RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for ASB18 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000067081

Ensembl transcript IDs: ENSMUST00000086882.8, ENSMUST00000097656.10, ENSMUST00000151330.2, ENSMUST00000154228.8, ENSMUST00000238685.2

Found 246 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR GCA 90 bp ACGCTCTCCTTGCCGAAGAGTTTTCGGATAGTACAGCGGCAAAGGTaGTGCAGGCAGCGCGGGGTGTGTGCCAAGGCGAAGAGAGACCTG +
Preference number: 1 (lower is better)
Translates to: TLSLPKSFRIVQRQR*CRQRGVCAKAKRDL
Trigger: CAGGTCTCTCTTCGCCTTGGCACACACCCCGCGCTGCCTGCAGCACCTTTGCCGCTGTACTATCCGAAAACTCTTCGGCAAGGAGAGCGT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000151330.2
ENSMUST00000154228.8
3UTR CCA 90 bp CTGAGCAGGGGGTCTGCTATGCTCTGGGTACAGTTTCTCTCCAAGTaGCTTGGCTCCAGGAGGGATGGGAGCCTCTCCTGTAAGTCCAAG +
Preference number: 1 (lower is better)
Translates to: LSRGSAMLWVQFLSK*LGSRRDGSLSCKSK
Trigger: CTTGGACTTACAGGAGAGGCTCCCATCCCTCCTGGAGCCAAGCCACTTGGAGAGAAACTGTACCCAGAGCATAGCAGACCCCCTGCTCAG
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000086882.8
ENSMUST00000238685.2
3UTR TCA 90 bp GGTCGGATGGGATGGGCAAGGAAGGACAAACAGGCCTTGGGTCTATaGCTGGCCATAGCTGCTTCTGTCTCCTGGGTGGGGCGTTTTGTT +
Preference number: 1 (lower is better)
Translates to: GRMGWARKDKQALGL*LAIAASVSWVGRFV
Trigger: AACAAAACGCCCCACCCAGGAGACAGAAGCAGCTATGGCCAGTCATAGACCCAAGGCCTGTTTGTCCTTCCTTGCCCATCCCATCCGACC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000086882.8
ENSMUST00000238685.2
3UTR GCA 90 bp AAGGTATATCTGACCCTGGAGTGGGTGTCCTCTGAGCAGGGGGTCTaGTATGCTCTGGGTACAGTTTCTCTCCAAGTGGCTTGGCTCCAG +
Preference number: 1 (lower is better)
Translates to: KVYLTLEWVSSEQGV*YALGTVSLQVAWLQ
Trigger: CTGGAGCCAAGCCACTTGGAGAGAAACTGTACCCAGAGCATAGCAGACCCCCTGCTCAGAGGACACCCACTCCAGGGTCAGATATACCTT
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000086882.8
ENSMUST00000238685.2
3UTR GCA 90 bp AGCCCTGGCACTGGAGTTATGAATGATTGTGCACAACCAGGTAAGTaGTGGGATTCAATCCCAGGTCCTCTGCAAGAGCAGCCAGTGCTC +
Preference number: 1 (lower is better)
Translates to: SPGTGVMNDCAQPGK*WDSIPGPLQEQPVL
Trigger: GAGCACTGGCTGCTCTTGCAGAGGACCTGGGATTGAATCCCAGCACTTACCTGGTTGTGCACAATCATTCATAACTCCAGTGCCAGGGCT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000086882.8
ENSMUST00000238685.2
3UTR CCA 90 bp CTGGTATACTTCTTCAGGGATGGCTTCCCGCCAGGACTCAGACACTaGGAGCTGAGTGTAGGAGTTGAACAGAACTTCAATGACTTCAGG +
Preference number: 1 (lower is better)
Translates to: LVYFFRDGFPPGLRH*ELSVGVEQNFNDFR
Trigger: CCTGAAGTCATTGAAGTTCTGTTCAACTCCTACACTCAGCTCCCAGTGTCTGAGTCCTGGCGGGAAGCCATCCCTGAAGAAGTATACCAG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000151330.2
ENSMUST00000154228.8
3UTR CCA 90 bp AAGGTGGTCATGAAGAGTTCTTGCTTTCAAATTCAGGCTACTGGATaGCTCCCTGGTAGAGCCTTTACCAAAGGCATAAGAGGCCCTGAG +
Preference number: 1 (lower is better)
