Pregenerated sensors for ASCL4 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000085111Ensembl transcript IDs: ENSMUST00000156605.2, ENSMUST00000170396.3
Found 38 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR TCA 90 bp | TGCATTTCCCAATTGGAAGGAATGAGTGAGAATGTTCCTCTCGCGTaGAGGACTGTCTCGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTG | + |
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Preference number: 1 (lower is better) Translates to: CISQLEGMSENVPLA*RTVSCVCVCVCVCV Trigger: CACACACACACACACACACACACACACACACGAGACAGTCCTTCACGCGAGAGGAACATTCTCACTCATTCCTTCCAATTGGGAAATGCA 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000170396.3 |
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| 3UTR TCA 90 bp | GAGGTGTTGAGATTTCCAGTGCATTTCCCAATTGGAAGGAATGAGTaGGAATGTTCCTCTCGCGTGAAGGACTGTCTCGTGTGTGTGTGT | + |
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Preference number: 1 (lower is better) Translates to: EVLRFPVHFPIGRNE*ECSSRVKDCLVCVC Trigger: ACACACACACACGAGACAGTCCTTCACGCGAGAGGAACATTCTCACTCATTCCTTCCAATTGGGAAATGCACTGGAAATCTCAACACCTC 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000170396.3 |
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| 3UTR-3UTR TCA 90 bp | TTCCAAGCAAAGGTTAGACGGGATGAGAACTGTACAGGGGAACACATAGACAAACCGGAGAAGCAACCATaGAAGCCCAGTGGGCTAGGA | + |
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Preference number: 2 (lower is better) Translates to: FQAKVRRDENCTGEHIDKPEKQP*KPSGLG Trigger: TCCTAGCCCACTGGGCTTTCATGGTTGCTTCTCCGG...TTTGTCTATGTGTTCCCCTGTACAGTTCTCATCCCGTCTAACCTTTGCTTGGAA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000170396.3 |
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| 3UTR-3UTR TCA 90 bp | CGGGAGAGAAGATGGCCATTCAGAGCTCCTCCAAAAAGATCATTAACTTCGCGGGTGTCCTACCCTCAGTaGGGTGTTGAGATTTCCAGT | + |
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Preference number: 2 (lower is better) Translates to: RERRWPFRAPPKRSLTSRVSYPQ*GVEISS Trigger: ACTGGAAATCTCAACACCTCACTGAGGGTAGGACAC...CCGCGAAGTTAATGATCTTTTTGGAGGAGCTCTGAATGGCCATCTTCTCTCCCG 50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000170396.3 |
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| 3UTR-3UTR TCA 90 bp | CGGGAGAGAAGATGGCCATTCAGAGCTCCTCCAAAAAGATCATTAACTTCGCGGATTGGAAGGAATGAGTaGGAATGTTCCTCTCGCGTG | + |
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Preference number: 2 (lower is better) Translates to: RERRWPFRAPPKRSLTSRIGRNE*ECSSRV Trigger: CACGCGAGAGGAACATTCTCACTCATTCCTTCCAAT...CCGCGAAGTTAATGATCTTTTTGGAGGAGCTCTGAATGGCCATCTTCTCTCCCG 49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000170396.3 |
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| 3UTR-3UTR TCA 90 bp | TCAAGCATTGTCCTTTTTAGCACAGCGACGTTCAGGTCCAGCAGATGCTCCACACCCAATTGGAAGGAATaGGTGAGAATGTTCCTCTCG | + |
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Preference number: 2 (lower is better) Translates to: SSIVLFSTATFRSSRCSTPNWKE*VRMFLS Trigger: CGAGAGGAACATTCTCACTCATTCCTTCCAATTGGG...TGTGGAGCATCTGCTGGACCTGAACGTCGCTGTGCTAAAAAGGACAATGCTTGA 49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000170396.3 |
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| 3UTR-3UTR CCA 90 bp | CCGGGAGAGAAGATGGCCATTCAGAGCTCCTCCAAAAAGATCATTAACTTCGCGCGCATAGATTTGAGATaGCCCTTCTGTGCTTCAAAA | + |
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Preference number: 2 (lower is better) Translates to: PGEKMAIQSSSKKIINFARIDLR*PFCASK Trigger: TTTTGAAGCACAGAAGGGCCATCTCAAATCTATGCG...CGCGAAGTTAATGATCTTTTTGGAGGAGCTCTGAATGGCCATCTTCTCTCCCGG 47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000170396.3 |
