RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for ASB9 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000031384

Ensembl transcript IDs: ENSMUST00000033756.3

Found 43 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
CDS-3UTR CCA 90 bp AGTGGTAAGAGTTTCAACACTGTTTTTCAGTTGCTTGCGAATCCAGTCCCTCCAGTGAGGAGAGCCTCCTaGCCTGTCACTCCTGCCCCT +
Preference number: 4 (lower is better)
Translates to: SGKSFNTVFQLLANPVPPVRRAS*PVTPAP
Trigger: AGGGGCAGGAGTGACAGGCCAGGAGGCTCTCCTCAC...TGGAGGGACTGGATTCGCAAGCAACTGAAAAACAGTGTTGAAACTCTTACCACT
52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000033756.3
CDS-3UTR TCA 90 bp AGTGGTAAGAGTTTCAACACTGTTTTTCAGTTGCTTGCGAATCCAGTCCCTCCAAGGACAGGTGACCTCTaGGGCATGCTTCATGGAGGG +
Preference number: 4 (lower is better)
Translates to: SGKSFNTVFQLLANPVPPRTGDL*GMLHGG
Trigger: CCCTCCATGAAGCATGCCTCAGAGGTCACCTGTCCT...TGGAGGGACTGGATTCGCAAGCAACTGAAAAACAGTGTTGAAACTCTTACCACT
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000033756.3
CDS-3UTR CCA 90 bp GGTAAGAGTTTCAACACTGTTTTTCAGTTGCTTGCGAATCCAGTCCCTCCACAAAGCTCAGTCTCAGGGTaGGGAGTGGCTCCATGCTGT +
Preference number: 4 (lower is better)
Translates to: GKSFNTVFQLLANPVPPQSSVSG*GVAPCC
Trigger: ACAGCATGGAGCCACTCCCCACCCTGAGACTGAGCT...TTGTGGAGGGACTGGATTCGCAAGCAACTGAAAAACAGTGTTGAAACTCTTACC
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000033756.3
CDS-3UTR GCA 90 bp TCCAGTGGTAAGAGTTTCAACACTGTTTTTCAGTTGCTTGCGAATCCAGTCCCTCTGGCCTGTCACTCCTaGCCCTTTGTTCACCATCCA +
Preference number: 4 (lower is better)
Translates to: SSGKSFNTVFQLLANPVPLACHS*PFVHHP
Trigger: TGGATGGTGAACAAAGGGGCAGGAGTGACAGGCCAG...AGGGACTGGATTCGCAAGCAACTGAAAAACAGTGTTGAAACTCTTACCACTGGA
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000033756.3
CDS-3UTR TCA 90 bp TCCAGTGGTAAGAGTTTCAACACTGTTTTTCAGTTGCTTGCGAATCCAGTCCCTTTGCTCCGAAATCCATaGGCAGATGCACCAGCTCCA +
Preference number: 4 (lower is better)
Translates to: SSGKSFNTVFQLLANPVPLLRNP*ADAPAP
Trigger: TGGAGCTGGTGCATCTGCTCATGGATTTCGGAGCAA...AGGGACTGGATTCGCAAGCAACTGAAAAACAGTGTTGAAACTCTTACCACTGGA
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000033756.3
CDS-3UTR TCA 90 bp GAAACTCCAGTGGTAAGAGTTTCAACACTGTTTTTCAGTTGCTTGCGAATCCAGATCCTGGCCACTACGTaGAGAGGAGAATCCAAGCCT +
Preference number: 4 (lower is better)
Translates to: ETPVVRVSTLFFSCLRIQILATT*RGESKP
Trigger: AGGCTTGGATTCTCCTCTTCACGTAGTGGCCAGGAT...CTGGATTCGCAAGCAACTGAAAAACAGTGTTGAAACTCTTACCACTGGAGTTTC
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000033756.3
CDS-3UTR CCA 90 bp GGTAAGAGTTTCAACACTGTTTTTCAGTTGCTTGCGAATCCAGTCCCTCCACAAGAGTTCGCCAGTCTATaGTCATGCCATTCACCTGAG +
Preference number: 4 (lower is better)
