Pregenerated sensors for ASB5 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000031519Ensembl transcript IDs: ENSMUST00000033918.4, ENSMUST00000239106.2, ENSMUST00000239152.2, ENSMUST00000239166.2
Found 70 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS-3UTR TCA 90 bp | ATTTTACGGCTTTGCTGGGTGAACTTATATGCATCATCACCCTTATCTTCTATAAGCTTCATGCAGTGGTaGTCGATCTGCCCAGGATCC | + |
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Preference number: 4 (lower is better) Translates to: ILRLCWVNLYASSPLSSISFMQW*SICPGS Trigger: GGATCCTGGGCAGATCGATCACCACTGCATGAAGCT...TATAGAAGATAAGGGTGATGATGCATATAAGTTCACCCAGCAAAGCCGTAAAAT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000033918.4 ENSMUST00000239106.2 ENSMUST00000239166.2 |
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| CDS-3UTR GCA 90 bp | ATTTTACGGCTTTGCTGGGTGAACTTATATGCATCATCACCCTTATCTTCTATACTCAGCTGCTATCCTTaGGGCTTCCTTTCGGTTGCC | + |
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Preference number: 4 (lower is better) Translates to: ILRLCWVNLYASSPLSSILSCYP*GFLSVA Trigger: GGCAACCGAAAGGAAGCCGCAAGGATAGCAGCTGAG...TATAGAAGATAAGGGTGATGATGCATATAAGTTCACCCAGCAAAGCCGTAAAAT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000033918.4 |
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| CDS-3UTR TCA 90 bp | ATTTTACGGCTTTGCTGGGTGAACTTATATGCATCATCACCCTTATCTTCTATACTTGTGAGCATGCGTTaGACAAGGGAGTCACGCCAT | + |
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Preference number: 4 (lower is better) Translates to: ILRLCWVNLYASSPLSSILVSMR*TRESRH Trigger: ATGGCGTGACTCCCTTGTTCAACGCATGCTCACAAG...TATAGAAGATAAGGGTGATGATGCATATAAGTTCACCCAGCAAAGCCGTAAAAT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000033918.4 ENSMUST00000239106.2 ENSMUST00000239166.2 |
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| CDS-3UTR GCA 90 bp | ATTTTACGGCTTTGCTGGGTGAACTTATATGCATCATCACCCTTATCTTCTATAGCGTGTCCCAGTACTTaGCTTTGTGCACATCAGCAC | + |
|
Preference number: 4 (lower is better) Translates to: ILRLCWVNLYASSPLSSIACPST*LCAHQH Trigger: GTGCTGATGTGCACAAAGGCAAGTACTGGGACACGC...TATAGAAGATAAGGGTGATGATGCATATAAGTTCACCCAGCAAAGCCGTAAAAT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000033918.4 ENSMUST00000239106.2 ENSMUST00000239152.2 ENSMUST00000239166.2 |
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| CDS-3UTR CCA 90 bp | ATTTTACGGCTTTGCTGGGTGAACTTATATGCATCATCACCCTTATCTTCTATACAGAGTCGGCACAGTTaGCAAAGAGAGCTTGGGGTA | + |
|
Preference number: 4 (lower is better) Translates to: ILRLCWVNLYASSPLSSIQSRHS*QRELGV Trigger: TACCCCAAGCTCTCTTTGCCAACTGTGCCGACTCTG...TATAGAAGATAAGGGTGATGATGCATATAAGTTCACCCAGCAAAGCCGTAAAAT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 4 transcripts: ENSMUST00000033918.4 ENSMUST00000239106.2 ENSMUST00000239152.2 ENSMUST00000239166.2 |
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| CDS-3UTR TCA 90 bp | ATTTTACGGCTTTGCTGGGTGAACTTATATGCATCATCACCCTTATCTTCTATATCGAGACATTCATGGTaGCCTTTACTGGCAGCCTCA | + |
|
Preference number: 4 (lower is better) Translates to: ILRLCWVNLYASSPLSSISRHSW*PLLAAS Trigger: TGAGGCTGCCAGTAAAGGTCACCATGAATGTCTCGA...TATAGAAGATAAGGGTGATGATGCATATAAGTTCACCCAGCAAAGCCGTAAAAT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000033918.4 ENSMUST00000239106.2 ENSMUST00000239166.2 |
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| CDS-3UTR GCA 90 bp | ATTTTACGGCTTTGCTGGGTGAACTTATATGCATCATCACCCTTATCTTCTATAGCCATCTATGGTGATTaGGTTTGCATTAGCCCCAGC | + |
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Preference number: 4 (lower is better) Translates to: ILRLCWVNLYASSPLSSIAIYGD*VCISPS Trigger: GCTGGGGCTAATGCAAACGCAATCACCATAGATGGC...TATAGAAGATAAGGGTGATGATGCATATAAGTTCACCCAGCAAAGCCGTAAAAT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000033918.4 ENSMUST00000239106.2 ENSMUST00000239166.2 |
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| CDS-3UTR CCA 90 bp | ATTTTACGGCTTTGCTGGGTGAACTTATATGCATCATCACCCTTATCTTCTATAGGCAGCCTCATGTGTTaGAGATGGAAAACAGGACTC | + |
|
Preference number: 4 (lower is better) Translates to: ILRLCWVNLYASSPLSSIGSLMC*RWKTGL Trigger: GAGTCCTGTTTTCCATCTCCAACACATGAGGCTGCC...TATAGAAGATAAGGGTGATGATGCATATAAGTTCACCCAGCAAAGCCGTAAAAT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000033918.4 ENSMUST00000239106.2 ENSMUST00000239166.2 |
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| CDS-3UTR CCA 90 bp | ATTTTACGGCTTTGCTGGGTGAACTTATATGCATCATCACCCTTATCTTCTATACATGGTGACCTTTACTaGCAGCCTCATGTGTTGGAG | + |
|
