Pregenerated sensors for ASCL2 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000009248Ensembl transcript IDs: ENSMUST00000009392.6, ENSMUST00000121862.3
Found 52 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR CCA 90 bp | GTGCAGCCAGGCATCTTGCCCTCAGGGCCCAACCGGTCCACACTTTaGCCAGGTTGGAAAGTTCTAGACAGTGGGGGTGAGGGACAGAGG | + |
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Preference number: 1 (lower is better) Translates to: VQPGILPSGPNRSTL*PGWKVLDSGGEGQR Trigger: CCTCTGTCCCTCACCCCCACTGTCTAGAACTTTCCAACCTGGCCAAAGTGTGGACCGGTTGGGCCCTGAGGGCAAGATGCCTGGCTGCAC 61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000009392.6 |
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| 3UTR CCA 90 bp | CTGATGCTGCAAGGTCCGGAAGATGGAAGATGTCATTCCGCGGCGTaGAGGCCGAGCAGAGGTCAGTCAGCACTTGGCATTTGGTCAGGC | + |
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Preference number: 1 (lower is better) Translates to: LMLQGPEDGRCHSAA*RPSRGQSALGIWSG Trigger: GCCTGACCAAATGCCAAGTGCTGACTGACCTCTGCTCGGCCTCCACGCCGCGGAATGACATCTTCCATCTTCCGGACCTTGCAGCATCAG 59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000009392.6 |
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| 3UTR CCA 90 bp | GGCATCTTGCCCTCAGGGCCCAACCGGTCCACACTTTGGCCAGGTTaGAAAGTTCTAGACAGTGGGGGTGAGGGACAGAGGTCATCTTTA | + |
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Preference number: 1 (lower is better) Translates to: GILPSGPNRSTLWPG*KVLDSGGEGQRSSL Trigger: TAAAGATGACCTCTGTCCCTCACCCCCACTGTCTAGAACTTTCCAACCTGGCCAAAGTGTGGACCGGTTGGGCCCTGAGGGCAAGATGCC 57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000009392.6 |
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| 3UTR CCA 90 bp | TATCCTGAGAAATTTCCAAGTCCTGATGCTGCAAGGTCCGGAAGATaGAAGATGTCATTCCGCGGCGTGGAGGCCGAGCAGAGGTCAGTC | + |
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Preference number: 1 (lower is better) Translates to: YPEKFPSPDAARSGR*KMSFRGVEAEQRSV Trigger: GACTGACCTCTGCTCGGCCTCCACGCCGCGGAATGACATCTTCCATCTTCCGGACCTTGCAGCATCAGGACTTGGAAATTTCTCAGGATA 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000009392.6 |
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| 3UTR CAA 90 bp | GTCAGTATAGGCTTCAGAAGAGGAAGAAGGGTGCAGCCAGGCATCTaGCCCTCAGGGCCCAACCGGTCCACACTTTGGCCAGGTTGGAAA | + |
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Preference number: 2 (lower is better) Translates to: VSIGFRRGRRVQPGI*PSGPNRSTLWPGWK Trigger: TTTCCAACCTGGCCAAAGTGTGGACCGGTTGGGCCCTGAGGGCAAGATGCCTGGCTGCACCCTTCTTCCTCTTCTGAAGCCTATACTGAC 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000009392.6 |
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| 3UTR-3UTR CCA 90 bp | TCCACACTTTGGCCAGGTTGGAAAGTTCTAGACAGTGGGGGTGAGGGACAGAGGGCAAGGTCCGGAAGATaGAAGATGTCATTCCGCGGC | + |
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Preference number: 2 (lower is better) Translates to: STLWPGWKVLDSGGEGQRARSGR*KMSFRG Trigger: GCCGCGGAATGACATCTTCCATCTTCCGGACCTTGC...CCTCTGTCCCTCACCCCCACTGTCTAGAACTTTCCAACCTGGCCAAAGTGTGGA 56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000009392.6 |
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| 3UTR-3UTR CCA 90 bp | GAGAAATTTCCAAGTCCTGATGCTGCAAGGTCCGGAAGATGGAAGATGTCATTCTCAGCACTTGGCATTTaGTCAGGCTGCACTAGACAG | + |