Translates to: GKSFNTVFQLLANPVPPQEFASL*SCHSPE
Trigger: CTCAGGTGAATGGCATGACCATAGACTGGCGAACTC...TTGTGGAGGGACTGGATTCGCAAGCAACTGAAAAACAGTGTTGAAACTCTTACC
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000033756.3
CDS-3UTR TCA 90 bp GTGGTAAGAGTTTCAACACTGTTTTTCAGTTGCTTGCGAATCCAGTCCCTCCACAGCTCAGAAATCTTATaGTGCTGCCGAATGCCAAAG +
Preference number: 4 (lower is better)
Translates to: VVRVSTLFFSCLRIQSLHSSEIL*CCRMPK
Trigger: CTTTGGCATTCGGCAGCATCATAAGATTTCTGAGCT...GTGGAGGGACTGGATTCGCAAGCAACTGAAAAACAGTGTTGAAACTCTTACCAC
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000033756.3
CDS-3UTR GCA 90 bp GGTAAGAGTTTCAACACTGTTTTTCAGTTGCTTGCGAATCCAGTCCCTCCACAAACTGCCGCTGACACATaGATTAAACAAGGGAGTTCG +
Preference number: 4 (lower is better)
Translates to: GKSFNTVFQLLANPVPPQTAADT*IKQGSS
Trigger: CGAACTCCCTTGTTTAATGCATGTGTCAGCGGCAGT...TTGTGGAGGGACTGGATTCGCAAGCAACTGAAAAACAGTGTTGAAACTCTTACC
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000033756.3
CDS-3UTR CCA 90 bp GGTAAGAGTTTCAACACTGTTTTTCAGTTGCTTGCGAATCCAGTCCCTCCACAATGTTATAGTCAATATTaGCCCCATGAGCTGCGAGGG +
Preference number: 4 (lower is better)
Translates to: GKSFNTVFQLLANPVPPQCYSQY*PHELRG
Trigger: CCCTCGCAGCTCATGGGGCCAATATTGACTATAACA...TTGTGGAGGGACTGGATTCGCAAGCAACTGAAAAACAGTGTTGAAACTCTTACC
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000033756.3
CDS-3UTR TCA 90 bp CTTCATTTATTTGAAACTCCAGTGGTAAGAGTTTCAACACTGTTTTTCAGTTGCGAAAGGAATGGTAGGTaGGGAGAGCCTCCTGGCCTG +
Preference number: 4 (lower is better)
Translates to: LHLFETPVVRVSTLFFSCERNGR*GEPPGL
Trigger: CAGGCCAGGAGGCTCTCCTCACCTACCATTCCTTTC...GCAACTGAAAAACAGTGTTGAAACTCTTACCACTGGAGTTTCAAATAAATGAAG
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000033756.3
CDS-3UTR TCA 90 bp GGTAAGAGTTTCAACACTGTTTTTCAGTTGCTTGCGAATCCAGTCCCTCCACAATCCAAGCCTTTGCCTTaGTTCACAGATACTCCTGAT +
Preference number: 4 (lower is better)
Translates to: GKSFNTVFQLLANPVPPQSKPLP*FTDTPD
Trigger: ATCAGGAGTATCTGTGAATCAAGGCAAAGGCTTGGA...TTGTGGAGGGACTGGATTCGCAAGCAACTGAAAAACAGTGTTGAAACTCTTACC
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000033756.3
CDS-3UTR GCA 90 bp GGTAAGAGTTTCAACACTGTTTTTCAGTTGCTTGCGAATCCAGTCCCTCCACAATATGATGCTGCCGAATaGCAAAGCATTTCCGGATTC +
Preference number: 4 (lower is better)
Translates to: GKSFNTVFQLLANPVPPQYDAAE*QSISGF
Trigger: GAATCCGGAAATGCTTTGGCATTCGGCAGCATCATA...TTGTGGAGGGACTGGATTCGCAAGCAACTGAAAAACAGTGTTGAAACTCTTACC
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000033756.3
CDS-3UTR TCA 90 bp TTATTTGAAACTCCAGTGGTAAGAGTTTCAACACTGTTTTTCAGTTGCTTGCGAAGATTCACACAGTCCTaGCTGCCGCTGACACATGCA +
Preference number: 4 (lower is better)
Translates to: LFETPVVRVSTLFFSCLRRFTQS*LPLTHA
