
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| CDS-3UTR TCA 90 bp | TATAAAAGCTTAGATGTGAAGGCACCGCATAACCTGCATCCCATGGCTCTCCTGCATCTGCATCTGGGATaGGTCCTGCATTCGGTGCAT | + |
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Preference number: 4 (lower is better) Translates to: YKSLDVKAPHNLHPMALLHLHLG*VLHSVH Trigger: ATGCACCGAATGCAGGACTCATCCCAGATGCAGATG...CAGGAGAGCCATGGGATGCAGGTTATGCGGTGCCTTCACATCTAAGCTTTTATA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000020004.8 |
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| CDS-3UTR GCA 90 bp | TATAAAAGCTTAGATGTGAAGGCACCGCATAACCTGCATCCCATGGCTCTCCTGATCTGGGATGAGTCCTaGATTCGGTGCATCAGCCTG | + |
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Preference number: 4 (lower is better) Translates to: YKSLDVKAPHNLHPMALLIWDES*IRCISL Trigger: CAGGCTGATGCACCGAATGCAGGACTCATCCCAGAT...CAGGAGAGCCATGGGATGCAGGTTATGCGGTGCCTTCACATCTAAGCTTTTATA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000020004.8 |
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| CDS-3UTR GCA 90 bp | TTTAATAGCTTAATCTGTACTAATGGGATGGCACGTGGTCACATGCAGTCCATGAACTGTTACCCCCACTaGATCTGCATCTGGGATGAG | + |
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Preference number: 4 (lower is better) Translates to: FNSLICTNGMARGHMQSMNCYPH*ICIWDE Trigger: CTCATCCCAGATGCAGATGCAGTGGGGGTAACAGTT...CATGGACTGCATGTGACCACGTGCCATCCCATTAGTACAGATTAAGCTATTAAA 46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000218025.2 |
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| CDS-3UTR GCA 90 bp | GGTAAGATGCACTGGGGTGGCCTAGAAAAACCCTGGTGGCATATAATTGACTTCTGGGTTACTGCTCTCTaGATCTTCCAGTTTTTCTGT | + |
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Preference number: 4 (lower is better) Translates to: GKMHWGGLEKPWWHIIDFWVTAL*IFQFFC Trigger: ACAGAAAAACTGGAAGATGCAGAGAGCAGTAACCCA...GAAGTCAATTATATGCCACCAGGGTTTTTCTAGGCCACCCCAGTGCATCTTACC 46% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt. Matches the following 1 transcripts: ENSMUST00000020004.8 |
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| CDS-3UTR GCA 90 bp | GGTAAGATGCACTGGGGTGGCCTAGAAAAACCCTGGTGGCATATAATTGACTTCGTAGATTTGGGTTACTaGTCTCTGCATCTTCCAGTT | + |
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Preference number: 4 (lower is better) Translates to: GKMHWGGLEKPWWHIIDFVDLGY*SLHLPV Trigger: AACTGGAAGATGCAGAGAGCAGTAACCCAAATCTAC...GAAGTCAATTATATGCCACCAGGGTTTTTCTAGGCCACCCCAGTGCATCTTACC 46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000020004.8 |
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| CDS-3UTR GCA 90 bp | TCTTCACATTTCACGTTGACTATGTACTTACGGAACTTCAGGGAAATAGTTCTGAACTGTTACCCCCACTaGATCTGCATCTGGGATGAG | + |
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Preference number: 4 (lower is better) Translates to: SSHFTLTMYLRNFREIVLNCYPH*ICIWDE Trigger: CTCATCCCAGATGCAGATGCAGTGGGGGTAACAGTT...CAGAACTATTTCCCTGAAGTTCCGTAAGTACATAGTCAACGTGAAATGTGAAGA 43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENSMUST00000020004.8 ENSMUST00000218025.2 ENSMUST00000219282.2 |
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| CDS-3UTR CCA 90 bp | TTCACATTTCACGTTGACTATGTACTTACGGAACTTCAGGGAAATAGTTCTGTTCACTGCATCTGCATCTaGGATGAGTCCTGCATTCGG | + |
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Preference number: 4 (lower is better) Translates to: FTFHVDYVLTELQGNSSVHCICI*DESCIR Trigger: CCGAATGCAGGACTCATCCCAGATGCAGATGCAGTG...AACAGAACTATTTCCCTGAAGTTCCGTAAGTACATAGTCAACGTGAAATGTGAA 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000020004.8 ENSMUST00000218025.2 ENSMUST00000219282.2 |