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Preference number: 2 (lower is better) Translates to: EKFPSPDAARSGRWKMSFSALGI*SGCTRQ Trigger: CTGTCTAGTGCAGCCTGACCAAATGCCAAGTGCTGA...GAATGACATCTTCCATCTTCCGGACCTTGCAGCATCAGGACTTGGAAATTTCTC 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000009392.6 |
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| 3UTR-3UTR TCA 90 bp | AAAAACAACTTTTATAGAATAGTACACTTTGCAACAGCAGGGTTCCCACACTGGTCTAGACAGTGGGGGTaGGGGACAGAGGTCATCTTT | + |
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Preference number: 2 (lower is better) Translates to: KNNFYRIVHFATAGFPHWSRQWG*GTEVIF Trigger: AAAGATGACCTCTGTCCCTCACCCCCACTGTCTAGA...CCAGTGTGGGAACCCTGCTGTTGCAAAGTGTACTATTCTATAAAAGTTGTTTTT 44% GC, longest homopolymer 5 nt, total homopolymer stretches 18 nt. Matches the following 1 transcripts: ENSMUST00000009392.6 |
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| 3UTR-3UTR CCA 90 bp | ATGAAAAACAACTTTTATAGAATAGTACACTTTGCAACAGCAGGGTTCCCACACACACTTTGGCCAGGTTaGAAAGTTCTAGACAGTGGG | + |
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Preference number: 2 (lower is better) Translates to: MKNNFYRIVHFATAGFPHTLWPG*KVLDSG Trigger: CCCACTGTCTAGAACTTTCCAACCTGGCCAAAGTGT...GTGTGGGAACCCTGCTGTTGCAAAGTGTACTATTCTATAAAAGTTGTTTTTCAT 41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000009392.6 |
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| 3UTR CAA 90 bp | TGGAAAGTTCTAGACAGTGGGGGTGAGGGACAGAGGTCATCTTTATaGTGCTCCAAGCTTAAGGATCCTTTGTATAAAAATAATTCTTCA | + |
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Preference number: 2 (lower is better) Translates to: WKVLDSGGEGQRSSL*CSKLKDPLYKNNSS Trigger: TGAAGAATTATTTTTATACAAAGGATCCTTAAGCTTGGAGCACAATAAAGATGACCTCTGTCCCTCACCCCCACTGTCTAGAACTTTCCA 40% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000009392.6 |
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| 3UTR GCA 72 bp | GCTTCAGAAGAGGAAGAAGGGTGCAGCCAGGCATCTTaGCCTCAGGGCCCAACCGGTCCACACTTTGGCCAG | + |
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Preference number: 3 (lower is better) Translates to: ASEEEEGCSQAS*PQGPTGPHFGQ Trigger: CTGGCCAAAGTGTGGACCGGTTGGGCCCTGAGGGCAAGATGCCTGGCTGCACCCTTCTTCCTCTTCTGAAGC 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000009392.6 |
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| 3UTR CCA 72 bp | CCCTCAGGGCCCAACCGGTCCACACTTTGGCCAGGTTaGAAAGTTCTAGACAGTGGGGGTGAGGGACAGAGG | + |
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Preference number: 3 (lower is better) Translates to: PSGPNRSTLWPG*KVLDSGGEGQR Trigger: CCTCTGTCCCTCACCCCCACTGTCTAGAACTTTCCAACCTGGCCAAAGTGTGGACCGGTTGGGCCCTGAGGG 61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000009392.6 |
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| 3UTR CCA 72 bp | GGCATCTTGCCCTCAGGGCCCAACCGGTCCACACTTTaGCCAGGTTGGAAAGTTCTAGACAGTGGGGGTGAG | + |
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Preference number: 3 (lower is better) Translates to: GILPSGPNRSTL*PGWKVLDSGGE Trigger: CTCACCCCCACTGTCTAGAACTTTCCAACCTGGCCAAAGTGTGGACCGGTTGGGCCCTGAGGGCAAGATGCC 60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000009392.6 |
