RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for ASCC3 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000038774

Ensembl transcript IDs: ENSMUST00000035606.10, ENSMUST00000219226.2, ENSMUST00000220355.2

Found 247 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR TCA 90 bp TCAGACATACCAGAAGTGGGCATCGGATTCCATTATAGATGGTTGTaGACCACCATGAGGTTGCTGGGAACTGAACTCAGGACCTCTGGA +
Preference number: 1 (lower is better)
Translates to: SDIPEVGIGFHYRWL*TTMRLLGTELRTSG
Trigger: TCCAGAGGTCCTGAGTTCAGTTCCCAGCAACCTCATGGTGGTTCACAACCATCTATAATGGAATCCGATGCCCACTTCTGGTATGTCTGA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000219226.2
3UTR TCA 90 bp GAGAGCTCACTATCAGTGACAGCGAAGAAGGTGAACATCCCATGTTaGCTATTGTGTCTAAAACGTTATTCTGGGCTGAGCAGTGCTAAG +
Preference number: 1 (lower is better)
Translates to: ESSLSVTAKKVNIPC*LLCLKRYSGLSSAK
Trigger: CTTAGCACTGCTCAGCCCAGAATAACGTTTTAGACACAATAGTCAACATGGGATGTTCACCTTCTTCGCTGTCACTGATAGTGAGCTCTC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000219226.2
3UTR CCA 90 bp CTCATAAATCTGTTACAAAAGGCAGCAGTTTCTAAAAGGCCTCTGTaGCTAACGTTGCTGGAATCATCACTGCAGCCGCTGTCAATTTCC +
Preference number: 1 (lower is better)
Translates to: LINLLQKAAVSKRPL*LTLLESSLQPLSIS
Trigger: GGAAATTGACAGCGGCTGCAGTGATGATTCCAGCAACGTTAGCCACAGAGGCCTTTTAGAAACTGCTGCCTTTTGTAACAGATTTATGAG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000035606.10
3UTR-3UTR CCA 90 bp CGGTACCTCGTCCTGAAGTTCATCGCCGCTTTTAGCAGAAGCAAGCATGTCATACACTCTATCGTTACATaGGTTTTCTGCCATCTGGAC +
Preference number: 2 (lower is better)
Translates to: RYLVLKFIAAFSRSKHVIHSIVT*VFCHLD
Trigger: GTCCAGATGGCAGAAAACCCATGTAACGATAGAGTG...TATGACATGCTTGCTTCTGCTAAAAGCGGCGATGAACTTCAGGACGAGGTACCG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000219226.2
3UTR-3UTR GCA 90 bp AAACTCATAAATCTGTTACAAAAGGCAGCAGTTTCTAAAAGGCCTCTGTGGCTATGCTGGAATCATCACTaGAGCCGCTGTCAATTTCCT +
Preference number: 2 (lower is better)
Translates to: KLINLLQKAAVSKRPLWLCWNHH*SRCQFP
Trigger: AGGAAATTGACAGCGGCTGCAGTGATGATTCCAGCA...TAGCCACAGAGGCCTTTTAGAAACTGCTGCCTTTTGTAACAGATTTATGAGTTT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000035606.10
3UTR CAA 90 bp AGCAAAGATCTTCAACTCTTGCTGCTTCAGTCATTTCCTTTAACGTaGCGTTTAAGTACTTCTCAACTTCACACCACAATAGGGAGCCAT +
Preference number: 2 (lower is better)
Translates to: SKDLQLLLLQSFPLT*RLSTSQLHTTIGSH
Trigger: ATGGCTCCCTATTGTGGTGTGAAGTTGAGAAGTACTTAAACGCAACGTTAAAGGAAATGACTGAAGCAGCAAGAGTTGAAGATCTTTGCT
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000219226.2
3UTR CAA 90 bp CAGAAGCAAGCATGTCATATAGAGTACAGCAAAGATCTTCAACTCTaGCTGCTTCAGTCATTTCCTTTAACGTTGCGTTTAAGTACTTCT +
Preference number: 2 (lower is better)
Translates to: QKQACHIEYSKDLQL*LLQSFPLTLRLSTS
Trigger: AGAAGTACTTAAACGCAACGTTAAAGGAAATGACTGAAGCAGCAAGAGTTGAAGATCTTTGCTGTACTCTATATGACATGCTTGCTTCTG
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000219226.2
3UTR-3UTR TCA 90 bp TGGAAGGAGCACTCTATATACTTTATTTCCACCAGTTACAGTGTTCACATTTTCTTCGACTTGTTCACATaGCTGAACAGTCAAGACTCT +
Preference number: 2 (lower is better)
Translates to: WKEHSIYFISTSYSVHIFFDLFT*LNSQDS
Trigger: AGAGTCTTGACTGTTCAGTCATGTGAACAAGTCGAA...GAAAATGTGAACACTGTAACTGGTGGAAATAAAGTATATAGAGTGCTCCTTCCA
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000035606.10
3UTR-3UTR CCA 90 bp CACCACAATGTAATTTTCCTTAGAAAAAGGAGTAGCTGGTATTCATGTAAACAGTCTAAAAGGCCTCTGTaGCTAACGTTGCTGGAATCA +
Preference number: 2 (lower is better)
Translates to: HHNVIFLRKRSSWYSCKQSKRPL*LTLLES
Trigger: TGATTCCAGCAACGTTAGCCACAGAGGCCTTTTAGA...CTGTTTACATGAATACCAGCTACTCCTTTTTCTAAGGAAAATTACATTGTGGTG
39% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000035606.10
3UTR-3UTR TCA 90 bp GAACAGGATGCACTTTATACAGGTAGCAAATCACCAAAGAGTAAACTTAACAAATCAGTGTGTGGTCTTTaGAAAATCATCATTGATCTC +
Preference number: 2 (lower is better)
Translates to: EQDALYTGSKSPKSKLNKSVCGL*KIIIDL
Trigger: GAGATCAATGATGATTTTTCAAAGACCACACACTGA...TTTGTTAAGTTTACTCTTTGGTGATTTGCTACCTGTATAAAGTGCATCCTGTTC
36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000035606.10
3UTR TCA 72 bp CCAGAAGTGGGCATCGGATTCCATTATAGATGGTTGTaGACCACCATGAGGTTGCTGGGAACTGAACTCAGG +
Preference number: 3 (lower is better)
Translates to: PEVGIGFHYRWL*TTMRLLGTELR
Trigger: CCTGAGTTCAGTTCCCAGCAACCTCATGGTGGTTCACAACCATCTATAATGGAATCCGATGCCCACTTCTGG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000219226.2
3UTR CCA 72 bp CTGTTACAAAAGGCAGCAGTTTCTAAAAGGCCTCTGTaGCTAACGTTGCTGGAATCATCACTGCAGCCGCTG +
Preference number: 3 (lower is better)
Translates to: LLQKAAVSKRPL*LTLLESSLQPL
Trigger: CAGCGGCTGCAGTGATGATTCCAGCAACGTTAGCCACAGAGGCCTTTTAGAAACTGCTGCCTTTTGTAACAG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000035606.10
3UTR TCA 72 bp GCATCGGATTCCATTATAGATGGTTGTGAACCACCATaGGGTTGCTGGGAACTGAACTCAGGACCTCTGGAA +
Preference number: 3 (lower is better)
Translates to: ASDSIIDGCEPP*GCWELNSGPLE
Trigger: TTCCAGAGGTCCTGAGTTCAGTTCCCAGCAACCTCATGGTGGTTCACAACCATCTATAATGGAATCCGATGC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000219226.2
3UTR-3UTR CAA 90 bp CGGTACCTCGTCCTGAAGTTCATCGCCGCTTTTAGCAGAAGCAAGCATGTCATAAAAGATCTTCAACTCTaGCTGCTTCAGTCATTTCCT +
Preference number: 3 (lower is better)
Translates to: RYLVLKFIAAFSRSKHVIKDLQL*LLQSFP
Trigger: AGGAAATGACTGAAGCAGCAAGAGTTGAAGATCTTT...TATGACATGCTTGCTTCTGCTAAAAGCGGCGATGAACTTCAGGACGAGGTACCG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000219226.2
3UTR TCA 72 bp CTATCAGTGACAGCGAAGAAGGTGAACATCCCATGTTaGCTATTGTGTCTAAAACGTTATTCTGGGCTGAGC +
Preference number: 3 (lower is better)
Translates to: LSVTAKKVNIPC*LLCLKRYSGLS
Trigger: GCTCAGCCCAGAATAACGTTTTAGACACAATAGTCAACATGGGATGTTCACCTTCTTCGCTGTCACTGATAG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000219226.2
3UTR-3UTR CAA 90 bp GACAGCGAAGAAGGTGAACATCCCATGTTGACTATTGTGTCTAAAACGTTATTCGGGATTCACCATTTATaGGTAATTCATCAAAGTGGT +
Preference number: 3 (lower is better)
Translates to: DSEEGEHPMLTIVSKTLFGIHHL*VIHQSG
Trigger: ACCACTTTGATGAATTACCAATAAATGGTGAATCCC...GAATAACGTTTTAGACACAATAGTCAACATGGGATGTTCACCTTCTTCGCTGTC
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000219226.2
CDS-3UTR TCA 90 bp GGAATCATCACTGCAGCCGCTGTCAATTTCCTAGTTGGTTTGAGGTTTGAAGTTGCAGCATGGCTCGGCTaGGATGCGCTTGAAGCAAGA +
Preference number: 4 (lower is better)
Translates to: GIITAAAVNFLVGLRFEVAAWLG*DALEAR
Trigger: TCTTGCTTCAAGCGCATCTCAGCCGAGCCATGCTGC...AACTTCAAACCTCAAACCAACTAGGAAATTGACAGCGGCTGCAGTGATGATTCC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000035606.10
3UTR CAA 72 bp AAGGCAGCAGTTTCTAAAAGGCCTCTGTGGCTAACGTaGCTGGAATCATCACTGCAGCCGCTGTCAATTTCC +
Preference number: 4 (lower is better)
Translates to: KAAVSKRPLWLT*LESSLQPLSIS
Trigger: GGAAATTGACAGCGGCTGCAGTGATGATTCCAGCAACGTTAGCCACAGAGGCCTTTTAGAAACTGCTGCCTT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000035606.10
CDS-3UTR TCA 90 bp CGTTGCTGGAATCATCACTGCAGCCGCTGTCAATTTCCTAGTTGGTTTGAGGTTCCATCTCTCCTCGGCTaGTGTAGGTTTGAAGTAGGA +
Preference number: 4 (lower is better)
Translates to: RCWNHHCSRCQFPSWFEVPSLLG*CRFEVG
Trigger: TCCTACTTCAAACCTACATCAGCCGAGGAGAGATGG...AACCTCAAACCAACTAGGAAATTGACAGCGGCTGCAGTGATGATTCCAGCAACG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000035606.10
CDS-3UTR CCA 90 bp CGTTGCTGGAATCATCACTGCAGCCGCTGTCAATTTCCTAGTTGGTTTGAGGTTCACCCCAGGCTAATGTaGCTGTACAGACTAGGACTT +
Preference number: 4 (lower is better)
Translates to: RCWNHHCSRCQFPSWFEVHPRLM*LYRLGL
Trigger: AAGTCCTAGTCTGTACAGCCACATTAGCCTGGGGTG...AACCTCAAACCAACTAGGAAATTGACAGCGGCTGCAGTGATGATTCCAGCAACG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000035606.10
CDS-3UTR TCA 90 bp GTTGCTGGAATCATCACTGCAGCCGCTGTCAATTTCCTAGTTGGTTTGAGGTTTGTGGCTTCCATTTCCTaGAAAGGTGAAGGTGGTGCT +
Preference number: 4 (lower is better)
Translates to: VAGIITAAAVNFLVGLRFVASIS*KGEGGA
Trigger: AGCACCACCTTCACCTTTTCAGGAAATGGAAGCCAC...AAACCTCAAACCAACTAGGAAATTGACAGCGGCTGCAGTGATGATTCCAGCAAC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000035606.10
CDS-3UTR GCA 90 bp CGTTGCTGGAATCATCACTGCAGCCGCTGTCAATTTCCTAGTTGGTTTGAGGTTTCTTCATGCAGCAAGTaGACCTCGTCAAGAATCAGG +
Preference number: 4 (lower is better)
Translates to: RCWNHHCSRCQFPSWFEVSSCSK*TSSRIR
Trigger: CCTGATTCTTGACGAGGTGCACTTGCTGCATGAAGA...AACCTCAAACCAACTAGGAAATTGACAGCGGCTGCAGTGATGATTCCAGCAACG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000035606.10
CDS-3UTR CCA 90 bp CGTTGCTGGAATCATCACTGCAGCCGCTGTCAATTTCCTAGTTGGTTTGAGGTTTTCCTCAAACCCAACTaGCATTGGTTCACCATAGGG +
Preference number: 4 (lower is better)
Translates to: RCWNHHCSRCQFPSWFEVFLKPN*HWFTIG
Trigger: CCCTATGGTGAACCAATGCCAGTTGGGTTTGAGGAA...AACCTCAAACCAACTAGGAAATTGACAGCGGCTGCAGTGATGATTCCAGCAACG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000035606.10
CDS-3UTR CCA 90 bp GCTGGAATCATCACTGCAGCCGCTGTCAATTTCCTAGTTGGTTTGAGGTTTGAAATCAGTATCATAATCTaGGCAGGGCAGCATGGCTCG +
Preference number: 4 (lower is better)
Translates to: AGIITAAAVNFLVGLRFEISIII*AGQHGS
Trigger: CGAGCCATGCTGCCCTGCCCAGATTATGATACTGAT...TTCAAACCTCAAACCAACTAGGAAATTGACAGCGGCTGCAGTGATGATTCCAGC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000035606.10
CDS-3UTR TCA 90 bp GCTGGAATCATCACTGCAGCCGCTGTCAATTTCCTAGTTGGTTTGAGGTTTGAATGGAACTGGGCGAACTaGTGGTCGGAAGTTAAACAA +
Preference number: 4 (lower is better)
Translates to: AGIITAAAVNFLVGLRFEWNWAN*WSEVKQ
Trigger: TTGTTTAACTTCCGACCATCAGTTCGCCCAGTTCCA...TTCAAACCTCAAACCAACTAGGAAATTGACAGCGGCTGCAGTGATGATTCCAGC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000035606.10
CDS-3UTR TCA 90 bp GCTGGAATCATCACTGCAGCCGCTGTCAATTTCCTAGTTGGTTTGAGGTTTGAATGCATCACTCAGAATTaGCAGCAGTTCCTCAGTGCT +
Preference number: 4 (lower is better)
Translates to: AGIITAAAVNFLVGLRFECITQN*QQFLSA
Trigger: AGCACTGAGGAACTGCTGTCAATTCTGAGTGATGCA...TTCAAACCTCAAACCAACTAGGAAATTGACAGCGGCTGCAGTGATGATTCCAGC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000035606.10
CDS-3UTR TCA 90 bp GCAGCCGCTGTCAATTTCCTAGTTGGTTTGAGGTTTGAAGTTGATTCTGTCAAGTTGCCTGGCATACTCTaGGAGCTTGGTCTAAGACTG +
Preference number: 4 (lower is better)
Translates to: AAAVNFLVGLRFEVDSVKLPGIL*ELGLRL
Trigger: CAGTCTTAGACCAAGCTCTCAGAGTATGCCAGGCAA...CTTGACAGAATCAACTTCAAACCTCAAACCAACTAGGAAATTGACAGCGGCTGC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000035606.10
CDS-3UTR TCA 90 bp CGTTGCTGGAATCATCACTGCAGCCGCTGTCAATTTCCTAGTTGGTTTGAGGTTCGAGGAGTAACTGCGTaGTTCTCATGTTTTCCCTTT +
Preference number: 4 (lower is better)
Translates to: RCWNHHCSRCQFPSWFEVRGVTA*FSCFPF
Trigger: AAAGGGAAAACATGAGAATCACGCAGTTACTCCTCG...AACCTCAAACCAACTAGGAAATTGACAGCGGCTGCAGTGATGATTCCAGCAACG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000035606.10
CDS-3UTR GCA 90 bp GCAGCCGCTGTCAATTTCCTAGTTGGTTTGAGGTTTGAAGTTGATTCTGTCAAGCCAAATTTGTCAAATTaGGGTCGTCCAGCTCGGCCA +
Preference number: 4 (lower is better)
Translates to: AAAVNFLVGLRFEVDSVKPNLSN*GRPARP
Trigger: TGGCCGAGCTGGACGACCGCAATTTGACAAATTTGG...CTTGACAGAATCAACTTCAAACCTCAAACCAACTAGGAAATTGACAGCGGCTGC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000035606.10
CDS-3UTR GCA 90 bp GCTGGAATCATCACTGCAGCCGCTGTCAATTTCCTAGTTGGTTTGAGGTTTGAAAGGAGCTGTTCTCGATaGTTCCTTAGTGTTGGGTCA +
Preference number: 4 (lower is better)
Translates to: AGIITAAAVNFLVGLRFERSCSR*FLSVGS
Trigger: TGACCCAACACTAAGGAAGCATCGAGAACAGCTCCT...TTCAAACCTCAAACCAACTAGGAAATTGACAGCGGCTGCAGTGATGATTCCAGC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000035606.10