Preference number: 4 (lower is better) Translates to: ILRLCWVNLYASSPLSSIHGDLY*QPHVLE Trigger: CTCCAACACATGAGGCTGCCAGTAAAGGTCACCATG...TATAGAAGATAAGGGTGATGATGCATATAAGTTCACCCAGCAAAGCCGTAAAAT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000033918.4 ENSMUST00000239106.2 ENSMUST00000239166.2 |
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| CDS-3UTR TCA 90 bp | ATTTTACGGCTTTGCTGGGTGAACTTATATGCATCATCACCCTTATCTTCTATAAGAGGAGTTCCCAAGTaGGGTATGTCTTGGTCAACA | + |
|
Preference number: 4 (lower is better) Translates to: ILRLCWVNLYASSPLSSIRGVPK*GMSWST Trigger: TGTTGACCAAGACATACCTCACTTGGGAACTCCTCT...TATAGAAGATAAGGGTGATGATGCATATAAGTTCACCCAGCAAAGCCGTAAAAT 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000033918.4 ENSMUST00000239106.2 ENSMUST00000239166.2 |
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| CDS-3UTR CCA 90 bp | ATTTTACGGCTTTGCTGGGTGAACTTATATGCATCATCACCCTTATCTTCTATAAAACAGGACTCCAGTTaGGCTTTGGCACCATATTCC | + |
|
Preference number: 4 (lower is better) Translates to: ILRLCWVNLYASSPLSSIKQDSS*ALAPYS Trigger: GGAATATGGTGCCAAAGCCCAACTGGAGTCCTGTTT...TATAGAAGATAAGGGTGATGATGCATATAAGTTCACCCAGCAAAGCCGTAAAAT 41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000033918.4 ENSMUST00000239106.2 ENSMUST00000239166.2 |
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| CDS-3UTR CCA 90 bp | ATTTTACGGCTTTGCTGGGTGAACTTATATGCATCATCACCCTTATCTTCTATAACTCCAGTTGGGCTTTaGCACCATATTCCAAAAGGA | + |
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Preference number: 4 (lower is better) Translates to: ILRLCWVNLYASSPLSSITPVGL*HHIPKG Trigger: TCCTTTTGGAATATGGTGCCAAAGCCCAACTGGAGT...TATAGAAGATAAGGGTGATGATGCATATAAGTTCACCCAGCAAAGCCGTAAAAT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000033918.4 ENSMUST00000239106.2 ENSMUST00000239166.2 |
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| CDS-3UTR CCA 90 bp | ATTTTACGGCTTTGCTGGGTGAACTTATATGCATCATCACCCTTATCTTCTATACTCATGTGTTGGAGATaGAAAACAGGACTCCAGTTG | + |
|
Preference number: 4 (lower is better) Translates to: ILRLCWVNLYASSPLSSILMCWR*KTGLQL Trigger: CAACTGGAGTCCTGTTTTCCATCTCCAACACATGAG...TATAGAAGATAAGGGTGATGATGCATATAAGTTCACCCAGCAAAGCCGTAAAAT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000033918.4 ENSMUST00000239106.2 ENSMUST00000239166.2 |
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| CDS-3UTR TCA 90 bp | ATTTTACGGCTTTGCTGGGTGAACTTATATGCATCATCACCCTTATCTTCTATAGCAATGGAACTGCTGTaGCATACAAGCTACATAAAG | + |
|
Preference number: 4 (lower is better) Translates to: ILRLCWVNLYASSPLSSIAMELL*HTSYIK Trigger: CTTTATGTAGCTTGTATGTCACAGCAGTTCCATTGC...TATAGAAGATAAGGGTGATGATGCATATAAGTTCACCCAGCAAAGCCGTAAAAT 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000033918.4 ENSMUST00000239106.2 ENSMUST00000239166.2 |
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| CDS-3UTR TCA 90 bp | ATTTTACGGCTTTGCTGGGTGAACTTATATGCATCATCACCCTTATCTTCTATACTAGCTTTCTTTTCATaGGCATTTGCTCAATGCCGT | + |
|
Preference number: 4 (lower is better) Translates to: ILRLCWVNLYASSPLSSILAFFS*AFAQCR Trigger: ACGGCATTGAGCAAATGCTCATGAAAAGAAAGCTAG...TATAGAAGATAAGGGTGATGATGCATATAAGTTCACCCAGCAAAGCCGTAAAAT 39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000239166.2 |
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| CDS-3UTR GCA 90 bp | ATTTTACGGCTTTGCTGGGTGAACTTATATGCATCATCACCCTTATCTTCTATACTTGGTCAACATCTATaGCCCAGGCTATCAAAATGT | + |
|
Preference number: 4 (lower is better) Translates to: ILRLCWVNLYASSPLSSILGQHL*PRLSKC Trigger: ACATTTTGATAGCCTGGGGCATAGATGTTGACCAAG...TATAGAAGATAAGGGTGATGATGCATATAAGTTCACCCAGCAAAGCCGTAAAAT 39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000033918.4 ENSMUST00000239106.2 ENSMUST00000239166.2 |
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| CDS-3UTR GCA 90 bp | ATTTTACGGCTTTGCTGGGTGAACTTATATGCATCATCACCCTTATCTTCTATACTTTTCATGAGCATTTaGTCAATGCCGTTCCCTTCA | + |
|
Preference number: 4 (lower is better) Translates to: ILRLCWVNLYASSPLSSILFMSI*SMPFPS Trigger: TGAAGGGAACGGCATTGAGCAAATGCTCATGAAAAG...TATAGAAGATAAGGGTGATGATGCATATAAGTTCACCCAGCAAAGCCGTAAAAT 39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000239166.2 |
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| CDS-3UTR CCA 90 bp | ATTTTACGGCTTTGCTGGGTGAACTTATATGCATCATCACCCTTATCTTCTATATGGAGTGGAGTGACATaGTCTATGGTTACTGCATTT | + |
|
Preference number: 4 (lower is better) Translates to: ILRLCWVNLYASSPLSSIWSGVT*SMVTAF Trigger: AAATGCAGTAACCATAGACCATGTCACTCCACTCCA...TATAGAAGATAAGGGTGATGATGCATATAAGTTCACCCAGCAAAGCCGTAAAAT 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000033918.4 ENSMUST00000239106.2 ENSMUST00000239166.2 |