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| CDS-3UTR TCA 90 bp | AATTCTTCACATTTCACGTTGACTATGTACTTACGGAACTTCAGGGAAATAGTTCATCTGCATCTGGGATaGGTCCTGCATTCGGTGCAT | + |
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Preference number: 4 (lower is better) Translates to: NSSHFTLTMYLRNFREIVHLHLG*VLHSVH Trigger: ATGCACCGAATGCAGGACTCATCCCAGATGCAGATG...AACTATTTCCCTGAAGTTCCGTAAGTACATAGTCAACGTGAAATGTGAAGAATT 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000020004.8 ENSMUST00000218025.2 ENSMUST00000219282.2 |
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| CDS-3UTR TCA 90 bp | AACAAATTCTTCACATTTCACGTTGACTATGTACTTACGGAACTTCAGGGAAATCATCTGCATCTGGGATaGGTCCTGCATTCGGTGCAT | + |
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Preference number: 4 (lower is better) Translates to: NKFFTFHVDYVLTELQGNHLHLG*VLHSVH Trigger: ATGCACCGAATGCAGGACTCATCCCAGATGCAGATG...ATTTCCCTGAAGTTCCGTAAGTACATAGTCAACGTGAAATGTGAAGAATTTGTT 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000020004.8 ENSMUST00000218025.2 ENSMUST00000219282.2 |
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| CDS-3UTR GCA 90 bp | ACATTTCACGTTGACTATGTACTTACGGAACTTCAGGGAAATAGTTCTGTTTTTATCTGGGATGAGTCCTaGATTCGGTGCATCAGCCTG | + |
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Preference number: 4 (lower is better) Translates to: TFHVDYVLTELQGNSSVFIWDES*IRCISL Trigger: CAGGCTGATGCACCGAATGCAGGACTCATCCCAGAT...AAAAACAGAACTATTTCCCTGAAGTTCCGTAAGTACATAGTCAACGTGAAATGT 42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENSMUST00000020004.8 ENSMUST00000218025.2 ENSMUST00000219282.2 |
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| CDS-3UTR GCA 90 bp | AATTCTTCACATTTCACGTTGACTATGTACTTACGGAACTTCAGGGAAATAGTTATCTGGGATGAGTCCTaGATTCGGTGCATCAGCCTG | + |
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Preference number: 4 (lower is better) Translates to: NSSHFTLTMYLRNFREIVIWDES*IRCISL Trigger: CAGGCTGATGCACCGAATGCAGGACTCATCCCAGAT...AACTATTTCCCTGAAGTTCCGTAAGTACATAGTCAACGTGAAATGTGAAGAATT 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000020004.8 ENSMUST00000218025.2 ENSMUST00000219282.2 |
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| CDS-3UTR CCA 90 bp | TTAAACAAATTCTTCACATTTCACGTTGACTATGTACTTACGGAACTTCAGGGACACTGCATCTGCATCTaGGATGAGTCCTGCATTCGG | + |
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Preference number: 4 (lower is better) Translates to: LNKFFTFHVDYVLTELQGHCICI*DESCIR Trigger: CCGAATGCAGGACTCATCCCAGATGCAGATGCAGTG...TCCCTGAAGTTCCGTAAGTACATAGTCAACGTGAAATGTGAAGAATTTGTTTAA 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000020004.8 ENSMUST00000218025.2 ENSMUST00000219282.2 |
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| CDS-3UTR CCA 90 bp | TTCACATTTCACGTTGACTATGTACTTACGGAACTTCAGGGAAATAGTTCTGTTGTGAGTTTTCTGACGTaGACCATCCCTTTGACGCTG | + |
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Preference number: 4 (lower is better) Translates to: FTFHVDYVLTELQGNSSVVSFLT*TIPLTL Trigger: CAGCGTCAAAGGGATGGTCCACGTCAGAAAACTCAC...AACAGAACTATTTCCCTGAAGTTCCGTAAGTACATAGTCAACGTGAAATGTGAA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000020004.8 ENSMUST00000218025.2 ENSMUST00000219282.2 |
