Pregenerated sensors for ASB9 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000031384Ensembl transcript IDs: ENSMUST00000033756.3
Found 43 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS-3UTR CCA 90 bp | AGTGGTAAGAGTTTCAACACTGTTTTTCAGTTGCTTGCGAATCCAGTCCCTCCAGTGAGGAGAGCCTCCTaGCCTGTCACTCCTGCCCCT | + |
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Preference number: 4 (lower is better) Translates to: SGKSFNTVFQLLANPVPPVRRAS*PVTPAP Trigger: AGGGGCAGGAGTGACAGGCCAGGAGGCTCTCCTCAC...TGGAGGGACTGGATTCGCAAGCAACTGAAAAACAGTGTTGAAACTCTTACCACT 52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000033756.3 |
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| CDS-3UTR TCA 90 bp | AGTGGTAAGAGTTTCAACACTGTTTTTCAGTTGCTTGCGAATCCAGTCCCTCCAAGGACAGGTGACCTCTaGGGCATGCTTCATGGAGGG | + |
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Preference number: 4 (lower is better) Translates to: SGKSFNTVFQLLANPVPPRTGDL*GMLHGG Trigger: CCCTCCATGAAGCATGCCTCAGAGGTCACCTGTCCT...TGGAGGGACTGGATTCGCAAGCAACTGAAAAACAGTGTTGAAACTCTTACCACT 50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000033756.3 |
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| CDS-3UTR CCA 90 bp | GGTAAGAGTTTCAACACTGTTTTTCAGTTGCTTGCGAATCCAGTCCCTCCACAAAGCTCAGTCTCAGGGTaGGGAGTGGCTCCATGCTGT | + |
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Preference number: 4 (lower is better) Translates to: GKSFNTVFQLLANPVPPQSSVSG*GVAPCC Trigger: ACAGCATGGAGCCACTCCCCACCCTGAGACTGAGCT...TTGTGGAGGGACTGGATTCGCAAGCAACTGAAAAACAGTGTTGAAACTCTTACC 50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000033756.3 |
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| CDS-3UTR GCA 90 bp | TCCAGTGGTAAGAGTTTCAACACTGTTTTTCAGTTGCTTGCGAATCCAGTCCCTCTGGCCTGTCACTCCTaGCCCTTTGTTCACCATCCA | + |
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Preference number: 4 (lower is better) Translates to: SSGKSFNTVFQLLANPVPLACHS*PFVHHP Trigger: TGGATGGTGAACAAAGGGGCAGGAGTGACAGGCCAG...AGGGACTGGATTCGCAAGCAACTGAAAAACAGTGTTGAAACTCTTACCACTGGA 49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000033756.3 |
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| CDS-3UTR TCA 90 bp | TCCAGTGGTAAGAGTTTCAACACTGTTTTTCAGTTGCTTGCGAATCCAGTCCCTTTGCTCCGAAATCCATaGGCAGATGCACCAGCTCCA | + |
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Preference number: 4 (lower is better) Translates to: SSGKSFNTVFQLLANPVPLLRNP*ADAPAP Trigger: TGGAGCTGGTGCATCTGCTCATGGATTTCGGAGCAA...AGGGACTGGATTCGCAAGCAACTGAAAAACAGTGTTGAAACTCTTACCACTGGA 48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000033756.3 |
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| CDS-3UTR TCA 90 bp | GAAACTCCAGTGGTAAGAGTTTCAACACTGTTTTTCAGTTGCTTGCGAATCCAGATCCTGGCCACTACGTaGAGAGGAGAATCCAAGCCT | + |
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Preference number: 4 (lower is better) Translates to: ETPVVRVSTLFFSCLRIQILATT*RGESKP Trigger: AGGCTTGGATTCTCCTCTTCACGTAGTGGCCAGGAT...CTGGATTCGCAAGCAACTGAAAAACAGTGTTGAAACTCTTACCACTGGAGTTTC 47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000033756.3 |
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| CDS-3UTR CCA 90 bp | GGTAAGAGTTTCAACACTGTTTTTCAGTTGCTTGCGAATCCAGTCCCTCCACAAGAGTTCGCCAGTCTATaGTCATGCCATTCACCTGAG | + |
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Preference number: 4 (lower is better) Translates to: GKSFNTVFQLLANPVPPQEFASL*SCHSPE Trigger: CTCAGGTGAATGGCATGACCATAGACTGGCGAACTC...TTGTGGAGGGACTGGATTCGCAAGCAACTGAAAAACAGTGTTGAAACTCTTACC 47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000033756.3 |