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| CDS-3UTR TCA 90 bp | ATTTTACGGCTTTGCTGGGTGAACTTATATGCATCATCACCCTTATCTTCTATACTGTGTTCTTTGCATTaGTGTCTGCTCCAAATTCTA | + |
|
Preference number: 4 (lower is better) Translates to: ILRLCWVNLYASSPLSSILCSLH*CLLQIL Trigger: TAGAATTTGGAGCAGACATCAATGCAAAGAACACAG...TATAGAAGATAAGGGTGATGATGCATATAAGTTCACCCAGCAAAGCCGTAAAAT 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000033918.4 ENSMUST00000239106.2 ENSMUST00000239152.2 ENSMUST00000239166.2 |
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| CDS-3UTR TCA 90 bp | ATTTTACGGCTTTGCTGGGTGAACTTATATGCATCATCACCCTTATCTTCTATAGGGGTAGCTTCATGTTaGAGAAGTATTCTTTCTACA | + |
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Preference number: 4 (lower is better) Translates to: ILRLCWVNLYASSPLSSIGVASC*RSILST Trigger: TGTAGAAAGAATACTTCTTCAACATGAAGCTACCCC...TATAGAAGATAAGGGTGATGATGCATATAAGTTCACCCAGCAAAGCCGTAAAAT 38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 4 transcripts: ENSMUST00000033918.4 ENSMUST00000239106.2 ENSMUST00000239152.2 ENSMUST00000239166.2 |
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| CDS-3UTR GCA 90 bp | ATTTTACGGCTTTGCTGGGTGAACTTATATGCATCATCACCCTTATCTTCTATAGAGATCTGTGTTCTTTaGATTGATGTCTGCTCCAAA | + |
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Preference number: 4 (lower is better) Translates to: ILRLCWVNLYASSPLSSIEICVL*IDVCSK Trigger: TTTGGAGCAGACATCAATGCAAAGAACACAGATCTC...TATAGAAGATAAGGGTGATGATGCATATAAGTTCACCCAGCAAAGCCGTAAAAT 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000033918.4 ENSMUST00000239106.2 ENSMUST00000239152.2 ENSMUST00000239166.2 |
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| CDS GCA 90 bp | TACTGGGTTGTTGAGCGGCAGCATGCAGTGGCGTGTCCCAGTACTTaGCTTTGTGCACATCAGCACCAGCATAAAGAAGCTTCCAGATGC | + |
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Preference number: 5 (lower is better) Translates to: YWVVERQHAVACPST*LCAHQHQHKEASRC Trigger: GCATCTGGAAGCTTCTTTATGCTGGTGCTGATGTGCACAAAGGCAAGTACTGGGACACGCCACTGCATGCTGCCGCTCAACAACCCAGTA 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000033918.4 ENSMUST00000239106.2 ENSMUST00000239152.2 ENSMUST00000239166.2 |
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| CDS TCA 90 bp | GCTCCAAATTCTAGCAGTAAGTTCACGATTTCGGTACTGGGTTGTTaGGCGGCAGCATGCAGTGGCGTGTCCCAGTACTTGCCTTTGTGC | + |
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Preference number: 5 (lower is better) Translates to: APNSSSKFTISVLGC*AAACSGVSQYLPLC Trigger: GCACAAAGGCAAGTACTGGGACACGCCACTGCATGCTGCCGCTCAACAACCCAGTACCGAAATCGTGAACTTACTGCTAGAATTTGGAGC 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000033918.4 ENSMUST00000239106.2 ENSMUST00000239152.2 ENSMUST00000239166.2 |
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| CDS TCA 90 bp | GGCACCATATTCCAAAAGGAGTTCTGCACAACTTGCGCTGCCTTGTaGGCATGCGTTGAACAAGGGAGTCACGCCATCTATGGTGATTGC | + |
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Preference number: 5 (lower is better) Translates to: GTIFQKEFCTTCAAL*ACVEQGSHAIYGDC Trigger: GCAATCACCATAGATGGCGTGACTCCCTTGTTCAACGCATGCTCACAAGGCAGCGCAAGTTGTGCAGAACTCCTTTTGGAATATGGTGCC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000033918.4 ENSMUST00000239106.2 ENSMUST00000239166.2 |
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| CDS CCA 90 bp | CAGCCTCATGTGTTGGAGATGGAAAACAGGACTCCAGTTGGGCTTTaGCACCATATTCCAAAAGGAGTTCTGCACAACTTGCGCTGCCTT | + |
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Preference number: 5 (lower is better) Translates to: QPHVLEMENRTPVGL*HHIPKGVLHNLRCL Trigger: AAGGCAGCGCAAGTTGTGCAGAACTCCTTTTGGAATATGGTGCCAAAGCCCAACTGGAGTCCTGTTTTCCATCTCCAACACATGAGGCTG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000033918.4 ENSMUST00000239106.2 ENSMUST00000239166.2 |
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| CDS GCA 90 bp | ATCTGCCCAGGATCCTTGTCCTTGGCTTACTCCATAAAACTCAGCTaGTATCCTTGCGGCTTCCTTTCGGTTGCCTTTCACGATGTAGAA | + |
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Preference number: 5 (lower is better) Translates to: ICPGSLSLAYSIKLS*YPCGFLSVAFHDVE Trigger: TTCTACATCGTGAAAGGCAACCGAAAGGAAGCCGCAAGGATAGCAGCTGAGTTTTATGGAGTAAGCCAAGGACAAGGATCCTGGGCAGAT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000033918.4 |
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| CDS CCA 90 bp | CAGGCCACGTGGTCACCTAGGCAGGCCTCATGGAGTGGAGTGACATaGTCTATGGTTACTGCATTTACATTATATCCTTGTGATAGCAAT | + |