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| CDS-3UTR GCA 90 bp | CATTTCACGTTGACTATGTACTTACGGAACTTCAGGGAAATAGTTCTGTTTTTAAACTGTTACCCCCACTaGATCTGCATCTGGGATGAG | + |
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Preference number: 4 (lower is better) Translates to: HFTLTMYLRNFREIVLFLNCYPH*ICIWDE Trigger: CTCATCCCAGATGCAGATGCAGTGGGGGTAACAGTT...TAAAAACAGAACTATTTCCCTGAAGTTCCGTAAGTACATAGTCAACGTGAAATG 41% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 3 transcripts: ENSMUST00000020004.8 ENSMUST00000218025.2 ENSMUST00000219282.2 |
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| CDS-3UTR GCA 90 bp | TCTTCACATTTCACGTTGACTATGTACTTACGGAACTTCAGGGAAATAGTTCTGTGGGTTACTGCTCTCTaGATCTTCCAGTTTTTCTGT | + |
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Preference number: 4 (lower is better) Translates to: SSHFTLTMYLRNFREIVLWVTAL*IFQFFC Trigger: ACAGAAAAACTGGAAGATGCAGAGAGCAGTAACCCA...CAGAACTATTTCCCTGAAGTTCCGTAAGTACATAGTCAACGTGAAATGTGAAGA 40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000020004.8 ENSMUST00000219282.2 |
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| CDS-3UTR CCA 90 bp | AATCTCTGGACAATGATTTATGGTCGTGGTTTCCCAGTTTTAGATGTAAGGAAGTCTTCCCAGTTAATGTaGAATCTTGTGACTCTGGGA | + |
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Preference number: 4 (lower is better) Translates to: NLWTMIYGRGFPVLDVRKSSQLM*NLVTLG Trigger: TCCCAGAGTCACAAGATTCCACATTAACTGGGAAGA...CTTCCTTACATCTAAAACTGGGAAACCACGACCATAAATCATTGTCCAGAGATT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000020004.8 |
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| CDS-3UTR CCA 90 bp | TCTTCACATTTCACGTTGACTATGTACTTACGGAACTTCAGGGAAATAGTTCTGTCTTCCCAGTTAATGTaGAATCTTGTGACTCTGGGA | + |
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Preference number: 4 (lower is better) Translates to: SSHFTLTMYLRNFREIVLSSQLM*NLVTLG Trigger: TCCCAGAGTCACAAGATTCCACATTAACTGGGAAGA...CAGAACTATTTCCCTGAAGTTCCGTAAGTACATAGTCAACGTGAAATGTGAAGA 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000020004.8 ENSMUST00000219282.2 |
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| CDS-3UTR TCA 90 bp | CATTTCACGTTGACTATGTACTTACGGAACTTCAGGGAAATAGTTCTGTTTTTATTCGGTGCATCAGCCTaGAACACAAACATATGCCTT | + |
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Preference number: 4 (lower is better) Translates to: HFTLTMYLRNFREIVLFLFGASA*NTNICL Trigger: AAGGCATATGTTTGTGTTTCAGGCTGATGCACCGAA...TAAAAACAGAACTATTTCCCTGAAGTTCCGTAAGTACATAGTCAACGTGAAATG 39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000020004.8 ENSMUST00000218025.2 |
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| CDS-3UTR TCA 90 bp | TTAAACAAATTCTTCACATTTCACGTTGACTATGTACTTACGGAACTTCAGGGATTCGGTGCATCAGCCTaGAACACAAACATATGCCTT | + |
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Preference number: 4 (lower is better) Translates to: LNKFFTFHVDYVLTELQGFGASA*NTNICL Trigger: AAGGCATATGTTTGTGTTTCAGGCTGATGCACCGAA...TCCCTGAAGTTCCGTAAGTACATAGTCAACGTGAAATGTGAAGAATTTGTTTAA 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000020004.8 ENSMUST00000218025.2 |
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| CDS-3UTR TCA 90 bp | GTAGCTAGCCAGAATAAAGCTAACCAGGCCTTTCTAAATTACCCTTGTAAGTTCGCCAAAATATTCCTTTaGAGCTTAGAAAAGTCTGGT | + |
