Pregenerated sensors for ASCL1 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000020052Ensembl transcript IDs: ENSMUST00000020243.10
Found 50 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR TCA 90 bp | ACTGAGGAAAGACATCAACCCAGTTTCAGGGGGCTAAGACAGCTCTaGCAGAGAGTGGGAGGTGAAGGCACTTGCACATGCGCGCTTCCA | + |
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Preference number: 1 (lower is better) Translates to: TEERHQPSFRGLRQL*QRVGGEGTCTCALP Trigger: TGGAAGCGCGCATGTGCAAGTGCCTTCACCTCCCACTCTCTGTCAGAGCTGTCTTAGCCCCCTGAAACTGGGTTGATGTCTTTCCTCAGT 54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000020243.10 |
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| 3UTR GCA 90 bp | TTCAGACACCAGTCACTCTTCTCGTGTCTGGAAATGATGTTGGAATaGAGAGACACTGTTGGAGCCCACCCCTGTTTGCTGAGAACATTG | + |
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Preference number: 1 (lower is better) Translates to: FRHQSLFSCLEMMLE*RDTVGAHPCLLRTL Trigger: CAATGTTCTCAGCAAACAGGGGTGGGCTCCAACAGTGTCTCTGCATTCCAACATCATTTCCAGACACGAGAAGAGTGACTGGTGTCTGAA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000020243.10 |
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| 3UTR-3UTR TCA 90 bp | ATGGTAGAAACTTCCAAAAGGCAACCTATGGGAACCAACGGGCTGCCACTTTGCACAGAGAGTGGGAGGTaGAGGCACTTGCACATGCGC | + |
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Preference number: 2 (lower is better) Translates to: MVETSKRQPMGTNGLPLCTESGR*RHLHMR Trigger: GCGCATGTGCAAGTGCCTTCACCTCCCACTCTCTGT...GCAAAGTGGCAGCCCGTTGGTTCCCATAGGTTGCCTTTTGGAAGTTTCTACCAT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000020243.10 |
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| 3UTR-3UTR TCA 90 bp | GGCAATGGTAGAAACTTCCAAAAGGCAACCTATGGGAACCAACGGGCTGCCACTTCGCTGGAATGGGGGTaGCTGAGGAAAGACATCAAC | + |
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Preference number: 2 (lower is better) Translates to: GNGRNFQKATYGNQRAATSLEWG*LRKDIN Trigger: GTTGATGTCTTTCCTCAGTCACCCCCATTCCAGCGA...AGTGGCAGCCCGTTGGTTCCCATAGGTTGCCTTTTGGAAGTTTCTACCATTGCC 52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000020243.10 |
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| 3UTR-3UTR GCA 90 bp | GTGTGTGTGTGTGTGACGCTCTTGCTCCAGGAAAGGAACCCATCTGTGATTCGGGATCTGCTGCCATCCTaGTTCCAAAGTCCATTCCCA | + |
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Preference number: 2 (lower is better) Translates to: VCVCVTLLLQERNPSVIRDLLPS*FQSPFP Trigger: TGGGAATGGACTTTGGAAGCAGGATGGCAGCAGATC...CCGAATCACAGATGGGTTCCTTTCCTGGAGCAAGAGCGTCACACACACACACAC 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000020243.10 |
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| 3UTR-3UTR GCA 90 bp | ATGGTAGAAACTTCCAAAAGGCAACCTATGGGAACCAACGGGCTGCCACTTTGCAGATGCAGGATCTGCTaGCATCCTGCTTCCAAAGTC | + |
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Preference number: 2 (lower is better) Translates to: MVETSKRQPMGTNGLPLCRCRIC*HPASKV Trigger: GACTTTGGAAGCAGGATGGCAGCAGATCCTGCATCT...GCAAAGTGGCAGCCCGTTGGTTCCCATAGGTTGCCTTTTGGAAGTTTCTACCAT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000020243.10 |
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| 3UTR-3UTR CCA 90 bp | AGAAACTTCCAAAAGGCAACCTATGGGAACCAACGGGCTGCCACTTTGCGTTTGGGTGCCCCTGTAGGTTaGCTGTCTGGTTTGTTTGTT | + |
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Preference number: 2 (lower is better) Translates to: RNFQKATYGNQRAATLRLGAPVG*LSGLFV Trigger: AACAAACAAACCAGACAGCCAACCTACAGGGGCACC...CAAACGCAAAGTGGCAGCCCGTTGGTTCCCATAGGTTGCCTTTTGGAAGTTTCT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000020243.10 |
