Pregenerated sensors for ASCL3 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000035951Ensembl transcript IDs: ENSMUST00000035372.3
Found 12 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR TCA 72 bp | TTGGGAGGTACTGTTGTGTCCTCGAAACCATGTGTATaGGAATGTACTGGCTGCGGCAGCAGAAGACTCCCA | + |
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Preference number: 3 (lower is better) Translates to: LGGTVVSSKPCV*ECTGCGSRRLP Trigger: TGGGAGTCTTCTGCTGCCGCAGCCAGTACATTCTCATACACATGGTTTCGAGGACACAACAGTACCTCCCAA 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000035372.3 |
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| 3UTR CCA 72 bp | TGTTGTGTCCTCGAAACCATGTGTATGAGAATGTACTaGCTGCGGCAGCAGAAGACTCCCATTCGAGGAAGA | + |
|
Preference number: 3 (lower is better) Translates to: CCVLETMCMRMY*LRQQKTPIRGR Trigger: TCTTCCTCGAATGGGAGTCTTCTGCTGCCGCAGCCAGTACATTCTCATACACATGGTTTCGAGGACACAACA 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000035372.3 |
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| CDS-3UTR GCA 90 bp | TGTATGAGAATGTACTGGCTGCGGCAGCAGAAGACTCCCATTCGAGGAAGAACTACACACTTGACTCGTTaGCTCTCTCGCTCGTTCCTC | + |
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Preference number: 4 (lower is better) Translates to: CMRMYWLRQQKTPIRGRTTHLTR*LSRSFL Trigger: GAGGAACGAGCGAGAGAGGCAACGAGTCAAGTGTGT...AGTTCTTCCTCGAATGGGAGTCTTCTGCTGCCGCAGCCAGTACATTCTCATACA 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000035372.3 |
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| CDS-3UTR CCA 90 bp | CATTTAATGAAGGTTGGTATTGGGAGGTACTGTTGTGTCCTCGAAACCATGTGTGCCTGTCTGGAGGGCTaGGGTAGCTTCTGGTGTCCA | + |
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Preference number: 4 (lower is better) Translates to: HLMKVGIGRYCCVLETMCACLEG*GSFWCP Trigger: TGGACACCAGAAGCTACCCCAGCCCTCCAGACAGGC...ACACATGGTTTCGAGGACACAACAGTACCTCCCAATACCAACCTTCATTAAATG 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000035372.3 |
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| CDS-3UTR CCA 90 bp | CAACATTTAATGAAGGTTGGTATTGGGAGGTACTGTTGTGTCCTCGAAACCATGGACCGAGAGCCTGTCTaGAGGGCTGGGGTAGCTTCT | + |
|
Preference number: 4 (lower is better) Translates to: QHLMKVGIGRYCCVLETMDREPV*RAGVAS Trigger: AGAAGCTACCCCAGCCCTCCAGACAGGCTCTCGGTC...CATGGTTTCGAGGACACAACAGTACCTCCCAATACCAACCTTCATTAAATGTTG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000035372.3 |
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| CDS-3UTR CCA 90 bp | AAGCAACATTTAATGAAGGTTGGTATTGGGAGGTACTGTTGTGTCCTCGAAACCAGTTGGTGTAAGGCATaGGGAAGGGAAAAGGGTATG | + |
|
Preference number: 4 (lower is better) Translates to: KQHLMKVGIGRYCCVLETSWCKA*GREKGM Trigger: CATACCCTTTTCCCTTCCCCATGCCTTACACCAACT...GGTTTCGAGGACACAACAGTACCTCCCAATACCAACCTTCATTAAATGTTGCTT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000035372.3 |
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| CDS-3UTR CAA 90 bp | GCAACATTTAATGAAGGTTGGTATTGGGAGGTACTGTTGTGTCCTCGAAACCATCACACACTTGACTCGTaGCCTCTCTCGCTCGTTCCT | + |
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Preference number: 5 (lower is better) Translates to: ATFNEGWYWEVLLCPRNHHTLDS*PLSLVP Trigger: AGGAACGAGCGAGAGAGGCAACGAGTCAAGTGTGTG...ATGGTTTCGAGGACACAACAGTACCTCCCAATACCAACCTTCATTAAATGTTGC 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000035372.3 |
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| CDS-3UTR CAA 90 bp | AAGCAACATTTAATGAAGGTTGGTATTGGGAGGTACTGTTGTGTCCTCGAAACCGTTCGAGGGTTCTTCTaGGTCTCAGATTCATCCGGG | + |
|
Preference number: 5 (lower is better) Translates to: KQHLMKVGIGRYCCVLETVRGFF*VSDSSG Trigger: CCCGGATGAATCTGAGACCAAGAAGAACCCTCGAAC...GGTTTCGAGGACACAACAGTACCTCCCAATACCAACCTTCATTAAATGTTGCTT 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000035372.3 |
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| CDS TCA 72 bp | GCCGCCGCAGCCGGGCGTAGCCTTCGTTCACACACTTaGCTCGTTGCCTCTCTCGCTCGTTCCTCTTGCGGA | + |
|
Preference number: 6 (lower is better) Translates to: AAAAGRSLRSHT*LVASLARSSCG Trigger: TCCGCAAGAGGAACGAGCGAGAGAGGCAACGAGTCAAGTGTGTGAACGAAGGCTACGCCCGGCTGCGGCGGC 64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000035372.3 |
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| CDS CAA 72 bp | TCCAGGGAGCCGCAGCTGGCTGTTCGAGGGTTCTTCTaGGTCTCAGATTCATCCGGGTACAAGAGAGACTGC | + |
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Preference number: 6 (lower is better) Translates to: SREPQLAVRGFF*VSDSSGYKRDC Trigger: GCAGTCTCTCTTGTACCCGGATGAATCTGAGACCAAGAAGAACCCTCGAACAGCCAGCTGCGGCTCCCTGGA 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000035372.3 |
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| CDS TCA 72 bp | GGAAGGGAAAAGGGTATGGATCCCCGTAATTGTTCATaGTCAGGGTGTCGCTGGAGAAGGGCAGCAGAGGCA | + |
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Preference number: 6 (lower is better) Translates to: GREKGMDPRNCS*SGCRWRRAAEA Trigger: TGCCTCTGCTGCCCTTCTCCAGCGACACCCTGATCATGAACAATTACGGGGATCCATACCCTTTTCCCTTCC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000035372.3 |
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| CDS CCA 72 bp | AGGTGTAGTCACAGCGCCTGTAGTTGGTGTAAGGCATaGGGAAGGGAAAAGGGTATGGATCCCCGTAATTGT | + |
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Preference number: 6 (lower is better) Translates to: RCSHSACSWCKA*GREKGMDPRNC Trigger: ACAATTACGGGGATCCATACCCTTTTCCCTTCCCCATGCCTTACACCAACTACAGGCGCTGTGACTACACCT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000035372.3 |
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