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| 3UTR CCA 72 bp | CAAGGTCCGGAAGATGGAAGATGTCATTCCGCGGCGTaGAGGCCGAGCAGAGGTCAGTCAGCACTTGGCATT | + |
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Preference number: 3 (lower is better) Translates to: QGPEDGRCHSAA*RPSRGQSALGI Trigger: AATGCCAAGTGCTGACTGACCTCTGCTCGGCCTCCACGCCGCGGAATGACATCTTCCATCTTCCGGACCTTG 58% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000009392.6 |
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| 3UTR CCA 72 bp | AAATTTCCAAGTCCTGATGCTGCAAGGTCCGGAAGATaGAAGATGTCATTCCGCGGCGTGGAGGCCGAGCAG | + |
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Preference number: 3 (lower is better) Translates to: KFPSPDAARSGR*KMSFRGVEAEQ Trigger: CTGCTCGGCCTCCACGCCGCGGAATGACATCTTCCATCTTCCGGACCTTGCAGCATCAGGACTTGGAAATTT 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000009392.6 |
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| 3UTR TCA 72 bp | ACTTTGGCCAGGTTGGAAAGTTCTAGACAGTGGGGGTaGGGGACAGAGGTCATCTTTATTGTGCTCCAAGCT | + |
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Preference number: 3 (lower is better) Translates to: TLARLESSRQWG*GTEVIFIVLQA Trigger: AGCTTGGAGCACAATAAAGATGACCTCTGTCCCTCACCCCCACTGTCTAGAACTTTCCAACCTGGCCAAAGT 50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000009392.6 |
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| CDS-3UTR GCA 90 bp | GATGCTGCAAGGTCCGGAAGATGGAAGATGTCATTCCGCGGCGTGGAGGCCGAGCACCGCGTCGTGCTCTaGGAGCAGCCGCTGCAGCGC | + |
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Preference number: 4 (lower is better) Translates to: DAARSGRWKMSFRGVEAEHRVVL*EQPLQR Trigger: GCGCTGCAGCGGCTGCTCGCAGAGCACGACGCGGTG...CTCGGCCTCCACGCCGCGGAATGACATCTTCCATCTTCCGGACCTTGCAGCATC 66% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000009392.6 |
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| CDS-3UTR GCA 90 bp | GATGCTGCAAGGTCCGGAAGATGGAAGATGTCATTCCGCGGCGTGGAGGCCGAGCCAGCTTTACGCGGTTaGGCTCGCGCTCATTGCGGC | + |
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Preference number: 4 (lower is better) Translates to: DAARSGRWKMSFRGVEAEPALRG*ARAHCG Trigger: GCCGCAATGAGCGCGAGCGCAACCGCGTAAAGCTGG...CTCGGCCTCCACGCCGCGGAATGACATCTTCCATCTTCCGGACCTTGCAGCATC 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000009392.6 |
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| 3UTR CAA 72 bp | GGCTTCAGAAGAGGAAGAAGGGTGCAGCCAGGCATCTaGCCCTCAGGGCCCAACCGGTCCACACTTTGGCCA | + |
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Preference number: 4 (lower is better) Translates to: GFRRGRRVQPGI*PSGPNRSTLWP Trigger: TGGCCAAAGTGTGGACCGGTTGGGCCCTGAGGGCAAGATGCCTGGCTGCACCCTTCTTCCTCTTCTGAAGCC 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000009392.6 |
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| CDS-3UTR CCA 90 bp | AACCGGTCCACACTTTGGCCAGGTTGGAAAGTTCTAGACAGTGGGGGTGAGGGAAGGACAGAGACGCGCTaGCAGGGGAGGCAGAGGGCT | + |
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Preference number: 4 (lower is better) Translates to: NRSTLWPGWKVLDSGGEGRTETR*QGRQRA Trigger: AGCCCTCTGCCTCCCCTGCCAGCGCGTCTCTGTCCT...TCCCTCACCCCCACTGTCTAGAACTTTCCAACCTGGCCAAAGTGTGGACCGGTT 60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000009392.6 |