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| 3UTR-3UTR GCA 90 bp | GGCAATGGTAGAAACTTCCAAAAGGCAACCTATGGGAACCAACGGGCTGCCACTGAAATGATGTTGGAATaGAGAGACACTGTTGGAGCC | + |
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Preference number: 2 (lower is better) Translates to: GNGRNFQKATYGNQRAATEMMLE*RDTVGA Trigger: GGCTCCAACAGTGTCTCTGCATTCCAACATCATTTC...AGTGGCAGCCCGTTGGTTCCCATAGGTTGCCTTTTGGAAGTTTCTACCATTGCC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000020243.10 |
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| 3UTR-3UTR TCA 90 bp | AGAAACTTCCAAAAGGCAACCTATGGGAACCAACGGGCTGCCACTTTGCGTTTGTCTCGTGTCTGGAAATaGTGTTGGAATGCAGAGACA | + |
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Preference number: 2 (lower is better) Translates to: RNFQKATYGNQRAATLRLSRVWK*CWNAET Trigger: TGTCTCTGCATTCCAACATCATTTCCAGACACGAGA...CAAACGCAAAGTGGCAGCCCGTTGGTTCCCATAGGTTGCCTTTTGGAAGTTTCT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000020243.10 |
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| 3UTR-3UTR TCA 90 bp | ATGGTAGAAACTTCCAAAAGGCAACCTATGGGAACCAACGGGCTGCCACTTTGCTTAACCACGTTTCTGTaGAGTAAGACACATTGGTGC | + |
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Preference number: 2 (lower is better) Translates to: MVETSKRQPMGTNGLPLCLTTFL*SKTHWC Trigger: GCACCAATGTGTCTTACTTCACAGAAACGTGGTTAA...GCAAAGTGGCAGCCCGTTGGTTCCCATAGGTTGCCTTTTGGAAGTTTCTACCAT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000020243.10 |
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| 3UTR-3UTR CCA 90 bp | GGCAATGGTAGAAACTTCCAAAAGGCAACCTATGGGAACCAACGGGCTGCCACTCTGAAGTCATTCTGGTaGCATTTAGATCTCACCTAT | + |
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Preference number: 2 (lower is better) Translates to: GNGRNFQKATYGNQRAATLKSFW*HLDLTY Trigger: ATAGGTGAGATCTAAATGCCACCAGAATGACTTCAG...AGTGGCAGCCCGTTGGTTCCCATAGGTTGCCTTTTGGAAGTTTCTACCATTGCC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000020243.10 |
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| 3UTR CCA 72 bp | ACAGAAGCAAAGACCGTGGGAGGGCGATGTGGGGTTTaGGGAGGAGGCCACCAGGAGAGGGAAAGGCTGTCC | + |
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Preference number: 3 (lower is better) Translates to: TEAKTVGGRCGV*GGGHQERERLS Trigger: GGACAGCCTTTCCCTCTCCTGGTGGCCTCCTCCCCAAACCCCACATCGCCCTCCCACGGTCTTTGCTTCTGT 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000020243.10 |
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| 3UTR TCA 72 bp | AGACATCAACCCAGTTTCAGGGGGCTAAGACAGCTCTaGCAGAGAGTGGGAGGTGAAGGCACTTGCACATGC | + |
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Preference number: 3 (lower is better) Translates to: RHQPSFRGLRQL*QRVGGEGTCTC Trigger: GCATGTGCAAGTGCCTTCACCTCCCACTCTCTGTCAGAGCTGTCTTAGCCCCCTGAAACTGGGTTGATGTCT 54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000020243.10 |
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| 3UTR GCA 72 bp | CGAGAAACACTAAAGATGCAGGATCTGCTGCCATCCTaGTTCCAAAGTCCATTCCCAGGAGAGCCTGGCAGG | + |
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Preference number: 3 (lower is better) Translates to: RETLKMQDLLPS*FQSPFPGEPGR Trigger: CCTGCCAGGCTCTCCTGGGAATGGACTTTGGAAGCAGGATGGCAGCAGATCCTGCATCTTTAGTGTTTCTCG 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000020243.10 |