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Preference number: 5 (lower is better) Translates to: QATWSPRQASWSGVT*SMVTAFTLYPCDSN Trigger: ATTGCTATCACAAGGATATAATGTAAATGCAGTAACCATAGACCATGTCACTCCACTCCATGAGGCCTGCCTAGGTGACCACGTGGCCTG 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000033918.4 ENSMUST00000239106.2 ENSMUST00000239166.2 |
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| CDS CCA 90 bp | GAGACATTCATGGTGACCTTTACTGGCAGCCTCATGTGTTGGAGATaGAAAACAGGACTCCAGTTGGGCTTTGGCACCATATTCCAAAAG | + |
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Preference number: 5 (lower is better) Translates to: ETFMVTFTGSLMCWR*KTGLQLGFGTIFQK Trigger: CTTTTGGAATATGGTGCCAAAGCCCAACTGGAGTCCTGTTTTCCATCTCCAACACATGAGGCTGCCAGTAAAGGTCACCATGAATGTCTC 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000033918.4 ENSMUST00000239106.2 ENSMUST00000239166.2 |
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| CDS TCA 90 bp | CAGAGTCGGCACAGTTGGCAAAGAGAGCTTGGGGTAGCTTCATGTTaGAGAAGTATTCTTTCTACAGCACTGTTAGATGTAGCCAAGTCG | + |
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Preference number: 5 (lower is better) Translates to: QSRHSWQRELGVASC*RSILSTALLDVAKS Trigger: CGACTTGGCTACATCTAACAGTGCTGTAGAAAGAATACTTCTTCAACATGAAGCTACCCCAAGCTCTCTTTGCCAACTGTGCCGACTCTG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000033918.4 ENSMUST00000239106.2 ENSMUST00000239152.2 ENSMUST00000239166.2 |
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| CDS-3UTR CAA 90 bp | ATTTTACGGCTTTGCTGGGTGAACTTATATGCATCATCACCCTTATCTTCTATATTCGGTACTGGGTTGTaGAGCGGCAGCATGCAGTGG | + |
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Preference number: 5 (lower is better) Translates to: ILRLCWVNLYASSPLSSIFGTGL*SGSMQW Trigger: CCACTGCATGCTGCCGCTCAACAACCCAGTACCGAA...TATAGAAGATAAGGGTGATGATGCATATAAGTTCACCCAGCAAAGCCGTAAAAT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000033918.4 ENSMUST00000239106.2 ENSMUST00000239152.2 ENSMUST00000239166.2 |
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| CDS-3UTR CAA 90 bp | ATTTTACGGCTTTGCTGGGTGAACTTATATGCATCATCACCCTTATCTTCTATAGCAGAGTCGGCACAGTaGGCAAAGAGAGCTTGGGGT | + |
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Preference number: 5 (lower is better) Translates to: ILRLCWVNLYASSPLSSIAESAQ*AKRAWG Trigger: ACCCCAAGCTCTCTTTGCCAACTGTGCCGACTCTGC...TATAGAAGATAAGGGTGATGATGCATATAAGTTCACCCAGCAAAGCCGTAAAAT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 4 transcripts: ENSMUST00000033918.4 ENSMUST00000239106.2 ENSMUST00000239152.2 ENSMUST00000239166.2 |
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| CDS TCA 90 bp | ATCAGCACCAGCATAAAGAAGCTTCCAGATGCAATGGAACTGCTGTaGCATACAAGCTACATAAAGAGGAGTTCCCAAGTGAGGTATGTC | + |
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Preference number: 5 (lower is better) Translates to: ISTSIKKLPDAMELL*HTSYIKRSSQVRYV Trigger: GACATACCTCACTTGGGAACTCCTCTTTATGTAGCTTGTATGTCACAGCAGTTCCATTGCATCTGGAAGCTTCTTTATGCTGGTGCTGAT 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000033918.4 ENSMUST00000239106.2 ENSMUST00000239166.2 |
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| CDS GCA 90 bp | CATAAAGAGGAGTTCCCAAGTGAGGTATGTCTTGGTCAACATCTATaGCCCAGGCTATCAAAATGTCGAGACATTCATGGTGACCTTTAC | + |
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Preference number: 5 (lower is better) Translates to: HKEEFPSEVCLGQHL*PRLSKCRDIHGDLY Trigger: GTAAAGGTCACCATGAATGTCTCGACATTTTGATAGCCTGGGGCATAGATGTTGACCAAGACATACCTCACTTGGGAACTCCTCTTTATG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000033918.4 ENSMUST00000239106.2 ENSMUST00000239166.2 |
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| CDS GCA 90 bp | ACTTGCCTTTGTGCACATCAGCACCAGCATAAAGAAGCTTCCAGATaGAATGGAACTGCTGTGACATACAAGCTACATAAAGAGGAGTTC | + |
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Preference number: 5 (lower is better) Translates to: TCLCAHQHQHKEASR*NGTAVTYKLHKEEF Trigger: GAACTCCTCTTTATGTAGCTTGTATGTCACAGCAGTTCCATTGCATCTGGAAGCTTCTTTATGCTGGTGCTGATGTGCACAAAGGCAAGT 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000033918.4 ENSMUST00000239106.2 ENSMUST00000239166.2 |
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| CDS-3UTR CAA 90 bp | ATTTTACGGCTTTGCTGGGTGAACTTATATGCATCATCACCCTTATCTTCTATAACTCAGCTGCTATCCTaGCGGCTTCCTTTCGGTTGC | + |