Trigger: TGCATGTGTCAGCGGCAGTCAGGACTGTGTGAATCT...TCGCAAGCAACTGAAAAACAGTGTTGAAACTCTTACCACTGGAGTTTCAAATAA
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000033756.3
CDS-3UTR GCA 90 bp CATTTATTTGAAACTCCAGTGGTAAGAGTTTCAACACTGTTTTTCAGTTGCTTGGTGACCTCTGAGGCATaGTTCATGGAGGGGAGACAC +
Preference number: 4 (lower is better)
Translates to: HLFETPVVRVSTLFFSCLVTSEA*FMEGRH
Trigger: GTGTCTCCCCTCCATGAAGCATGCCTCAGAGGTCAC...CAAGCAACTGAAAAACAGTGTTGAAACTCTTACCACTGGAGTTTCAAATAAATG
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000033756.3
CDS-3UTR GCA 90 bp TTTGAAACTCCAGTGGTAAGAGTTTCAACACTGTTTTTCAGTTGCTTGCGAATCGCCAGTCTATGGTCATaGCATTCACCTGAGCTCCAT +
Preference number: 4 (lower is better)
Translates to: FETPVVRVSTLFFSCLRIASLWS*HSPELH
Trigger: ATGGAGCTCAGGTGAATGGCATGACCATAGACTGGC...GATTCGCAAGCAACTGAAAAACAGTGTTGAAACTCTTACCACTGGAGTTTCAAA
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000033756.3
CDS-3UTR GCA 90 bp TCCAGTGGTAAGAGTTTCAACACTGTTTTTCAGTTGCTTGCGAATCCAGTCCCTGAGAATCCAAGCCTTTaGCTTGATTCACAGATACTC +
Preference number: 4 (lower is better)
Translates to: SSGKSFNTVFQLLANPVPENPSL*LDSQIL
Trigger: GAGTATCTGTGAATCAAGGCAAAGGCTTGGATTCTC...AGGGACTGGATTCGCAAGCAACTGAAAAACAGTGTTGAAACTCTTACCACTGGA
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000033756.3
CDS-3UTR CCA 90 bp AGTGGTAAGAGTTTCAACACTGTTTTTCAGTTGCTTGCGAATCCAGTCCCTCCATTCTGCAAGAAGATCTaGATCAAAGGACTCTCCAGA +
Preference number: 4 (lower is better)
Translates to: SGKSFNTVFQLLANPVPPFCKKI*IKGLSR
Trigger: TCTGGAGAGTCCTTTGATCCAGATCTTCTTGCAGAA...TGGAGGGACTGGATTCGCAAGCAACTGAAAAACAGTGTTGAAACTCTTACCACT
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000033756.3
CDS-3UTR TCA 90 bp CTTCATTTATTTGAAACTCCAGTGGTAAGAGTTTCAACACTGTTTTTCAGTTGCTCAATATTGGCCCCATaGGCTGCGAGGGACTCAATG +
Preference number: 4 (lower is better)
Translates to: LHLFETPVVRVSTLFFSCSILAP*AARDSM
Trigger: CATTGAGTCCCTCGCAGCTCATGGGGCCAATATTGA...GCAACTGAAAAACAGTGTTGAAACTCTTACCACTGGAGTTTCAAATAAATGAAG
42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000033756.3
CDS-3UTR CCA 90 bp CTTCATTTATTTGAAACTCCAGTGGTAAGAGTTTCAACACTGTTTTTCAGTTGCCTTTTAGCAGCCTCATaGATGGGAGAGGCCAGCTCA +
Preference number: 4 (lower is better)
Translates to: LHLFETPVVRVSTLFFSCLLAAS*MGEASS
Trigger: TGAGCTGGCCTCTCCCATCCATGAGGCTGCTAAAAG...GCAACTGAAAAACAGTGTTGAAACTCTTACCACTGGAGTTTCAAATAAATGAAG
42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000033756.3
CDS-3UTR CCA 90 bp TTTGAAACTCCAGTGGTAAGAGTTTCAACACTGTTTTTCAGTTGCTTGCGAATCATTCTAGGAGCTTCTTaGCACAGGCTACTTGCTGGT +
Preference number: 4 (lower is better)
Translates to: FETPVVRVSTLFFSCLRIILGAS*HRLLAG