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Preference number: 4 (lower is better) Translates to: VASQNKANQAFLNYPCKFAKIFL*SLEKSG Trigger: ACCAGACTTTTCTAAGCTTCAAAGGAATATTTTGGC...GAACTTACAAGGGTAATTTAGAAAGGCCTGGTTAGCTTTATTCTGGCTAGCTAC 39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000020004.8 |
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| CDS-3UTR GCA 90 bp | ACATTTCACGTTGACTATGTACTTACGGAACTTCAGGGAAATAGTTCTGTTTTTGTAGATTTGGGTTACTaGTCTCTGCATCTTCCAGTT | + |
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Preference number: 4 (lower is better) Translates to: TFHVDYVLTELQGNSSVFVDLGY*SLHLPV Trigger: AACTGGAAGATGCAGAGAGCAGTAACCCAAATCTAC...AAAAACAGAACTATTTCCCTGAAGTTCCGTAAGTACATAGTCAACGTGAAATGT 38% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000020004.8 ENSMUST00000219282.2 |
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| CDS-3UTR TCA 90 bp | AATTCTTCACATTTCACGTTGACTATGTACTTACGGAACTTCAGGGAAATAGTTGCCAAAATATTCCTTTaGAGCTTAGAAAAGTCTGGT | + |
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Preference number: 4 (lower is better) Translates to: NSSHFTLTMYLRNFREIVAKIFL*SLEKSG Trigger: ACCAGACTTTTCTAAGCTTCAAAGGAATATTTTGGC...AACTATTTCCCTGAAGTTCCGTAAGTACATAGTCAACGTGAAATGTGAAGAATT 36% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000020004.8 ENSMUST00000219282.2 |
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| CDS-3UTR GCA 90 bp | AATTCTTCACATTTCACGTTGACTATGTACTTACGGAACTTCAGGGAAATAGTTGTATTCTTCACTTTCTaGAGAGCCCACATAGATTAT | + |
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Preference number: 4 (lower is better) Translates to: NSSHFTLTMYLRNFREIVVFFTF*RAHIDY Trigger: ATAATCTATGTGGGCTCTGCAGAAAGTGAAGAATAC...AACTATTTCCCTGAAGTTCCGTAAGTACATAGTCAACGTGAAATGTGAAGAATT 36% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000020004.8 ENSMUST00000218025.2 |
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| CDS-3UTR GCA 90 bp | TTAAACAAATTCTTCACATTTCACGTTGACTATGTACTTACGGAACTTCAGGGAGTATTCTTCACTTTCTaGAGAGCCCACATAGATTAT | + |
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Preference number: 4 (lower is better) Translates to: LNKFFTFHVDYVLTELQGVFFTF*RAHIDY Trigger: ATAATCTATGTGGGCTCTGCAGAAAGTGAAGAATAC...TCCCTGAAGTTCCGTAAGTACATAGTCAACGTGAAATGTGAAGAATTTGTTTAA 36% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000020004.8 ENSMUST00000218025.2 |
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| CDS-3UTR GCA 90 bp | GTAATCTTACACTTTAGAGAACTTGTATTTGCTCTTGCCATGTTGAAATCTCTGGACTCTGGGATTAGATaGCAAAATATTCCTTTGAAG | + |
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Preference number: 4 (lower is better) Translates to: VILHFRELVFALAMLKSLDSGIR*QNIPLK Trigger: CTTCAAAGGAATATTTTGGCATCTAATCCCAGAGTC...CAGAGATTTCAACATGGCAAGAGCAAATACAAGTTCTCTAAAGTGTAAGATTAC 36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000020004.8 |
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| CDS-3UTR GCA 90 bp | TTAAACAAATTCTTCACATTTCACGTTGACTATGTACTTACGGAACTTCAGGGAGACTCTGGGATTAGATaGCAAAATATTCCTTTGAAG | + |
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Preference number: 4 (lower is better) Translates to: LNKFFTFHVDYVLTELQGDSGIR*QNIPLK Trigger: CTTCAAAGGAATATTTTGGCATCTAATCCCAGAGTC...TCCCTGAAGTTCCGTAAGTACATAGTCAACGTGAAATGTGAAGAATTTGTTTAA 36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000020004.8 ENSMUST00000219282.2 |
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| 3UTR CAA 72 bp | TTACACTTTAGAGAACTTGTATTTGCTCTTGCCATGTaGAAATCTCTGGACAATGATTTATGGTCGTGGTTT | + |