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Preference number: 5 (lower is better) Translates to: ILRLCWVNLYASSPLSSITQLLS*RLPFGC Trigger: GCAACCGAAAGGAAGCCGCAAGGATAGCAGCTGAGT...TATAGAAGATAAGGGTGATGATGCATATAAGTTCACCCAGCAAAGCCGTAAAAT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000033918.4 |
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| CDS-3UTR CAA 90 bp | ATTTTACGGCTTTGCTGGGTGAACTTATATGCATCATCACCCTTATCTTCTATATCCCAGTACTTGCCTTaGTGCACATCAGCACCAGCA | + |
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Preference number: 5 (lower is better) Translates to: ILRLCWVNLYASSPLSSISQYLP*CTSAPA Trigger: TGCTGGTGCTGATGTGCACAAAGGCAAGTACTGGGA...TATAGAAGATAAGGGTGATGATGCATATAAGTTCACCCAGCAAAGCCGTAAAAT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000033918.4 ENSMUST00000239106.2 ENSMUST00000239152.2 ENSMUST00000239166.2 |
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| CDS-3UTR CAA 90 bp | ATTTTACGGCTTTGCTGGGTGAACTTATATGCATCATCACCCTTATCTTCTATAATCTGCCCAGGATCCTaGTCCTTGGCTTACTCCATA | + |
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Preference number: 5 (lower is better) Translates to: ILRLCWVNLYASSPLSSIICPGS*SLAYSI Trigger: TATGGAGTAAGCCAAGGACAAGGATCCTGGGCAGAT...TATAGAAGATAAGGGTGATGATGCATATAAGTTCACCCAGCAAAGCCGTAAAAT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000033918.4 |
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| CDS-3UTR CAA 90 bp | ATTTTACGGCTTTGCTGGGTGAACTTATATGCATCATCACCCTTATCTTCTATATGGCAGCCTCATGTGTaGGAGATGGAAAACAGGACT | + |
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Preference number: 5 (lower is better) Translates to: ILRLCWVNLYASSPLSSIWQPHV*EMENRT Trigger: AGTCCTGTTTTCCATCTCCAACACATGAGGCTGCCA...TATAGAAGATAAGGGTGATGATGCATATAAGTTCACCCAGCAAAGCCGTAAAAT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000033918.4 ENSMUST00000239106.2 ENSMUST00000239166.2 |
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| CDS-3UTR CAA 90 bp | ATTTTACGGCTTTGCTGGGTGAACTTATATGCATCATCACCCTTATCTTCTATACCAGGATCCTTGTCCTaGGCTTACTCCATAAAACTC | + |
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Preference number: 5 (lower is better) Translates to: ILRLCWVNLYASSPLSSIPGSLS*AYSIKL Trigger: GAGTTTTATGGAGTAAGCCAAGGACAAGGATCCTGG...TATAGAAGATAAGGGTGATGATGCATATAAGTTCACCCAGCAAAGCCGTAAAAT 41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000033918.4 |
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| CDS-3UTR CAA 90 bp | ATTTTACGGCTTTGCTGGGTGAACTTATATGCATCATCACCCTTATCTTCTATAAAAACAGGACTCCAGTaGGGCTTTGGCACCATATTC | + |
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Preference number: 5 (lower is better) Translates to: ILRLCWVNLYASSPLSSIKTGLQ*GFGTIF Trigger: GAATATGGTGCCAAAGCCCAACTGGAGTCCTGTTTT...TATAGAAGATAAGGGTGATGATGCATATAAGTTCACCCAGCAAAGCCGTAAAAT 41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 3 transcripts: ENSMUST00000033918.4 ENSMUST00000239106.2 ENSMUST00000239166.2 |
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| CDS-3UTR CAA 90 bp | ATTTTACGGCTTTGCTGGGTGAACTTATATGCATCATCACCCTTATCTTCTATACAAGTGAGGTATGTCTaGGTCAACATCTATGCCCCA | + |
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Preference number: 5 (lower is better) Translates to: ILRLCWVNLYASSPLSSIQVRYV*VNIYAP Trigger: TGGGGCATAGATGTTGACCAAGACATACCTCACTTG...TATAGAAGATAAGGGTGATGATGCATATAAGTTCACCCAGCAAAGCCGTAAAAT 41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000033918.4 ENSMUST00000239106.2 ENSMUST00000239166.2 |
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| CDS-3UTR CAA 90 bp | ATTTTACGGCTTTGCTGGGTGAACTTATATGCATCATCACCCTTATCTTCTATATCTTTTCATGAGCATTaGCTCAATGCCGTTCCCTTC | + |
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Preference number: 5 (lower is better) Translates to: ILRLCWVNLYASSPLSSISFHEH*LNAVPF Trigger: GAAGGGAACGGCATTGAGCAAATGCTCATGAAAAGA...TATAGAAGATAAGGGTGATGATGCATATAAGTTCACCCAGCAAAGCCGTAAAAT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000239166.2 |
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| CDS-3UTR CAA 90 bp | ATTTTACGGCTTTGCTGGGTGAACTTATATGCATCATCACCCTTATCTTCTATATGGGGTAGCTTCATGTaGAAGAAGTATTCTTTCTAC | + |
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Preference number: 5 (lower is better) Translates to: ILRLCWVNLYASSPLSSIWGSFM*KKYSFY Trigger: GTAGAAAGAATACTTCTTCAACATGAAGCTACCCCA...TATAGAAGATAAGGGTGATGATGCATATAAGTTCACCCAGCAAAGCCGTAAAAT 38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 4 transcripts: ENSMUST00000033918.4 ENSMUST00000239106.2 ENSMUST00000239152.2 ENSMUST00000239166.2 |