CDS-3UTR CCA 90 bp GGAATCATCACTGCAGCCGCTGTCAATTTCCTAGTTGGTTTGAGGTTTGAAGTTCATACTAGCCATGCGTaGGCAGTAATGTTGTCCTGG +
Preference number: 4 (lower is better)
Translates to: GIITAAAVNFLVGLRFEVHTSHA*AVMLSW
Trigger: CCAGGACAACATTACTGCCCACGCATGGCTAGTATG...AACTTCAAACCTCAAACCAACTAGGAAATTGACAGCGGCTGCAGTGATGATTCC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000035606.10
CDS-3UTR CCA 90 bp CGTTGCTGGAATCATCACTGCAGCCGCTGTCAATTTCCTAGTTGGTTTGAGGTTCAAAACAGGCTTGGCTaGAGAGTGACTTCTAATTGC +
Preference number: 4 (lower is better)
Translates to: RCWNHHCSRCQFPSWFEVQNRLG*RVTSNC
Trigger: GCAATTAGAAGTCACTCTCCAGCCAAGCCTGTTTTG...AACCTCAAACCAACTAGGAAATTGACAGCGGCTGCAGTGATGATTCCAGCAACG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000035606.10
CDS-3UTR CCA 90 bp GGAATCATCACTGCAGCCGCTGTCAATTTCCTAGTTGGTTTGAGGTTTGAAGTTGCAAGAGATGGGCTTTaGTGTGAGGGCTGTCAAATG +
Preference number: 4 (lower is better)
Translates to: GIITAAAVNFLVGLRFEVARDGL*CEGCQM
Trigger: CATTTGACAGCCCTCACACCAAAGCCCATCTCTTGC...AACTTCAAACCTCAAACCAACTAGGAAATTGACAGCGGCTGCAGTGATGATTCC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000035606.10
CDS-3UTR TCA 90 bp GGTAGACACCAAGTAATTCGACTTGTTCACATGACTGAACAGTCAAGACTCTCAATCTGGTACGCTTTGTaGCTGATGCCGTATGCTAGC +
Preference number: 4 (lower is better)
Translates to: GRHQVIRLVHMTEQSRLSIWYAL*LMPYAS
Trigger: GCTAGCATACGGCATCAGTCACAAAGCGTACCAGAT...TGAGAGTCTTGACTGTTCAGTCATGTGAACAAGTCGAATTACTTGGTGTCTACC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000035606.10
CDS-3UTR TCA 90 bp GCAGCCGCTGTCAATTTCCTAGTTGGTTTGAGGTTTGAAGTTGATTCTGTCAAGCATTTCCTGAAAAGGTaGAGGTGGTGCTGCTCTATG +
Preference number: 4 (lower is better)
Translates to: AAAVNFLVGLRFEVDSVKHFLKR*RWCCSM
Trigger: CATAGAGCAGCACCACCTTCACCTTTTCAGGAAATG...CTTGACAGAATCAACTTCAAACCTCAAACCAACTAGGAAATTGACAGCGGCTGC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000035606.10
CDS-3UTR TCA 90 bp GGTAGACACCAAGTAATTCGACTTGTTCACATGACTGAACAGTCAAGACTCTCAGGACTCTCTGTAGGCTaGCTTGAAGCACATACTCCT +
Preference number: 4 (lower is better)
Translates to: GRHQVIRLVHMTEQSRLSGLSVG*LEAHTP
Trigger: AGGAGTATGTGCTTCAAGTCAGCCTACAGAGAGTCC...TGAGAGTCTTGACTGTTCAGTCATGTGAACAAGTCGAATTACTTGGTGTCTACC
46% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000035606.10
CDS-3UTR TCA 90 bp CTTGTTCACATGACTGAACAGTCAAGACTCTCAGCCTCTGGTCAAATGGCCTGTATACTGACAAGTCAGTaGAGACATCAGAGTCCTTTG +
Preference number: 4 (lower is better)
Translates to: LVHMTEQSRLSASGQMACILTSQ*RHQSPL
Trigger: CAAAGGACTCTGATGTCTTCACTGACTTGTCAGTAT...ACAGGCCATTTGACCAGAGGCTGAGAGTCTTGACTGTTCAGTCATGTGAACAAG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000035606.10
CDS-3UTR GCA 90 bp CGTTGCTGGAATCATCACTGCAGCCGCTGTCAATTTCCTAGTTGGTTTGAGGTTATTCTTTCACAACAATaGCCAGTGGCTCTAGACGTT +
Preference number: 4 (lower is better)
Translates to: RCWNHHCSRCQFPSWFEVILSQQ*PVALDV
Trigger: AACGTCTAGAGCCACTGGGCATTGTTGTGAAAGAAT...AACCTCAAACCAACTAGGAAATTGACAGCGGCTGCAGTGATGATTCCAGCAACG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000035606.10
CDS-3UTR GCA 90 bp GTTGCTGGAATCATCACTGCAGCCGCTGTCAATTTCCTAGTTGGTTTGAGGTTTCCAACGTTTCCTCAGTaGAATTTCAAAGAGAGCACG +
Preference number: 4 (lower is better)
Translates to: VAGIITAAAVNFLVGLRFPTFPQ*NFKEST
Trigger: CGTGCTCTCTTTGAAATTGCACTGAGGAAACGTTGG...AAACCTCAAACCAACTAGGAAATTGACAGCGGCTGCAGTGATGATTCCAGCAAC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000035606.10
CDS-3UTR GCA 90 bp CTTGTTCACATGACTGAACAGTCAAGACTCTCAGCCTCTGGTCAAATGGCCTGTAGTGTGTGGAATATCTaGGTCTGTACAGGGTTAAAG +
Preference number: 4 (lower is better)
Translates to: LVHMTEQSRLSASGQMACSVWNI*VCTGLK
Trigger: CTTTAACCCTGTACAGACGCAGATATTCCACACACT...ACAGGCCATTTGACCAGAGGCTGAGAGTCTTGACTGTTCAGTCATGTGAACAAG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000035606.10
CDS-3UTR GCA 90 bp CGTTGCTGGAATCATCACTGCAGCCGCTGTCAATTTCCTAGTTGGTTTGAGGTTTCAGTGGTTCAATGGTaGGATTATCCTCTCCAACTT +
Preference number: 4 (lower is better)
Translates to: RCWNHHCSRCQFPSWFEVSVVQW*DYPLQL
Trigger: AAGTTGGAGAGGATAATCGCACCATTGAACCACTGA...AACCTCAAACCAACTAGGAAATTGACAGCGGCTGCAGTGATGATTCCAGCAACG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000035606.10
CDS-3UTR CCA 90 bp GTTGCTGGAATCATCACTGCAGCCGCTGTCAATTTCCTAGTTGGTTTGAGGTTTCACTCTATCGTTACATaGGTTTTCTGCCATCTGGAC +
Preference number: 4 (lower is better)
Translates to: VAGIITAAAVNFLVGLRFHSIVT*VFCHLD
Trigger: GTCCAGATGGCAGAAAACCCATGTAACGATAGAGTG...AAACCTCAAACCAACTAGGAAATTGACAGCGGCTGCAGTGATGATTCCAGCAAC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000035606.10
CDS-3UTR CCA 90 bp GCTGGAATCATCACTGCAGCCGCTGTCAATTTCCTAGTTGGTTTGAGGTTTGAAGCAGTAATGTTGTCCTaGGAAACCCTGAATGTGAAC +
Preference number: 4 (lower is better)
Translates to: AGIITAAAVNFLVGLRFEAVMLS*ETLNVN
Trigger: GTTCACATTCAGGGTTTCCCAGGACAACATTACTGC...TTCAAACCTCAAACCAACTAGGAAATTGACAGCGGCTGCAGTGATGATTCCAGC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000035606.10
CDS-3UTR CCA 90 bp GGAATCATCACTGCAGCCGCTGTCAATTTCCTAGTTGGTTTGAGGTTTGAAGTTATTCAACCACTGCTTTaGGTCTTCTTCAGTGGCCAG +
Preference number: 4 (lower is better)
Translates to: GIITAAAVNFLVGLRFEVIQPLL*VFFSGQ
Trigger: CTGGCCACTGAAGAAGACCCAAAGCAGTGGTTGAAT...AACTTCAAACCTCAAACCAACTAGGAAATTGACAGCGGCTGCAGTGATGATTCC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000035606.10
CDS-3UTR CCA 90 bp GTTGCTGGAATCATCACTGCAGCCGCTGTCAATTTCCTAGTTGGTTTGAGGTTTTCGACCACATGTCAGTaGTTCAATGGTGCGATTATC +
Preference number: 4 (lower is better)
Translates to: VAGIITAAAVNFLVGLRFSTTCQ*FNGAII
Trigger: GATAATCGCACCATTGAACCACTGACATGTGGTCGA...AAACCTCAAACCAACTAGGAAATTGACAGCGGCTGCAGTGATGATTCCAGCAAC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000035606.10
CDS-3UTR CCA 90 bp GTTGCTGGAATCATCACTGCAGCCGCTGTCAATTTCCTAGTTGGTTTGAGGTTTTTTGGAAGCCCAAAATaGACTCTCTGTAGGCTGACT +
Preference number: 4 (lower is better)
Translates to: VAGIITAAAVNFLVGLRFFGSPK*TLCRLT
Trigger: AGTCAGCCTACAGAGAGTCCATTTTGGGCTTCCAAA...AAACCTCAAACCAACTAGGAAATTGACAGCGGCTGCAGTGATGATTCCAGCAAC
46% GC, longest homopolymer 6 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000035606.10
CDS-3UTR TCA 90 bp GACAGCGAAGAAGGTGAACATCCCATGTTGACTATTGTGTCTAAAACGTTATTCTTGCTTGGTGACATTTaGAAAGGAGCGCAAGGCTCC +
Preference number: 4 (lower is better)
Translates to: DSEEGEHPMLTIVSKTLFLLGDI*KGAQGS
Trigger: GGAGCCTTGCGCTCCTTTTCAAATGTCACCAAGCAA...GAATAACGTTTTAGACACAATAGTCAACATGGGATGTTCACCTTCTTCGCTGTC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000219226.2
CDS-3UTR TCA 90 bp CTTGTTCACATGACTGAACAGTCAAGACTCTCAGCCTCTGGTCAAATGGCCTGTACATTACAGTCTGTGTaGTACAGTGTGTGGAATATC +
Preference number: 4 (lower is better)
Translates to: LVHMTEQSRLSASGQMACTLQSV*YSVWNI
Trigger: GATATTCCACACACTGTATCACACAGACTGTAATGT...ACAGGCCATTTGACCAGAGGCTGAGAGTCTTGACTGTTCAGTCATGTGAACAAG
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000035606.10
CDS-3UTR TCA 90 bp GGAATCATCACTGCAGCCGCTGTCAATTTCCTAGTTGGTTTGAGGTTTGAAGTTTCTGCAGCACATCTGTaGTGGGAAAATCCACATAAC +
Preference number: 4 (lower is better)
Translates to: GIITAAAVNFLVGLRFEVSAAHL*WENPHN
Trigger: GTTATGTGGATTTTCCCATCACAGATGTGCTGCAGA...AACTTCAAACCTCAAACCAACTAGGAAATTGACAGCGGCTGCAGTGATGATTCC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000035606.10
CDS-3UTR TCA 90 bp GGAATCATCACTGCAGCCGCTGTCAATTTCCTAGTTGGTTTGAGGTTTGAAGTTCTGCCCAATCAGATGTaGCAGGAACTTGTTTATGGA +
Preference number: 4 (lower is better)
Translates to: GIITAAAVNFLVGLRFEVLPNQM*QELVYG
Trigger: TCCATAAACAAGTTCCTGTCACATCTGATTGGGCAG...AACTTCAAACCTCAAACCAACTAGGAAATTGACAGCGGCTGCAGTGATGATTCC
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000035606.10
CDS-3UTR CCA 90 bp GTTGCTGGAATCATCACTGCAGCCGCTGTCAATTTCCTAGTTGGTTTGAGGTTTACAAATACCATCACCTaGTGTCCAGCCTTTACTTGT +
Preference number: 4 (lower is better)
Translates to: VAGIITAAAVNFLVGLRFTNTIT*CPAFTC
Trigger: ACAAGTAAAGGCTGGACACCAGGTGATGGTATTTGT...AAACCTCAAACCAACTAGGAAATTGACAGCGGCTGCAGTGATGATTCCAGCAAC
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000035606.10
CDS-3UTR CCA 90 bp GCTGGAATCATCACTGCAGCCGCTGTCAATTTCCTAGTTGGTTTGAGGTTTGAACAAAGGAGCCTCTTTTaGCAGCGTATATTTGTGTTC +
Preference number: 4 (lower is better)
Translates to: AGIITAAAVNFLVGLRFEQRSLF*QRIFVF
Trigger: GAACACAAATATACGCTGCCAAAAGAGGCTCCTTTG...TTCAAACCTCAAACCAACTAGGAAATTGACAGCGGCTGCAGTGATGATTCCAGC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000035606.10
CDS-3UTR CCA 90 bp GTTGCTGGAATCATCACTGCAGCCGCTGTCAATTTCCTAGTTGGTTTGAGGTTTATTCTAGCTGCATTCTaGGCGACATATGCAGAATCT +
Preference number: 4 (lower is better)
Translates to: VAGIITAAAVNFLVGLRFILAAF*ATYAES
Trigger: AGATTCTGCATATGTCGCCCAGAATGCAGCTAGAAT...AAACCTCAAACCAACTAGGAAATTGACAGCGGCTGCAGTGATGATTCCAGCAAC
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000035606.10
CDS-3UTR CCA 90 bp GGAATCATCACTGCAGCCGCTGTCAATTTCCTAGTTGGTTTGAGGTTTGAAGTTCCAACTTCAATGCAGTaGGAAAGCTCCAATTCAACC +
Preference number: 4 (lower is better)
Translates to: GIITAAAVNFLVGLRFEVPTSMQ*ESSNST
Trigger: GGTTGAATTGGAGCTTTCCCACTGCATTGAAGTTGG...AACTTCAAACCTCAAACCAACTAGGAAATTGACAGCGGCTGCAGTGATGATTCC
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000035606.10
CDS-3UTR TCA 90 bp CGTTGCTGGAATCATCACTGCAGCCGCTGTCAATTTCCTAGTTGGTTTGAGGTTACAGAGTCCGTCATGTaGAATGTCATAAAGAGAAAT +
Preference number: 4 (lower is better)
Translates to: RCWNHHCSRCQFPSWFEVTESVM*NVIKRN
Trigger: ATTTCTCTTTATGACATTTCACATGACGGACTCTGT...AACCTCAAACCAACTAGGAAATTGACAGCGGCTGCAGTGATGATTCCAGCAACG
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000035606.10
CDS-3UTR TCA 90 bp AAACTCATAAATCTGTTACAAAAGGCAGCAGTTTCTAAAAGGCCTCTGTGGCTATCTTGGCTCCAGCTATaGATGCTGATGTTTCTCGGG +
Preference number: 4 (lower is better)
Translates to: KLINLLQKAAVSKRPLWLSWLQL*MLMFLG
Trigger: CCCGAGAAACATCAGCATTCATAGCTGGAGCCAAGA...TAGCCACAGAGGCCTTTTAGAAACTGCTGCCTTTTGTAACAGATTTATGAGTTT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000035606.10
CDS-3UTR TCA 90 bp GCAGCCGCTGTCAATTTCCTAGTTGGTTTGAGGTTTGAAGTTGATTCTGTCAAGGCTCTAGACGTTTGCTaGAGTAATTTGTCATCTCAG +
Preference number: 4 (lower is better)
Translates to: AAAVNFLVGLRFEVDSVKALDVC*SNLSSQ
Trigger: CTGAGATGACAAATTACTTCAGCAAACGTCTAGAGC...CTTGACAGAATCAACTTCAAACCTCAAACCAACTAGGAAATTGACAGCGGCTGC
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000035606.10
CDS-3UTR TCA 90 bp GCTGGAATCATCACTGCAGCCGCTGTCAATTTCCTAGTTGGTTTGAGGTTTGAAGGCCAAATATCTGCATaGCATCTAAAATTCCAAGGT +
Preference number: 4 (lower is better)
Translates to: AGIITAAAVNFLVGLRFEGQISA*HLKFQG
Trigger: ACCTTGGAATTTTAGATGTCATGCAGATATTTGGCC...TTCAAACCTCAAACCAACTAGGAAATTGACAGCGGCTGCAGTGATGATTCCAGC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000035606.10
CDS-3UTR TCA 90 bp GCTGGAATCATCACTGCAGCCGCTGTCAATTTCCTAGTTGGTTTGAGGTTTGAAAGACTTTCCAGAAACTaGCTCTCAATTGGGTTTTGT +
Preference number: 4 (lower is better)
Translates to: AGIITAAAVNFLVGLRFERLSRN*LSIGFC
Trigger: ACAAAACCCAATTGAGAGTCAGTTTCTGGAAAGTCT...TTCAAACCTCAAACCAACTAGGAAATTGACAGCGGCTGCAGTGATGATTCCAGC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000035606.10
CDS-3UTR TCA 90 bp CACCACAATGTAATTTTCCTTAGAAAAAGGAGTAGCTGGTATTCATGTAAACAGGGAGGACAGTCCGTGTaGTGGGCTGAATGGAAGCTT +
Preference number: 4 (lower is better)
Translates to: HHNVIFLRKRSSWYSCKQGGQSV*WAEWKL
Trigger: AAGCTTCCATTCAGCCCATCACACGGACTGTCCTCC...CTGTTTACATGAATACCAGCTACTCCTTTTTCTAAGGAAAATTACATTGTGGTG