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| 3UTR-3UTR CAA 90 bp | ATGGTAGAAACTTCCAAAAGGCAACCTATGGGAACCAACGGGCTGCCACTTTGCAATGCAGAGACACTGTaGGAGCCCACCCCTGTTTGC | + |
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Preference number: 3 (lower is better) Translates to: MVETSKRQPMGTNGLPLCNAETL*EPTPVC Trigger: GCAAACAGGGGTGGGCTCCAACAGTGTCTCTGCATT...GCAAAGTGGCAGCCCGTTGGTTCCCATAGGTTGCCTTTTGGAAGTTTCTACCAT 52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000020243.10 |
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| 3UTR-3UTR CAA 90 bp | ATAGTGTCTGTCTGTGTGTGTGTGTGTGTGTGTGACGCTCTTGCTCCAGGAAAGAGGTGCCCCTGTAGGTaGGCTGTCTGGTTTGTTTGT | + |
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Preference number: 3 (lower is better) Translates to: IVSVCVCVCVCDALAPGKRCPCR*AVWFVC Trigger: ACAAACAAACCAGACAGCCAACCTACAGGGGCACCT...CTTTCCTGGAGCAAGAGCGTCACACACACACACACACACACAGACAGACACTAT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000020243.10 |
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| 3UTR-3UTR CAA 90 bp | ATGGTAGAAACTTCCAAAAGGCAACCTATGGGAACCAACGGGCTGCCACTTTGCGGAGCCCACCCCTGTTaGCTGAGAACATTGCATCTT | + |
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Preference number: 3 (lower is better) Translates to: MVETSKRQPMGTNGLPLCGAHPC*LRTLHL Trigger: AAGATGCAATGTTCTCAGCAAACAGGGGTGGGCTCC...GCAAAGTGGCAGCCCGTTGGTTCCCATAGGTTGCCTTTTGGAAGTTTCTACCAT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000020243.10 |
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| 3UTR TCA 72 bp | GCTGAAGTCATTCTGGTGGCATTTAGATCTCACCTATaGGGAGAGTTCTTTCCAAAACCACACTGGGGATGG | + |
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Preference number: 3 (lower is better) Translates to: AEVILVAFRSHL*GEFFPKPHWGW Trigger: CCATCCCCAGTGTGGTTTTGGAAAGAACTCTCCTCATAGGTGAGATCTAAATGCCACCAGAATGACTTCAGC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000020243.10 |
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| CDS-3UTR TCA 90 bp | ACTAAAGATGCAGGATCTGCTGCCATCCTGCTTCCAAAGTCCATTCCCAGGAGACTTGTGACCGCCCCCTaGGGGCTGGCTGTCGGCCAC | + |
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Preference number: 4 (lower is better) Translates to: TKDAGSAAILLPKSIPRRLVTAP*GLAVGH Trigger: GTGGCCGACAGCCAGCCCTCAGGGGGCGGTCACAAG...TCTCCTGGGAATGGACTTTGGAAGCAGGATGGCAGCAGATCCTGCATCTTTAGT 59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000020243.10 |
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| CDS-3UTR TCA 90 bp | ATGGTAGAAACTTCCAAAAGGCAACCTATGGGAACCAACGGGCTGCCACTTTGCGACAGGACGCCCGCCTaGAAGGCAGCGCTCACCGCG | + |
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Preference number: 4 (lower is better) Translates to: MVETSKRQPMGTNGLPLCDRTPA*KAALTA Trigger: CGCGGTGAGCGCTGCCTTTCAGGCGGGCGTCCTGTC...GCAAAGTGGCAGCCCGTTGGTTCCCATAGGTTGCCTTTTGGAAGTTTCTACCAT 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000020243.10 |
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| CDS-3UTR TCA 90 bp | TTGACGTCGTTGGCGAGAAACACTAAAGATGCAGGATCTGCTGCCATCCTGCTTTTGGCCGCTGACTTGTaGCCGCCCCCTGAGGGCTGG | + |
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Preference number: 4 (lower is better) Translates to: LTSLARNTKDAGSAAILLLAADL*PPPEGW Trigger: CCAGCCCTCAGGGGGCGGTCACAAGTCAGCGGCCAA...AAGCAGGATGGCAGCAGATCCTGCATCTTTAGTGTTTCTCGCCAACGACGTCAA 58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000020243.10 |