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| CDS-3UTR CAA 90 bp | ATTTTACGGCTTTGCTGGGTGAACTTATATGCATCATCACCCTTATCTTCTATAGATAAGATGGAACCTTaGTCTTCCTATGTAGTTTCG | + |
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Preference number: 5 (lower is better) Translates to: ILRLCWVNLYASSPLSSIDKMEP*SSYVVS Trigger: CGAAACTACATAGGAAGACAAAGGTTCCATCTTATC...TATAGAAGATAAGGGTGATGATGCATATAAGTTCACCCAGCAAAGCCGTAAAAT 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000033918.4 ENSMUST00000239106.2 ENSMUST00000239152.2 ENSMUST00000239166.2 |
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| CDS GCA 72 bp | GTTGAGCGGCAGCATGCAGTGGCGTGTCCCAGTACTTaGCTTTGTGCACATCAGCACCAGCATAAAGAAGCT | + |
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Preference number: 6 (lower is better) Translates to: VERQHAVACPST*LCAHQHQHKEA Trigger: AGCTTCTTTATGCTGGTGCTGATGTGCACAAAGGCAAGTACTGGGACACGCCACTGCATGCTGCCGCTCAAC 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000033918.4 ENSMUST00000239106.2 ENSMUST00000239152.2 ENSMUST00000239166.2 |
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| CDS TCA 72 bp | TCTAGCAGTAAGTTCACGATTTCGGTACTGGGTTGTTaGGCGGCAGCATGCAGTGGCGTGTCCCAGTACTTG | + |
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Preference number: 6 (lower is better) Translates to: SSSKFTISVLGC*AAACSGVSQYL Trigger: CAAGTACTGGGACACGCCACTGCATGCTGCCGCTCAACAACCCAGTACCGAAATCGTGAACTTACTGCTAGA 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000033918.4 ENSMUST00000239106.2 ENSMUST00000239152.2 ENSMUST00000239166.2 |
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| CDS GCA 72 bp | TGCGTTGAACAAGGGAGTCACGCCATCTATGGTGATTaGGTTTGCATTAGCCCCAGCTTCCAGGAGAGTCCT | + |
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Preference number: 6 (lower is better) Translates to: CVEQGSHAIYGD*VCISPSFQESP Trigger: AGGACTCTCCTGGAAGCTGGGGCTAATGCAAACGCAATCACCATAGATGGCGTGACTCCCTTGTTCAACGCA 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000033918.4 ENSMUST00000239106.2 ENSMUST00000239166.2 |
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| CDS CAA 72 bp | AGTTCTGCACAACTTGCGCTGCCTTGTGAGCATGCGTaGAACAAGGGAGTCACGCCATCTATGGTGATTGCG | + |
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Preference number: 6 (lower is better) Translates to: SSAQLALPCEHA*NKGVTPSMVIA Trigger: CGCAATCACCATAGATGGCGTGACTCCCTTGTTCAACGCATGCTCACAAGGCAGCGCAAGTTGTGCAGAACT 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000033918.4 ENSMUST00000239106.2 ENSMUST00000239166.2 |
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| CDS CAA 90 bp | GCAGCCTCATGTGTTGGAGATGGAAAACAGGACTCCAGTTGGGCTTaGGCACCATATTCCAAAAGGAGTTCTGCACAACTTGCGCTGCCT | + |
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Preference number: 6 (lower is better) Translates to: AASCVGDGKQDSSWA*APYSKRSSAQLALP Trigger: AGGCAGCGCAAGTTGTGCAGAACTCCTTTTGGAATATGGTGCCAAAGCCCAACTGGAGTCCTGTTTTCCATCTCCAACACATGAGGCTGC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000033918.4 ENSMUST00000239106.2 ENSMUST00000239166.2 |
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| CDS TCA 72 bp | TTCCAAAAGGAGTTCTGCACAACTTGCGCTGCCTTGTaGGCATGCGTTGAACAAGGGAGTCACGCCATCTAT | + |
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Preference number: 6 (lower is better) Translates to: FQKEFCTTCAAL*ACVEQGSHAIY Trigger: ATAGATGGCGTGACTCCCTTGTTCAACGCATGCTCACAAGGCAGCGCAAGTTGTGCAGAACTCCTTTTGGAA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000033918.4 ENSMUST00000239106.2 ENSMUST00000239166.2 |
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| CDS CCA 72 bp | ATGGTGACCTTTACTGGCAGCCTCATGTGTTGGAGATaGAAAACAGGACTCCAGTTGGGCTTTGGCACCATA | + |
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Preference number: 6 (lower is better) Translates to: MVTFTGSLMCWR*KTGLQLGFGTI Trigger: TATGGTGCCAAAGCCCAACTGGAGTCCTGTTTTCCATCTCCAACACATGAGGCTGCCAGTAAAGGTCACCAT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000033918.4 ENSMUST00000239106.2 ENSMUST00000239166.2 |
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| CDS CAA 90 bp | TCCAAAAGGAGTTCTGCACAACTTGCGCTGCCTTGTGAGCATGCGTaGAACAAGGGAGTCACGCCATCTATGGTGATTGCGTTTGCATTA | + |
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Preference number: 6 (lower is better) Translates to: SKRSSAQLALPCEHA*NKGVTPSMVIAFAL Trigger: TAATGCAAACGCAATCACCATAGATGGCGTGACTCCCTTGTTCAACGCATGCTCACAAGGCAGCGCAAGTTGTGCAGAACTCCTTTTGGA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000033918.4 ENSMUST00000239106.2 ENSMUST00000239166.2 |