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| CDS-3UTR GCA 90 bp | ACAGTGGGGGTGAGGGACAGAGGTCATCTTTATTGTGCTCCAAGCTTAAGGATCGCGTCGCTGGCCTCCTaGAGTCCTGGGACCCCGTAC | + |
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Preference number: 4 (lower is better) Translates to: TVGVRDRGHLYCAPSLRIASLAS*SPGTPY Trigger: GTACGGGGTCCCAGGACTGCAGGAGGCCAGCGACGC...GATCCTTAAGCTTGGAGCACAATAAAGATGACCTCTGTCCCTCACCCCCACTGT 58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000009392.6 |
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| CDS-3UTR GCA 90 bp | TGGCCAGGTTGGAAAGTTCTAGACAGTGGGGGTGAGGGACAGAGGTCATCTTTAGCCGTCCATCAAGCTTaGATTCAGCCCCTGGGCCCC | + |
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Preference number: 4 (lower is better) Translates to: WPGWKVLDSGGEGQRSSLAVHQA*IQPLGP Trigger: GGGGCCCAGGGGCTGAATGCAAGCTTGATGGACGGC...TAAAGATGACCTCTGTCCCTCACCCCCACTGTCTAGAACTTTCCAACCTGGCCA 57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000009392.6 |
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| CDS-3UTR CCA 90 bp | GTTCTAGACAGTGGGGGTGAGGGACAGAGGTCATCTTTATTGTGCTCCAAGCTTTGCTGCCGCAGCGCCTaGAAGCCCAAGTTTACCAGC | + |
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Preference number: 4 (lower is better) Translates to: VLDSGGEGQRSSLLCSKLCCRSA*KPKFTS Trigger: GCTGGTAAACTTGGGCTTCCAGGCGCTGCGGCAGCA...AAGCTTGGAGCACAATAAAGATGACCTCTGTCCCTCACCCCCACTGTCTAGAAC 54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000009392.6 |
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| CDS-3UTR GCA 90 bp | AAAAACAACTTTTATAGAATAGTACACTTTGCAACAGCAGGGTTCCCACACTGGCCGCCGTGCGGCACGTaGTGCCGCAGCGCCTGGAAG | + |
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Preference number: 4 (lower is better) Translates to: KNNFYRIVHFATAGFPHWPPCGT*CRSAWK Trigger: CTTCCAGGCGCTGCGGCAGCACGTGCCGCACGGCGG...CCAGTGTGGGAACCCTGCTGTTGCAAAGTGTACTATTCTATAAAAGTTGTTTTT 53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000009392.6 |
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| CDS-3UTR CCA 90 bp | GAGAAATTTCCAAGTCCTGATGCTGCAAGGTCCGGAAGATGGAAGATGTCATTCCAGCCGAGCTGCTGCTaGCCTCGGTTGCTCCAGATC | + |
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Preference number: 4 (lower is better) Translates to: EKFPSPDAARSGRWKMSFQPSCC*PRLLQI Trigger: GATCTGGAGCAACCGAGGCCAGCAGCAGCTCGGCTG...GAATGACATCTTCCATCTTCCGGACCTTGCAGCATCAGGACTTGGAAATTTCTC 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000009392.6 |
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| CDS-3UTR GCA 90 bp | TGGCCAGGTTGGAAAGTTCTAGACAGTGGGGGTGAGGGACAGAGGTCATCTTTATGCTACGAGTTCTGGTaGGGCACAGGAAAAGTGCTC | + |
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Preference number: 4 (lower is better) Translates to: WPGWKVLDSGGEGQRSSLCYEFW*GTGKVL Trigger: GAGCACTTTTCCTGTGCCGCACCAGAACTCGTAGCA...TAAAGATGACCTCTGTCCCTCACCCCCACTGTCTAGAACTTTCCAACCTGGCCA 52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000009392.6 |