Trigger: ACCAGCAAGTAGCCTGTGCCAAGAAGCTCCTAGAAT...GATTCGCAAGCAACTGAAAAACAGTGTTGAAACTCTTACCACTGGAGTTTCAAA
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000033756.3
CDS-3UTR GCA 90 bp CATTTATTTGAAACTCCAGTGGTAAGAGTTTCAACACTGTTTTTCAGTTGCTTGATTGGCCCCATGAGCTaGGAGGGACTCAATGCATTT +
Preference number: 4 (lower is better)
Translates to: HLFETPVVRVSTLFFSCLIGPMS*EGLNAF
Trigger: AAATGCATTGAGTCCCTCGCAGCTCATGGGGCCAAT...CAAGCAACTGAAAAACAGTGTTGAAACTCTTACCACTGGAGTTTCAAATAAATG
41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000033756.3
CDS-3UTR CCA 90 bp CTTCATTTATTTGAAACTCCAGTGGTAAGAGTTTCAACACTGTTTTTCAGTTGCTTTACAGGCCAACCCTaGCTGATAAGGTTCCTCAGG +
Preference number: 4 (lower is better)
Translates to: LHLFETPVVRVSTLFFSCFTGQP*LIRFLR
Trigger: CCTGAGGAACCTTATCAGCCAGGGTTGGCCTGTAAA...GCAACTGAAAAACAGTGTTGAAACTCTTACCACTGGAGTTTCAAATAAATGAAG
41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000033756.3
CDS-3UTR CCA 90 bp CATTTATTTGAAACTCCAGTGGTAAGAGTTTCAACACTGTTTTTCAGTTGCTTGTGCCATCAGCATTCTTaGCTTGAGCGTTTGCTCCGA +
Preference number: 4 (lower is better)
Translates to: HLFETPVVRVSTLFFSCLCHQHS*LERLLR
Trigger: TCGGAGCAAACGCTCAAGCCAAGAATGCTGATGGCA...CAAGCAACTGAAAAACAGTGTTGAAACTCTTACCACTGGAGTTTCAAATAAATG
41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000033756.3
CDS-3UTR GCA 90 bp CATTTATTTGAAACTCCAGTGGTAAGAGTTTCAACACTGTTTTTCAGTTGCTTGCAGACATCCGTGGATTaGAGCATCATGAAGAGGAGA +
Preference number: 4 (lower is better)
Translates to: HLFETPVVRVSTLFFSCLQTSVD*SIMKRR
Trigger: TCTCCTCTTCATGATGCTGCAATCCACGGATGTCTG...CAAGCAACTGAAAAACAGTGTTGAAACTCTTACCACTGGAGTTTCAAATAAATG
40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000033756.3
CDS-3UTR GCA 90 bp CTTCATTTATTTGAAACTCCAGTGGTAAGAGTTTCAACACTGTTTTTCAGTTGCTGGGGTCCTTCATTCTaGAAGAAGATCTGGATCAAA +
Preference number: 4 (lower is better)
Translates to: LHLFETPVVRVSTLFFSCWGPSF*KKIWIK
Trigger: TTTGATCCAGATCTTCTTGCAGAATGAAGGACCCCA...GCAACTGAAAAACAGTGTTGAAACTCTTACCACTGGAGTTTCAAATAAATGAAG
38% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000033756.3
CDS CCA 90 bp GCGAGGGACTCAATGCATTTCACATATCCTCTTTTAGCAGCCTCATaGATGGGAGAGGCCAGCTCAGTCTCAGGGTGGGGAGTGGCTCCA +
Preference number: 5 (lower is better)
Translates to: ARDSMHFTYPLLAAS*MGEASSVSGWGVAP
Trigger: TGGAGCCACTCCCCACCCTGAGACTGAGCTGGCCTCTCCCATCCATGAGGCTGCTAAAAGAGGATATGTGAAATGCATTGAGTCCCTCGC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000033756.3
CDS TCA 90 bp AGGAAGCGCTTCAGGTCTTCCGGGAGGAGGAGCTCAGAAATCTTATaGTGCTGCCGAATGCCAAAGCATTTCCGGATTCTCAGGCGGCAT +
Preference number: 5 (lower is better)
Translates to: RKRFRSSGRRSSEIL*CCRMPKHFRILRRH