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Preference number: 4 (lower is better) Translates to: LHFRELVFALAM*KSLDNDLWSWF Trigger: AAACCACGACCATAAATCATTGTCCAGAGATTTCAACATGGCAAGAGCAAATACAAGTTCTCTAAAGTGTAA 36% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000020004.8 |
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| CDS CCA 90 bp | GGTGCAAGTAATCAGAACAACTGTTACCCCCACTGCATCTGCATCTaGGATGAGTCCTGCATTCGGTGCATCAGCCTGAAACACAAACAT | + |
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Preference number: 5 (lower is better) Translates to: GASNQNNCYPHCICI*DESCIRCISLKHKH Trigger: ATGTTTGTGTTTCAGGCTGATGCACCGAATGCAGGACTCATCCCAGATGCAGATGCAGTGGGGGTAACAGTTGTTCTGATTACTTGCACC 49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 4 transcripts: ENSMUST00000020004.8 ENSMUST00000218025.2 ENSMUST00000219271.2 ENSMUST00000219282.2 |
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| CDS-3UTR CAA 90 bp | GACAATGATTTATGGTCGTGGTTTCCCAGTTTTAGATGTAAGGAAGCATACACCACGTGGACCATCCCTTaGACGCTGACGGTAATGCAT | + |
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Preference number: 5 (lower is better) Translates to: DNDLWSWFPSFRCKEAYTTWTIP*TLTVMH Trigger: ATGCATTACCGTCAGCGTCAAAGGGATGGTCCACGT...GGTGTATGCTTCCTTACATCTAAAACTGGGAAACCACGACCATAAATCATTGTC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000020004.8 |
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| CDS-3UTR CAA 90 bp | TATAAAAGCTTAGATGTGAAGGCACCGCATAACCTGCATCCCATGGCTCTCCTGAACTCTAATAAATTCTaGACCTCGGTAGGTGCAAGT | + |
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Preference number: 5 (lower is better) Translates to: YKSLDVKAPHNLHPMALLNSNKF*TSVGAS Trigger: ACTTGCACCTACCGAGGTCAAGAATTTATTAGAGTT...CAGGAGAGCCATGGGATGCAGGTTATGCGGTGCCTTCACATCTAAGCTTTTATA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000020004.8 |
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| CDS-3UTR CAA 90 bp | AATCTCTGGACAATGATTTATGGTCGTGGTTTCCCAGTTTTAGATGTAAGGAAGGAAGGGACTGTAGATTaGGGTTACTGCTCTCTGCAT | + |
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Preference number: 5 (lower is better) Translates to: NLWTMIYGRGFPVLDVRKEGTVD*GYCSLH Trigger: ATGCAGAGAGCAGTAACCCAAATCTACAGTCCCTTC...CTTCCTTACATCTAAAACTGGGAAACCACGACCATAAATCATTGTCCAGAGATT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000020004.8 |
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| CDS-3UTR CAA 90 bp | AATTCTTCACATTTCACGTTGACTATGTACTTACGGAACTTCAGGGAAATAGTTACGTGGACCATCCCTTaGACGCTGACGGTAATGCAT | + |
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Preference number: 5 (lower is better) Translates to: NSSHFTLTMYLRNFREIVTWTIP*TLTVMH Trigger: ATGCATTACCGTCAGCGTCAAAGGGATGGTCCACGT...AACTATTTCCCTGAAGTTCCGTAAGTACATAGTCAACGTGAAATGTGAAGAATT 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000020004.8 ENSMUST00000218025.2 ENSMUST00000219282.2 |
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| CDS-3UTR CAA 90 bp | AACAAATTCTTCACATTTCACGTTGACTATGTACTTACGGAACTTCAGGGAAATACGTGGACCATCCCTTaGACGCTGACGGTAATGCAT | + |
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Preference number: 5 (lower is better) Translates to: NKFFTFHVDYVLTELQGNTWTIP*TLTVMH Trigger: ATGCATTACCGTCAGCGTCAAAGGGATGGTCCACGT...ATTTCCCTGAAGTTCCGTAAGTACATAGTCAACGTGAAATGTGAAGAATTTGTT 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000020004.8 ENSMUST00000218025.2 ENSMUST00000219282.2 |