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000035606.10
CDS-3UTR TCA 90 bp GGTAGACACCAAGTAATTCGACTTGTTCACATGACTGAACAGTCAAGACTCTCACACGTACTAGAGCTTTaGGGGGTGCAATATATACTG +
Preference number: 4 (lower is better)
Translates to: GRHQVIRLVHMTEQSRLSHVLEL*GVQYIL
Trigger: CAGTATATATTGCACCCCTCAAAGCTCTAGTACGTG...TGAGAGTCTTGACTGTTCAGTCATGTGAACAAGTCGAATTACTTGGTGTCTACC
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000035606.10
CDS-3UTR TCA 90 bp CACCACAATGTAATTTTCCTTAGAAAAAGGAGTAGCTGGTATTCATGTAAACAGCGGCTGAGATGCGCTTaGAGCAAGAGATGGGCTTTG +
Preference number: 4 (lower is better)
Translates to: HHNVIFLRKRSSWYSCKQRLRCA*SKRWAL
Trigger: CAAAGCCCATCTCTTGCTTCAAGCGCATCTCAGCCG...CTGTTTACATGAATACCAGCTACTCCTTTTTCTAAGGAAAATTACATTGTGGTG
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000035606.10
CDS-3UTR GCA 90 bp GAAGCAAGCATGTCATATAGAGTACAGCAAAGATCTTCAACTCTTGCTGCTTCAAGCCCCACTCTCAATTaGTTCTCTCCCATTATCCGT +
Preference number: 4 (lower is better)
Translates to: EASMSYRVQQRSSTLAASSPTLN*FSPIIR
Trigger: ACGGATAATGGGAGAGAAGCAATTGAGAGTGGGGCT...TGAAGCAGCAAGAGTTGAAGATCTTTGCTGTACTCTATATGACATGCTTGCTTC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000219226.2
CDS-3UTR GCA 90 bp GCAGCCGCTGTCAATTTCCTAGTTGGTTTGAGGTTTGAAGTTGATTCTGTCAAGTCCATATTCAACCACTaGTTTGGGTCTTCTTCAGTG +
Preference number: 4 (lower is better)
Translates to: AAAVNFLVGLRFEVDSVKSIFNH*FGSSSV
Trigger: CACTGAAGAAGACCCAAAGCAGTGGTTGAATATGGA...CTTGACAGAATCAACTTCAAACCTCAAACCAACTAGGAAATTGACAGCGGCTGC
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000035606.10
CDS-3UTR GCA 90 bp GGAATCATCACTGCAGCCGCTGTCAATTTCCTAGTTGGTTTGAGGTTTGAAGTTCTAGAATTACAGCTTTaGCCTGGTCATCAAACTGAG +
Preference number: 4 (lower is better)
Translates to: GIITAAAVNFLVGLRFEVLELQL*PGHQTE
Trigger: CTCAGTTTGATGACCAGGGCAAAGCTGTAATTCTAG...AACTTCAAACCTCAAACCAACTAGGAAATTGACAGCGGCTGCAGTGATGATTCC
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000035606.10
CDS-3UTR CCA 90 bp CTTGTTCACATGACTGAACAGTCAAGACTCTCAGCCTCTGGTCAAATGGCCTGTATTGTAATTCTGTTCTaGAGCAGCTTCTCAATCAGA +
Preference number: 4 (lower is better)
Translates to: LVHMTEQSRLSASGQMACIVILF*SSFSIR
Trigger: TCTGATTGAGAAGCTGCTCCAGAACAGAATTACAAT...ACAGGCCATTTGACCAGAGGCTGAGAGTCTTGACTGTTCAGTCATGTGAACAAG
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000035606.10
CDS-3UTR CCA 90 bp GGAATCATCACTGCAGCCGCTGTCAATTTCCTAGTTGGTTTGAGGTTTGAAGTTTGCCAAGGCTTTCATTaGAGCGACATACACAATCTT +
Preference number: 4 (lower is better)
Translates to: GIITAAAVNFLVGLRFEVCQGFH*SDIHNL
Trigger: AAGATTGTGTATGTCGCTCCAATGAAAGCCTTGGCA...AACTTCAAACCTCAAACCAACTAGGAAATTGACAGCGGCTGCAGTGATGATTCC
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000035606.10
CDS-3UTR CCA 90 bp CACATTTTCCAAGATCAGTGTGTGGTCTTTGAAAAATCATCATTGATCTCTGCACCTGCCGTAAGGTCCTaGCGACTATGCTTTCTAGCA +
Preference number: 4 (lower is better)
Translates to: HIFQDQCVVFEKSSLISAPAVRS*RLCFLA
Trigger: TGCTAGAAAGCATAGTCGCCAGGACCTTACGGCAGG...TGCAGAGATCAATGATGATTTTTCAAAGACCACACACTGATCTTGGAAAATGTG
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000035606.10
CDS-3UTR CCA 90 bp GCAGCCGCTGTCAATTTCCTAGTTGGTTTGAGGTTTGAAGTTGATTCTGTCAAGTTATCATACTCTGTGTaGATTCAACCTGCCGTAAGG +
Preference number: 4 (lower is better)
Translates to: AAAVNFLVGLRFEVDSVKLSYSV*IQPAVR
Trigger: CCTTACGGCAGGTTGAATCCACACAGAGTATGATAA...CTTGACAGAATCAACTTCAAACCTCAAACCAACTAGGAAATTGACAGCGGCTGC
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000035606.10
CDS-3UTR CCA 90 bp CTTGTTCACATGACTGAACAGTCAAGACTCTCAGCCTCTGGTCAAATGGCCTGTATCTCTGCATTTAAGTaGTCAGACAACACTCCTAAT +
Preference number: 4 (lower is better)
Translates to: LVHMTEQSRLSASGQMACISAFK*SDNTPN
Trigger: ATTAGGAGTGTTGTCTGACCACTTAAATGCAGAGAT...ACAGGCCATTTGACCAGAGGCTGAGAGTCTTGACTGTTCAGTCATGTGAACAAG
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000035606.10
CDS-3UTR TCA 90 bp TGGAAGGAGCACTCTATATACTTTATTTCCACCAGTTACAGTGTTCACATTTTCTTGCTTGGTGACATTTaGAAAGGAGCGCAAGGCTCC +
Preference number: 4 (lower is better)
Translates to: WKEHSIYFISTSYSVHIFLLGDI*KGAQGS
Trigger: GGAGCCTTGCGCTCCTTTTCAAATGTCACCAAGCAA...GAAAATGTGAACACTGTAACTGGTGGAAATAAAGTATATAGAGTGCTCCTTCCA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000035606.10
CDS-3UTR TCA 90 bp GTTGCTGGAATCATCACTGCAGCCGCTGTCAATTTCCTAGTTGGTTTGAGGTTTTACAGACTAGGACTTTaGTATGCCCATTTGAAAACA +
Preference number: 4 (lower is better)
Translates to: VAGIITAAAVNFLVGLRFYRLGL*YAHLKT
Trigger: TGTTTTCAAATGGGCATATCAAAGTCCTAGTCTGTA...AAACCTCAAACCAACTAGGAAATTGACAGCGGCTGCAGTGATGATTCCAGCAAC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000035606.10
CDS-3UTR TCA 90 bp AAACTCATAAATCTGTTACAAAAGGCAGCAGTTTCTAAAAGGCCTCTGTGGCTACACACCTCCTGGAGCTaGGAGTTCACAGAAATTGTT +
Preference number: 4 (lower is better)
Translates to: KLINLLQKAAVSKRPLWLHTSWS*EFTEIV
Trigger: AACAATTTCTGTGAACTCTCAGCTCCAGGAGGTGTG...TAGCCACAGAGGCCTTTTAGAAACTGCTGCCTTTTGTAACAGATTTATGAGTTT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000035606.10
CDS-3UTR TCA 90 bp GCAGCCGCTGTCAATTTCCTAGTTGGTTTGAGGTTTGAAGTTGATTCTGTCAAGGGGCTGTCAAATGAATaGGGATTTAATTCAATGGGA +
Preference number: 4 (lower is better)
Translates to: AAAVNFLVGLRFEVDSVKGLSNE*GFNSMG
Trigger: TCCCATTGAATTAAATCCTCATTCATTTGACAGCCC...CTTGACAGAATCAACTTCAAACCTCAAACCAACTAGGAAATTGACAGCGGCTGC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000035606.10
CDS-3UTR GCA 90 bp GCTGGAATCATCACTGCAGCCGCTGTCAATTTCCTAGTTGGTTTGAGGTTTGAATTAAACAAACCCATCTaGTTAATGTTGAGCCAGTCA +
Preference number: 4 (lower is better)
Translates to: AGIITAAAVNFLVGLRFELNKPI*LMLSQS
Trigger: TGACTGGCTCAACATTAAGCAGATGGGTTTGTTTAA...TTCAAACCTCAAACCAACTAGGAAATTGACAGCGGCTGCAGTGATGATTCCAGC
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000035606.10
CDS-3UTR GCA 90 bp GGAATCATCACTGCAGCCGCTGTCAATTTCCTAGTTGGTTTGAGGTTTGAAGTTAAGAAATTCCATGCCTaGTTTGTTTTTGCAGGCTGT +
Preference number: 4 (lower is better)
Translates to: GIITAAAVNFLVGLRFEVKKFHA*FVFAGC
Trigger: ACAGCCTGCAAAAACAAAGCAGGCATGGAATTTCTT...AACTTCAAACCTCAAACCAACTAGGAAATTGACAGCGGCTGCAGTGATGATTCC
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000035606.10
CDS-3UTR CCA 90 bp GTTGCTGGAATCATCACTGCAGCCGCTGTCAATTTCCTAGTTGGTTTGAGGTTTTGGCTGAGTTTATCGTaGGTTGTTATAATGATTCCT +
Preference number: 4 (lower is better)
Translates to: VAGIITAAAVNFLVGLRFWLSLS*VVIMIP
Trigger: AGGAATCATTATAACAACCCACGATAAACTCAGCCA...AAACCTCAAACCAACTAGGAAATTGACAGCGGCTGCAGTGATGATTCCAGCAAC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000035606.10
CDS-3UTR CCA 90 bp GGTAGACACCAAGTAATTCGACTTGTTCACATGACTGAACAGTCAAGACTCTCACTCATGTTTTCCCTTTaGAAGCCCAAAATGGACTCT +
Preference number: 4 (lower is better)
Translates to: GRHQVIRLVHMTEQSRLSLMFSL*KPKMDS
Trigger: AGAGTCCATTTTGGGCTTCCAAAGGGAAAACATGAG...TGAGAGTCTTGACTGTTCAGTCATGTGAACAAGTCGAATTACTTGGTGTCTACC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000035606.10
CDS-3UTR TCA 90 bp CACCACAATGTAATTTTCCTTAGAAAAAGGAGTAGCTGGTATTCATGTAAACAGTTTTCTCCACAGGCTTaGGCTCAGGAGTGTAGGGTT +
Preference number: 4 (lower is better)
Translates to: HHNVIFLRKRSSWYSCKQFSPQA*AQECRV
Trigger: AACCCTACACTCCTGAGCTCAAGCCTGTGGAGAAAA...CTGTTTACATGAATACCAGCTACTCCTTTTTCTAAGGAAAATTACATTGTGGTG
41% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000035606.10
CDS-3UTR GCA 90 bp CACATTTTCCAAGATCAGTGTGTGGTCTTTGAAAAATCATCATTGATCTCTGCAAGCCCCACTCTCAATTaGTTCTCTCCCATTATCCGT +
Preference number: 4 (lower is better)
Translates to: HIFQDQCVVFEKSSLISASPTLN*FSPIIR
Trigger: ACGGATAATGGGAGAGAAGCAATTGAGAGTGGGGCT...TGCAGAGATCAATGATGATTTTTCAAAGACCACACACTGATCTTGGAAAATGTG
41% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000035606.10
CDS-3UTR GCA 90 bp GGTAGACACCAAGTAATTCGACTTGTTCACATGACTGAACAGTCAAGACTCTCAGCTCGGCCAAATATCTaGATGACATCTAAAATTCCA +
Preference number: 4 (lower is better)
Translates to: GRHQVIRLVHMTEQSRLSARPNI*MTSKIP
Trigger: TGGAATTTTAGATGTCATGCAGATATTTGGCCGAGC...TGAGAGTCTTGACTGTTCAGTCATGTGAACAAGTCGAATTACTTGGTGTCTACC
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000035606.10
CDS-3UTR GCA 90 bp GAACAGGATGCACTTTATACAGGTAGCAAATCACCAAAGAGTAAACTTAACAAAGCAGTTCCTCAGTGCTaGACTCAGGTTTCAAACGGT +
Preference number: 4 (lower is better)
Translates to: EQDALYTGSKSPKSKLNKAVPQC*TQVSNG
Trigger: ACCGTTTGAAACCTGAGTGCAGCACTGAGGAACTGC...TTTGTTAAGTTTACTCTTTGGTGATTTGCTACCTGTATAAAGTGCATCCTGTTC
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000035606.10
CDS-3UTR CCA 90 bp GCAGCCGCTGTCAATTTCCTAGTTGGTTTGAGGTTTGAAGTTGATTCTGTCAAGTTGGTATTCTCTCTCTaGATTCCTTCTGGTAAAATC +
Preference number: 4 (lower is better)
Translates to: AAAVNFLVGLRFEVDSVKLVFSL*IPSGKI
Trigger: GATTTTACCAGAAGGAATCCAGAGAGAGAATACCAA...CTTGACAGAATCAACTTCAAACCTCAAACCAACTAGGAAATTGACAGCGGCTGC
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000035606.10
CDS-3UTR TCA 90 bp AAACTCATAAATCTGTTACAAAAGGCAGCAGTTTCTAAAAGGCCTCTGTGGCTAATGCAGAATCTGATATaGGGGAGAAACTGTCCATCT +
Preference number: 4 (lower is better)
Translates to: KLINLLQKAAVSKRPLWLMQNLI*GRNCPS
Trigger: AGATGGACAGTTTCTCCCTCATATCAGATTCTGCAT...TAGCCACAGAGGCCTTTTAGAAACTGCTGCCTTTTGTAACAGATTTATGAGTTT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000035606.10
CDS-3UTR TCA 90 bp CACATTTTCCAAGATCAGTGTGTGGTCTTTGAAAAATCATCATTGATCTCTGCATCATGCAGGCCAGCATaGTGCATTCCTATTCCAAAA +
Preference number: 4 (lower is better)
Translates to: HIFQDQCVVFEKSSLISASCRPA*CIPIPK
Trigger: TTTTGGAATAGGAATGCATCATGCTGGCCTGCATGA...TGCAGAGATCAATGATGATTTTTCAAAGACCACACACTGATCTTGGAAAATGTG
40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000035606.10
CDS-3UTR TCA 90 bp CACCACAATGTAATTTTCCTTAGAAAAAGGAGTAGCTGGTATTCATGTAAACAGTCTGAATCAGGTGGGTaGTATTCAGGACGGTCACTA +
Preference number: 4 (lower is better)
Translates to: HHNVIFLRKRSSWYSCKQSESGG*YSGRSL
Trigger: TAGTGACCGTCCTGAATATCACCCACCTGATTCAGA...CTGTTTACATGAATACCAGCTACTCCTTTTTCTAAGGAAAATTACATTGTGGTG
40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000035606.10
CDS-3UTR GCA 90 bp GCAGCCGCTGTCAATTTCCTAGTTGGTTTGAGGTTTGAAGTTGATTCTGTCAAGTCACTTTTTGACAACTaGATATCTCCAGTCAATTCT +
Preference number: 4 (lower is better)
Translates to: AAAVNFLVGLRFEVDSVKSLFDN*ISPVNS
Trigger: AGAATTGACTGGAGATATGCAGTTGTCAAAAAGTGA...CTTGACAGAATCAACTTCAAACCTCAAACCAACTAGGAAATTGACAGCGGCTGC
40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000035606.10
CDS-3UTR GCA 90 bp CACCACAATGTAATTTTCCTTAGAAAAAGGAGTAGCTGGTATTCATGTAAACAGACAGCAGTTCCTCAGTaGTGCACTCAGGTTTCAAAC +
Preference number: 4 (lower is better)
Translates to: HHNVIFLRKRSSWYSCKQTAVPQ*CTQVSN
Trigger: GTTTGAAACCTGAGTGCAGCACTGAGGAACTGCTGT...CTGTTTACATGAATACCAGCTACTCCTTTTTCTAAGGAAAATTACATTGTGGTG
40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000035606.10
CDS-3UTR CCA 90 bp GGTAGACACCAAGTAATTCGACTTGTTCACATGACTGAACAGTCAAGACTCTCATGTACAGGGTTAAAGTaGCTGAAGTTATATAGAGCT +
Preference number: 4 (lower is better)
Translates to: GRHQVIRLVHMTEQSRLSCTGLK*LKLYRA
Trigger: AGCTCTATATAACTTCAGCCACTTTAACCCTGTACA...TGAGAGTCTTGACTGTTCAGTCATGTGAACAAGTCGAATTACTTGGTGTCTACC
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000035606.10
CDS-3UTR CCA 90 bp CACATTTTCCAAGATCAGTGTGTGGTCTTTGAAAAATCATCATTGATCTCTGCATCCTCCCCTAGCAGATaGATCTCATCTATGATGAGA +
Preference number: 4 (lower is better)
Translates to: HIFQDQCVVFEKSSLISASSPSR*ISSMMR