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| CDS-3UTR GCA 90 bp | ATGAAAAACAACTTTTATAGAATAGTACACTTTGCAACAGCAGGGTTCCCACACCCGTGCGGCACGTGCTaGCGCAGCGCCTGGAAGCCC | + |
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Preference number: 4 (lower is better) Translates to: MKNNFYRIVHFATAGFPHPCGTC*RSAWKP Trigger: GGGCTTCCAGGCGCTGCGGCAGCACGTGCCGCACGG...GTGTGGGAACCCTGCTGTTGCAAAGTGTACTATTCTATAAAAGTTGTTTTTCAT 52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000009392.6 |
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| CDS-3UTR GCA 90 bp | AAAAACAACTTTTATAGAATAGTACACTTTGCAACAGCAGGGTTCCCACACTGGTTGTTGGCGCCGCCGTaGGGCACGTGCTGCCGCAGC | + |
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Preference number: 4 (lower is better) Translates to: KNNFYRIVHFATAGFPHWLLAPP*GTCCRS Trigger: GCTGCGGCAGCACGTGCCGCACGGCGGCGCCAACAA...CCAGTGTGGGAACCCTGCTGTTGCAAAGTGTACTATTCTATAAAAGTTGTTTTT 52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000009392.6 |
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| CDS-3UTR GCA 90 bp | ATGAAAAACAACTTTTATAGAATAGTACACTTTGCAACAGCAGGGTTCCCACACTGCGCTCGCGCTCATTaGGGCGTGCCACGGCAGCCG | + |
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Preference number: 4 (lower is better) Translates to: MKNNFYRIVHFATAGFPHCARAH*GVPRQP Trigger: CGGCTGCCGTGGCACGCCGCAATGAGCGCGAGCGCA...GTGTGGGAACCCTGCTGTTGCAAAGTGTACTATTCTATAAAAGTTGTTTTTCAT 51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000009392.6 |
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| CDS-3UTR CCA 90 bp | ATGAAAAACAACTTTTATAGAATAGTACACTTTGCAACAGCAGGGTTCCCACACTACTCAGCTTCTTGTTaGCGCCGCCGTGCGGCACGT | + |
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Preference number: 4 (lower is better) Translates to: MKNNFYRIVHFATAGFPHYSASC*RRRAAR Trigger: ACGTGCCGCACGGCGGCGCCAACAAGAAGCTGAGTA...GTGTGGGAACCCTGCTGTTGCAAAGTGTACTATTCTATAAAAGTTGTTTTTCAT 47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000009392.6 |
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| CDS-3UTR CCA 90 bp | AAAAACAACTTTTATAGAATAGTACACTTTGCAACAGCAGGGTTCCCACACTGGAGCCCCCTAACCAACTaGAAAAGTCAAGCAGCTCCT | + |
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Preference number: 4 (lower is better) Translates to: KNNFYRIVHFATAGFPHWSPLTN*KSQAAP Trigger: AGGAGCTGCTTGACTTTTCCAGTTGGTTAGGGGGCT...CCAGTGTGGGAACCCTGCTGTTGCAAAGTGTACTATTCTATAAAAGTTGTTTTT 43% GC, longest homopolymer 5 nt, total homopolymer stretches 18 nt. Matches the following 1 transcripts: ENSMUST00000009392.6 |
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| 3UTR CAA 72 bp | CTAGACAGTGGGGGTGAGGGACAGAGGTCATCTTTATaGTGCTCCAAGCTTAAGGATCCTTTGTATAAAAAT | + |
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Preference number: 4 (lower is better) Translates to: LDSGGEGQRSSL*CSKLKDPLYKN Trigger: ATTTTTATACAAAGGATCCTTAAGCTTGGAGCACAATAAAGATGACCTCTGTCCCTCACCCCCACTGTCTAG 43% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000009392.6 |
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| CDS GCA 90 bp | CGCGGTTGCGCTCGCGCTCATTGCGGCGTGCCACGGCAGCCGAGCTaGTGCTGGCCTCGGTTGCTCCAGATCGCCGCCGCCGGCTGCAGC | + |