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| CDS-3UTR TCA 90 bp | GTGGTAAGAGTTTCAACACTGTTTTTCAGTTGCTTGCGAATCCAGTCCCTCCACAGCTCAGAAATCTTATaGTGCTGCCGAATGCCAAAG | + |
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Preference number: 4 (lower is better) Translates to: VVRVSTLFFSCLRIQSLHSSEIL*CCRMPK Trigger: CTTTGGCATTCGGCAGCATCATAAGATTTCTGAGCT...GTGGAGGGACTGGATTCGCAAGCAACTGAAAAACAGTGTTGAAACTCTTACCAC 46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000033756.3 |
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| CDS-3UTR GCA 90 bp | GGTAAGAGTTTCAACACTGTTTTTCAGTTGCTTGCGAATCCAGTCCCTCCACAAACTGCCGCTGACACATaGATTAAACAAGGGAGTTCG | + |
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Preference number: 4 (lower is better) Translates to: GKSFNTVFQLLANPVPPQTAADT*IKQGSS Trigger: CGAACTCCCTTGTTTAATGCATGTGTCAGCGGCAGT...TTGTGGAGGGACTGGATTCGCAAGCAACTGAAAAACAGTGTTGAAACTCTTACC 46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000033756.3 |
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| CDS-3UTR CCA 90 bp | GGTAAGAGTTTCAACACTGTTTTTCAGTTGCTTGCGAATCCAGTCCCTCCACAATGTTATAGTCAATATTaGCCCCATGAGCTGCGAGGG | + |
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Preference number: 4 (lower is better) Translates to: GKSFNTVFQLLANPVPPQCYSQY*PHELRG Trigger: CCCTCGCAGCTCATGGGGCCAATATTGACTATAACA...TTGTGGAGGGACTGGATTCGCAAGCAACTGAAAAACAGTGTTGAAACTCTTACC 46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000033756.3 |
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| CDS-3UTR TCA 90 bp | CTTCATTTATTTGAAACTCCAGTGGTAAGAGTTTCAACACTGTTTTTCAGTTGCGAAAGGAATGGTAGGTaGGGAGAGCCTCCTGGCCTG | + |
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Preference number: 4 (lower is better) Translates to: LHLFETPVVRVSTLFFSCERNGR*GEPPGL Trigger: CAGGCCAGGAGGCTCTCCTCACCTACCATTCCTTTC...GCAACTGAAAAACAGTGTTGAAACTCTTACCACTGGAGTTTCAAATAAATGAAG 44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000033756.3 |
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| CDS-3UTR TCA 90 bp | GGTAAGAGTTTCAACACTGTTTTTCAGTTGCTTGCGAATCCAGTCCCTCCACAATCCAAGCCTTTGCCTTaGTTCACAGATACTCCTGAT | + |
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Preference number: 4 (lower is better) Translates to: GKSFNTVFQLLANPVPPQSKPLP*FTDTPD Trigger: ATCAGGAGTATCTGTGAATCAAGGCAAAGGCTTGGA...TTGTGGAGGGACTGGATTCGCAAGCAACTGAAAAACAGTGTTGAAACTCTTACC 44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000033756.3 |
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| CDS-3UTR GCA 90 bp | GGTAAGAGTTTCAACACTGTTTTTCAGTTGCTTGCGAATCCAGTCCCTCCACAATATGATGCTGCCGAATaGCAAAGCATTTCCGGATTC | + |
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Preference number: 4 (lower is better) Translates to: GKSFNTVFQLLANPVPPQYDAAE*QSISGF Trigger: GAATCCGGAAATGCTTTGGCATTCGGCAGCATCATA...TTGTGGAGGGACTGGATTCGCAAGCAACTGAAAAACAGTGTTGAAACTCTTACC 44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000033756.3 |
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| CDS-3UTR TCA 90 bp | TTATTTGAAACTCCAGTGGTAAGAGTTTCAACACTGTTTTTCAGTTGCTTGCGAAGATTCACACAGTCCTaGCTGCCGCTGACACATGCA | + |
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Preference number: 4 (lower is better) Translates to: LFETPVVRVSTLFFSCLRRFTQS*LPLTHA Trigger: TGCATGTGTCAGCGGCAGTCAGGACTGTGTGAATCT...TCGCAAGCAACTGAAAAACAGTGTTGAAACTCTTACCACTGGAGTTTCAAATAA 43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000033756.3 |