Trigger: ATGCCGCCTGAGAATCCGGAAATGCTTTGGCATTCGGCAGCATCATAAGATTTCTGAGCTCCTCCTCCCGGAAGACCTGAAGCGCTTCCT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000033756.3
CDS GCA 90 bp ATTCTCAGGCGGCATAGCTGCCTCAAAGACTGGGGTCCTTCATTCTaGAAGAAGATCTGGATCAAAGGACTCTCCAGAGGCACCAGGTCC +
Preference number: 5 (lower is better)
Translates to: ILRRHSCLKDWGPSF*KKIWIKGLSRGTRS
Trigger: GGACCTGGTGCCTCTGGAGAGTCCTTTGATCCAGATCTTCTTGCAGAATGAAGGACCCCAGTCTTTGAGGCAGCTATGCCGCCTGAGAAT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000033756.3
CDS CCA 90 bp CATAGCTGCCTCAAAGACTGGGGTCCTTCATTCTGCAAGAAGATCTaGATCAAAGGACTCTCCAGAGGCACCAGGTCCACAGGACGTTTG +
Preference number: 5 (lower is better)
Translates to: HSCLKDWGPSFCKKI*IKGLSRGTRSTGRL
Trigger: CAAACGTCCTGTGGACCTGGTGCCTCTGGAGAGTCCTTTGATCCAGATCTTCTTGCAGAATGAAGGACCCCAGTCTTTGAGGCAGCTATG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000033756.3
CDS CCA 90 bp CCAAAGCATTTCCGGATTCTCAGGCGGCATAGCTGCCTCAAAGACTaGGGTCCTTCATTCTGCAAGAAGATCTGGATCAAAGGACTCTCC +
Preference number: 5 (lower is better)
Translates to: PKHFRILRRHSCLKD*GPSFCKKIWIKGLS
Trigger: GGAGAGTCCTTTGATCCAGATCTTCTTGCAGAATGAAGGACCCCAGTCTTTGAGGCAGCTATGCCGCCTGAGAATCCGGAAATGCTTTGG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000033756.3
CDS GCA 90 bp CACTGGACATCCTGGCCACTACGTGAAGAGGAGAATCCAAGCCTTTaGCTTGATTCACAGATACTCCTGATTCTAGGAGCTTCTTGGCAC +
Preference number: 5 (lower is better)
Translates to: HWTSWPLREEENPSL*LDSQILLILGASWH
Trigger: GTGCCAAGAAGCTCCTAGAATCAGGAGTATCTGTGAATCAAGGCAAAGGCTTGGATTCTCCTCTTCACGTAGTGGCCAGGATGTCCAGTG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000033756.3
CDS GCA 90 bp TGTTCCGAGATGGCTGATGTTATAGTCAATATTGGCCCCATGAGCTaGGAGGGACTCAATGCATTTCACATATCCTCTTTTAGCAGCCTC +
Preference number: 5 (lower is better)
Translates to: CSEMADVIVNIGPMS*EGLNAFHISSFSSL
Trigger: GAGGCTGCTAAAAGAGGATATGTGAAATGCATTGAGTCCCTCGCAGCTCATGGGGCCAATATTGACTATAACATCAGCCATCTCGGAACA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000033756.3
CDS CCA 90 bp AGCCTTTGCCTTGATTCACAGATACTCCTGATTCTAGGAGCTTCTTaGCACAGGCTACTTGCTGGTTTTTACAAGCCACATACAGAGGTG +
Preference number: 5 (lower is better)
Translates to: SLCLDSQILLILGAS*HRLLAGFYKPHTEV
Trigger: CACCTCTGTATGTGGCTTGTAAAAACCAGCAAGTAGCCTGTGCCAAGAAGCTCCTAGAATCAGGAGTATCTGTGAATCAAGGCAAAGGCT
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000033756.3
CDS-3UTR CAA 90 bp TTATTTGAAACTCCAGTGGTAAGAGTTTCAACACTGTTTTTCAGTTGCTTGCGAGATTCTAGGAGCTTCTaGGCACAGGCTACTTGCTGG +
Preference number: 5 (lower is better)
Translates to: LFETPVVRVSTLFFSCLRDSRSF*AQATCW
Trigger: CCAGCAAGTAGCCTGTGCCAAGAAGCTCCTAGAATC...TCGCAAGCAACTGAAAAACAGTGTTGAAACTCTTACCACTGGAGTTTCAAATAA
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000033756.3