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Preference number: 5 (lower is better) Translates to: RGCARAHCGVPRQPS*CWPRLLQIAAAGCS Trigger: GCTGCAGCCGGCGGCGGCGATCTGGAGCAACCGAGGCCAGCAGCAGCTCGGCTGCCGTGGCACGCCGCAATGAGCGCGAGCGCAACCGCG 74% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000009392.6 ENSMUST00000121862.3 |
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| CDS GCA 90 bp | GGTTGCGCTCGCGCTCATTGCGGCGTGCCACGGCAGCCGAGCTGCTaGTGGCCTCGGTTGCTCCAGATCGCCGCCGCCGGCTGCAGCGCA | + |
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Preference number: 5 (lower is better) Translates to: GCARAHCGVPRQPSC*WPRLLQIAAAGCSA Trigger: TGCGCTGCAGCCGGCGGCGGCGATCTGGAGCAACCGAGGCCAGCAGCAGCTCGGCTGCCGTGGCACGCCGCAATGAGCGCGAGCGCAACC 73% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000009392.6 ENSMUST00000121862.3 |
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| CDS CCA 90 bp | TGCGCTCGCGCTCATTGCGGCGTGCCACGGCAGCCGAGCTGCTGCTaGCCTCGGTTGCTCCAGATCGCCGCCGCCGGCTGCAGCGCAGCA | + |
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Preference number: 5 (lower is better) Translates to: CARAHCGVPRQPSCC*PRLLQIAAAGCSAA Trigger: TGCTGCGCTGCAGCCGGCGGCGGCGATCTGGAGCAACCGAGGCCAGCAGCAGCTCGGCTGCCGTGGCACGCCGCAATGAGCGCGAGCGCA 73% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000009392.6 ENSMUST00000121862.3 |
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| CDS GCA 90 bp | CCGAGCTGCTGCTGGCCTCGGTTGCTCCAGATCGCCGCCGCCGGCTaGAGCGCAGCAATTCCGGAGACGCTTGTCTCCGCCGAGCAGCGC | + |
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Preference number: 5 (lower is better) Translates to: PSCCWPRLLQIAAAG*SAAIPETLVSAEQR Trigger: GCGCTGCTCGGCGGAGACAAGCGTCTCCGGAATTGCTGCGCTGCAGCCGGCGGCGGCGATCTGGAGCAACCGAGGCCAGCAGCAGCTCGG 71% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000009392.6 ENSMUST00000121862.3 |
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| CDS GCA 90 bp | CCAGCGAGCGCGGCACGCACCGCGTCGTGCTCTGCGAGCAGCCGCTaGAGCGCACGAATGTACTCTACCGCGGAGCGCAGCGTCTCCACC | + |
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Preference number: 5 (lower is better) Translates to: PASAARTASCSASSR*SARMYSTAERSVST Trigger: GGTGGAGACGCTGCGCTCCGCGGTAGAGTACATTCGTGCGCTGCAGCGGCTGCTCGCAGAGCACGACGCGGTGCGTGCCGCGCTCGCTGG 71% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000009392.6 ENSMUST00000121862.3 |
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| CDS GCA 90 bp | CTCATTGCGGCGTGCCACGGCAGCCGAGCTGCTGCTGGCCTCGGTTaGTCCAGATCGCCGCCGCCGGCTGCAGCGCAGCAATTCCGGAGA | + |
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Preference number: 5 (lower is better) Translates to: LIAACHGSRAAAGLG*SRSPPPAAAQQFRR Trigger: TCTCCGGAATTGCTGCGCTGCAGCCGGCGGCGGCGATCTGGAGCAACCGAGGCCAGCAGCAGCTCGGCTGCCGTGGCACGCCGCAATGAG 70% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000009392.6 ENSMUST00000121862.3 |
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| CDS GCA 90 bp | GTAGAGGCGCAGGACAGAGACGCGCTGGCAGGGGAGGCAGAGGGCTaGGCGCACTCATCGGACGGCGGAGTAGCGGGTGTTAACAGCCCC | + |
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Preference number: 5 (lower is better) Translates to: VEAQDRDALAGEAEG*AHSSDGGVAGVNSP Trigger: GGGGCTGTTAACACCCGCTACTCCGCCGTCCGATGAGTGCGCGCAGCCCTCTGCCTCCCCTGCCAGCGCGTCTCTGTCCTGCGCCTCTAC 69% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000009392.6 ENSMUST00000121862.3 |