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| CDS-3UTR CAA 90 bp | CATTTCACGTTGACTATGTACTTACGGAACTTCAGGGAAATAGTTCTGTTTTTAGAAGGGACTGTAGATTaGGGTTACTGCTCTCTGCAT | + |
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Preference number: 5 (lower is better) Translates to: HFTLTMYLRNFREIVLFLEGTVD*GYCSLH Trigger: ATGCAGAGAGCAGTAACCCAAATCTACAGTCCCTTC...TAAAAACAGAACTATTTCCCTGAAGTTCCGTAAGTACATAGTCAACGTGAAATG 40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000020004.8 ENSMUST00000219282.2 |
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| CDS-3UTR CAA 90 bp | TCTTCACATTTCACGTTGACTATGTACTTACGGAACTTCAGGGAAATAGTTCTGTGCCAAAATATTCCTTaGAAGCTTAGAAAAGTCTGG | + |
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Preference number: 5 (lower is better) Translates to: SSHFTLTMYLRNFREIVLCQNIP*KLRKVW Trigger: CCAGACTTTTCTAAGCTTCAAAGGAATATTTTGGCA...CAGAACTATTTCCCTGAAGTTCCGTAAGTACATAGTCAACGTGAAATGTGAAGA 38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000020004.8 ENSMUST00000219282.2 |
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| CDS-3UTR CAA 90 bp | TCTTCACATTTCACGTTGACTATGTACTTACGGAACTTCAGGGAAATAGTTCTGGATTCTAACATAACATaGAGTGAGTTTTCTGACGTG | + |
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Preference number: 5 (lower is better) Translates to: SSHFTLTMYLRNFREIVLDSNIT*SEFSDV Trigger: CACGTCAGAAAACTCACTCAATGTTATGTTAGAATC...CAGAACTATTTCCCTGAAGTTCCGTAAGTACATAGTCAACGTGAAATGTGAAGA 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000020004.8 ENSMUST00000219282.2 |
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| CDS-3UTR CAA 90 bp | AATTCTTCACATTTCACGTTGACTATGTACTTACGGAACTTCAGGGAAATAGTTAACTCTAATAAATTCTaGACCTCGGTAGGTGCAAGT | + |
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Preference number: 5 (lower is better) Translates to: NSSHFTLTMYLRNFREIVNSNKF*TSVGAS Trigger: ACTTGCACCTACCGAGGTCAAGAATTTATTAGAGTT...AACTATTTCCCTGAAGTTCCGTAAGTACATAGTCAACGTGAAATGTGAAGAATT 37% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000020004.8 ENSMUST00000218025.2 ENSMUST00000219282.2 |
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| CDS-3UTR CAA 90 bp | AACAAATTCTTCACATTTCACGTTGACTATGTACTTACGGAACTTCAGGGAAATAACTCTAATAAATTCTaGACCTCGGTAGGTGCAAGT | + |
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Preference number: 5 (lower is better) Translates to: NKFFTFHVDYVLTELQGNNSNKF*TSVGAS Trigger: ACTTGCACCTACCGAGGTCAAGAATTTATTAGAGTT...ATTTCCCTGAAGTTCCGTAAGTACATAGTCAACGTGAAATGTGAAGAATTTGTT 37% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000020004.8 ENSMUST00000218025.2 ENSMUST00000219282.2 |
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| CDS-3UTR CAA 90 bp | TTCACATTTCACGTTGACTATGTACTTACGGAACTTCAGGGAAATAGTTCTGTTGATTCTAACATAACATaGAGTGAGTTTTCTGACGTG | + |
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Preference number: 5 (lower is better) Translates to: FTFHVDYVLTELQGNSSVDSNIT*SEFSDV Trigger: CACGTCAGAAAACTCACTCAATGTTATGTTAGAATC...AACAGAACTATTTCCCTGAAGTTCCGTAAGTACATAGTCAACGTGAAATGTGAA 37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000020004.8 ENSMUST00000219282.2 |
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| CDS-3UTR CAA 90 bp | ACATTTCACGTTGACTATGTACTTACGGAACTTCAGGGAAATAGTTCTGTTTTTTGCCAAAATATTCCTTaGAAGCTTAGAAAAGTCTGG | + |