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| CDS-3UTR GCA 90 bp | CATTTATTTGAAACTCCAGTGGTAAGAGTTTCAACACTGTTTTTCAGTTGCTTGGTGACCTCTGAGGCATaGTTCATGGAGGGGAGACAC | + |
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Preference number: 4 (lower is better) Translates to: HLFETPVVRVSTLFFSCLVTSEA*FMEGRH Trigger: GTGTCTCCCCTCCATGAAGCATGCCTCAGAGGTCAC...CAAGCAACTGAAAAACAGTGTTGAAACTCTTACCACTGGAGTTTCAAATAAATG 43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000033756.3 |
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| CDS-3UTR GCA 90 bp | TTTGAAACTCCAGTGGTAAGAGTTTCAACACTGTTTTTCAGTTGCTTGCGAATCGCCAGTCTATGGTCATaGCATTCACCTGAGCTCCAT | + |
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Preference number: 4 (lower is better) Translates to: FETPVVRVSTLFFSCLRIASLWS*HSPELH Trigger: ATGGAGCTCAGGTGAATGGCATGACCATAGACTGGC...GATTCGCAAGCAACTGAAAAACAGTGTTGAAACTCTTACCACTGGAGTTTCAAA 43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000033756.3 |
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| CDS-3UTR GCA 90 bp | TCCAGTGGTAAGAGTTTCAACACTGTTTTTCAGTTGCTTGCGAATCCAGTCCCTGAGAATCCAAGCCTTTaGCTTGATTCACAGATACTC | + |
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Preference number: 4 (lower is better) Translates to: SSGKSFNTVFQLLANPVPENPSL*LDSQIL Trigger: GAGTATCTGTGAATCAAGGCAAAGGCTTGGATTCTC...AGGGACTGGATTCGCAAGCAACTGAAAAACAGTGTTGAAACTCTTACCACTGGA 43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000033756.3 |
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| CDS-3UTR CCA 90 bp | AGTGGTAAGAGTTTCAACACTGTTTTTCAGTTGCTTGCGAATCCAGTCCCTCCATTCTGCAAGAAGATCTaGATCAAAGGACTCTCCAGA | + |
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Preference number: 4 (lower is better) Translates to: SGKSFNTVFQLLANPVPPFCKKI*IKGLSR Trigger: TCTGGAGAGTCCTTTGATCCAGATCTTCTTGCAGAA...TGGAGGGACTGGATTCGCAAGCAACTGAAAAACAGTGTTGAAACTCTTACCACT 43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000033756.3 |
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| CDS-3UTR TCA 90 bp | CTTCATTTATTTGAAACTCCAGTGGTAAGAGTTTCAACACTGTTTTTCAGTTGCTCAATATTGGCCCCATaGGCTGCGAGGGACTCAATG | + |
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Preference number: 4 (lower is better) Translates to: LHLFETPVVRVSTLFFSCSILAP*AARDSM Trigger: CATTGAGTCCCTCGCAGCTCATGGGGCCAATATTGA...GCAACTGAAAAACAGTGTTGAAACTCTTACCACTGGAGTTTCAAATAAATGAAG 42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000033756.3 |
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| CDS-3UTR CCA 90 bp | CTTCATTTATTTGAAACTCCAGTGGTAAGAGTTTCAACACTGTTTTTCAGTTGCCTTTTAGCAGCCTCATaGATGGGAGAGGCCAGCTCA | + |
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Preference number: 4 (lower is better) Translates to: LHLFETPVVRVSTLFFSCLLAAS*MGEASS Trigger: TGAGCTGGCCTCTCCCATCCATGAGGCTGCTAAAAG...GCAACTGAAAAACAGTGTTGAAACTCTTACCACTGGAGTTTCAAATAAATGAAG 42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000033756.3 |
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| CDS-3UTR CCA 90 bp | TTTGAAACTCCAGTGGTAAGAGTTTCAACACTGTTTTTCAGTTGCTTGCGAATCATTCTAGGAGCTTCTTaGCACAGGCTACTTGCTGGT | + |
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Preference number: 4 (lower is better) Translates to: FETPVVRVSTLFFSCLRIILGAS*HRLLAG Trigger: ACCAGCAAGTAGCCTGTGCCAAGAAGCTCCTAGAAT...GATTCGCAAGCAACTGAAAAACAGTGTTGAAACTCTTACCACTGGAGTTTCAAA 42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000033756.3 |