Trigger: TCTCATCATAGATGAGATCCATCTGCTAGGGGAGGA...TGCAGAGATCAATGATGATTTTTCAAAGACCACACACTGATCTTGGAAAATGTG
40% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000035606.10
CDS-3UTR TCA 90 bp CACATTTTCCAAGATCAGTGTGTGGTCTTTGAAAAATCATCATTGATCTCTGCACATTGCATCTTGCTTTaGTGTTATTGTACCTCCAGC +
Preference number: 4 (lower is better)
Translates to: HIFQDQCVVFEKSSLISAHCILL*CYCTSS
Trigger: GCTGGAGGTACAATAACATCAAAGCAAGATGCAATG...TGCAGAGATCAATGATGATTTTTCAAAGACCACACACTGATCTTGGAAAATGTG
39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000035606.10
CDS-3UTR TCA 90 bp CACATTTTCCAAGATCAGTGTGTGGTCTTTGAAAAATCATCATTGATCTCTGCAGATCAGCATGCAACTTaGTCCATTTGTTTTCATCCC +
Preference number: 4 (lower is better)
Translates to: HIFQDQCVVFEKSSLISADQHAT*SICFHP
Trigger: GGGATGAAAACAAATGGATCAAGTTGCATGCTGATC...TGCAGAGATCAATGATGATTTTTCAAAGACCACACACTGATCTTGGAAAATGTG
39% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000035606.10
CDS-3UTR GCA 90 bp TGGAAGGAGCACTCTATATACTTTATTTCCACCAGTTACAGTGTTCACATTTTCGTTACATGGGTTTTCTaGCATCTGGACAAAAGCAGT +
Preference number: 4 (lower is better)
Translates to: WKEHSIYFISTSYSVHIFVTWVF*HLDKSS
Trigger: ACTGCTTTTGTCCAGATGGCAGAAAACCCATGTAAC...GAAAATGTGAACACTGTAACTGGTGGAAATAAAGTATATAGAGTGCTCCTTCCA
39% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000035606.10
CDS-3UTR GCA 90 bp TGGAAGGAGCACTCTATATACTTTATTTCCACCAGTTACAGTGTTCACATTTTCTCCTTACAGTGGCATTaGGAGCATGTACAAATACCA +
Preference number: 4 (lower is better)
Translates to: WKEHSIYFISTSYSVHIFSLQWH*EHVQIP
Trigger: TGGTATTTGTACATGCTCGCAATGCCACTGTAAGGA...GAAAATGTGAACACTGTAACTGGTGGAAATAAAGTATATAGAGTGCTCCTTCCA
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000035606.10
CDS-3UTR CCA 90 bp CACCACAATGTAATTTTCCTTAGAAAAAGGAGTAGCTGGTATTCATGTAAACAGCAACATCGAGGTAGTTaGGTAAGGTTGCAGACAATC +
Preference number: 4 (lower is better)
Translates to: HHNVIFLRKRSSWYSCKQQHRGS*VRLQTI
Trigger: GATTGTCTGCAACCTTACCCAACTACCTCGATGTTG...CTGTTTACATGAATACCAGCTACTCCTTTTTCTAAGGAAAATTACATTGTGGTG
39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000035606.10
CDS-3UTR CCA 90 bp CACCACAATGTAATTTTCCTTAGAAAAAGGAGTAGCTGGTATTCATGTAAACAGCAAGAGAAATCAGGGTaGATGTTCAGTGATACTCGG +
Preference number: 4 (lower is better)
Translates to: HHNVIFLRKRSSWYSCKQQEKSG*MFSDTR
Trigger: CCGAGTATCACTGAACATCCACCCTGATTTCTCTTG...CTGTTTACATGAATACCAGCTACTCCTTTTTCTAAGGAAAATTACATTGTGGTG
39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000035606.10
CDS-3UTR CCA 90 bp TGGAAGGAGCACTCTATATACTTTATTTCCACCAGTTACAGTGTTCACATTTTCTCCAATAATTCTGTATaGGGAGGATGTCTCTCTGGT +
Preference number: 4 (lower is better)
Translates to: WKEHSIYFISTSYSVHIFSNNSV*GGCLSG
Trigger: ACCAGAGAGACATCCTCCCCATACAGAATTATTGGA...GAAAATGTGAACACTGTAACTGGTGGAAATAAAGTATATAGAGTGCTCCTTCCA
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000035606.10
CDS-3UTR CCA 90 bp CACCACAATGTAATTTTCCTTAGAAAAAGGAGTAGCTGGTATTCATGTAAACAGTCCATCCCACTTTTCTaGTGTGGTGACAATAAGGTC +
Preference number: 4 (lower is better)
Translates to: HHNVIFLRKRSSWYSCKQSIPLF*CGDNKV
Trigger: GACCTTATTGTCACCACACCAGAAAAGTGGGATGGA...CTGTTTACATGAATACCAGCTACTCCTTTTTCTAAGGAAAATTACATTGTGGTG
39% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000035606.10
CDS-3UTR CCA 90 bp AAACTCATAAATCTGTTACAAAAGGCAGCAGTTTCTAAAAGGCCTCTGTGGCTAGTGCTGCTCTATGTTTaGTATTGTGAGAAGAGAAGA +
Preference number: 4 (lower is better)
Translates to: KLINLLQKAAVSKRPLWLVLLYV*YCEKRR
Trigger: TCTTCTCTTCTCACAATACCAAACATAGAGCAGCAC...TAGCCACAGAGGCCTTTTAGAAACTGCTGCCTTTTGTAACAGATTTATGAGTTT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000035606.10
3UTR CAA 72 bp GCATGTCATATAGAGTACAGCAAAGATCTTCAACTCTaGCTGCTTCAGTCATTTCCTTTAACGTTGCGTTTA +
Preference number: 4 (lower is better)
Translates to: ACHIEYSKDLQL*LLQSFPLTLRL
Trigger: TAAACGCAACGTTAAAGGAAATGACTGAAGCAGCAAGAGTTGAAGATCTTTGCTGTACTCTATATGACATGC
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000219226.2
CDS-3UTR TCA 90 bp GAACAGGATGCACTTTATACAGGTAGCAAATCACCAAAGAGTAAACTTAACAAAGACATATGCAGAATCTaGTATGAGGGAGAAACTGTC +
Preference number: 4 (lower is better)
Translates to: EQDALYTGSKSPKSKLNKDICRI*YEGETV
Trigger: GACAGTTTCTCCCTCATATCAGATTCTGCATATGTC...TTTGTTAAGTTTACTCTTTGGTGATTTGCTACCTGTATAAAGTGCATCCTGTTC
38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000035606.10
CDS-3UTR TCA 90 bp GAACAGGATGCACTTTATACAGGTAGCAAATCACCAAAGAGTAAACTTAACAAATTGTTCGAGATACAATaGCTTCTAAAACTGGGCCTC +
Preference number: 4 (lower is better)
Translates to: EQDALYTGSKSPKSKLNKLFEIQ*LLKLGL
Trigger: GAGGCCCAGTTTTAGAAGTCATTGTATCTCGAACAA...TTTGTTAAGTTTACTCTTTGGTGATTTGCTACCTGTATAAAGTGCATCCTGTTC
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000035606.10
CDS-3UTR TCA 90 bp CACCACAATGTAATTTTCCTTAGAAAAAGGAGTAGCTGGTATTCATGTAAACAGGCTGTAAGTCGTGTTTaGCGTCTTGATGAGACAAAT +
Preference number: 4 (lower is better)
Translates to: HHNVIFLRKRSSWYSCKQAVSRV*RLDETN
Trigger: ATTTGTCTCATCAAGACGTCAAACACGACTTACAGC...CTGTTTACATGAATACCAGCTACTCCTTTTTCTAAGGAAAATTACATTGTGGTG
38% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000035606.10
CDS-3UTR TCA 90 bp CACATTTTCCAAGATCAGTGTGTGGTCTTTGAAAAATCATCATTGATCTCTGCAGTAGCAATGAGAACCTaGACTTTACAGTTCACAAAC +
Preference number: 4 (lower is better)
Translates to: HIFQDQCVVFEKSSLISAVAMRT*TLQFTN
Trigger: GTTTGTGAACTGTAAAGTTCAGGTTCTCATTGCTAC...TGCAGAGATCAATGATGATTTTTCAAAGACCACACACTGATCTTGGAAAATGTG
38% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000035606.10
CDS-3UTR GCA 90 bp CACCACAATGTAATTTTCCTTAGAAAAAGGAGTAGCTGGTATTCATGTAAACAGTCTAGCATTCAGAAGTaGATGTTCTCTCTGTATCCG +
Preference number: 4 (lower is better)
Translates to: HHNVIFLRKRSSWYSCKQSSIQK*MFSLYP
Trigger: CGGATACAGAGAGAACATGCACTTCTGAATGCTAGA...CTGTTTACATGAATACCAGCTACTCCTTTTTCTAAGGAAAATTACATTGTGGTG
38% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000035606.10
CDS-3UTR CCA 90 bp GAACAGGATGCACTTTATACAGGTAGCAAATCACCAAAGAGTAAACTTAACAAACTTCCTCATACAGCTTaGTATTCTCTCTCTGGATTC +
Preference number: 4 (lower is better)
Translates to: EQDALYTGSKSPKSKLNKLPHTA*YSLSGF
Trigger: GAATCCAGAGAGAGAATACCAAGCTGTATGAGGAAG...TTTGTTAAGTTTACTCTTTGGTGATTTGCTACCTGTATAAAGTGCATCCTGTTC
38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000035606.10
CDS-3UTR CCA 90 bp CACATTTTCCAAGATCAGTGTGTGGTCTTTGAAAAATCATCATTGATCTCTGCATCAGCATGTTTTCGTTaGTGTTGTAGGCTGTTTCAA +
Preference number: 4 (lower is better)
Translates to: HIFQDQCVVFEKSSLISASACFR*CCRLFQ
Trigger: TTGAAACAGCCTACAACACCAACGAAAACATGCTGA...TGCAGAGATCAATGATGATTTTTCAAAGACCACACACTGATCTTGGAAAATGTG
38% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000035606.10
CDS-3UTR CCA 90 bp AAACTCATAAATCTGTTACAAAAGGCAGCAGTTTCTAAAAGGCCTCTGTGGCTAAAACTGACTCTCAATTaGGTTTTGTTGAGTGAGCAA +
Preference number: 4 (lower is better)
Translates to: KLINLLQKAAVSKRPLWLKLTLN*VLLSEQ
Trigger: TTGCTCACTCAACAAAACCCAATTGAGAGTCAGTTT...TAGCCACAGAGGCCTTTTAGAAACTGCTGCCTTTTGTAACAGATTTATGAGTTT
38% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 1 transcripts:
ENSMUST00000035606.10
CDS-3UTR CCA 90 bp GAACAGGATGCACTTTATACAGGTAGCAAATCACCAAAGAGTAAACTTAACAAATTGGGTCTTCTTCAGTaGCCAGAAATGCTATCAACT +
Preference number: 4 (lower is better)
Translates to: EQDALYTGSKSPKSKLNKLGLLQ*PEMLST
Trigger: AGTTGATAGCATTTCTGGCCACTGAAGAAGACCCAA...TTTGTTAAGTTTACTCTTTGGTGATTTGCTACCTGTATAAAGTGCATCCTGTTC
38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000035606.10
CDS-3UTR GCA 90 bp AAACTCATAAATCTGTTACAAAAGGCAGCAGTTTCTAAAAGGCCTCTGTGGCTAACCCTCTGTTTTGTGTaGATCAAAGAGTTCATTAAA +
Preference number: 4 (lower is better)
Translates to: KLINLLQKAAVSKRPLWLTLCFV*IKEFIK
Trigger: TTTAATGAACTCTTTGATGCACACAAAACAGAGGGT...TAGCCACAGAGGCCTTTTAGAAACTGCTGCCTTTTGTAACAGATTTATGAGTTT
37% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000035606.10
CDS-3UTR CCA 90 bp CACCACAATGTAATTTTCCTTAGAAAAAGGAGTAGCTGGTATTCATGTAAACAGGAGGATTTAATTCAATaGGAAGACATTTGGCCAATT +
Preference number: 4 (lower is better)
Translates to: HHNVIFLRKRSSWYSCKQEDLIQ*EDIWPI
Trigger: AATTGGCCAAATGTCTTCCCATTGAATTAAATCCTC...CTGTTTACATGAATACCAGCTACTCCTTTTTCTAAGGAAAATTACATTGTGGTG
34% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000035606.10
CDS TCA 90 bp GTGAGAAGAGAAGAGTCCTTGAGCCATCGGCCTTGGATCACCATCTaGATCAGGTGGGTGATATTCAGGACGGTCACTAGCCATCCCTGG +
Preference number: 5 (lower is better)
Translates to: VRREESLSHRPWITI*IRWVIFRTVTSHPW
Trigger: CCAGGGATGGCTAGTGACCGTCCTGAATATCACCCACCTGATTCAGATGGTGATCCAAGGCCGATGGCTCAAGGACTCTTCTCTTCTCAC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000035606.10
CDS GCA 90 bp TGCTCGCATGCGCACATAGAGGTAAGTGTAACTCATCCACCTCACTaGCTCTTCCACGTTGGTGACTGTCCCCAGCGCAATCTCTGCATT +
Preference number: 5 (lower is better)
Translates to: CSHAHIEVSVTHPPH*LFHVGDCPQRNLCI
Trigger: AATGCAGAGATTGCGCTGGGGACAGTCACCAACGTGGAAGAGGCAGTGAGGTGGATGAGTTACACTTACCTCTATGTGCGCATGCGAGCA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000035606.10
CDS TCA 90 bp CTCGATGCTTCCTTAGTGTTGGGTCAATCTGGTACGCTTTGTGACTaGTGCCGTATGCTAGCGGGTTTGCTCGCATGCGCACATAGAGGT +
Preference number: 5 (lower is better)
Translates to: LDASLVLGQSGTLCD*CRMLAGLLACAHRG
Trigger: ACCTCTATGTGCGCATGCGAGCAAACCCGCTAGCATACGGCATCAGTCACAAAGCGTACCAGATTGACCCAACACTAAGGAAGCATCGAG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000035606.10
CDS TCA 90 bp TTTTGGTATCAGTATCATAATCTGGGCAGGGCAGCATGGCTCGGCTaGGATGCGCTTGAAGCAAGAGATGGGCTTTGGTGTGAGGGCTGT +
Preference number: 5 (lower is better)
Translates to: FWYQYHNLGRAAWLG*DALEARDGLWCEGC
Trigger: ACAGCCCTCACACCAAAGCCCATCTCTTGCTTCAAGCGCATCTCAGCCGAGCCATGCTGCCCTGCCCAGATTATGATACTGATACCAAAA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000035606.10
CDS GCA 90 bp TCATACTCTGTGTGGATTCAACCTGCCGTAAGGTCCTGGCGACTATaGTTTCTAGCACTGGGCCTCTGTCTTCATGCAGCAAGTGCACCT +
Preference number: 5 (lower is better)
Translates to: SYSVWIQPAVRSWRL*FLALGLCLHAASAP
Trigger: AGGTGCACTTGCTGCATGAAGACAGAGGCCCAGTGCTAGAAAGCATAGTCGCCAGGACCTTACGGCAGGTTGAATCCACACAGAGTATGA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000035606.10
CDS CCA 90 bp TTCTCTACCATGGAGCTGAACACATGGTCCTTCCCTTCACAGGCATaGATCAGCTCAGGAAGGCACTCAATGGATGTTCGGCACTTAGCA +
Preference number: 5 (lower is better)
Translates to: FSTMELNTWSFPSQA*ISSGRHSMDVRHLA
Trigger: TGCTAAGTGCCGAACATCCATTGAGTGCCTTCCTGAGCTGATCCATGCCTGTGAAGGGAAGGACCATGTGTTCAGCTCCATGGTAGAGAA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000035606.10
CDS TCA 90 bp AGAGGTAAGTGTAACTCATCCACCTCACTGCCTCTTCCACGTTGGTaGCTGTCCCCAGCGCAATCTCTGCATTTAGGTTATCTGCAAGAC +
Preference number: 5 (lower is better)
Translates to: RGKCNSSTSLPLPRW*LSPAQSLHLGYLQD
Trigger: GTCTTGCAGATAACCTAAATGCAGAGATTGCGCTGGGGACAGTCACCAACGTGGAAGAGGCAGTGAGGTGGATGAGTTACACTTACCTCT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000035606.10
CDS TCA 90 bp TCCATGAACCTGGTCATTCCAAGAGAAATCAGGGTGGATGTTCAGTaGTACTCGGAGGACAGTCCGTGTGATGGGCTGAATGGAAGCTTC +
Preference number: 5 (lower is better)
Translates to: SMNLVIPREIRVDVQ*YSEDSPCDGLNGSF
Trigger: GAAGCTTCCATTCAGCCCATCACACGGACTGTCCTCCGAGTATCACTGAACATCCACCCTGATTTCTCTTGGAATGACCAGGTTCATGGA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000035606.10
CDS TCA 90 bp TTTCCTGATCCGGTGGGGGCGCCAAGCAGAACATTACAGTCTGTGTaGTACAGTGTGTGGAATATCTGCGTCTGTACAGGGTTAAAGTGG +
Preference number: 5 (lower is better)
Translates to: FPDPVGAPSRTLQSV*YSVWNICVCTGLKW