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| 3UTR-3UTR CCA 90 bp | CACAGCGACGTTCAGGTCCAGCAGATGCTCCACAAATGTCTTATGGAGTGTCCTTGTGTGTTTCTTCTCTaGCTAAGGTTTCTTAAAGTC | + |
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Preference number: 2 (lower is better) Translates to: HSDVQVQQMLHKCLMECPCVFLL*LRFLKV Trigger: GACTTTAAGAAACCTTAGCCAGAGAAGAAACACACA...AGGACACTCCATAAGACATTTGTGGAGCATCTGCTGGACCTGAACGTCGCTGTG 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000170396.3 |
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| 3UTR-3UTR CCA 90 bp | TTCCAAGCAAAGGTTAGACGGGATGAGAACTGTACAGGGGAACACATAGACAAATCCACAAATGTCTTATaGAGTGTCCTACCCTCAGTG | + |
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Preference number: 2 (lower is better) Translates to: FQAKVRRDENCTGEHIDKSTNVL*SVLPSV Trigger: CACTGAGGGTAGGACACTCCATAAGACATTTGTGGA...TTTGTCTATGTGTTCCCCTGTACAGTTCTCATCCCGTCTAACCTTTGCTTGGAA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000170396.3 |
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| 3UTR TCA 72 bp | CAATTGGAAGGAATGAGTGAGAATGTTCCTCTCGCGTaGAGGACTGTCTCGTGTGTGTGTGTGTGTGTGTGT | + |
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Preference number: 3 (lower is better) Translates to: QLEGMSENVPLA*RTVSCVCVCVC Trigger: ACACACACACACACACACACACGAGACAGTCCTTCACGCGAGAGGAACATTCTCACTCATTCCTTCCAATTG 49% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000170396.3 |
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| 3UTR-3UTR CAA 90 bp | CAAGCATTGTCCTTTTTAGCACAGCGACGTTCAGGTCCAGCAGATGCTCCACAACAGTGCATTTCCCAATaGGAAGGAATGAGTGAGAAT | + |
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Preference number: 3 (lower is better) Translates to: QALSFLAQRRSGPADAPQQCISQ*EGMSEN Trigger: ATTCTCACTCATTCCTTCCAATTGGGAAATGCACTG...TTGTGGAGCATCTGCTGGACCTGAACGTCGCTGTGCTAAAAAGGACAATGCTTG 47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000170396.3 |
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| 3UTR TCA 72 bp | AGATTTCCAGTGCATTTCCCAATTGGAAGGAATGAGTaGGAATGTTCCTCTCGCGTGAAGGACTGTCTCGTG | + |
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Preference number: 3 (lower is better) Translates to: RFPVHFPIGRNE*ECSSRVKDCLV Trigger: CACGAGACAGTCCTTCACGCGAGAGGAACATTCTCACTCATTCCTTCCAATTGGGAAATGCACTGGAAATCT 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000170396.3 |
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| 3UTR TCA 72 bp | GCTCCACAAATGTCTTATGGAGTGTCCTACCCTCAGTaGGGTGTTGAGATTTCCAGTGCATTTCCCAATTGG | + |
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Preference number: 3 (lower is better) Translates to: APQMSYGVSYPQ*GVEISSAFPNW Trigger: CCAATTGGGAAATGCACTGGAAATCTCAACACCTCACTGAGGGTAGGACACTCCATAAGACATTTGTGGAGC 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000170396.3 |
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| 3UTR TCA 72 bp | GTTGAGATTTCCAGTGCATTTCCCAATTGGAAGGAATaGGTGAGAATGTTCCTCTCGCGTGAAGGACTGTCT | + |
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Preference number: 3 (lower is better) Translates to: VEISSAFPNWKE*VRMFLSREGLS Trigger: AGACAGTCCTTCACGCGAGAGGAACATTCTCACTCATTCCTTCCAATTGGGAAATGCACTGGAAATCTCAAC 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000170396.3 |
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| 3UTR CCA 72 bp | GTGTGTGTGTGTGTGTGTGTGTGTGTGTTTCTTCTCTaGCTAAGGTTTCTTAAAGTCCTTTGTGTTTTTAAA | + |
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Preference number: 3 (lower is better) Translates to: VCVCVCVCVFLL*LRFLKVLCVFK Trigger: TTTAAAAACACAAAGGACTTTAAGAAACCTTAGCCAGAGAAGAAACACACACACACACACACACACACACAC 39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000170396.3 |