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| CDS GCA 90 bp | GCTGCCGCAGCGCCTGGAAGCCCAAGTTTACCAGCTTTACGCGGTTaGGCTCGCGCTCATTGCGGCGTGCCACGGCAGCCGAGCTGCTGC | + |
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Preference number: 5 (lower is better) Translates to: AAAAPGSPSLPALRG*ARAHCGVPRQPSCC Trigger: GCAGCAGCTCGGCTGCCGTGGCACGCCGCAATGAGCGCGAGCGCAACCGCGTAAAGCTGGTAAACTTGGGCTTCCAGGCGCTGCGGCAGC 68% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000009392.6 ENSMUST00000121862.3 |
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| CDS GCA 90 bp | CGAGGTGGGCATGAGTCTGGGCAGCGCGCCGCCGTCCATCAAGCTTaGATTCAGCCCCTGGGCCCCTGCTACGAGTTCTGGTGCGGCACA | + |
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Preference number: 5 (lower is better) Translates to: RGGHESGQRAAVHQA*IQPLGPCYEFWCGT Trigger: TGTGCCGCACCAGAACTCGTAGCAGGGGCCCAGGGGCTGAATGCAAGCTTGATGGACGGCGGCGCGCTGCCCAGACTCATGCCCACCTCG 67% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000009392.6 |
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| CDS-3UTR CAA 90 bp | AAGGTCCGGAAGATGGAAGATGTCATTCCGCGGCGTGGAGGCCGAGCAGAGGTCTTGCGCTCGCGCTCATaGCGGCGTGCCACGGCAGCC | + |
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Preference number: 5 (lower is better) Translates to: KVRKMEDVIPRRGGRAEVLRSRS*RRATAA Trigger: GGCTGCCGTGGCACGCCGCAATGAGCGCGAGCGCAA...GACCTCTGCTCGGCCTCCACGCCGCGGAATGACATCTTCCATCTTCCGGACCTT 66% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000009392.6 |
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| CDS-3UTR CAA 90 bp | GCCAAACATCAGCGTCAGTATAGGCTTCAGAAGAGGAAGAAGGGTGCAGCCAGGTTACTCAGCTTCTTGTaGGCGCCGCCGTGCGGCACG | + |
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Preference number: 5 (lower is better) Translates to: AKHQRQYRLQKRKKGAARLLSFL*APPCGT Trigger: CGTGCCGCACGGCGGCGCCAACAAGAAGCTGAGTAA...CCTGGCTGCACCCTTCTTCCTCTTCTGAAGCCTATACTGACGCTGATGTTTGGC 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000009392.6 |
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| CDS-3UTR CAA 90 bp | GCCAAACATCAGCGTCAGTATAGGCTTCAGAAGAGGAAGAAGGGTGCAGCCAGGACCTTACTCAGCTTCTaGTTGGCGCCGCCGTGCGGC | + |
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Preference number: 5 (lower is better) Translates to: AKHQRQYRLQKRKKGAARTLLSF*LAPPCG Trigger: GCCGCACGGCGGCGCCAACAAGAAGCTGAGTAAGGT...CCTGGCTGCACCCTTCTTCCTCTTCTGAAGCCTATACTGACGCTGATGTTTGGC 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000009392.6 |
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| CDS GCA 72 bp | CGCGCTCATTGCGGCGTGCCACGGCAGCCGAGCTGCTaGTGGCCTCGGTTGCTCCAGATCGCCGCCGCCGGC | + |
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Preference number: 6 (lower is better) Translates to: RAHCGVPRQPSC*WPRLLQIAAAG Trigger: GCCGGCGGCGGCGATCTGGAGCAACCGAGGCCAGCAGCAGCTCGGCTGCCGTGGCACGCCGCAATGAGCGCG 75% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000009392.6 ENSMUST00000121862.3 |
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| CDS GCA 72 bp | GCGTGCCACGGCAGCCGAGCTGCTGCTGGCCTCGGTTaGTCCAGATCGCCGCCGCCGGCTGCAGCGCAGCAA | + |