Trigger: CCACTTTAACCCTGTACAGACGCAGATATTCCACACACTGTATCACACAGACTGTAATGTTCTGCTTGGCGCCCCCACCGGATCAGGAAA
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000035606.10
CDS GCA 90 bp AAGGTCCTGGCGACTATGCTTTCTAGCACTGGGCCTCTGTCTTCATaGAGCAAGTGCACCTCGTCAAGAATCAGGAGTTTTACGATTTGG +
Preference number: 5 (lower is better)
Translates to: KVLATMLSSTGPLSS*SKCTSSRIRSFTIW
Trigger: CCAAATCGTAAAACTCCTGATTCTTGACGAGGTGCACTTGCTGCATGAAGACAGAGGCCCAGTGCTAGAAAGCATAGTCGCCAGGACCTT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000035606.10
CDS CCA 90 bp GTTTTTGCAGGCTGTAACTCTTTCTCTACCATGGAGCTGAACACATaGTCCTTCCCTTCACAGGCATGGATCAGCTCAGGAAGGCACTCA +
Preference number: 5 (lower is better)
Translates to: VFAGCNSFSTMELNT*SFPSQAWISSGRHS
Trigger: TGAGTGCCTTCCTGAGCTGATCCATGCCTGTGAAGGGAAGGACCATGTGTTCAGCTCCATGGTAGAGAAAGAGTTACAGCCTGCAAAAAC
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000035606.10
CDS-3UTR CAA 90 bp CGTTGCTGGAATCATCACTGCAGCCGCTGTCAATTTCCTAGTTGGTTTGAGGTTTCGGCTGAGATGCGCTaGAAGCAAGAGATGGGCTTT +
Preference number: 5 (lower is better)
Translates to: RCWNHHCSRCQFPSWFEVSAEMR*KQEMGF
Trigger: AAAGCCCATCTCTTGCTTCAAGCGCATCTCAGCCGA...AACCTCAAACCAACTAGGAAATTGACAGCGGCTGCAGTGATGATTCCAGCAACG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000035606.10
CDS-3UTR CAA 90 bp CGTTGCTGGAATCATCACTGCAGCCGCTGTCAATTTCCTAGTTGGTTTGAGGTTCTTGAGCCATCGGCCTaGGATCACCATCTGAATCAG +
Preference number: 5 (lower is better)
Translates to: RCWNHHCSRCQFPSWFEVLEPSA*DHHLNQ
Trigger: CTGATTCAGATGGTGATCCAAGGCCGATGGCTCAAG...AACCTCAAACCAACTAGGAAATTGACAGCGGCTGCAGTGATGATTCCAGCAACG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000035606.10
CDS-3UTR CAA 90 bp GCAGCCGCTGTCAATTTCCTAGTTGGTTTGAGGTTTGAAGTTGATTCTGTCAAGCCCAAATTTGTCAAATaGCGGTCGTCCAGCTCGGCC +
Preference number: 5 (lower is better)
Translates to: AAAVNFLVGLRFEVDSVKPKFVK*RSSSSA
Trigger: GGCCGAGCTGGACGACCGCAATTTGACAAATTTGGG...CTTGACAGAATCAACTTCAAACCTCAAACCAACTAGGAAATTGACAGCGGCTGC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000035606.10
CDS-3UTR CAA 90 bp CTTGTTCACATGACTGAACAGTCAAGACTCTCAGCCTCTGGTCAAATGGCCTGTCTGCATCACTCAGAATaGACAGCAGTTCCTCAGTGC +
Preference number: 5 (lower is better)
Translates to: LVHMTEQSRLSASGQMACLHHSE*TAVPQC
Trigger: GCACTGAGGAACTGCTGTCAATTCTGAGTGATGCAG...ACAGGCCATTTGACCAGAGGCTGAGAGTCTTGACTGTTCAGTCATGTGAACAAG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000035606.10
CDS TCA 90 bp GTAGGATCTTCTACCCAAATCCACCATGGTTCCCCCACTGTTCCATaGACCTGGTCATTCCAAGAGAAATCAGGGTGGATGTTCAGTGAT +
Preference number: 5 (lower is better)
Translates to: VGSSTQIHHGSPTVP*TWSFQEKSGWMFSD
Trigger: ATCACTGAACATCCACCCTGATTTCTCTTGGAATGACCAGGTTCATGGAACAGTGGGGGAACCATGGTGGATTTGGGTAGAAGATCCTAC
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000035606.10
CDS TCA 90 bp TCCTGGGAAACCCTGAATGTGAACTTCCAGTGGAACTGGGCGAACTaGTGGTCGGAAGTTAAACAAACCCATCTGCTTAATGTTGAGCCA +
Preference number: 5 (lower is better)
Translates to: SWETLNVNFQWNWAN*WSEVKQTHLLNVEP
Trigger: TGGCTCAACATTAAGCAGATGGGTTTGTTTAACTTCCGACCATCAGTTCGCCCAGTTCCACTGGAAGTTCACATTCAGGGTTTCCCAGGA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000035606.10
CDS CCA 90 bp GTCAGTGGTTCAATGGTGCGATTATCCTCTCCAACTTCAATGCAGTaGGAAAGCTCCAATTCAACCAGAGACTGCCCAATCAGATGTGAC +
Preference number: 5 (lower is better)
Translates to: VSGSMVRLSSPTSMQ*ESSNSTRDCPIRCD
Trigger: GTCACATCTGATTGGGCAGTCTCTGGTTGAATTGGAGCTTTCCCACTGCATTGAAGTTGGAGAGGATAATCGCACCATTGAACCACTGAC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000035606.10
CDS CCA 90 bp TGGCTTCCATTTCCTGAAAAGGTGAAGGTGGTGCTGCTCTATGTTTaGTATTGTGAGAAGAGAAGAGTCCTTGAGCCATCGGCCTTGGAT +
Preference number: 5 (lower is better)
Translates to: WLPFPEKVKVVLLYV*YCEKRRVLEPSALD
Trigger: ATCCAAGGCCGATGGCTCAAGGACTCTTCTCTTCTCACAATACCAAACATAGAGCAGCACCACCTTCACCTTTTCAGGAAATGGAAGCCA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000035606.10
CDS-3UTR CAA 90 bp AAACTCATAAATCTGTTACAAAAGGCAGCAGTTTCTAAAAGGCCTCTGTGGCTAACTGCCTCTTCCACGTaGGTGACTGTCCCCAGCGCA +
Preference number: 5 (lower is better)
Translates to: KLINLLQKAAVSKRPLWLTASST*VTVPSA
Trigger: TGCGCTGGGGACAGTCACCAACGTGGAAGAGGCAGT...TAGCCACAGAGGCCTTTTAGAAACTGCTGCCTTTTGTAACAGATTTATGAGTTT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000035606.10
CDS GCA 90 bp CACATGTCAGTGGTTCAATGGTGCGATTATCCTCTCCAACTTCAATaGAGTGGGAAAGCTCCAATTCAACCAGAGACTGCCCAATCAGAT +
Preference number: 5 (lower is better)
Translates to: HMSVVQWCDYPLQLQ*SGKAPIQPETAQSD
Trigger: ATCTGATTGGGCAGTCTCTGGTTGAATTGGAGCTTTCCCACTGCATTGAAGTTGGAGAGGATAATCGCACCATTGAACCACTGACATGTG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000035606.10
CDS CCA 90 bp ACTTCTAATTGCCTGAAATGCAGGCTTGTTCATACTAGCCATGCGTaGGCAGTAATGTTGTCCTGGGAAACCCTGAATGTGAACTTCCAG +
Preference number: 5 (lower is better)
Translates to: TSNCLKCRLVHTSHA*AVMLSWETLNVNFQ
Trigger: CTGGAAGTTCACATTCAGGGTTTCCCAGGACAACATTACTGCCCACGCATGGCTAGTATGAACAAGCCTGCATTTCAGGCAATTAGAAGT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000035606.10
CDS-3UTR CAA 90 bp GGAATCATCACTGCAGCCGCTGTCAATTTCCTAGTTGGTTTGAGGTTTGAAGTTAACCAAATTTCTGTCTaGCCGAAGCATCCCGGCATG +
Preference number: 5 (lower is better)
Translates to: GIITAAAVNFLVGLRFEVNQISV*PKHPGM
Trigger: CATGCCGGGATGCTTCGGCAAGACAGAAATTTGGTT...AACTTCAAACCTCAAACCAACTAGGAAATTGACAGCGGCTGCAGTGATGATTCC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000035606.10
CDS-3UTR CAA 90 bp GCTGGAATCATCACTGCAGCCGCTGTCAATTTCCTAGTTGGTTTGAGGTTTGAAAGAGTCAGCTTGAGGTaGGAATCTCGTACTGTTCCA +
Preference number: 5 (lower is better)
Translates to: AGIITAAAVNFLVGLRFERVSLR*ESRTVP
Trigger: TGGAACAGTACGAGATTCCAACCTCAAGCTGACTCT...TTCAAACCTCAAACCAACTAGGAAATTGACAGCGGCTGCAGTGATGATTCCAGC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000035606.10
CDS-3UTR CAA 90 bp CGTTGCTGGAATCATCACTGCAGCCGCTGTCAATTTCCTAGTTGGTTTGAGGTTTCTCATGTTTTCCCTTaGGAAGCCCAAAATGGACTC +
Preference number: 5 (lower is better)
Translates to: RCWNHHCSRCQFPSWFEVSHVFP*EAQNGL
Trigger: GAGTCCATTTTGGGCTTCCAAAGGGAAAACATGAGA...AACCTCAAACCAACTAGGAAATTGACAGCGGCTGCAGTGATGATTCCAGCAACG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000035606.10
CDS CCA 90 bp TCGCTCGAGGAATTAAGGAACCGATCTACAATTGTAATTCTGTTCTaGAGCAGCTTCTCAATCAGATCCAGTCCTTCAGGTCCCAGCAAT +
Preference number: 5 (lower is better)
Translates to: SLEELRNRSTIVILF*SSFSIRSSPSGPSN
Trigger: ATTGCTGGGACCTGAAGGACTGGATCTGATTGAGAAGCTGCTCCAGAACAGAATTACAATTGTAGATCGGTTCCTTAATTCCTCGAGCGA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000035606.10
ENSMUST00000220355.2
CDS-3UTR CAA 90 bp GGAATCATCACTGCAGCCGCTGTCAATTTCCTAGTTGGTTTGAGGTTTGAAGTTCTGCCAAGGCTTTCATaGGAGCGACATACACAATCT +
Preference number: 5 (lower is better)
Translates to: GIITAAAVNFLVGLRFEVLPRLS*ERHTQS
Trigger: AGATTGTGTATGTCGCTCCAATGAAAGCCTTGGCAG...AACTTCAAACCTCAAACCAACTAGGAAATTGACAGCGGCTGCAGTGATGATTCC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000035606.10
CDS-3UTR CAA 90 bp CTTGTTCACATGACTGAACAGTCAAGACTCTCAGCCTCTGGTCAAATGGCCTGTCAACCCCAGAGTCTCTaGTCAATGACTTTACTAAGA +
Preference number: 5 (lower is better)
Translates to: LVHMTEQSRLSASGQMACQPQSL*SMTLLR
Trigger: TCTTAGTAAAGTCATTGACAAGAGACTCTGGGGTTG...ACAGGCCATTTGACCAGAGGCTGAGAGTCTTGACTGTTCAGTCATGTGAACAAG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000035606.10
CDS-3UTR CAA 90 bp CGTTGCTGGAATCATCACTGCAGCCGCTGTCAATTTCCTAGTTGGTTTGAGGTTAGAGCTTCATATGCTTaGCACCCCAAAGCTGTAATT +
Preference number: 5 (lower is better)
Translates to: RCWNHHCSRCQFPSWFEVRASYA*HPKAVI
Trigger: AATTACAGCTTTGGGGTGCAAAGCATATGAAGCTCT...AACCTCAAACCAACTAGGAAATTGACAGCGGCTGCAGTGATGATTCCAGCAACG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000035606.10
CDS TCA 90 bp CAAATTTGTCAAATTGCGGTCGTCCAGCTCGGCCAAATATCTGCATaGCATCTAAAATTCCAAGGTCAACAAAGGAGCCTCTTTTGGCAG +
Preference number: 5 (lower is better)
Translates to: QICQIAVVQLGQISA*HLKFQGQQRSLFWQ
Trigger: CTGCCAAAAGAGGCTCCTTTGTTGACCTTGGAATTTTAGATGTCATGCAGATATTTGGCCGAGCTGGACGACCGCAATTTGACAAATTTG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000035606.10
CDS TCA 90 bp AACAGCTCTTCTACAGTTTTTCGGTCTCTTTCATGCAGGCCAGCATaGTGCATTCCTATTCCAAAAGCTAGAGTCAGCTTGAGGTTGGAA +
Preference number: 5 (lower is better)
Translates to: NSSSTVFRSLSCRPA*CIPIPKARVSLRLE
Trigger: TTCCAACCTCAAGCTGACTCTAGCTTTTGGAATAGGAATGCATCATGCTGGCCTGCATGAAAGAGACCGAAAAACTGTAGAAGAGCTGTT
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000035606.10
CDS GCA 90 bp CATGTAACCAACAGAGTCCGTCATGTGAAATGTCATAAAGAGAAATaGAGCCCCACTCTCAATTGCTTCTCTCCCATTATCCGTTCCAAC +
Preference number: 5 (lower is better)
Translates to: HVTNRVRHVKCHKEK*SPTLNCFSPIIRSN
Trigger: GTTGGAACGGATAATGGGAGAGAAGCAATTGAGAGTGGGGCTGCATTTCTCTTTATGACATTTCACATGACGGACTCTGTTGGTTACATG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000035606.10
ENSMUST00000220355.2
CDS CCA 90 bp TCATGCAGCAAGTGCACCTCGTCAAGAATCAGGAGTTTTACGATTTaGGAAAGAGCAACATCCCCAACACTCTTTCTTGTTACTACATCC +
Preference number: 5 (lower is better)
Translates to: SCSKCTSSRIRSFTI*ERATSPTLFLVTTS
Trigger: GGATGTAGTAACAAGAAAGAGTGTTGGGGATGTTGCTCTTTCCCAAATCGTAAAACTCCTGATTCTTGACGAGGTGCACTTGCTGCATGA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000035606.10
CDS CCA 90 bp ATAGCTTCTATTCTGCCAGCTTCGACTAACTCCATCCCACTTTTCTaGTGTGGTGACAATAAGGTCAGCCTTAGCAATGGATTTCATGTC +
Preference number: 5 (lower is better)
Translates to: IASILPASTNSIPLF*CGDNKVSLSNGFHV
Trigger: GACATGAAATCCATTGCTAAGGCTGACCTTATTGTCACCACACCAGAAAAGTGGGATGGAGTTAGTCGAAGCTGGCAGAATAGAAGCTAT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000035606.10
CDS CCA 90 bp TCAAATAGTAATAGGAGGCAATTCGACCACATGTCAGTGGTTCAATaGTGCGATTATCCTCTCCAACTTCAATGCAGTGGGAAAGCTCCA +
Preference number: 5 (lower is better)
Translates to: SNSNRRQFDHMSVVQ*CDYPLQLQCSGKAP
Trigger: TGGAGCTTTCCCACTGCATTGAAGTTGGAGAGGATAATCGCACCATTGAACCACTGACATGTGGTCGAATTGCCTCCTATTACTATTTGA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000035606.10
CDS-3UTR CAA 90 bp CGTTGCTGGAATCATCACTGCAGCCGCTGTCAATTTCCTAGTTGGTTTGAGGTTAAAGATCTTCAACTCTaGCTGCTTCAGTCATTTCCT +
Preference number: 5 (lower is better)
Translates to: RCWNHHCSRCQFPSWFEVKDLQL*LLQSFP
Trigger: AGGAAATGACTGAAGCAGCAAGAGTTGAAGATCTTT...AACCTCAAACCAACTAGGAAATTGACAGCGGCTGCAGTGATGATTCCAGCAACG
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000035606.10
CDS-3UTR CAA 90 bp CGTTGCTGGAATCATCACTGCAGCCGCTGTCAATTTCCTAGTTGGTTTGAGGTTCCCCAACACTCTTTCTaGTTACTACATCCCATTTTT +
Preference number: 5 (lower is better)
Translates to: RCWNHHCSRCQFPSWFEVPQHSF*LLHPIF
Trigger: AAAAATGGGATGTAGTAACAAGAAAGAGTGTTGGGG...AACCTCAAACCAACTAGGAAATTGACAGCGGCTGCAGTGATGATTCCAGCAACG
44% GC, longest homopolymer 5 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000035606.10
CDS-3UTR CAA 90 bp GTTGCTGGAATCATCACTGCAGCCGCTGTCAATTTCCTAGTTGGTTTGAGGTTTGTGTCCAGCCTTTACTaGTTTCAGAACACTTTCGTA +
Preference number: 5 (lower is better)
Translates to: VAGIITAAAVNFLVGLRFVSSLY*FQNTFV
Trigger: TACGAAAGTGTTCTGAAACAAGTAAAGGCTGGACAC...AAACCTCAAACCAACTAGGAAATTGACAGCGGCTGCAGTGATGATTCCAGCAAC
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000035606.10
CDS-3UTR CAA 90 bp GGTAGACACCAAGTAATTCGACTTGTTCACATGACTGAACAGTCAAGACTCTCAGTCCTTACAGTGGCATaGCGAGCATGTACAAATACC +
Preference number: 5 (lower is better)
Translates to: GRHQVIRLVHMTEQSRLSVLTVA*RACTNT