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Preference number: 5 (lower is better) Translates to: TFHVDYVLTELQGNSSVFCQNIP*KLRKVW Trigger: CCAGACTTTTCTAAGCTTCAAAGGAATATTTTGGCA...AAAAACAGAACTATTTCCCTGAAGTTCCGTAAGTACATAGTCAACGTGAAATGT 36% GC, longest homopolymer 6 nt, total homopolymer stretches 14 nt. Matches the following 2 transcripts: ENSMUST00000020004.8 ENSMUST00000219282.2 |
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| CDS GCA 72 bp | GCAAGTAATCAGAACAACTGTTACCCCCACTGCATCTaGATCTGGGATGAGTCCTGCATTCGGTGCATCAGC | + |
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Preference number: 6 (lower is better) Translates to: ASNQNNCYPHCI*IWDESCIRCIS Trigger: GCTGATGCACCGAATGCAGGACTCATCCCAGATGCAGATGCAGTGGGGGTAACAGTTGTTCTGATTACTTGC 51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 4 transcripts: ENSMUST00000020004.8 ENSMUST00000218025.2 ENSMUST00000219271.2 ENSMUST00000219282.2 |
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| CDS GCA 72 bp | TGTTACCCCCACTGCATCTGCATCTGGGATGAGTCCTaGATTCGGTGCATCAGCCTGAAACACAAACATATG | + |
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Preference number: 6 (lower is better) Translates to: CYPHCICIWDES*IRCISLKHKHM Trigger: CATATGTTTGTGTTTCAGGCTGATGCACCGAATGCAGGACTCATCCCAGATGCAGATGCAGTGGGGGTAACA 50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000020004.8 ENSMUST00000218025.2 |
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| CDS CCA 72 bp | AATCAGAACAACTGTTACCCCCACTGCATCTGCATCTaGGATGAGTCCTGCATTCGGTGCATCAGCCTGAAA | + |
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Preference number: 6 (lower is better) Translates to: NQNNCYPHCICI*DESCIRCISLK Trigger: TTTCAGGCTGATGCACCGAATGCAGGACTCATCCCAGATGCAGATGCAGTGGGGGTAACAGTTGTTCTGATT 50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 4 transcripts: ENSMUST00000020004.8 ENSMUST00000218025.2 ENSMUST00000219271.2 ENSMUST00000219282.2 |
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| CDS CAA 90 bp | TTTCTGACGTGGACCATCCCTTTGACGCTGACGGTAATGCATCTGTaGAAAGAAGGGACTGTAGATTTGGGTTACTGCTCTCTGCATCTT | + |
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Preference number: 6 (lower is better) Translates to: FLTWTIPLTLTVMHL*KEGTVDLGYCSLHL Trigger: AAGATGCAGAGAGCAGTAACCCAAATCTACAGTCCCTTCTTTCAACAGATGCATTACCGTCAGCGTCAAAGGGATGGTCCACGTCAGAAA 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000020004.8 ENSMUST00000219271.2 ENSMUST00000219282.2 |
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| CDS CAA 72 bp | TGGACCATCCCTTTGACGCTGACGGTAATGCATCTGTaGAAAGAAGGGACTGTAGATTTGGGTTACTGCTCT | + |
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Preference number: 6 (lower is better) Translates to: WTIPLTLTVMHL*KEGTVDLGYCS Trigger: AGAGCAGTAACCCAAATCTACAGTCCCTTCTTTCAACAGATGCATTACCGTCAGCGTCAAAGGGATGGTCCA 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000020004.8 ENSMUST00000219271.2 ENSMUST00000219282.2 |
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| CDS CAA 90 bp | TTCAGTGTATTCATTATTTACATAGTAGCCAACTCTAATAAATTCTaGACCTCGGTAGGTGCAAGTAATCAGAACAACTGTTACCCCCAC | + |
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Preference number: 6 (lower is better) Translates to: FSVFIIYIVANSNKF*TSVGASNQNNCYPH Trigger: GTGGGGGTAACAGTTGTTCTGATTACTTGCACCTACCGAGGTCAAGAATTTATTAGAGTTGGCTACTATGTAAATAATGAATACACTGAA 38% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 4 transcripts: ENSMUST00000020004.8 ENSMUST00000218025.2 ENSMUST00000219271.2 ENSMUST00000219282.2 |
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