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| 3UTR TCA 72 bp | GAACTTATGATCCTGAAAATTTTCTTCATTGGACCTTaGACTTTCTCATCTGGTCTGACGTATGGTTCTGTT | + |
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Preference number: 3 (lower is better) Translates to: ELMILKIFFIGP*TFSSGLTYGSV Trigger: AACAGAACCATACGTCAGACCAGATGAGAAAGTTCAAGGTCCAATGAAGAAAATTTTCAGGATCATAAGTTC 38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000156605.2 |
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| CDS-3UTR CCA 90 bp | CCGGGAGAGAAGATGGCCATTCAGAGCTCCTCCAAAAAGATCATTAACTTCGCGTTGCAGTCCGGCCGGTaGCGCTCCAGCAGCTCCTGC | + |
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Preference number: 4 (lower is better) Translates to: PGEKMAIQSSSKKIINFALQSGR*RSSSSC Trigger: GCAGGAGCTGCTGGAGCGCCACCGGCCGGACTGCAA...CGCGAAGTTAATGATCTTTTTGGAGGAGCTCTGAATGGCCATCTTCTCTCCCGG 58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000170396.3 |
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| CDS-3UTR TCA 90 bp | TTCCAAGCAAAGGTTAGACGGGATGAGAACTGTACAGGGGAACACATAGACAAAGCGTCTCCACCTTGCTaGGCCGCTGGCCCGCCAGCT | + |
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Preference number: 4 (lower is better) Translates to: FQAKVRRDENCTGEHIDKASPPC*AAGPPA Trigger: AGCTGGCGGGCCAGCGGCTCAGCAAGGTGGAGACGC...TTTGTCTATGTGTTCCCCTGTACAGTTCTCATCCCGTCTAACCTTTGCTTGGAA 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000170396.3 |
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| CDS-3UTR CCA 90 bp | CCGGGAGAGAAGATGGCCATTCAGAGCTCCTCCAAAAAGATCATTAACTTCGCGTCGCGCTCGTTGCGTTaGCGCAAAAAGGCGGGCTCG | + |
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Preference number: 4 (lower is better) Translates to: PGEKMAIQSSSKKIINFASRSLR*RKKAGS Trigger: CGAGCCCGCCTTTTTGCGCCAACGCAACGAGCGCGA...CGCGAAGTTAATGATCTTTTTGGAGGAGCTCTGAATGGCCATCTTCTCTCCCGG 56% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000170396.3 |
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| CDS-3UTR GCA 90 bp | TTCCAAGCAAAGGTTAGACGGGATGAGAACTGTACAGGGGAACACATAGACAAAACACAGCGCACGCGCTaGCGCTCGCGCTCGTTGCGT | + |
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Preference number: 4 (lower is better) Translates to: FQAKVRRDENCTGEHIDKTQRTR*RSRSLR Trigger: ACGCAACGAGCGCGAGCGGCAGCGCGTGCGCTGTGT...TTTGTCTATGTGTTCCCCTGTACAGTTCTCATCCCGTCTAACCTTTGCTTGGAA 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000170396.3 |
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| 3UTR CAA 72 bp | AAATGTCTTATGGAGTGTCCTACCCTCAGTGAGGTGTaGAGATTTCCAGTGCATTTCCCAATTGGAAGGAAT | + |
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Preference number: 4 (lower is better) Translates to: KCLMECPTLSEV*RFPVHFPIGRN Trigger: ATTCCTTCCAATTGGGAAATGCACTGGAAATCTCAACACCTCACTGAGGGTAGGACACTCCATAAGACATTT 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000170396.3 |
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| CDS CCA 90 bp | GGCAGGGACGAGTACGGCCGTCTCCGCGCGCAGTCCGCGGCATCCTaGCGCACCGAGACCCTGCAGGGCTCCCTCCCGGGCAGCGCGCCC | + |
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Preference number: 5 (lower is better) Translates to: GRDEYGRLRAQSAAS*RTETLQGSLPGSAP Trigger: GGGCGCGCTGCCCGGGAGGGAGCCCTGCAGGGTCTCGGTGCGCCAGGATGCCGCGGACTGCGCGCGGAGACGGCCGTACTCGTCCCTGCC 78% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000170396.3 |
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| CDS GCA 90 bp | GCCGTCTCCGCGCGCAGTCCGCGGCATCCTGGCGCACCGAGACCCTaGAGGGCTCCCTCCCGGGCAGCGCGCCCAGCGGCGCTGTACGTA | + |
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Preference number: 5 (lower is better) Translates to: AVSARSPRHPGAPRP*RAPSRAARPAALYV Trigger: TACGTACAGCGCCGCTGGGCGCGCTGCCCGGGAGGGAGCCCTGCAGGGTCTCGGTGCGCCAGGATGCCGCGGACTGCGCGCGGAGACGGC 77% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000170396.3 |