Trigger: GGTATTTGTACATGCTCGCAATGCCACTGTAAGGAC...TGAGAGTCTTGACTGTTCAGTCATGTGAACAAGTCGAATTACTTGGTGTCTACC
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000035606.10
CDS-3UTR CAA 90 bp GTTGCTGGAATCATCACTGCAGCCGCTGTCAATTTCCTAGTTGGTTTGAGGTTTTCACGTACTAGAGCTTaGAGGGGTGCAATATATACT +
Preference number: 5 (lower is better)
Translates to: VAGIITAAAVNFLVGLRFSRTRA*RGAIYT
Trigger: AGTATATATTGCACCCCTCAAAGCTCTAGTACGTGA...AAACCTCAAACCAACTAGGAAATTGACAGCGGCTGCAGTGATGATTCCAGCAAC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000035606.10
CDS-3UTR CAA 90 bp GGAATCATCACTGCAGCCGCTGTCAATTTCCTAGTTGGTTTGAGGTTTGAAGTTAAAGCTAGAGTCAGCTaGAGGTTGGAATCTCGTACT +
Preference number: 5 (lower is better)
Translates to: GIITAAAVNFLVGLRFEVKARVS*RLESRT
Trigger: AGTACGAGATTCCAACCTCAAGCTGACTCTAGCTTT...AACTTCAAACCTCAAACCAACTAGGAAATTGACAGCGGCTGCAGTGATGATTCC
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000035606.10
CDS-3UTR CAA 90 bp GTTGCTGGAATCATCACTGCAGCCGCTGTCAATTTCCTAGTTGGTTTGAGGTTTCCATTGCATCTTGCTTaGATGTTATTGTACCTCCAG +
Preference number: 5 (lower is better)
Translates to: VAGIITAAAVNFLVGLRFPLHLA*MLLYLQ
Trigger: CTGGAGGTACAATAACATCAAAGCAAGATGCAATGG...AAACCTCAAACCAACTAGGAAATTGACAGCGGCTGCAGTGATGATTCCAGCAAC
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000035606.10
CDS GCA 90 bp CGTCATGTGAAATGTCATAAAGAGAAATGCAGCCCCACTCTCAATTaGTTCTCTCCCATTATCCGTTCCAACGATTTGTTTTGCAGCTTG +
Preference number: 5 (lower is better)
Translates to: RHVKCHKEKCSPTLN*FSPIIRSNDLFCSL
Trigger: CAAGCTGCAAAACAAATCGTTGGAACGGATAATGGGAGAGAAGCAATTGAGAGTGGGGCTGCATTTCTCTTTATGACATTTCACATGACG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000035606.10
ENSMUST00000220355.2
CDS GCA 90 bp GTTCCAATGATGTTGTCCATCTCTTGCTCATCCATATTCAACCACTaGTTTGGGTCTTCTTCAGTGGCCAGAAATGCTATCAACTCTAAG +
Preference number: 5 (lower is better)
Translates to: VPMMLSISCSSIFNH*FGSSSVARNAINSK
Trigger: CTTAGAGTTGATAGCATTTCTGGCCACTGAAGAAGACCCAAAGCAGTGGTTGAATATGGATGAGCAAGAGATGGACAACATCATTGGAAC
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000035606.10
CDS GCA 90 bp AATAGTAATAGGAGGCAATTCGACCACATGTCAGTGGTTCAATGGTaGGATTATCCTCTCCAACTTCAATGCAGTGGGAAAGCTCCAATT +
Preference number: 5 (lower is better)
Translates to: NSNRRQFDHMSVVQW*DYPLQLQCSGKAPI
Trigger: AATTGGAGCTTTCCCACTGCATTGAAGTTGGAGAGGATAATCGCACCATTGAACCACTGACATGTGGTCGAATTGCCTCCTATTACTATT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000035606.10
CDS CCA 90 bp TTTGTGCTTCAAATAGTAATAGGAGGCAATTCGACCACATGTCAGTaGTTCAATGGTGCGATTATCCTCTCCAACTTCAATGCAGTGGGA +
Preference number: 5 (lower is better)
Translates to: FVLQIVIGGNSTTCQ*FNGAIILSNFNAVG
Trigger: TCCCACTGCATTGAAGTTGGAGAGGATAATCGCACCATTGAACCACTGACATGTGGTCGAATTGCCTCCTATTACTATTTGAAGCACAAA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000035606.10
CDS-3UTR CAA 90 bp GGAATCATCACTGCAGCCGCTGTCAATTTCCTAGTTGGTTTGAGGTTTGAAGTTACTTCCTCATACAGCTaGGTATTCTCTCTCTGGATT +
Preference number: 5 (lower is better)
Translates to: GIITAAAVNFLVGLRFEVTSSYS*VFSLWI
Trigger: AATCCAGAGAGAGAATACCAAGCTGTATGAGGAAGT...AACTTCAAACCTCAAACCAACTAGGAAATTGACAGCGGCTGCAGTGATGATTCC
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000035606.10
CDS-3UTR CAA 90 bp GCTGGAATCATCACTGCAGCCGCTGTCAATTTCCTAGTTGGTTTGAGGTTTGAAATATCACCCTCTGTTTaGTGTGCATCAAAGAGTTCA +
Preference number: 5 (lower is better)
Translates to: AGIITAAAVNFLVGLRFEISPSV*CASKSS
Trigger: TGAACTCTTTGATGCACACAAAACAGAGGGTGATAT...TTCAAACCTCAAACCAACTAGGAAATTGACAGCGGCTGCAGTGATGATTCCAGC
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000035606.10
CDS-3UTR CAA 90 bp CACATTTTCCAAGATCAGTGTGTGGTCTTTGAAAAATCATCATTGATCTCTGCAGCGTGGGCAGTAATGTaGTCCTGGGAAACCCTGAAT +
Preference number: 5 (lower is better)
Translates to: HIFQDQCVVFEKSSLISAAWAVM*SWETLN
Trigger: ATTCAGGGTTTCCCAGGACAACATTACTGCCCACGC...TGCAGAGATCAATGATGATTTTTCAAAGACCACACACTGATCTTGGAAAATGTG
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000035606.10
CDS-3UTR CAA 90 bp GTTGCTGGAATCATCACTGCAGCCGCTGTCAATTTCCTAGTTGGTTTGAGGTTTGGTTTCAAACGGTCCTaGAACATTTTGACAGTTTTG +
Preference number: 5 (lower is better)
Translates to: VAGIITAAAVNFLVGLRFGFKRS*NILTVL
Trigger: CAAAACTGTCAAAATGTTCAAGGACCGTTTGAAACC...AAACCTCAAACCAACTAGGAAATTGACAGCGGCTGCAGTGATGATTCCAGCAAC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000035606.10
CDS-3UTR CAA 90 bp GTTGCTGGAATCATCACTGCAGCCGCTGTCAATTTCCTAGTTGGTTTGAGGTTTGGGATTCACCATTTATaGGTAATTCATCAAAGTGGT +
Preference number: 5 (lower is better)
Translates to: VAGIITAAAVNFLVGLRFGIHHL*VIHQSG
Trigger: ACCACTTTGATGAATTACCAATAAATGGTGAATCCC...AAACCTCAAACCAACTAGGAAATTGACAGCGGCTGCAGTGATGATTCCAGCAAC
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000035606.10
CDS-3UTR CAA 90 bp GGTAGACACCAAGTAATTCGACTTGTTCACATGACTGAACAGTCAAGACTCTCAACAAAGGAGCCTCTTTaGGCAGCGTATATTTGTGTT +
Preference number: 5 (lower is better)
Translates to: GRHQVIRLVHMTEQSRLSTKEPL*AAYICV
Trigger: AACACAAATATACGCTGCCAAAAGAGGCTCCTTTGT...TGAGAGTCTTGACTGTTCAGTCATGTGAACAAGTCGAATTACTTGGTGTCTACC
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000035606.10
CDS-3UTR CAA 90 bp GGAATCATCACTGCAGCCGCTGTCAATTTCCTAGTTGGTTTGAGGTTTGAAGTTCGGTCCTTGAACATTTaGACAGTTTTGTGCTTCAAA +
Preference number: 5 (lower is better)
Translates to: GIITAAAVNFLVGLRFEVRSLNI*TVLCFK
Trigger: TTTGAAGCACAAAACTGTCAAAATGTTCAAGGACCG...AACTTCAAACCTCAAACCAACTAGGAAATTGACAGCGGCTGCAGTGATGATTCC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000035606.10
CDS-3UTR CAA 90 bp CACCACAATGTAATTTTCCTTAGAAAAAGGAGTAGCTGGTATTCATGTAAACAGAGAAGAGAAGAGTCCTaGAGCCATCGGCCTTGGATC +
Preference number: 5 (lower is better)
Translates to: HHNVIFLRKRSSWYSCKQRREES*SHRPWI
Trigger: GATCCAAGGCCGATGGCTCAAGGACTCTTCTCTTCT...CTGTTTACATGAATACCAGCTACTCCTTTTTCTAAGGAAAATTACATTGTGGTG
42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000035606.10
CDS TCA 90 bp AATAATTCTGTATGGGGAGGATGTCTCTCTGGTAGAATCAGATGTTaGAAGTTGATAATGCAAACAGCTTCAGCTCCTAGCCATCGATCA +
Preference number: 5 (lower is better)
Translates to: NNSVWGGCLSGRIRC*KLIMQTASAPSHRS
Trigger: TGATCGATGGCTAGGAGCTGAAGCTGTTTGCATTATCAACTTTCAACATCTGATTCTACCAGAGAGACATCCTCCCCATACAGAATTATT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000035606.10
CDS CCA 90 bp GGGCTTTGGTGTGAGGGCTGTCAAATGAATGAGGATTTAATTCAATaGGAAGACATTTGGCCAATTCATTATTCGTATGGTCCTCATTGT +
Preference number: 5 (lower is better)
Translates to: GLWCEGCQMNEDLIQ*EDIWPIHYSYGPHC
Trigger: ACAATGAGGACCATACGAATAATGAATTGGCCAAATGTCTTCCCATTGAATTAAATCCTCATTCATTTGACAGCCCTCACACCAAAGCCC
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000035606.10
CDS-3UTR CAA 90 bp TGGAAGGAGCACTCTATATACTTTATTTCCACCAGTTACAGTGTTCACATTTTCTATTCAACCACTGCTTaGGGTCTTCTTCAGTGGCCA +
Preference number: 5 (lower is better)
Translates to: WKEHSIYFISTSYSVHIFYSTTA*GLLQWP
Trigger: TGGCCACTGAAGAAGACCCAAAGCAGTGGTTGAATA...GAAAATGTGAACACTGTAACTGGTGGAAATAAAGTATATAGAGTGCTCCTTCCA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000035606.10
CDS-3UTR CAA 90 bp GGTAGACACCAAGTAATTCGACTTGTTCACATGACTGAACAGTCAAGACTCTCAACACTCCTAATAAGCTaGATTCTACTGGGAAAGGTT +
Preference number: 5 (lower is better)
Translates to: GRHQVIRLVHMTEQSRLSTLLIS*ILLGKV
Trigger: AACCTTTCCCAGTAGAATCAAGCTTATTAGGAGTGT...TGAGAGTCTTGACTGTTCAGTCATGTGAACAAGTCGAATTACTTGGTGTCTACC
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000035606.10
CDS GCA 90 bp TTATCGTGGGTTGTTATAATGATTCCTTCCCCAAATTTGTCAAATTaGGGTCGTCCAGCTCGGCCAAATATCTGCATGACATCTAAAATT +
Preference number: 5 (lower is better)
Translates to: LSWVVIMIPSPNLSN*GRPARPNICMTSKI
Trigger: AATTTTAGATGTCATGCAGATATTTGGCCGAGCTGGACGACCGCAATTTGACAAATTTGGGGAAGGAATCATTATAACAACCCACGATAA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000035606.10
CDS CCA 90 bp TCTTGCTTTGATGTTATTGTACCTCCAGCAATCTCTGCATTTAAGTaGTCAGACAACACTCCTAATAAGCTTGATTCTACTGGGAAAGGT +
Preference number: 5 (lower is better)
Translates to: SCFDVIVPPAISAFK*SDNTPNKLDSTGKG
Trigger: ACCTTTCCCAGTAGAATCAAGCTTATTAGGAGTGTTGTCTGACCACTTAAATGCAGAGATTGCTGGAGGTACAATAACATCAAAGCAAGA
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000035606.10
CDS-3UTR CAA 90 bp GGTAGACACCAAGTAATTCGACTTGTTCACATGACTGAACAGTCAAGACTCTCACTTTTTAATAACACCTaGATGAAAGTGTTGGCGGAT +
Preference number: 5 (lower is better)
Translates to: GRHQVIRLVHMTEQSRLSLFNNT*MKVLAD
Trigger: ATCCGCCAACACTTTCATCAAGGTGTTATTAAAAAG...TGAGAGTCTTGACTGTTCAGTCATGTGAACAAGTCGAATTACTTGGTGTCTACC
40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000035606.10
CDS-3UTR CAA 90 bp CACCACAATGTAATTTTCCTTAGAAAAAGGAGTAGCTGGTATTCATGTAAACAGCAGGAGTTTTACGATTaGGGAAAGAGCAACATCCCC +
Preference number: 5 (lower is better)
Translates to: HHNVIFLRKRSSWYSCKQQEFYD*GKSNIP
Trigger: GGGGATGTTGCTCTTTCCCAAATCGTAAAACTCCTG...CTGTTTACATGAATACCAGCTACTCCTTTTTCTAAGGAAAATTACATTGTGGTG
40% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000035606.10
CDS-3UTR CAA 90 bp AAACTCATAAATCTGTTACAAAAGGCAGCAGTTTCTAAAAGGCCTCTGTGGCTACTTGCTTTGATGTTATaGTACCTCCAGCAATCTCTG +
Preference number: 5 (lower is better)
Translates to: KLINLLQKAAVSKRPLWLLALML*YLQQSL
Trigger: CAGAGATTGCTGGAGGTACAATAACATCAAAGCAAG...TAGCCACAGAGGCCTTTTAGAAACTGCTGCCTTTTGTAACAGATTTATGAGTTT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000035606.10
CDS-3UTR CAA 90 bp CACATTTTCCAAGATCAGTGTGTGGTCTTTGAAAAATCATCATTGATCTCTGCATTGTTTTCATCCCGTTaGTCTGCTGTCAGAGTTGAG +
Preference number: 5 (lower is better)
Translates to: HIFQDQCVVFEKSSLISALFSSR*SAVRVE
Trigger: CTCAACTCTGACAGCAGACAAACGGGATGAAAACAA...TGCAGAGATCAATGATGATTTTTCAAAGACCACACACTGATCTTGGAAAATGTG
40% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000035606.10
CDS CCA 90 bp GAGGGCTGTCAAATGAATGAGGATTTAATTCAATGGGAAGACATTTaGCCAATTCATTATTCGTATGGTCCTCATTGTGTCTTACTGGTA +
Preference number: 5 (lower is better)
Translates to: EGCQMNEDLIQWEDI*PIHYSYGPHCVLLV
Trigger: TACCAGTAAGACACAATGAGGACCATACGAATAATGAATTGGCCAAATGTCTTCCCATTGAATTAAATCCTCATTCATTTGACAGCCCTC
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000035606.10
CDS-3UTR CAA 90 bp CACCACAATGTAATTTTCCTTAGAAAAAGGAGTAGCTGGTATTCATGTAAACAGATTCCTTCCCCAAATTaGTCAAATTGCGGTCGTCCA +
Preference number: 5 (lower is better)
Translates to: HHNVIFLRKRSSWYSCKQIPSPN*SNCGRP
Trigger: TGGACGACCGCAATTTGACAAATTTGGGGAAGGAAT...CTGTTTACATGAATACCAGCTACTCCTTTTTCTAAGGAAAATTACATTGTGGTG
39% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000035606.10
CDS-3UTR CAA 90 bp CACATTTTCCAAGATCAGTGTGTGGTCTTTGAAAAATCATCATTGATCTCTGCACTCAATTGGGTTTTGTaGAGTGAGCAAACTGAGGTA +
Preference number: 5 (lower is better)
Translates to: HIFQDQCVVFEKSSLISALNWVL*SEQTEV
Trigger: TACCTCAGTTTGCTCACTCAACAAAACCCAATTGAG...TGCAGAGATCAATGATGATTTTTCAAAGACCACACACTGATCTTGGAAAATGTG
39% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000035606.10
CDS-3UTR CAA 90 bp GAACAGGATGCACTTTATACAGGTAGCAAATCACCAAAGAGTAAACTTAACAAAACTCTCAATTGGGTTTaGTTGAGTGAGCAAACTGAG +
Preference number: 5 (lower is better)
Translates to: EQDALYTGSKSPKSKLNKTLNWV*LSEQTE
Trigger: CTCAGTTTGCTCACTCAACAAAACCCAATTGAGAGT...TTTGTTAAGTTTACTCTTTGGTGATTTGCTACCTGTATAAAGTGCATCCTGTTC
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000035606.10
CDS-3UTR CAA 90 bp GAACAGGATGCACTTTATACAGGTAGCAAATCACCAAAGAGTAAACTTAACAAATGTCTGCTGTCAGAGTaGAGATGGAGAGTTCATTAT +
Preference number: 5 (lower is better)
Translates to: EQDALYTGSKSPKSKLNKCLLSE*RWRVHY