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| CDS-3UTR GCA 90 bp | ATAGTGTCTGTCTGTGTGTGTGTGTGTGTGTGTGACGCTCTTGCTCCAGGAAAGGCGCTCACCGCGTCGTaGTCGTCCAGCAGCTGCTGC | + |
|
Preference number: 4 (lower is better) Translates to: IVSVCVCVCVCDALAPGKALTAS*SSSSCC Trigger: GCAGCAGCTGCTGGACGAGCACGACGCGGTGAGCGC...CTTTCCTGGAGCAAGAGCGTCACACACACACACACACACACAGACAGACACTAT 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000020243.10 |
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| CDS-3UTR CCA 90 bp | TATGGGAACCAACGGGCTGCCACTTTGCGTTTGGACAGTAGCTGCATAAACTTTTGTTGGCCGCGCCGTTaGGGACATGCTCCCGGAGGG | + |
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Preference number: 4 (lower is better) Translates to: YGNQRAATLRLDSSCINFCWPRR*GHAPGG Trigger: CCCTCCGGGAGCATGTCCCCAACGGCGCGGCCAACA...AAAGTTTATGCAGCTACTGTCCAAACGCAAAGTGGCAGCCCGTTGGTTCCCATA 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000020243.10 |
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| CDS-3UTR CCA 90 bp | ATAGTGTCTGTCTGTGTGTGTGTGTGTGTGTGTGACGCTCTTGCTCCAGGAAAGAGTTGGGGGAGATGGTaGGCGACAGGACGCCCGCCT | + |
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Preference number: 4 (lower is better) Translates to: IVSVCVCVCVCDALAPGKSWGRW*ATGRPP Trigger: AGGCGGGCGTCCTGTCGCCCACCATCTCCCCCAACT...CTTTCCTGGAGCAAGAGCGTCACACACACACACACACACACAGACAGACACTAT 57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000020243.10 |
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| CDS-3UTR GCA 90 bp | TTGACGTCGTTGGCGAGAAACACTAAAGATGCAGGATCTGCTGCCATCCTGCTTGCGCCGTTGGGGACATaGTCCCGGAGGGTGGCAAAA | + |
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Preference number: 4 (lower is better) Translates to: LTSLARNTKDAGSAAILLAPLGT*SRRVAK Trigger: TTTTGCCACCCTCCGGGAGCATGTCCCCAACGGCGC...AAGCAGGATGGCAGCAGATCCTGCATCTTTAGTGTTTCTCGCCAACGACGTCAA 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000020243.10 |
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| CDS-3UTR CCA 90 bp | GTTCAGACACCAGTCACTCTTCTCGTGTCTGGAAATGATGTTGGAATGCAGAGAGGCCGGCTGCTGCTGTaGCAGGCTGTAGCCGAAGCC | + |
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Preference number: 4 (lower is better) Translates to: VQTPVTLLVSGNDVGMQRGRLLL*QAVAEA Trigger: GGCTTCGGCTACAGCCTGCCACAGCAGCAGCCGGCC...TCTCTGCATTCCAACATCATTTCCAGACACGAGAAGAGTGACTGGTGTCTGAAC 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000020243.10 |
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| CDS-3UTR CCA 90 bp | TTGACGTCGTTGGCGAGAAACACTAAAGATGCAGGATCTGCTGCCATCCTGCTTAGTAGTTGGGGGAGATaGTGGGCGACAGGACGCCCG | + |
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Preference number: 4 (lower is better) Translates to: LTSLARNTKDAGSAAILLSSWGR*WATGRP Trigger: CGGGCGTCCTGTCGCCCACCATCTCCCCCAACTACT...AAGCAGGATGGCAGCAGATCCTGCATCTTTAGTGTTTCTCGCCAACGACGTCAA 56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000020243.10 |
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| 3UTR CAA 72 bp | GACACTGTTGGAGCCCACCCCTGTTTGCTGAGAACATaGCATCTTAGTGAAGGTGCCCCTGTAGGTTGGCTG | + |
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Preference number: 4 (lower is better) Translates to: DTVGAHPCLLRT*HLSEGAPVGWL Trigger: CAGCCAACCTACAGGGGCACCTTCACTAAGATGCAATGTTCTCAGCAAACAGGGGTGGGCTCCAACAGTGTC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000020243.10 |
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| 3UTR CAA 72 bp | CCACCAGGAGAGGGAAAGGCTGTCCGAGAACTGACGTaGCTTCAATGGAGGCAAATGTCCATAGATCGCTGG | + |