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| CDS GCA 90 bp | CTAGCTACGCTCCTCAGACTCGCTGCAGGGCGAGGCTCCGGAGGATaGTTTGGACTCGCCATCGCTGTTGCAGTCCGGCCGGTGGCGCTC | + |
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Preference number: 5 (lower is better) Translates to: LATLLRLAAGRGSGG*FGLAIAVAVRPVAL Trigger: GAGCGCCACCGGCCGGACTGCAACAGCGATGGCGAGTCCAAAGCATCCTCCGGAGCCTCGCCCTGCAGCGAGTCTGAGGAGCGTAGCTAG 67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000156605.2 ENSMUST00000170396.3 |
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| CDS CCA 90 bp | TACGCTCCTCAGACTCGCTGCAGGGCGAGGCTCCGGAGGATGCTTTaGACTCGCCATCGCTGTTGCAGTCCGGCCGGTGGCGCTCCAGCA | + |
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Preference number: 5 (lower is better) Translates to: YAPQTRCRARLRRML*TRHRCCSPAGGAPA Trigger: TGCTGGAGCGCCACCGGCCGGACTGCAACAGCGATGGCGAGTCCAAAGCATCCTCCGGAGCCTCGCCCTGCAGCGAGTCTGAGGAGCGTA 67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000156605.2 ENSMUST00000170396.3 |
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| CDS-3UTR CAA 90 bp | CGGGAGAGAAGATGGCCATTCAGAGCTCCTCCAAAAAGATCATTAACTTCGCGGCGCAGCGTCTCCACCTaGCTGAGCCGCTGGCCCGCC | + |
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Preference number: 5 (lower is better) Translates to: RERRWPFRAPPKRSLTSRRSVST*LSRWPA Trigger: GGCGGGCCAGCGGCTCAGCAAGGTGGAGACGCTGCG...CCGCGAAGTTAATGATCTTTTTGGAGGAGCTCTGAATGGCCATCTTCTCTCCCG 60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000170396.3 |
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| CDS-3UTR CAA 90 bp | CGTTCAGGTCCAGCAGATGCTCCACAAATGTCTTATGGAGTGTCCTACCCTCAGCTCGCGCTCGTTGCGTaGGCGCAAAAAGGCGGGCTC | + |
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Preference number: 5 (lower is better) Translates to: RSGPADAPQMSYGVSYPQLALVA*AQKGGL Trigger: GAGCCCGCCTTTTTGCGCCAACGCAACGAGCGCGAG...CTGAGGGTAGGACACTCCATAAGACATTTGTGGAGCATCTGCTGGACCTGAACG 58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000170396.3 |
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| CDS-3UTR CAA 90 bp | TACCTTTCTTTCCTAGATCCAGAAGCACTTAGTTGTTTTCTGGTTTTTGGTTTTTGCCGCTCGCGCTCGTaGCGTTGGCGCAAAAAGGCG | + |
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Preference number: 5 (lower is better) Translates to: YLSFLDPEALSCFLVFGFCRSRS*RWRKKA Trigger: CGCCTTTTTGCGCCAACGCAACGAGCGCGAGCGGCA...AAAACCAAAAACCAGAAAACAACTAAGTGCTTCTGGATCTAGGAAAGAAAGGTA 48% GC, longest homopolymer 5 nt, total homopolymer stretches 19 nt. Matches the following 1 transcripts: ENSMUST00000170396.3 |
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| CDS CCA 72 bp | GAGTACGGCCGTCTCCGCGCGCAGTCCGCGGCATCCTaGCGCACCGAGACCCTGCAGGGCTCCCTCCCGGGC | + |
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Preference number: 6 (lower is better) Translates to: EYGRLRAQSAAS*RTETLQGSLPG Trigger: GCCCGGGAGGGAGCCCTGCAGGGTCTCGGTGCGCCAGGATGCCGCGGACTGCGCGCGGAGACGGCCGTACTC 76% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000170396.3 |
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| CDS GCA 72 bp | CGTTCACACAGCGCACGCGCTGCCGCTCGCGCTCGTTaGGTTGGCGCAAAAAGGCGGGCTCGGCGACGCCCC | + |
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Preference number: 6 (lower is better) Translates to: RSHSARAAARAR*VGAKRRARRRP Trigger: GGGGCGTCGCCGAGCCCGCCTTTTTGCGCCAACGCAACGAGCGCGAGCGGCAGCGCGTGCGCTGTGTGAACG 72% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000170396.3 |
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| CDS CAA 72 bp | CACACAGCGCACGCGCTGCCGCTCGCGCTCGTTGCGTaGGCGCAAAAAGGCGGGCTCGGCGACGCCCCCAAG | + |