Trigger: ATAATGAACTCTCCATCTCAACTCTGACAGCAGACA...TTTGTTAAGTTTACTCTTTGGTGATTTGCTACCTGTATAAAGTGCATCCTGTTC
38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000035606.10
CDS-3UTR CAA 90 bp TGGAAGGAGCACTCTATATACTTTATTTCCACCAGTTACAGTGTTCACATTTTCGTCGTGTTTGACGTCTaGATGAGACAAATATCAAAA +
Preference number: 5 (lower is better)
Translates to: WKEHSIYFISTSYSVHIFVVFDV*MRQISK
Trigger: TTTTGATATTTGTCTCATCAAGACGTCAAACACGAC...GAAAATGTGAACACTGTAACTGGTGGAAATAAAGTATATAGAGTGCTCCTTCCA
37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000035606.10
CDS-3UTR CAA 90 bp CACCACAATGTAATTTTCCTTAGAAAAAGGAGTAGCTGGTATTCATGTAAACAGTGCTTTATCCAACTTTaGTCCAACTTCAATAAGGAG +
Preference number: 5 (lower is better)
Translates to: HHNVIFLRKRSSWYSCKQCFIQL*SNFNKE
Trigger: CTCCTTATTGAAGTTGGACAAAAGTTGGATAAAGCA...CTGTTTACATGAATACCAGCTACTCCTTTTTCTAAGGAAAATTACATTGTGGTG
36% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000035606.10
CDS TCA 72 bp GCCATCGGCCTTGGATCACCATCTGAATCAGGTGGGTaGTATTCAGGACGGTCACTAGCCATCCCTGGCTTG +
Preference number: 6 (lower is better)
Translates to: AIGLGSPSESGG*YSGRSLAIPGL
Trigger: CAAGCCAGGGATGGCTAGTGACCGTCCTGAATATCACCCACCTGATTCAGATGGTGATCCAAGGCCGATGGC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000035606.10
CDS CCA 72 bp AGGTGGGTGATATTCAGGACGGTCACTAGCCATCCCTaGCTTGCAGCCACATCCAGCATTGCCTGGCATACT +
Preference number: 6 (lower is better)
Translates to: RWVIFRTVTSHP*LAATSSIAWHT
Trigger: AGTATGCCAGGCAATGCTGGATGTGGCTGCAAGCCAGGGATGGCTAGTGACCGTCCTGAATATCACCCACCT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000035606.10
CDS TCA 72 bp CCGGTGGGGGCGCCAAGCAGAACATTACAGTCTGTGTaGTACAGTGTGTGGAATATCTGCGTCTGTACAGGG +
Preference number: 6 (lower is better)
Translates to: PVGAPSRTLQSV*YSVWNICVCTG
Trigger: CCCTGTACAGACGCAGATATTCCACACACTGTATCACACAGACTGTAATGTTCTGCTTGGCGCCCCCACCGG
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000035606.10
CDS TCA 72 bp CAGTATCATAATCTGGGCAGGGCAGCATGGCTCGGCTaGGATGCGCTTGAAGCAAGAGATGGGCTTTGGTGT +
Preference number: 6 (lower is better)
Translates to: QYHNLGRAAWLG*DALEARDGLWC
Trigger: ACACCAAAGCCCATCTCTTGCTTCAAGCGCATCTCAGCCGAGCCATGCTGCCCTGCCCAGATTATGATACTG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000035606.10
CDS GCA 72 bp GTGTGGATTCAACCTGCCGTAAGGTCCTGGCGACTATaGTTTCTAGCACTGGGCCTCTGTCTTCATGCAGCA +
Preference number: 6 (lower is better)
Translates to: VWIQPAVRSWRL*FLALGLCLHAA
Trigger: TGCTGCATGAAGACAGAGGCCCAGTGCTAGAAAGCATAGTCGCCAGGACCTTACGGCAGGTTGAATCCACAC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000035606.10
CDS GCA 72 bp GCGCACATAGAGGTAAGTGTAACTCATCCACCTCACTaGCTCTTCCACGTTGGTGACTGTCCCCAGCGCAAT +
Preference number: 6 (lower is better)
Translates to: AHIEVSVTHPPH*LFHVGDCPQRN
Trigger: ATTGCGCTGGGGACAGTCACCAACGTGGAAGAGGCAGTGAGGTGGATGAGTTACACTTACCTCTATGTGCGC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000035606.10
CDS CCA 72 bp ATGGAGCTGAACACATGGTCCTTCCCTTCACAGGCATaGATCAGCTCAGGAAGGCACTCAATGGATGTTCGG +
Preference number: 6 (lower is better)
Translates to: MELNTWSFPSQA*ISSGRHSMDVR
Trigger: CCGAACATCCATTGAGTGCCTTCCTGAGCTGATCCATGCCTGTGAAGGGAAGGACCATGTGTTCAGCTCCAT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000035606.10
CDS CAA 90 bp CTGAAATGCAGGCTTGTTCATACTAGCCATGCGTGGGCAGTAATGTaGTCCTGGGAAACCCTGAATGTGAACTTCCAGTGGAACTGGGCG +
Preference number: 6 (lower is better)
Translates to: LKCRLVHTSHAWAVM*SWETLNVNFQWNWA
Trigger: CGCCCAGTTCCACTGGAAGTTCACATTCAGGGTTTCCCAGGACAACATTACTGCCCACGCATGGCTAGTATGAACAAGCCTGCATTTCAG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000035606.10
CDS TCA 72 bp TGCTTCCTTAGTGTTGGGTCAATCTGGTACGCTTTGTaGCTGATGCCGTATGCTAGCGGGTTTGCTCGCATG +
Preference number: 6 (lower is better)
Translates to: CFLSVGSIWYAL*LMPYASGFARM
Trigger: CATGCGAGCAAACCCGCTAGCATACGGCATCAGTCACAAAGCGTACCAGATTGACCCAACACTAAGGAAGCA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000035606.10
CDS CCA 72 bp TCATACTCTGTGTGGATTCAACCTGCCGTAAGGTCCTaGCGACTATGCTTTCTAGCACTGGGCCTCTGTCTT +
Preference number: 6 (lower is better)
Translates to: SYSVWIQPAVRS*RLCFLALGLCL
Trigger: AAGACAGAGGCCCAGTGCTAGAAAGCATAGTCGCCAGGACCTTACGGCAGGTTGAATCCACACAGAGTATGA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000035606.10
CDS CCA 72 bp GGCTGTAACTCTTTCTCTACCATGGAGCTGAACACATaGTCCTTCCCTTCACAGGCATGGATCAGCTCAGGA +
Preference number: 6 (lower is better)
Translates to: GCNSFSTMELNT*SFPSQAWISSG
Trigger: TCCTGAGCTGATCCATGCCTGTGAAGGGAAGGACCATGTGTTCAGCTCCATGGTAGAGAAAGAGTTACAGCC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000035606.10
CDS TCA 72 bp TGTAACTCATCCACCTCACTGCCTCTTCCACGTTGGTaGCTGTCCCCAGCGCAATCTCTGCATTTAGGTTAT +
Preference number: 6 (lower is better)
Translates to: CNSSTSLPLPRW*LSPAQSLHLGY
Trigger: ATAACCTAAATGCAGAGATTGCGCTGGGGACAGTCACCAACGTGGAAGAGGCAGTGAGGTGGATGAGTTACA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000035606.10
CDS TCA 72 bp TCTACCCAAATCCACCATGGTTCCCCCACTGTTCCATaGACCTGGTCATTCCAAGAGAAATCAGGGTGGATG +
Preference number: 6 (lower is better)
Translates to: STQIHHGSPTVP*TWSFQEKSGWM
Trigger: CATCCACCCTGATTTCTCTTGGAATGACCAGGTTCATGGAACAGTGGGGGAACCATGGTGGATTTGGGTAGA
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000035606.10
CDS CCA 72 bp TGCCTGAAATGCAGGCTTGTTCATACTAGCCATGCGTaGGCAGTAATGTTGTCCTGGGAAACCCTGAATGTG +
Preference number: 6 (lower is better)
Translates to: CLKCRLVHTSHA*AVMLSWETLNV
Trigger: CACATTCAGGGTTTCCCAGGACAACATTACTGCCCACGCATGGCTAGTATGAACAAGCCTGCATTTCAGGCA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000035606.10
CDS CAA 72 bp AGGCTTGTTCATACTAGCCATGCGTGGGCAGTAATGTaGTCCTGGGAAACCCTGAATGTGAACTTCCAGTGG +
Preference number: 6 (lower is better)
Translates to: RLVHTSHAWAVM*SWETLNVNFQW
Trigger: CCACTGGAAGTTCACATTCAGGGTTTCCCAGGACAACATTACTGCCCACGCATGGCTAGTATGAACAAGCCT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000035606.10
CDS TCA 72 bp GGATTCCTTCTGGTAAAATCATCTTGGCTCCAGCTATaGATGCTGATGTTTCTCGGGCCTGAGCCTGGGAAT +
Preference number: 6 (lower is better)
Translates to: GFLLVKSSWLQL*MLMFLGPEPGN
Trigger: ATTCCCAGGCTCAGGCCCGAGAAACATCAGCATTCATAGCTGGAGCCAAGATGATTTTACCAGAAGGAATCC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000035606.10
CDS TCA 72 bp CAAACCCAACTGGCATTGGTTCACCATAGGGGATCCTaGCTTCCTCATACAGCTTGGTATTCTCTCTCTGGA +
Preference number: 6 (lower is better)
Translates to: QTQLALVHHRGS*LPHTAWYSLSG
Trigger: TCCAGAGAGAGAATACCAAGCTGTATGAGGAAGTCAGGATCCCCTATGGTGAACCAATGCCAGTTGGGTTTG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000035606.10
CDS GCA 72 bp GTGGTTCAATGGTGCGATTATCCTCTCCAACTTCAATaGAGTGGGAAAGCTCCAATTCAACCAGAGACTGCC +
Preference number: 6 (lower is better)
Translates to: VVQWCDYPLQLQ*SGKAPIQPETA
Trigger: GGCAGTCTCTGGTTGAATTGGAGCTTTCCCACTGCATTGAAGTTGGAGAGGATAATCGCACCATTGAACCAC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000035606.10
CDS CAA 90 bp TATGTTTGGTATTGTGAGAAGAGAAGAGTCCTTGAGCCATCGGCCTaGGATCACCATCTGAATCAGGTGGGTGATATTCAGGACGGTCAC +
Preference number: 6 (lower is better)
Translates to: YVWYCEKRRVLEPSA*DHHLNQVGDIQDGH
Trigger: GTGACCGTCCTGAATATCACCCACCTGATTCAGATGGTGATCCAAGGCCGATGGCTCAAGGACTCTTCTCTTCTCACAATACCAAACATA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000035606.10
CDS TCA 72 bp CAAATTGCGGTCGTCCAGCTCGGCCAAATATCTGCATaGCATCTAAAATTCCAAGGTCAACAAAGGAGCCTC +
Preference number: 6 (lower is better)
Translates to: QIAVVQLGQISA*HLKFQGQQRSL
Trigger: GAGGCTCCTTTGTTGACCTTGGAATTTTAGATGTCATGCAGATATTTGGCCGAGCTGGACGACCGCAATTTG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000035606.10
CDS TCA 72 bp TTCCCTTTGGAAGCCCAAAATGGACTCTCTGTAGGCTaGCTTGAAGCACATACTCCTGATCAGCATGCAACT +
Preference number: 6 (lower is better)
Translates to: FPLEAQNGLSVG*LEAHTPDQHAT
Trigger: AGTTGCATGCTGATCAGGAGTATGTGCTTCAAGTCAGCCTACAGAGAGTCCATTTTGGGCTTCCAAAGGGAA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000035606.10
CDS CCA 72 bp ATGGTCATTTGTAGGATCTTCTACCCAAATCCACCATaGTTCCCCCACTGTTCCATGAACCTGGTCATTCCA +
Preference number: 6 (lower is better)
Translates to: MVICRIFYPNPP*FPHCSMNLVIP
Trigger: TGGAATGACCAGGTTCATGGAACAGTGGGGGAACCATGGTGGATTTGGGTAGAAGATCCTACAAATGACCAT
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000035606.10
CDS CCA 72 bp ATTCTGCCAGCTTCGACTAACTCCATCCCACTTTTCTaGTGTGGTGACAATAAGGTCAGCCTTAGCAATGGA +
Preference number: 6 (lower is better)
Translates to: ILPASTNSIPLF*CGDNKVSLSNG
Trigger: TCCATTGCTAAGGCTGACCTTATTGTCACCACACCAGAAAAGTGGGATGGAGTTAGTCGAAGCTGGCAGAAT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000035606.10
CDS CCA 72 bp TCAATGGTGCGATTATCCTCTCCAACTTCAATGCAGTaGGAAAGCTCCAATTCAACCAGAGACTGCCCAATC +
Preference number: 6 (lower is better)
Translates to: SMVRLSSPTSMQ*ESSNSTRDCPI
Trigger: GATTGGGCAGTCTCTGGTTGAATTGGAGCTTTCCCACTGCATTGAAGTTGGAGAGGATAATCGCACCATTGA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000035606.10
CDS CAA 72 bp CTCTCTATTAGAGACATAGCGGTCCTTACAGTGGCATaGCGAGCATGTACAAATACCATCACCTGGTGTCCA +
Preference number: 6 (lower is better)
Translates to: LSIRDIAVLTVA*RACTNTITWCP
Trigger: TGGACACCAGGTGATGGTATTTGTACATGCTCGCAATGCCACTGTAAGGACCGCTATGTCTCTAATAGAGAG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000035606.10
CDS CAA 72 bp TATTGTGAGAAGAGAAGAGTCCTTGAGCCATCGGCCTaGGATCACCATCTGAATCAGGTGGGTGATATTCAG +
Preference number: 6 (lower is better)
Translates to: YCEKRRVLEPSA*DHHLNQVGDIQ
Trigger: CTGAATATCACCCACCTGATTCAGATGGTGATCCAAGGCCGATGGCTCAAGGACTCTTCTCTTCTCACAATA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000035606.10
CDS CAA 90 bp TGTGTCTTACTGGTAAGTCTGTGTATTCTTCTGCATCACTCAGAATaGACAGCAGTTCCTCAGTGCTGCACTCAGGTTTCAAACGGTCCT +
Preference number: 6 (lower is better)
Translates to: CVLLVSLCILLHHSE*TAVPQCCTQVSNGP
Trigger: AGGACCGTTTGAAACCTGAGTGCAGCACTGAGGAACTGCTGTCAATTCTGAGTGATGCAGAAGAATACACAGACTTACCAGTAAGACACA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000035606.10
CDS TCA 72 bp CTTTCACAACAATGCCCAGTGGCTCTAGACGTTTGCTaGAGTAATTTGTCATCTCAGCTGCCAAGGCTTTCA +
Preference number: 6 (lower is better)
Translates to: LSQQCPVALDVC*SNLSSQLPRLS
Trigger: TGAAAGCCTTGGCAGCTGAGATGACAAATTACTTCAGCAAACGTCTAGAGCCACTGGGCATTGTTGTGAAAG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000035606.10
CDS TCA 72 bp ACCCTGAATGTGAACTTCCAGTGGAACTGGGCGAACTaGTGGTCGGAAGTTAAACAAACCCATCTGCTTAAT +
Preference number: 6 (lower is better)
Translates to: TLNVNFQWNWAN*WSEVKQTHLLN
Trigger: ATTAAGCAGATGGGTTTGTTTAACTTCCGACCATCAGTTCGCCCAGTTCCACTGGAAGTTCACATTCAGGGT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000035606.10
CDS GCA 72 bp CCAAGAATTCTTATCATACTCTGTGTGGATTCAACCTaGCGTAAGGTCCTGGCGACTATGCTTTCTAGCACT +
Preference number: 6 (lower is better)
Translates to: PRILIILCVDST*RKVLATMLSST
Trigger: AGTGCTAGAAAGCATAGTCGCCAGGACCTTACGGCAGGTTGAATCCACACAGAGTATGATAAGAATTCTTGG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000035606.10
CDS CCA 72 bp TTGCAGACAATCCAAGAATTCTTATCATACTCTGTGTaGATTCAACCTGCCGTAAGGTCCTGGCGACTATGC +
Preference number: 6 (lower is better)
Translates to: LQTIQEFLSYSV*IQPAVRSWRLC
Trigger: GCATAGTCGCCAGGACCTTACGGCAGGTTGAATCCACACAGAGTATGATAAGAATTCTTGGATTGTCTGCAA
46% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000035606.10
CDS CCA 72 bp GTCCATCTCTTGCTCATCCATATTCAACCACTGCTTTaGGTCTTCTTCAGTGGCCAGAAATGCTATCAACTC +
Preference number: 6 (lower is better)
Translates to: VHLLLIHIQPLL*VFFSGQKCYQL