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Preference number: 4 (lower is better) Translates to: PPGEGKAVRELT*LQWRQMSIDRW Trigger: CCAGCGATCTATGGACATTTGCCTCCATTGAAGCAACGTCAGTTCTCGGACAGCCTTTCCCTCTCCTGGTGG 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000020243.10 |
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| 3UTR CAA 72 bp | TGTCTGTCTGTGTGTGTGTGTGTGTGTGTGACGCTCTaGCTCCAGGAAAGGAACCCATCTGTGATTCGGGCT | + |
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Preference number: 4 (lower is better) Translates to: CLSVCVCVCVTL*LQERNPSVIRA Trigger: AGCCCGAATCACAGATGGGTTCCTTTCCTGGAGCAAGAGCGTCACACACACACACACACACACAGACAGACA 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000020243.10 |
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| CDS-3UTR CCA 90 bp | GTTCAGACACCAGTCACTCTTCTCGTGTCTGGAAATGATGTTGGAATGCAGAGATGCTCATCTTCTTGTTaGCCGCGCCGTTGGGGACAT | + |
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Preference number: 4 (lower is better) Translates to: VQTPVTLLVSGNDVGMQRCSSSC*PRRWGH Trigger: ATGTCCCCAACGGCGCGGCCAACAAGAAGATGAGCA...TCTCTGCATTCCAACATCATTTCCAGACACGAGAAGAGTGACTGGTGTCTGAAC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000020243.10 |
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| 3UTR CAA 72 bp | CAAAAGGCAACCTATGGGAACCAACGGGCTGCCACTTaGCGTTTGGACAGTAGCTGCATAAACTTTTGTTCT | + |
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Preference number: 4 (lower is better) Translates to: QKATYGNQRAAT*RLDSSCINFCS Trigger: AGAACAAAAGTTTATGCAGCTACTGTCCAAACGCAAAGTGGCAGCCCGTTGGTTCCCATAGGTTGCCTTTTG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000020243.10 |
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| CDS CCA 90 bp | GCGCTCGCGCTCGTTGCGGCGCGCCACGGCGGCCGGCTGCTGCTGTaGCAGGCTGTAGCCGAAGCCGCTGAAGTTGAGCCGGCGTTTGCA | + |
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Preference number: 5 (lower is better) Translates to: ALALVAARHGGRLLL*QAVAEAAEVEPAFA Trigger: TGCAAACGCCGGCTCAACTTCAGCGGCTTCGGCTACAGCCTGCCACAGCAGCAGCCGGCCGCCGTGGCGCGCCGCAACGAGCGCGAGCGC 72% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000020243.10 |
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| CDS TCA 90 bp | GGAGAGGACGAGCGCTGGCGCTTGACCTGCTTGGCCGCTGACTTGTaGCCGCCCCCTGAGGGCTGGCTGTCGGCCACCGGGCTCAGCTGC | + |
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Preference number: 5 (lower is better) Translates to: GEDERWRLTCLAADL*PPPEGWLSATGLSC Trigger: GCAGCTGAGCCCGGTGGCCGACAGCCAGCCCTCAGGGGGCGGTCACAAGTCAGCGGCCAAGCAGGTCAAGCGCCAGCGCTCGTCCTCTCC 71% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000020243.10 |
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| CDS TCA 90 bp | GGCGTTTGCAGCGCATCAGTTCCGGAGAGGACGAGCGCTGGCGCTTaGCCTGCTTGGCCGCTGACTTGTGACCGCCCCCTGAGGGCTGGC | + |
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Preference number: 5 (lower is better) Translates to: GVCSASVPERTSAGA*PAWPLTCDRPLRAG Trigger: GCCAGCCCTCAGGGGGCGGTCACAAGTCAGCGGCCAAGCAGGTCAAGCGCCAGCGCTCGTCCTCTCCGGAACTGATGCGCTGCAAACGCC 68% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000020243.10 |
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| CDS-3UTR CAA 90 bp | TATGGGAACCAACGGGCTGCCACTTTGCGTTTGGACAGTAGCTGCATAAACTTTCGGCGCCTGCGGCTGTaGCTGCTGCGCGCTCTGAGC | + |
