Pregenerated sensors for ASCL5 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000097918

Ensembl transcript IDs: ENSMUST00000180436.2

Found 9 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type	Sensor	Details
CDS GCA 90 bp	GGGATCCACTGGACTCGGCCACCAAGGAAGAGGGCTGCGGCACGTTaGTGTGGCCCGTGTGGGCGGGCGGCGGGGAGGTGGCGGGAGGTG	+
Preference number: 5 (lower is better) Translates to: GIHWTRPPRKRAAAR*CGPCGRAAGRWREV Trigger: CACCTCCCGCCACCTCCCCGCCGCCCGCCCACACGGGCCACAGCAACGTGCCGCAGCCCTCTTCCTTGGTGGCCGAGTCCAGTGGATCCC 73% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000180436.2
CDS CCA 90 bp	AGTGGCCGGGGTACAATAGAAAGGGTACGTTGCTCAAGGGTTCGGTaGCTGCCAGCGGCGTCTGTCCAGCAGGGGCCACGACACCTAGCT	+
Preference number: 5 (lower is better) Translates to: SGRGTIERVRCSRVR*LPAASVQQGPRHLA Trigger: AGCTAGGTGTCGTGGCCCCTGCTGGACAGACGCCGCTGGCAGCCACCGAACCCTTGAGCAACGTACCCTTTCTATTGTACCCCGGCCACT 62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000180436.2
CDS CCA 72 bp	TCGGCCACCAAGGAAGAGGGCTGCGGCACGTTGCTGTaGCCCGTGTGGGCGGGCGGCGGGGAGGTGGCGGGA	+
Preference number: 6 (lower is better) Translates to: SATKEEGCGTLL*PVWAGGGEVAG Trigger: TCCCGCCACCTCCCCGCCGCCCGCCCACACGGGCCACAGCAACGTGCCGCAGCCCTCTTCCTTGGTGGCCGA 75% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000180436.2
CDS GCA 72 bp	TGGACTCGGCCACCAAGGAAGAGGGCTGCGGCACGTTaGTGTGGCCCGTGTGGGCGGGCGGCGGGGAGGTGG	+
Preference number: 6 (lower is better) Translates to: WTRPPRKRAAAR*CGPCGRAAGRW Trigger: CCACCTCCCCGCCGCCCGCCCACACGGGCCACAGCAACGTGCCGCAGCCCTCTTCCTTGGTGGCCGAGTCCA 74% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000180436.2
CDS CAA 72 bp	CTGGACTCGGCCACCAAGGAAGAGGGCTGCGGCACGTaGCTGTGGCCCGTGTGGGCGGGCGGCGGGGAGGTG	+
Preference number: 6 (lower is better) Translates to: LDSATKEEGCGT*LWPVWAGGGEV Trigger: CACCTCCCCGCCGCCCGCCCACACGGGCCACAGCAACGTGCCGCAGCCCTCTTCCTTGGTGGCCGAGTCCAG 74% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000180436.2
CDS CAA 90 bp	GGGGATCCACTGGACTCGGCCACCAAGGAAGAGGGCTGCGGCACGTaGCTGTGGCCCGTGTGGGCGGGCGGCGGGGAGGTGGCGGGAGGT	+
Preference number: 6 (lower is better) Translates to: GDPLDSATKEEGCGT*LWPVWAGGGEVAGG Trigger: ACCTCCCGCCACCTCCCCGCCGCCCGCCCACACGGGCCACAGCAACGTGCCGCAGCCCTCTTCCTTGGTGGCCGAGTCCAGTGGATCCCC 73% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000180436.2
CDS GCA 72 bp	GGGGATCCACTGGACTCGGCCACCAAGGAAGAGGGCTaGGGCACGTTGCTGTGGCCCGTGTGGGCGGGCGGC	+
Preference number: 6 (lower is better) Translates to: GDPLDSATKEEG*GTLLWPVWAGG Trigger: GCCGCCCGCCCACACGGGCCACAGCAACGTGCCGCAGCCCTCTTCCTTGGTGGCCGAGTCCAGTGGATCCCC 72% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000180436.2
CDS GCA 72 bp	GCTCGGAGTGGCCGGGGTACAATAGAAAGGGTACGTTaGTCAAGGGTTCGGTGGCTGCCAGCGGCGTCTGTC	+
Preference number: 6 (lower is better) Translates to: ARSGRGTIERVR*SRVRWLPAASV Trigger: GACAGACGCCGCTGGCAGCCACCGAACCCTTGAGCAACGTACCCTTTCTATTGTACCCCGGCCACTCCGAGC 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000180436.2
CDS CAA 72 bp	GGCTCGGAGTGGCCGGGGTACAATAGAAAGGGTACGTaGCTCAAGGGTTCGGTGGCTGCCAGCGGCGTCTGT	+
Preference number: 6 (lower is better) Translates to: GSEWPGYNRKGT*LKGSVAASGVC Trigger: ACAGACGCCGCTGGCAGCCACCGAACCCTTGAGCAACGTACCCTTTCTATTGTACCCCGGCCACTCCGAGCC 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000180436.2