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| CDS-3UTR GCA 90 bp | CATTTATTTGAAACTCCAGTGGTAAGAGTTTCAACACTGTTTTTCAGTTGCTTGATTGGCCCCATGAGCTaGGAGGGACTCAATGCATTT | + |
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Preference number: 4 (lower is better) Translates to: HLFETPVVRVSTLFFSCLIGPMS*EGLNAF Trigger: AAATGCATTGAGTCCCTCGCAGCTCATGGGGCCAAT...CAAGCAACTGAAAAACAGTGTTGAAACTCTTACCACTGGAGTTTCAAATAAATG 41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000033756.3 |
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| CDS-3UTR CCA 90 bp | CTTCATTTATTTGAAACTCCAGTGGTAAGAGTTTCAACACTGTTTTTCAGTTGCTTTACAGGCCAACCCTaGCTGATAAGGTTCCTCAGG | + |
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Preference number: 4 (lower is better) Translates to: LHLFETPVVRVSTLFFSCFTGQP*LIRFLR Trigger: CCTGAGGAACCTTATCAGCCAGGGTTGGCCTGTAAA...GCAACTGAAAAACAGTGTTGAAACTCTTACCACTGGAGTTTCAAATAAATGAAG 41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000033756.3 |
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| CDS-3UTR CCA 90 bp | CATTTATTTGAAACTCCAGTGGTAAGAGTTTCAACACTGTTTTTCAGTTGCTTGTGCCATCAGCATTCTTaGCTTGAGCGTTTGCTCCGA | + |
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Preference number: 4 (lower is better) Translates to: HLFETPVVRVSTLFFSCLCHQHS*LERLLR Trigger: TCGGAGCAAACGCTCAAGCCAAGAATGCTGATGGCA...CAAGCAACTGAAAAACAGTGTTGAAACTCTTACCACTGGAGTTTCAAATAAATG 41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000033756.3 |
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| CDS-3UTR GCA 90 bp | CATTTATTTGAAACTCCAGTGGTAAGAGTTTCAACACTGTTTTTCAGTTGCTTGCAGACATCCGTGGATTaGAGCATCATGAAGAGGAGA | + |
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Preference number: 4 (lower is better) Translates to: HLFETPVVRVSTLFFSCLQTSVD*SIMKRR Trigger: TCTCCTCTTCATGATGCTGCAATCCACGGATGTCTG...CAAGCAACTGAAAAACAGTGTTGAAACTCTTACCACTGGAGTTTCAAATAAATG 40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000033756.3 |
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| CDS-3UTR GCA 90 bp | CTTCATTTATTTGAAACTCCAGTGGTAAGAGTTTCAACACTGTTTTTCAGTTGCTGGGGTCCTTCATTCTaGAAGAAGATCTGGATCAAA | + |
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Preference number: 4 (lower is better) Translates to: LHLFETPVVRVSTLFFSCWGPSF*KKIWIK Trigger: TTTGATCCAGATCTTCTTGCAGAATGAAGGACCCCA...GCAACTGAAAAACAGTGTTGAAACTCTTACCACTGGAGTTTCAAATAAATGAAG 38% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000033756.3 |
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| CDS CCA 90 bp | GCGAGGGACTCAATGCATTTCACATATCCTCTTTTAGCAGCCTCATaGATGGGAGAGGCCAGCTCAGTCTCAGGGTGGGGAGTGGCTCCA | + |
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Preference number: 5 (lower is better) Translates to: ARDSMHFTYPLLAAS*MGEASSVSGWGVAP Trigger: TGGAGCCACTCCCCACCCTGAGACTGAGCTGGCCTCTCCCATCCATGAGGCTGCTAAAAGAGGATATGTGAAATGCATTGAGTCCCTCGC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000033756.3 |
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| CDS TCA 90 bp | AGGAAGCGCTTCAGGTCTTCCGGGAGGAGGAGCTCAGAAATCTTATaGTGCTGCCGAATGCCAAAGCATTTCCGGATTCTCAGGCGGCAT | + |
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Preference number: 5 (lower is better) Translates to: RKRFRSSGRRSSEIL*CCRMPKHFRILRRH Trigger: ATGCCGCCTGAGAATCCGGAAATGCTTTGGCATTCGGCAGCATCATAAGATTTCTGAGCTCCTCCTCCCGGAAGACCTGAAGCGCTTCCT 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000033756.3 |