Trigger: GAGTTGATAGCATTTCTGGCCACTGAAGAAGACCCAAAGCAGTGGTTGAATATGGATGAGCAAGAGATGGAC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000035606.10
CDS CCA 72 bp TTTCCTGAAAAGGTGAAGGTGGTGCTGCTCTATGTTTaGTATTGTGAGAAGAGAAGAGTCCTTGAGCCATCG +
Preference number: 6 (lower is better)
Translates to: FPEKVKVVLLYV*YCEKRRVLEPS
Trigger: CGATGGCTCAAGGACTCTTCTCTTCTCACAATACCAAACATAGAGCAGCACCACCTTCACCTTTTCAGGAAA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000035606.10
CDS CAA 72 bp GTATTCTCTCTCTGGATTCCTTCTGGTAAAATCATCTaGGCTCCAGCTATGAATGCTGATGTTTCTCGGGCC +
Preference number: 6 (lower is better)
Translates to: VFSLWIPSGKII*APAMNADVSRA
Trigger: GGCCCGAGAAACATCAGCATTCATAGCTGGAGCCAAGATGATTTTACCAGAAGGAATCCAGAGAGAGAATAC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000035606.10
CDS CAA 72 bp AAGGTCAACAAAGGAGCCTCTTTTGGCAGCGTATATTaGTGTTCCCTTAATAACCACGGCATGTGCAGGAAG +
Preference number: 6 (lower is better)
Translates to: KVNKGASFGSVY*CSLNNHGMCRK
Trigger: CTTCCTGCACATGCCGTGGTTATTAAGGGAACACAAATATACGCTGCCAAAAGAGGCTCCTTTGTTGACCTT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000035606.10
CDS CAA 90 bp TGGCTGAGTTTATCGTGGGTTGTTATAATGATTCCTTCCCCAAATTaGTCAAATTGCGGTCGTCCAGCTCGGCCAAATATCTGCATGACA +
Preference number: 6 (lower is better)
Translates to: WLSLSWVVIMIPSPN*SNCGRPARPNICMT
Trigger: TGTCATGCAGATATTTGGCCGAGCTGGACGACCGCAATTTGACAAATTTGGGGAAGGAATCATTATAACAACCCACGATAAACTCAGCCA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000035606.10
CDS TCA 72 bp TCTACAGTTTTTCGGTCTCTTTCATGCAGGCCAGCATaGTGCATTCCTATTCCAAAAGCTAGAGTCAGCTTG +
Preference number: 6 (lower is better)
Translates to: STVFRSLSCRPA*CIPIPKARVSL
Trigger: CAAGCTGACTCTAGCTTTTGGAATAGGAATGCATCATGCTGGCCTGCATGAAAGAGACCGAAAAACTGTAGA
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000035606.10
CDS GCA 72 bp ATGTTGTCCATCTCTTGCTCATCCATATTCAACCACTaGTTTGGGTCTTCTTCAGTGGCCAGAAATGCTATC +
Preference number: 6 (lower is better)
Translates to: MLSISCSSIFNH*FGSSSVARNAI
Trigger: GATAGCATTTCTGGCCACTGAAGAAGACCCAAAGCAGTGGTTGAATATGGATGAGCAAGAGATGGACAACAT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000035606.10
CDS CCA 72 bp GATATAAACTGGTTTTTCCTCAAACCCAACTGGCATTaGTTCACCATAGGGGATCCTGACTTCCTCATACAG +
Preference number: 6 (lower is better)
Translates to: DINWFFLKPNWH*FTIGDPDFLIQ
Trigger: CTGTATGAGGAAGTCAGGATCCCCTATGGTGAACCAATGCCAGTTGGGTTTGAGGAAAAACCAGTTTATATC
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000035606.10
CDS CAA 72 bp CAAGTGCACCTCGTCAAGAATCAGGAGTTTTACGATTaGGGAAAGAGCAACATCCCCAACACTCTTTCTTGT +
Preference number: 6 (lower is better)
Translates to: QVHLVKNQEFYD*GKSNIPNTLSC
Trigger: ACAAGAAAGAGTGTTGGGGATGTTGCTCTTTCCCAAATCGTAAAACTCCTGATTCTTGACGAGGTGCACTTG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000035606.10
CDS CAA 72 bp AGCTTGAGGTTGGAATCTCGTACTGTTCCAATGATGTaGTCCATCTCTTGCTCATCCATATTCAACCACTGC +
Preference number: 6 (lower is better)
Translates to: SLRLESRTVPMM*SISCSSIFNHC
Trigger: GCAGTGGTTGAATATGGATGAGCAAGAGATGGACAACATCATTGGAACAGTACGAGATTCCAACCTCAAGCT
44% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000035606.10
CDS CAA 90 bp TTCATGCAGCAAGTGCACCTCGTCAAGAATCAGGAGTTTTACGATTaGGGAAAGAGCAACATCCCCAACACTCTTTCTTGTTACTACATC +
Preference number: 6 (lower is better)
Translates to: FMQQVHLVKNQEFYD*GKSNIPNTLSCYYI
Trigger: GATGTAGTAACAAGAAAGAGTGTTGGGGATGTTGCTCTTTCCCAAATCGTAAAACTCCTGATTCTTGACGAGGTGCACTTGCTGCATGAA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000035606.10
CDS TCA 72 bp TATGCTTTGCACCCCAAAGCTGTAATTGGTAAAGGTTaGAGGTCCAATAATTCTGTATGGGGAGGATGTCTC +
Preference number: 6 (lower is better)
Translates to: YALHPKAVIGKG*RSNNSVWGGCL
Trigger: GAGACATCCTCCCCATACAGAATTATTGGACCTTCAACCTTTACCAATTACAGCTTTGGGGTGCAAAGCATA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000035606.10
CDS TCA 72 bp GGTGTTTCAGGAGTAAAGAACGAGATGGAAGCATCATaGTGTGTTCGAACAAATCCTACTCGTTTTACAGCC +
Preference number: 6 (lower is better)
Translates to: GVSGVKNEMEAS*CVRTNPTRFTA
Trigger: GGCTGTAAAACGAGTAGGATTTGTTCGAACACATCATGATGCTTCCATCTCGTTCTTTACTCCTGAAACACC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000035606.10
CDS GCA 72 bp GAATCTCGTACTGTTCCAATGATGTTGTCCATCTCTTaGTCATCCATATTCAACCACTGCTTTGGGTCTTCT +
Preference number: 6 (lower is better)
Translates to: ESRTVPMMLSIS*SSIFNHCFGSS
Trigger: AGAAGACCCAAAGCAGTGGTTGAATATGGATGAGCAAGAGATGGACAACATCATTGGAACAGTACGAGATTC
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000035606.10
CDS CCA 72 bp AAGTGCACCTCGTCAAGAATCAGGAGTTTTACGATTTaGGAAAGAGCAACATCCCCAACACTCTTTCTTGTT +
Preference number: 6 (lower is better)
Translates to: KCTSSRIRSFTI*ERATSPTLFLV
Trigger: AACAAGAAAGAGTGTTGGGGATGTTGCTCTTTCCCAAATCGTAAAACTCCTGATTCTTGACGAGGTGCACTT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000035606.10
CDS CAA 72 bp TTATCGTGGGTTGTTATAATGATTCCTTCCCCAAATTaGTCAAATTGCGGTCGTCCAGCTCGGCCAAATATC +
Preference number: 6 (lower is better)
Translates to: LSWVVIMIPSPN*SNCGRPARPNI
Trigger: GATATTTGGCCGAGCTGGACGACCGCAATTTGACAAATTTGGGGAAGGAATCATTATAACAACCCACGATAA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000035606.10
CDS CAA 72 bp TGCATTCCTATTCCAAAAGCTAGAGTCAGCTTGAGGTaGGAATCTCGTACTGTTCCAATGATGTTGTCCATC +
Preference number: 6 (lower is better)
Translates to: CIPIPKARVSLR*ESRTVPMMLSI
Trigger: GATGGACAACATCATTGGAACAGTACGAGATTCCAACCTCAAGCTGACTCTAGCTTTTGGAATAGGAATGCA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000035606.10
CDS CAA 90 bp ATCTGCATGACATCTAAAATTCCAAGGTCAACAAAGGAGCCTCTTTaGGCAGCGTATATTTGTGTTCCCTTAATAACCACGGCATGTGCA +
Preference number: 6 (lower is better)
Translates to: ICMTSKIPRSTKEPL*AAYICVPLITTACA
Trigger: TGCACATGCCGTGGTTATTAAGGGAACACAAATATACGCTGCCAAAAGAGGCTCCTTTGTTGACCTTGGAATTTTAGATGTCATGCAGAT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000035606.10
CDS CAA 90 bp GTTATCTGCAAGACTTTCCAGAAACTGACTCTCAATTGGGTTTTGTaGAGTGAGCAAACTGAGGTAATGGCTGAGTTTATCGTGGGTTGT +
Preference number: 6 (lower is better)
Translates to: VICKTFQKLTLNWVL*SEQTEVMAEFIVGC
Trigger: ACAACCCACGATAAACTCAGCCATTACCTCAGTTTGCTCACTCAACAAAACCCAATTGAGAGTCAGTTTCTGGAAAGTCTTGCAGATAAC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000035606.10
CDS CAA 90 bp CCGTGTGATGGGCTGAATGGAAGCTTCCATTGTAACAGAAGGAATTaGATGAACACACTGTTTGACCTTCAGTCCAATATTCACATGATG +
Preference number: 6 (lower is better)
Translates to: PCDGLNGSFHCNRRN*MNTLFDLQSNIHMM
Trigger: CATCATGTGAATATTGGACTGAAGGTCAAACAGTGTGTTCATCAAATTCCTTCTGTTACAATGGAAGCTTCCATTCAGCCCATCACACGG
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000035606.10
CDS CCA 72 bp GAATTAAGGAACCGATCTACAATTGTAATTCTGTTCTaGAGCAGCTTCTCAATCAGATCCAGTCCTTCAGGT +
Preference number: 6 (lower is better)
Translates to: ELRNRSTIVILF*SSFSIRSSPSG
Trigger: ACCTGAAGGACTGGATCTGATTGAGAAGCTGCTCCAGAACAGAATTACAATTGTAGATCGGTTCCTTAATTC
42% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000035606.10
ENSMUST00000220355.2
CDS CCA 72 bp AGTGTGTGGAATATCTGCGTCTGTACAGGGTTAAAGTaGCTGAAGTTATATAGAGCTTCATATGCTTTGCAC +
Preference number: 6 (lower is better)
Translates to: SVWNICVCTGLK*LKLYRASYALH
Trigger: GTGCAAAGCATATGAAGCTCTATATAACTTCAGCCACTTTAACCCTGTACAGACGCAGATATTCCACACACT
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000035606.10
CDS CCA 72 bp CAAATAGTAATAGGAGGCAATTCGACCACATGTCAGTaGTTCAATGGTGCGATTATCCTCTCCAACTTCAAT +
Preference number: 6 (lower is better)
Translates to: QIVIGGNSTTCQ*FNGAIILSNFN
Trigger: ATTGAAGTTGGAGAGGATAATCGCACCATTGAACCACTGACATGTGGTCGAATTGCCTCCTATTACTATTTG
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000035606.10
CDS CAA 90 bp TTTCTGGTGTGGTCACCAGCATCTGAGTTCGTAAAATTTCACTTTTaGACAACTGCATATCTCCAGTCAATTCTTTCACAACAATGCCCA +
Preference number: 6 (lower is better)
Translates to: FLVWSPASEFVKFHF*TTAYLQSILSQQCP
Trigger: TGGGCATTGTTGTGAAAGAATTGACTGGAGATATGCAGTTGTCAAAAAGTGAAATTTTACGAACTCAGATGCTGGTGACCACACCAGAAA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000035606.10
CDS GCA 72 bp AAATGTCATAAAGAGAAATGCAGCCCCACTCTCAATTaGTTCTCTCCCATTATCCGTTCCAACGATTTGTTT +
Preference number: 6 (lower is better)
Translates to: KCHKEKCSPTLN*FSPIIRSNDLF
Trigger: AAACAAATCGTTGGAACGGATAATGGGAGAGAAGCAATTGAGAGTGGGGCTGCATTTCTCTTTATGACATTT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000035606.10
ENSMUST00000220355.2
CDS CAA 72 bp ACATCTAAAATTCCAAGGTCAACAAAGGAGCCTCTTTaGGCAGCGTATATTTGTGTTCCCTTAATAACCACG +
Preference number: 6 (lower is better)
Translates to: TSKIPRSTKEPL*AAYICVPLITT
Trigger: CGTGGTTATTAAGGGAACACAAATATACGCTGCCAAAAGAGGCTCCTTTGTTGACCTTGGAATTTTAGATGT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000035606.10
CDS CCA 72 bp GATGTTATTGTACCTCCAGCAATCTCTGCATTTAAGTaGTCAGACAACACTCCTAATAAGCTTGATTCTACT +
Preference number: 6 (lower is better)
Translates to: DVIVPPAISAFK*SDNTPNKLDST
Trigger: AGTAGAATCAAGCTTATTAGGAGTGTTGTCTGACCACTTAAATGCAGAGATTGCTGGAGGTACAATAACATC
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000035606.10
CDS CAA 72 bp ATTTTCCAATCATCCATTCTTTCACGTACTAGAGCTTaGAGGGGTGCAATATATACTGCCTTTGAAGTAGGA +
Preference number: 6 (lower is better)
Translates to: IFQSSILSRTRA*RGAIYTAFEVG
Trigger: TCCTACTTCAAAGGCAGTATATATTGCACCCCTCAAAGCTCTAGTACGTGAAAGAATGGATGATTGGAAAAT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000035606.10
CDS CAA 72 bp AGACATTTGGCCAATTCATTATTCGTATGGTCCTCATaGTGTCTTACTGGTAAGTCTGTGTATTCTTCTGCA +
Preference number: 6 (lower is better)
Translates to: RHLANSLFVWSS*CLTGKSVYSSA
Trigger: TGCAGAAGAATACACAGACTTACCAGTAAGACACAATGAGGACCATACGAATAATGAATTGGCCAAATGTCT
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000035606.10
CDS CAA 72 bp TGGTCACCAGCATCTGAGTTCGTAAAATTTCACTTTTaGACAACTGCATATCTCCAGTCAATTCTTTCACAA +
Preference number: 6 (lower is better)
Translates to: WSPASEFVKFHF*TTAYLQSILSQ
Trigger: TTGTGAAAGAATTGACTGGAGATATGCAGTTGTCAAAAAGTGAAATTTTACGAACTCAGATGCTGGTGACCA
38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000035606.10
CDS CAA 72 bp TTTTCCACACCTCCTGGAGCTGAGAGTTCACAGAAATaGTTTAACAAGGCATCTAATTCTTCTATTTCTTCT +
Preference number: 6 (lower is better)
Translates to: FSTPPGAESSQK*FNKASNSSISS
Trigger: AGAAGAAATAGAAGAATTAGATGCCTTGTTAAACAATTTCTGTGAACTCTCAGCTCCAGGAGGTGTGGAAAA
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000035606.10
CDS CAA 90 bp TCTATCCTAATTTTCCAATCATCCATTCTTTCACGTACTAGAGCTTaGAGGGGTGCAATATATACTGCCTTTGAAGTAGGATATTTGTTG +
Preference number: 6 (lower is better)
Translates to: SILIFQSSILSRTRA*RGAIYTAFEVGYLL
Trigger: CAACAAATATCCTACTTCAAAGGCAGTATATATTGCACCCCTCAAAGCTCTAGTACGTGAAAGAATGGATGATTGGAAAATTAGGATAGA
37% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000035606.10
CDS CCA 72 bp CAAATGAATGAGGATTTAATTCAATGGGAAGACATTTaGCCAATTCATTATTCGTATGGTCCTCATTGTGTC +
Preference number: 6 (lower is better)
Translates to: QMNEDLIQWEDI*PIHYSYGPHCV
Trigger: GACACAATGAGGACCATACGAATAATGAATTGGCCAAATGTCTTCCCATTGAATTAAATCCTCATTCATTTG
36% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000035606.10
CDS CAA 72 bp TTCTTCAAAACGAATCATCTTTGCTTTATCCAACTTTaGTCCAACTTCAATAAGGAGCTGTTCTCGATGCTT +
Preference number: 6 (lower is better)
Translates to: FFKTNHLCFIQL*SNFNKELFSML
Trigger: AAGCATCGAGAACAGCTCCTTATTGAAGTTGGACAAAAGTTGGATAAAGCAAAGATGATTCGTTTTGAAGAA
36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000035606.10