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Preference number: 6 (lower is better) Translates to: ACHGSRAAAGLG*SRSPPPAAAQQ Trigger: TTGCTGCGCTGCAGCCGGCGGCGGCGATCTGGAGCAACCGAGGCCAGCAGCAGCTCGGCTGCCGTGGCACGC 74% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000009392.6 ENSMUST00000121862.3 |
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| CDS CCA 72 bp | GCTCATTGCGGCGTGCCACGGCAGCCGAGCTGCTGCTaGCCTCGGTTGCTCCAGATCGCCGCCGCCGGCTGC | + |
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Preference number: 6 (lower is better) Translates to: AHCGVPRQPSCC*PRLLQIAAAGC Trigger: GCAGCCGGCGGCGGCGATCTGGAGCAACCGAGGCCAGCAGCAGCTCGGCTGCCGTGGCACGCCGCAATGAGC 74% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000009392.6 ENSMUST00000121862.3 |
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| CDS CAA 90 bp | GCTCATTGCGGCGTGCCACGGCAGCCGAGCTGCTGCTGGCCTCGGTaGCTCCAGATCGCCGCCGCCGGCTGCAGCGCAGCAATTCCGGAG | + |
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Preference number: 6 (lower is better) Translates to: AHCGVPRQPSCCWPR*LQIAAAGCSAAIPE Trigger: CTCCGGAATTGCTGCGCTGCAGCCGGCGGCGGCGATCTGGAGCAACCGAGGCCAGCAGCAGCTCGGCTGCCGTGGCACGCCGCAATGAGC 71% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000009392.6 ENSMUST00000121862.3 |
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| CDS GCA 72 bp | GCGGCACGCACCGCGTCGTGCTCTGCGAGCAGCCGCTaGAGCGCACGAATGTACTCTACCGCGGAGCGCAGC | + |
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Preference number: 6 (lower is better) Translates to: AARTASCSASSR*SARMYSTAERS Trigger: GCTGCGCTCCGCGGTAGAGTACATTCGTGCGCTGCAGCGGCTGCTCGCAGAGCACGACGCGGTGCGTGCCGC 71% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000009392.6 ENSMUST00000121862.3 |
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| CDS GCA 72 bp | GCTCCTGCTCCATCGGGCTTAGCTCTCCCTCGCAGCTaGTTTCCTCCGACGAGTAGGCGGAGCGCGGGGAGG | + |
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Preference number: 6 (lower is better) Translates to: APAPSGLALPRS*FPPTSRRSAGR Trigger: CCTCCCCGCGCTCCGCCTACTCGTCGGAGGAAAGCAGCTGCGAGGGAGAGCTAAGCCCGATGGAGCAGGAGC 68% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000009392.6 ENSMUST00000121862.3 |
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| CDS GCA 72 bp | GCGCCTGGAAGCCCAAGTTTACCAGCTTTACGCGGTTaGGCTCGCGCTCATTGCGGCGTGCCACGGCAGCCG | + |
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Preference number: 6 (lower is better) Translates to: APGSPSLPALRG*ARAHCGVPRQP Trigger: CGGCTGCCGTGGCACGCCGCAATGAGCGCGAGCGCAACCGCGTAAAGCTGGTAAACTTGGGCTTCCAGGCGC 67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000009392.6 ENSMUST00000121862.3 |
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| CDS GCA 72 bp | CATGAGTCTGGGCAGCGCGCCGCCGTCCATCAAGCTTaGATTCAGCCCCTGGGCCCCTGCTACGAGTTCTGG | + |
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Preference number: 6 (lower is better) Translates to: HESGQRAAVHQA*IQPLGPCYEFW Trigger: CCAGAACTCGTAGCAGGGGCCCAGGGGCTGAATGCAAGCTTGATGGACGGCGGCGCGCTGCCCAGACTCATG 65% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000009392.6 |
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