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Preference number: 5 (lower is better) Translates to: YGNQRAATLRLDSSCINFRRLRL*LLRALS Trigger: GCTCAGAGCGCGCAGCAGCAACAGCCGCAGGCGCCG...AAAGTTTATGCAGCTACTGTCCAAACGCAAAGTGGCAGCCCGTTGGTTCCCATA 59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000020243.10 |
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| CDS-3UTR CAA 90 bp | GTGTGTGTGTGTGTGACGCTCTTGCTCCAGGAAAGGAACCCATCTGTGATTCGGCCGAAGCCGCTGAAGTaGAGCCGGCGTTTGCAGCGC | + |
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Preference number: 5 (lower is better) Translates to: VCVCVTLLLQERNPSVIRPKPLK*SRRLQR Trigger: GCGCTGCAAACGCCGGCTCAACTTCAGCGGCTTCGG...CCGAATCACAGATGGGTTCCTTTCCTGGAGCAAGAGCGTCACACACACACACAC 59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000020243.10 |
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| CDS-3UTR CAA 90 bp | ACTAAAGATGCAGGATCTGCTGCCATCCTGCTTCCAAAGTCCATTCCCAGGAGATTGTTGGCCGCGCCGTaGGGGACATGCTCCCGGAGG | + |
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Preference number: 5 (lower is better) Translates to: TKDAGSAAILLPKSIPRRLLAAP*GTCSRR Trigger: CCTCCGGGAGCATGTCCCCAACGGCGCGGCCAACAA...TCTCCTGGGAATGGACTTTGGAAGCAGGATGGCAGCAGATCCTGCATCTTTAGT 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000020243.10 |
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| CDS-3UTR CAA 90 bp | ACTGTTGGAGCCCACCCCTGTTTGCTGAGAACATTGCATCTTAGTGAAGGTGCCAAGTTGAGCCGGCGTTaGCAGCGCATCAGTTCCGGA | + |
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Preference number: 5 (lower is better) Translates to: TVGAHPCLLRTLHLSEGAKLSRR*QRISSG Trigger: TCCGGAACTGATGCGCTGCAAACGCCGGCTCAACTT...GGCACCTTCACTAAGATGCAATGTTCTCAGCAAACAGGGGTGGGCTCCAACAGT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000020243.10 |
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| CDS-3UTR CAA 90 bp | ATAGTGTCTGTCTGTGTGTGTGTGTGTGTGTGTGACGCTCTTGCTCCAGGAAAGTTGCTCATCTTCTTGTaGGCCGCGCCGTTGGGGACA | + |
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Preference number: 5 (lower is better) Translates to: IVSVCVCVCVCDALAPGKLLIFL*AAPLGT Trigger: TGTCCCCAACGGCGCGGCCAACAAGAAGATGAGCAA...CTTTCCTGGAGCAAGAGCGTCACACACACACACACACACACAGACAGACACTAT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000020243.10 |
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| CDS-3UTR CAA 90 bp | ACTAAAGATGCAGGATCTGCTGCCATCCTGCTTCCAAAGTCCATTCCCAGGAGAGTGGCAAAACCCAGGTaGACCAACTTGACCCGGTTG | + |
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Preference number: 5 (lower is better) Translates to: TKDAGSAAILLPKSIPRRVAKPR*TNLTRL Trigger: CAACCGGGTCAAGTTGGTCAACCTGGGTTTTGCCAC...TCTCCTGGGAATGGACTTTGGAAGCAGGATGGCAGCAGATCCTGCATCTTTAGT 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000020243.10 |
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| CDS-3UTR CAA 90 bp | AGAACATTGCATCTTAGTGAAGGTGCCCCTGTAGGTTGGCTGTCTGGTTTGTTTACCTTGCTCATCTTCTaGTTGGCCGCGCCGTTGGGG | + |
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Preference number: 5 (lower is better) Translates to: RTLHLSEGAPVGWLSGLFTLLIF*LAAPLG Trigger: CCCCAACGGCGCGGCCAACAAGAAGATGAGCAAGGT...AAACAAACCAGACAGCCAACCTACAGGGGCACCTTCACTAAGATGCAATGTTCT 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000020243.10 |
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| CDS-3UTR CAA 90 bp | GTTCAGACACCAGTCACTCTTCTCGTGTCTGGAAATGATGTTGGAATGCAGAGAAAAGTCCAGCAGCTCTaGTTCCTCTGGGCTAAGAGG | + |