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Preference number: 6 (lower is better) Translates to: HTAHALPLALVA*AQKGGLGDAPK Trigger: CTTGGGGGCGTCGCCGAGCCCGCCTTTTTGCGCCAACGCAACGAGCGCGAGCGGCAGCGCGTGCGCTGTGTG 72% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000170396.3 |
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| CDS CAA 90 bp | CTACGCTCCTCAGACTCGCTGCAGGGCGAGGCTCCGGAGGATGCTTaGGACTCGCCATCGCTGTTGCAGTCCGGCCGGTGGCGCTCCAGC | + |
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Preference number: 6 (lower is better) Translates to: LRSSDSLQGEAPEDA*DSPSLLQSGRWRSS Trigger: GCTGGAGCGCCACCGGCCGGACTGCAACAGCGATGGCGAGTCCAAAGCATCCTCCGGAGCCTCGCCCTGCAGCGAGTCTGAGGAGCGTAG 68% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000156605.2 ENSMUST00000170396.3 |
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| CDS CCA 72 bp | CAGACTCGCTGCAGGGCGAGGCTCCGGAGGATGCTTTaGACTCGCCATCGCTGTTGCAGTCCGGCCGGTGGC | + |
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Preference number: 6 (lower is better) Translates to: QTRCRARLRRML*TRHRCCSPAGG Trigger: GCCACCGGCCGGACTGCAACAGCGATGGCGAGTCCAAAGCATCCTCCGGAGCCTCGCCCTGCAGCGAGTCTG 68% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000156605.2 ENSMUST00000170396.3 |
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| CDS CAA 72 bp | GAGGCTCCGGAGGATGCTTTGGACTCGCCATCGCTGTaGCAGTCCGGCCGGTGGCGCTCCAGCAGCTCCTGC | + |
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Preference number: 6 (lower is better) Translates to: EAPEDALDSPSL*QSGRWRSSSSC Trigger: GCAGGAGCTGCTGGAGCGCCACCGGCCGGACTGCAACAGCGATGGCGAGTCCAAAGCATCCTCCGGAGCCTC 68% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000156605.2 ENSMUST00000170396.3 |
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| CDS CAA 90 bp | CTGCAGGGCGAGGCTCCGGAGGATGCTTTGGACTCGCCATCGCTGTaGCAGTCCGGCCGGTGGCGCTCCAGCAGCTCCTGCAGTTGCTTG | + |
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Preference number: 6 (lower is better) Translates to: LQGEAPEDALDSPSL*QSGRWRSSSSCSCL Trigger: CAAGCAACTGCAGGAGCTGCTGGAGCGCCACCGGCCGGACTGCAACAGCGATGGCGAGTCCAAAGCATCCTCCGGAGCCTCGCCCTGCAG 67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000156605.2 ENSMUST00000170396.3 |
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| CDS GCA 72 bp | AGGCTCCGGAGGATGCTTTGGACTCGCCATCGCTGTTaGAGTCCGGCCGGTGGCGCTCCAGCAGCTCCTGCA | + |
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Preference number: 6 (lower is better) Translates to: RLRRMLWTRHRC*SPAGGAPAAPA Trigger: TGCAGGAGCTGCTGGAGCGCCACCGGCCGGACTGCAACAGCGATGGCGAGTCCAAAGCATCCTCCGGAGCCT 67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000156605.2 ENSMUST00000170396.3 |
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| CDS GCA 72 bp | CTCCTCAGACTCGCTGCAGGGCGAGGCTCCGGAGGATaGTTTGGACTCGCCATCGCTGTTGCAGTCCGGCCG | + |
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Preference number: 6 (lower is better) Translates to: LLRLAAGRGSGG*FGLAIAVAVRP Trigger: CGGCCGGACTGCAACAGCGATGGCGAGTCCAAAGCATCCTCCGGAGCCTCGCCCTGCAGCGAGTCTGAGGAG 67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000156605.2 ENSMUST00000170396.3 |
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| CDS CAA 72 bp | TCAGACTCGCTGCAGGGCGAGGCTCCGGAGGATGCTTaGGACTCGCCATCGCTGTTGCAGTCCGGCCGGTGG | + |
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Preference number: 6 (lower is better) Translates to: SDSLQGEAPEDA*DSPSLLQSGRW Trigger: CCACCGGCCGGACTGCAACAGCGATGGCGAGTCCAAAGCATCCTCCGGAGCCTCGCCCTGCAGCGAGTCTGA 67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000156605.2 ENSMUST00000170396.3 |
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