Pregenerated sensors for ASCL5 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000097918Ensembl transcript IDs: ENSMUST00000180436.2
Found 9 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
Type | Sensor | Details |
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CDS GCA 90 bp | GGGATCCACTGGACTCGGCCACCAAGGAAGAGGGCTGCGGCACGTTaGTGTGGCCCGTGTGGGCGGGCGGCGGGGAGGTGGCGGGAGGTG | + |
Preference number: 5 (lower is better) Translates to: GIHWTRPPRKRAAAR*CGPCGRAAGRWREV Trigger: CACCTCCCGCCACCTCCCCGCCGCCCGCCCACACGGGCCACAGCAACGTGCCGCAGCCCTCTTCCTTGGTGGCCGAGTCCAGTGGATCCC 73% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000180436.2 |
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CDS CCA 90 bp | AGTGGCCGGGGTACAATAGAAAGGGTACGTTGCTCAAGGGTTCGGTaGCTGCCAGCGGCGTCTGTCCAGCAGGGGCCACGACACCTAGCT | + |
Preference number: 5 (lower is better) Translates to: SGRGTIERVRCSRVR*LPAASVQQGPRHLA Trigger: AGCTAGGTGTCGTGGCCCCTGCTGGACAGACGCCGCTGGCAGCCACCGAACCCTTGAGCAACGTACCCTTTCTATTGTACCCCGGCCACT 62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000180436.2 |
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CDS CCA 72 bp | TCGGCCACCAAGGAAGAGGGCTGCGGCACGTTGCTGTaGCCCGTGTGGGCGGGCGGCGGGGAGGTGGCGGGA | + |
Preference number: 6 (lower is better) Translates to: SATKEEGCGTLL*PVWAGGGEVAG Trigger: TCCCGCCACCTCCCCGCCGCCCGCCCACACGGGCCACAGCAACGTGCCGCAGCCCTCTTCCTTGGTGGCCGA 75% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000180436.2 |
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CDS GCA 72 bp | TGGACTCGGCCACCAAGGAAGAGGGCTGCGGCACGTTaGTGTGGCCCGTGTGGGCGGGCGGCGGGGAGGTGG | + |
Preference number: 6 (lower is better) Translates to: WTRPPRKRAAAR*CGPCGRAAGRW Trigger: CCACCTCCCCGCCGCCCGCCCACACGGGCCACAGCAACGTGCCGCAGCCCTCTTCCTTGGTGGCCGAGTCCA 74% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000180436.2 |
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CDS CAA 72 bp | CTGGACTCGGCCACCAAGGAAGAGGGCTGCGGCACGTaGCTGTGGCCCGTGTGGGCGGGCGGCGGGGAGGTG | + |
Preference number: 6 (lower is better) Translates to: LDSATKEEGCGT*LWPVWAGGGEV Trigger: CACCTCCCCGCCGCCCGCCCACACGGGCCACAGCAACGTGCCGCAGCCCTCTTCCTTGGTGGCCGAGTCCAG 74% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000180436.2 |
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CDS CAA 90 bp | GGGGATCCACTGGACTCGGCCACCAAGGAAGAGGGCTGCGGCACGTaGCTGTGGCCCGTGTGGGCGGGCGGCGGGGAGGTGGCGGGAGGT | + |
Preference number: 6 (lower is better) Translates to: GDPLDSATKEEGCGT*LWPVWAGGGEVAGG Trigger: ACCTCCCGCCACCTCCCCGCCGCCCGCCCACACGGGCCACAGCAACGTGCCGCAGCCCTCTTCCTTGGTGGCCGAGTCCAGTGGATCCCC 73% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000180436.2 |
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CDS GCA 72 bp | GGGGATCCACTGGACTCGGCCACCAAGGAAGAGGGCTaGGGCACGTTGCTGTGGCCCGTGTGGGCGGGCGGC | + |
Preference number: 6 (lower is better) Translates to: GDPLDSATKEEG*GTLLWPVWAGG Trigger: GCCGCCCGCCCACACGGGCCACAGCAACGTGCCGCAGCCCTCTTCCTTGGTGGCCGAGTCCAGTGGATCCCC 72% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000180436.2 |
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CDS GCA 72 bp | GCTCGGAGTGGCCGGGGTACAATAGAAAGGGTACGTTaGTCAAGGGTTCGGTGGCTGCCAGCGGCGTCTGTC | + |
Preference number: 6 (lower is better) Translates to: ARSGRGTIERVR*SRVRWLPAASV Trigger: GACAGACGCCGCTGGCAGCCACCGAACCCTTGAGCAACGTACCCTTTCTATTGTACCCCGGCCACTCCGAGC 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000180436.2 |
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CDS CAA 72 bp | GGCTCGGAGTGGCCGGGGTACAATAGAAAGGGTACGTaGCTCAAGGGTTCGGTGGCTGCCAGCGGCGTCTGT | + |
Preference number: 6 (lower is better) Translates to: GSEWPGYNRKGT*LKGSVAASGVC Trigger: ACAGACGCCGCTGGCAGCCACCGAACCCTTGAGCAACGTACCCTTTCTATTGTACCCCGGCCACTCCGAGCC 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000180436.2 |