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| CDS GCA 90 bp | ATTCTCAGGCGGCATAGCTGCCTCAAAGACTGGGGTCCTTCATTCTaGAAGAAGATCTGGATCAAAGGACTCTCCAGAGGCACCAGGTCC | + |
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Preference number: 5 (lower is better) Translates to: ILRRHSCLKDWGPSF*KKIWIKGLSRGTRS Trigger: GGACCTGGTGCCTCTGGAGAGTCCTTTGATCCAGATCTTCTTGCAGAATGAAGGACCCCAGTCTTTGAGGCAGCTATGCCGCCTGAGAAT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000033756.3 |
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| CDS CCA 90 bp | CATAGCTGCCTCAAAGACTGGGGTCCTTCATTCTGCAAGAAGATCTaGATCAAAGGACTCTCCAGAGGCACCAGGTCCACAGGACGTTTG | + |
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Preference number: 5 (lower is better) Translates to: HSCLKDWGPSFCKKI*IKGLSRGTRSTGRL Trigger: CAAACGTCCTGTGGACCTGGTGCCTCTGGAGAGTCCTTTGATCCAGATCTTCTTGCAGAATGAAGGACCCCAGTCTTTGAGGCAGCTATG 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000033756.3 |
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| CDS CCA 90 bp | CCAAAGCATTTCCGGATTCTCAGGCGGCATAGCTGCCTCAAAGACTaGGGTCCTTCATTCTGCAAGAAGATCTGGATCAAAGGACTCTCC | + |
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Preference number: 5 (lower is better) Translates to: PKHFRILRRHSCLKD*GPSFCKKIWIKGLS Trigger: GGAGAGTCCTTTGATCCAGATCTTCTTGCAGAATGAAGGACCCCAGTCTTTGAGGCAGCTATGCCGCCTGAGAATCCGGAAATGCTTTGG 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000033756.3 |
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| CDS GCA 90 bp | CACTGGACATCCTGGCCACTACGTGAAGAGGAGAATCCAAGCCTTTaGCTTGATTCACAGATACTCCTGATTCTAGGAGCTTCTTGGCAC | + |
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Preference number: 5 (lower is better) Translates to: HWTSWPLREEENPSL*LDSQILLILGASWH Trigger: GTGCCAAGAAGCTCCTAGAATCAGGAGTATCTGTGAATCAAGGCAAAGGCTTGGATTCTCCTCTTCACGTAGTGGCCAGGATGTCCAGTG 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000033756.3 |
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| CDS GCA 90 bp | TGTTCCGAGATGGCTGATGTTATAGTCAATATTGGCCCCATGAGCTaGGAGGGACTCAATGCATTTCACATATCCTCTTTTAGCAGCCTC | + |
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Preference number: 5 (lower is better) Translates to: CSEMADVIVNIGPMS*EGLNAFHISSFSSL Trigger: GAGGCTGCTAAAAGAGGATATGTGAAATGCATTGAGTCCCTCGCAGCTCATGGGGCCAATATTGACTATAACATCAGCCATCTCGGAACA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000033756.3 |
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| CDS CCA 90 bp | AGCCTTTGCCTTGATTCACAGATACTCCTGATTCTAGGAGCTTCTTaGCACAGGCTACTTGCTGGTTTTTACAAGCCACATACAGAGGTG | + |
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Preference number: 5 (lower is better) Translates to: SLCLDSQILLILGAS*HRLLAGFYKPHTEV Trigger: CACCTCTGTATGTGGCTTGTAAAAACCAGCAAGTAGCCTGTGCCAAGAAGCTCCTAGAATCAGGAGTATCTGTGAATCAAGGCAAAGGCT 47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000033756.3 |
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| CDS-3UTR CAA 90 bp | TTATTTGAAACTCCAGTGGTAAGAGTTTCAACACTGTTTTTCAGTTGCTTGCGAGATTCTAGGAGCTTCTaGGCACAGGCTACTTGCTGG | + |
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Preference number: 5 (lower is better) Translates to: LFETPVVRVSTLFFSCLRDSRSF*AQATCW Trigger: CCAGCAAGTAGCCTGTGCCAAGAAGCTCCTAGAATC...TCGCAAGCAACTGAAAAACAGTGTTGAAACTCTTACCACTGGAGTTTCAAATAA 43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000033756.3 |
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| CDS-3UTR CAA 90 bp | CTTCATTTATTTGAAACTCCAGTGGTAAGAGTTTCAACACTGTTTTTCAGTTGCATCAGCATTCTTGGCTaGAGCGTTTGCTCCGAAATC | + |