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| CDS TCA 72 bp | CCACGTGGTCACCTAGGCAGGCCTCATGGAGTGGAGTaGCATGGTCTATGGTTACTGCATTTACATTATATC | + |
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Preference number: 6 (lower is better) Translates to: PRGHLGRPHGVE*HGLWLLHLHYI Trigger: GATATAATGTAAATGCAGTAACCATAGACCATGTCACTCCACTCCATGAGGCCTGCCTAGGTGACCACGTGG 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000033918.4 ENSMUST00000239106.2 ENSMUST00000239166.2 |
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| CDS CAA 72 bp | TCTTCCTATGTAGTTTCGGATGCAGAGTCGGCACAGTaGGCAAAGAGAGCTTGGGGTAGCTTCATGTTGAAG | + |
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Preference number: 6 (lower is better) Translates to: SSYVVSDAESAQ*AKRAWGSFMLK Trigger: CTTCAACATGAAGCTACCCCAAGCTCTCTTTGCCAACTGTGCCGACTCTGCATCCGAAACTACATAGGAAGA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000033918.4 ENSMUST00000239106.2 ENSMUST00000239152.2 ENSMUST00000239166.2 |
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| CDS CAA 90 bp | AAATGTCGAGACATTCATGGTGACCTTTACTGGCAGCCTCATGTGTaGGAGATGGAAAACAGGACTCCAGTTGGGCTTTGGCACCATATT | + |
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Preference number: 6 (lower is better) Translates to: KCRDIHGDLYWQPHV*EMENRTPVGLWHHI Trigger: AATATGGTGCCAAAGCCCAACTGGAGTCCTGTTTTCCATCTCCAACACATGAGGCTGCCAGTAAAGGTCACCATGAATGTCTCGACATTT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000033918.4 ENSMUST00000239106.2 ENSMUST00000239166.2 |
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| CDS CAA 90 bp | GCAGAGTCGGCACAGTTGGCAAAGAGAGCTTGGGGTAGCTTCATGTaGAAGAAGTATTCTTTCTACAGCACTGTTAGATGTAGCCAAGTC | + |
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Preference number: 6 (lower is better) Translates to: AESAQLAKRAWGSFM*KKYSFYSTVRCSQV Trigger: GACTTGGCTACATCTAACAGTGCTGTAGAAAGAATACTTCTTCAACATGAAGCTACCCCAAGCTCTCTTTGCCAACTGTGCCGACTCTGC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000033918.4 ENSMUST00000239106.2 ENSMUST00000239152.2 ENSMUST00000239166.2 |
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| CDS CCA 72 bp | TCGGATGCAGAGTCGGCACAGTTGGCAAAGAGAGCTTaGGGTAGCTTCATGTTGAAGAAGTATTCTTTCTAC | + |
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Preference number: 6 (lower is better) Translates to: SDAESAQLAKRA*GSFMLKKYSFY Trigger: GTAGAAAGAATACTTCTTCAACATGAAGCTACCCCAAGCTCTCTTTGCCAACTGTGCCGACTCTGCATCCGA 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000033918.4 ENSMUST00000239106.2 ENSMUST00000239152.2 ENSMUST00000239166.2 |
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| CDS CAA 90 bp | GAACCTTTGTCTTCCTATGTAGTTTCGGATGCAGAGTCGGCACAGTaGGCAAAGAGAGCTTGGGGTAGCTTCATGTTGAAGAAGTATTCT | + |
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Preference number: 6 (lower is better) Translates to: EPLSSYVVSDAESAQ*AKRAWGSFMLKKYS Trigger: AGAATACTTCTTCAACATGAAGCTACCCCAAGCTCTCTTTGCCAACTGTGCCGACTCTGCATCCGAAACTACATAGGAAGACAAAGGTTC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000033918.4 ENSMUST00000239106.2 ENSMUST00000239152.2 ENSMUST00000239166.2 |
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| CDS TCA 72 bp | AGTCGACAGGCCGCAAGAGATCTGTGTTCTTTGCATTaGTGTCTGCTCCAAATTCTAGCAGTAAGTTCACGA | + |
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Preference number: 6 (lower is better) Translates to: SRQAARDLCSLH*CLLQILAVSSR Trigger: TCGTGAACTTACTGCTAGAATTTGGAGCAGACATCAATGCAAAGAACACAGATCTCTTGCGGCCTGTCGACT 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000033918.4 ENSMUST00000239106.2 ENSMUST00000239152.2 ENSMUST00000239166.2 |
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| CDS GCA 72 bp | GAGTTCCCAAGTGAGGTATGTCTTGGTCAACATCTATaGCCCAGGCTATCAAAATGTCGAGACATTCATGGT | + |
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Preference number: 6 (lower is better) Translates to: EFPSEVCLGQHL*PRLSKCRDIHG Trigger: ACCATGAATGTCTCGACATTTTGATAGCCTGGGGCATAGATGTTGACCAAGACATACCTCACTTGGGAACTC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000033918.4 ENSMUST00000239106.2 ENSMUST00000239166.2 |
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| CDS CCA 72 bp | TGGTCACCTAGGCAGGCCTCATGGAGTGGAGTGACATaGTCTATGGTTACTGCATTTACATTATATCCTTGT | + |
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Preference number: 6 (lower is better) Translates to: WSPRQASWSGVT*SMVTAFTLYPC Trigger: ACAAGGATATAATGTAAATGCAGTAACCATAGACCATGTCACTCCACTCCATGAGGCCTGCCTAGGTGACCA 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000033918.4 ENSMUST00000239106.2 ENSMUST00000239166.2 |