CDS-3UTR CAA 90 bp CTTCATTTATTTGAAACTCCAGTGGTAAGAGTTTCAACACTGTTTTTCAGTTGCATCAGCATTCTTGGCTaGAGCGTTTGCTCCGAAATC +
Preference number: 5 (lower is better)
Translates to: LHLFETPVVRVSTLFFSCISILG*SVCSEI
Trigger: GATTTCGGAGCAAACGCTCAAGCCAAGAATGCTGAT...GCAACTGAAAAACAGTGTTGAAACTCTTACCACTGGAGTTTCAAATAAATGAAG
40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000033756.3
CDS GCA 72 bp ATGCCAAAGCATTTCCGGATTCTCAGGCGGCATAGCTaGCTCAAAGACTGGGGTCCTTCATTCTGCAAGAAG +
Preference number: 6 (lower is better)
Translates to: MPKHFRILRRHS*LKDWGPSFCKK
Trigger: CTTCTTGCAGAATGAAGGACCCCAGTCTTTGAGGCAGCTATGCCGCCTGAGAATCCGGAAATGCTTTGGCAT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000033756.3
CDS CCA 72 bp TCAATGCATTTCACATATCCTCTTTTAGCAGCCTCATaGATGGGAGAGGCCAGCTCAGTCTCAGGGTGGGGA +
Preference number: 6 (lower is better)
Translates to: SMHFTYPLLAAS*MGEASSVSGWG
Trigger: TCCCCACCCTGAGACTGAGCTGGCCTCTCCCATCCATGAGGCTGCTAAAAGAGGATATGTGAAATGCATTGA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000033756.3
CDS CCA 72 bp CTCAAAGACTGGGGTCCTTCATTCTGCAAGAAGATCTaGATCAAAGGACTCTCCAGAGGCACCAGGTCCACA +
Preference number: 6 (lower is better)
Translates to: LKDWGPSFCKKI*IKGLSRGTRST
Trigger: TGTGGACCTGGTGCCTCTGGAGAGTCCTTTGATCCAGATCTTCTTGCAGAATGAAGGACCCCAGTCTTTGAG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000033756.3
CDS TCA 72 bp TTCAGGTCTTCCGGGAGGAGGAGCTCAGAAATCTTATaGTGCTGCCGAATGCCAAAGCATTTCCGGATTCTC +
Preference number: 6 (lower is better)
Translates to: FRSSGRRSSEIL*CCRMPKHFRIL
Trigger: GAGAATCCGGAAATGCTTTGGCATTCGGCAGCATCATAAGATTTCTGAGCTCCTCCTCCCGGAAGACCTGAA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000033756.3
CDS GCA 72 bp CAGCAGATTCACACAGTCCTGACTGCCGCTGACACATaGATTAAACAAGGGAGTTCGCCAGTCTATGGTCAT +
Preference number: 6 (lower is better)
Translates to: QQIHTVLTAADT*IKQGSSPVYGH
Trigger: ATGACCATAGACTGGCGAACTCCCTTGTTTAATGCATGTGTCAGCGGCAGTCAGGACTGTGTGAATCTGCTG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000033756.3
CDS CCA 72 bp CTTGATTCACAGATACTCCTGATTCTAGGAGCTTCTTaGCACAGGCTACTTGCTGGTTTTTACAAGCCACAT +
Preference number: 6 (lower is better)
Translates to: LDSQILLILGAS*HRLLAGFYKPH
Trigger: ATGTGGCTTGTAAAAACCAGCAAGTAGCCTGTGCCAAGAAGCTCCTAGAATCAGGAGTATCTGTGAATCAAG
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000033756.3
CDS GCA 72 bp ATGGCTGATGTTATAGTCAATATTGGCCCCATGAGCTaGGAGGGACTCAATGCATTTCACATATCCTCTTTT +
Preference number: 6 (lower is better)
Translates to: MADVIVNIGPMS*EGLNAFHISSF
Trigger: AAAAGAGGATATGTGAAATGCATTGAGTCCCTCGCAGCTCATGGGGCCAATATTGACTATAACATCAGCCAT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000033756.3