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Preference number: 5 (lower is better) Translates to: LHLFETPVVRVSTLFFSCISILG*SVCSEI Trigger: GATTTCGGAGCAAACGCTCAAGCCAAGAATGCTGAT...GCAACTGAAAAACAGTGTTGAAACTCTTACCACTGGAGTTTCAAATAAATGAAG 40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000033756.3 |
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| CDS GCA 72 bp | ATGCCAAAGCATTTCCGGATTCTCAGGCGGCATAGCTaGCTCAAAGACTGGGGTCCTTCATTCTGCAAGAAG | + |
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Preference number: 6 (lower is better) Translates to: MPKHFRILRRHS*LKDWGPSFCKK Trigger: CTTCTTGCAGAATGAAGGACCCCAGTCTTTGAGGCAGCTATGCCGCCTGAGAATCCGGAAATGCTTTGGCAT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000033756.3 |
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| CDS CCA 72 bp | TCAATGCATTTCACATATCCTCTTTTAGCAGCCTCATaGATGGGAGAGGCCAGCTCAGTCTCAGGGTGGGGA | + |
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Preference number: 6 (lower is better) Translates to: SMHFTYPLLAAS*MGEASSVSGWG Trigger: TCCCCACCCTGAGACTGAGCTGGCCTCTCCCATCCATGAGGCTGCTAAAAGAGGATATGTGAAATGCATTGA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000033756.3 |
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| CDS CCA 72 bp | CTCAAAGACTGGGGTCCTTCATTCTGCAAGAAGATCTaGATCAAAGGACTCTCCAGAGGCACCAGGTCCACA | + |
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Preference number: 6 (lower is better) Translates to: LKDWGPSFCKKI*IKGLSRGTRST Trigger: TGTGGACCTGGTGCCTCTGGAGAGTCCTTTGATCCAGATCTTCTTGCAGAATGAAGGACCCCAGTCTTTGAG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000033756.3 |
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| CDS TCA 72 bp | TTCAGGTCTTCCGGGAGGAGGAGCTCAGAAATCTTATaGTGCTGCCGAATGCCAAAGCATTTCCGGATTCTC | + |
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Preference number: 6 (lower is better) Translates to: FRSSGRRSSEIL*CCRMPKHFRIL Trigger: GAGAATCCGGAAATGCTTTGGCATTCGGCAGCATCATAAGATTTCTGAGCTCCTCCTCCCGGAAGACCTGAA 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000033756.3 |
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| CDS GCA 72 bp | CAGCAGATTCACACAGTCCTGACTGCCGCTGACACATaGATTAAACAAGGGAGTTCGCCAGTCTATGGTCAT | + |
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Preference number: 6 (lower is better) Translates to: QQIHTVLTAADT*IKQGSSPVYGH Trigger: ATGACCATAGACTGGCGAACTCCCTTGTTTAATGCATGTGTCAGCGGCAGTCAGGACTGTGTGAATCTGCTG 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000033756.3 |
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| CDS CCA 72 bp | CTTGATTCACAGATACTCCTGATTCTAGGAGCTTCTTaGCACAGGCTACTTGCTGGTTTTTACAAGCCACAT | + |
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Preference number: 6 (lower is better) Translates to: LDSQILLILGAS*HRLLAGFYKPH Trigger: ATGTGGCTTGTAAAAACCAGCAAGTAGCCTGTGCCAAGAAGCTCCTAGAATCAGGAGTATCTGTGAATCAAG 44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000033756.3 |
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| CDS GCA 72 bp | ATGGCTGATGTTATAGTCAATATTGGCCCCATGAGCTaGGAGGGACTCAATGCATTTCACATATCCTCTTTT | + |
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Preference number: 6 (lower is better) Translates to: MADVIVNIGPMS*EGLNAFHISSF Trigger: AAAAGAGGATATGTGAAATGCATTGAGTCCCTCGCAGCTCATGGGGCCAATATTGACTATAACATCAGCCAT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000033756.3 |
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