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| CDS CAA 72 bp | TGTGTTGGAGATGGAAAACAGGACTCCAGTTGGGCTTaGGCACCATATTCCAAAAGGAGTTCTGCACAACTT | + |
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Preference number: 6 (lower is better) Translates to: CVGDGKQDSSWA*APYSKRSSAQL Trigger: AAGTTGTGCAGAACTCCTTTTGGAATATGGTGCCAAAGCCCAACTGGAGTCCTGTTTTCCATCTCCAACACA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000033918.4 ENSMUST00000239106.2 ENSMUST00000239166.2 |
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| CDS CCA 72 bp | CTATCAAAATGTCGAGACATTCATGGTGACCTTTACTaGCAGCCTCATGTGTTGGAGATGGAAAACAGGACT | + |
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Preference number: 6 (lower is better) Translates to: LSKCRDIHGDLY*QPHVLEMENRT Trigger: AGTCCTGTTTTCCATCTCCAACACATGAGGCTGCCAGTAAAGGTCACCATGAATGTCTCGACATTTTGATAG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000033918.4 ENSMUST00000239106.2 ENSMUST00000239166.2 |
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| CDS CAA 72 bp | AGCTACATAAAGAGGAGTTCCCAAGTGAGGTATGTCTaGGTCAACATCTATGCCCCAGGCTATCAAAATGTC | + |
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Preference number: 6 (lower is better) Translates to: SYIKRSSQVRYV*VNIYAPGYQNV Trigger: GACATTTTGATAGCCTGGGGCATAGATGTTGACCAAGACATACCTCACTTGGGAACTCCTCTTTATGTAGCT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000033918.4 ENSMUST00000239106.2 ENSMUST00000239166.2 |
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| CDS TCA 72 bp | AGCATAAAGAAGCTTCCAGATGCAATGGAACTGCTGTaGCATACAAGCTACATAAAGAGGAGTTCCCAAGTG | + |
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Preference number: 6 (lower is better) Translates to: SIKKLPDAMELL*HTSYIKRSSQV Trigger: CACTTGGGAACTCCTCTTTATGTAGCTTGTATGTCACAGCAGTTCCATTGCATCTGGAAGCTTCTTTATGCT 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000033918.4 ENSMUST00000239106.2 ENSMUST00000239166.2 |
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| CDS GCA 72 bp | TGTGCACATCAGCACCAGCATAAAGAAGCTTCCAGATaGAATGGAACTGCTGTGACATACAAGCTACATAAA | + |
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Preference number: 6 (lower is better) Translates to: CAHQHQHKEASR*NGTAVTYKLHK Trigger: TTTATGTAGCTTGTATGTCACAGCAGTTCCATTGCATCTGGAAGCTTCTTTATGCTGGTGCTGATGTGCACA 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000033918.4 ENSMUST00000239106.2 ENSMUST00000239166.2 |
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| CDS GCA 72 bp | TCCTCTACATTTGCTAGCTTTCTTTTCATGAGCATTTaGTCAATGCCGTTCCCTTCAACAGCAATGTCTGCA | + |
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Preference number: 6 (lower is better) Translates to: SSTFASFLFMSI*SMPFPSTAMSA Trigger: TGCAGACATTGCTGTTGAAGGGAACGGCATTGAGCAAATGCTCATGAAAAGAAAGCTAGCAAATGTAGAGGA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000239166.2 |
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| CDS CAA 72 bp | GCACAGTTGGCAAAGAGAGCTTGGGGTAGCTTCATGTaGAAGAAGTATTCTTTCTACAGCACTGTTAGATGT | + |
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Preference number: 6 (lower is better) Translates to: AQLAKRAWGSFM*KKYSFYSTVRC Trigger: ACATCTAACAGTGCTGTAGAAAGAATACTTCTTCAACATGAAGCTACCCCAAGCTCTCTTTGCCAACTGTGC 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000033918.4 ENSMUST00000239106.2 ENSMUST00000239152.2 ENSMUST00000239166.2 |
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| CDS TCA 72 bp | CACAGTTGGCAAAGAGAGCTTGGGGTAGCTTCATGTTaGAGAAGTATTCTTTCTACAGCACTGTTAGATGTA | + |
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Preference number: 6 (lower is better) Translates to: HSWQRELGVASC*RSILSTALLDV Trigger: TACATCTAACAGTGCTGTAGAAAGAATACTTCTTCAACATGAAGCTACCCCAAGCTCTCTTTGCCAACTGTG 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000033918.4 ENSMUST00000239106.2 ENSMUST00000239152.2 ENSMUST00000239166.2 |
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| CDS TCA 72 bp | AAGAGCATTCCTCTACATTTGCTAGCTTTCTTTTCATaGGCATTTGCTCAATGCCGTTCCCTTCAACAGCAA | + |
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Preference number: 6 (lower is better) Translates to: KSIPLHLLAFFS*AFAQCRSLQQQ Trigger: TTGCTGTTGAAGGGAACGGCATTGAGCAAATGCTCATGAAAAGAAAGCTAGCAAATGTAGAGGAATGCTCTT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000239166.2 |
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