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Preference number: 5 (lower is better) Translates to: VQTPVTLLVSGNDVGMQRKVQQL*FLWAKR Trigger: CCTCTTAGCCCAGAGGAACAAGAGCTGCTGGACTTT...TCTCTGCATTCCAACATCATTTCCAGACACGAGAAGAGTGACTGGTGTCTGAAC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000020243.10 |
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| CDS GCA 72 bp | CTGCTGCGCGCTCTGAGCTGCCGCGGCCGCCGCCGCTaGCGCCGCCGCCGCGGTCGCAAAGAAGCAGGCTGC | + |
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Preference number: 6 (lower is better) Translates to: LLRALSCRGRRR*RRRRGRKEAGC Trigger: GCAGCCTGCTTCTTTGCGACCGCGGCGGCGGCGGCAGCGGCGGCGGCCGCGGCAGCTCAGAGCGCGCAGCAG 79% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000020243.10 |
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| CDS GCA 72 bp | GGCTGGCTGTCGGCCACCGGGCTCAGCTGCGGCGCCTaGTGCGGCGGCGCCTGCGGCTGTTGCTGCTGCGCG | + |
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Preference number: 6 (lower is better) Translates to: GWLSATGLSCGA*CGGACGCCCCA Trigger: CGCGCAGCAGCAACAGCCGCAGGCGCCGCCGCAGCAGGCGCCGCAGCTGAGCCCGGTGGCCGACAGCCAGCC 79% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000020243.10 |
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| CDS TCA 72 bp | GAGCGCTGGCGCTTGACCTGCTTGGCCGCTGACTTGTaGCCGCCCCCTGAGGGCTGGCTGTCGGCCACCGGG | + |
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Preference number: 6 (lower is better) Translates to: ERWRLTCLAADL*PPPEGWLSATG Trigger: CCCGGTGGCCGACAGCCAGCCCTCAGGGGGCGGTCACAAGTCAGCGGCCAAGCAGGTCAAGCGCCAGCGCTC 72% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000020243.10 |
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| CDS CCA 72 bp | CTCGTTGCGGCGCGCCACGGCGGCCGGCTGCTGCTGTaGCAGGCTGTAGCCGAAGCCGCTGAAGTTGAGCCG | + |
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Preference number: 6 (lower is better) Translates to: LVAARHGGRLLL*QAVAEAAEVEP Trigger: CGGCTCAACTTCAGCGGCTTCGGCTACAGCCTGCCACAGCAGCAGCCGGCCGCCGTGGCGCGCCGCAACGAG 72% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000020243.10 |
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| CDS TCA 72 bp | AGCGCATCAGTTCCGGAGAGGACGAGCGCTGGCGCTTaGCCTGCTTGGCCGCTGACTTGTGACCGCCCCCTG | + |
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Preference number: 6 (lower is better) Translates to: SASVPERTSAGA*PAWPLTCDRPL Trigger: CAGGGGGCGGTCACAAGTCAGCGGCCAAGCAGGTCAAGCGCCAGCGCTCGTCCTCTCCGGAACTGATGCGCT 67% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000020243.10 |
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| CDS GCA 72 bp | TTGCTCATCTTCTTGTTGGCCGCGCCGTTGGGGACATaGTCCCGGAGGGTGGCAAAACCCAGGTTGACCAAC | + |
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Preference number: 6 (lower is better) Translates to: LLIFLLAAPLGT*SRRVAKPRLTN Trigger: GTTGGTCAACCTGGGTTTTGCCACCCTCCGGGAGCATGTCCCCAACGGCGCGGCCAACAAGAAGATGAGCAA 60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000020243.10 |
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| CDS CCA 72 bp | GAACCAGTTGGTAAAGTCCAGCAGCTCTTGTTCCTCTaGGCTAAGAGGGTCGTAGGATCCCTCGTCGGAGGA | + |
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Preference number: 6 (lower is better) Translates to: EPVGKVQQLLFL*AKRVVGSLVGG Trigger: TCCTCCGACGAGGGATCCTACGACCCTCTTAGCCCAGAGGAACAAGAGCTGCTGGACTTTACCAACTGGTTC 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000020243.10 |
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