Translates to: KVVMKSSCFQIQATG*LPGRAFTKGIRGPE
Trigger: CTCAGGGCCTCTTATGCCTTTGGTAAAGGCTCTACCAGGGAGCCATCCAGTAGCCTGAATTTGAAAGCAAGAACTCTTCATGACCACCTT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000086882.8
ENSMUST00000238685.2
3UTR GCA 90 bp GGATTCAATCCCAGGTCCTCTGCAAGAGCAGCCAGTGCTCTTCATTaGTGGACAGCTATAATAACAGTTACCAATTCCATGTCAAGGTGC +
Preference number: 1 (lower is better)
Translates to: GFNPRSSARAASALH*WTAIITVTNSMSRC
Trigger: GCACCTTGACATGGAATTGGTAACTGTTATTATAGCTGTCCAGCAATGAAGAGCACTGGCTGCTCTTGCAGAGGACCTGGGATTGAATCC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000086882.8
ENSMUST00000238685.2
3UTR TCA 90 bp TACCCGGCTTTTGCCAATATTTACCAGAGTGGGACTAGCAAGGGTTaGAAGATGGTTTCAAGCAGAAGACATCTAAGTGACCAAGGTCGG +
Preference number: 1 (lower is better)
Translates to: YPAFANIYQSGTSKG*KMVSSRRHLSDQGR
Trigger: CCGACCTTGGTCACTTAGATGTCTTCTGCTTGAAACCATCTTTCAACCCTTGCTAGTCCCACTCTGGTAAATATTGGCAAAAGCCGGGTA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000086882.8
ENSMUST00000238685.2
3UTR TCA 90 bp TTAGAAAGAAAGGGGGCCACTCTGCTTATCTCTAGAAGGTGGTCATaGAGAGTTCTTGCTTTCAAATTCAGGCTACTGGATGGCTCCCTG +
Preference number: 1 (lower is better)
Translates to: LERKGATLLISRRWS*RVLAFKFRLLDGSL
Trigger: CAGGGAGCCATCCAGTAGCCTGAATTTGAAAGCAAGAACTCTTCATGACCACCTTCTAGAGATAAGCAGAGTGGCCCCCTTTCTTTCTAA
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000086882.8
ENSMUST00000238685.2
3UTR GCA 90 bp GTAAGTGCTGGGATTCAATCCCAGGTCCTCTGCAAGAGCAGCCAGTaGTCTTCATTGCTGGACAGCTATAATAACAGTTACCAATTCCAT +
Preference number: 1 (lower is better)
Translates to: VSAGIQSQVLCKSSQ*SSLLDSYNNSYQFH
Trigger: ATGGAATTGGTAACTGTTATTATAGCTGTCCAGCAATGAAGAGCACTGGCTGCTCTTGCAGAGGACCTGGGATTGAATCCCAGCACTTAC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000086882.8
ENSMUST00000238685.2
3UTR CCA 90 bp TTCAATCCCAGGTCCTCTGCAAGAGCAGCCAGTGCTCTTCATTGCTaGACAGCTATAATAACAGTTACCAATTCCATGTCAAGGTGCACT +
Preference number: 1 (lower is better)
Translates to: FNPRSSARAASALHC*TAIITVTNSMSRCT
Trigger: AGTGCACCTTGACATGGAATTGGTAACTGTTATTATAGCTGTCCAGCAATGAAGAGCACTGGCTGCTCTTGCAGAGGACCTGGGATTGAA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000086882.8
ENSMUST00000238685.2
3UTR GCA 90 bp TTTACCTTATTTCACGAATGTTTTGCCTGCATGCATATATGTATATaGAGTGCCCATAGAGGTCCCTGGAAGCCCTGGCACTGGAGTTAT +
Preference number: 1 (lower is better)
Translates to: FTLFHECFACMHICI*SAHRGPWKPWHWSY
Trigger: ATAACTCCAGTGCCAGGGCTTCCAGGGACCTCTATGGGCACTGCATATACATATATGCATGCAGGCAAAACATTCGTGAAATAAGGTAAA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000086882.8
ENSMUST00000238685.2
3UTR TCA 90 bp ACTCCATACATTGTAGCAGCAATAGGAATGTCTGCCCATCCACTGTaGGGTTCACTTCAGACCATCTATCTCATCCTAGCTGTAATTAGA +
Preference number: 1 (lower is better)
Translates to: TPYIVAAIGMSAHPL*GSLQTIYLILAVIR
Trigger: TCTAATTACAGCTAGGATGAGATAGATGGTCTGAAGTGAACCTCACAGTGGATGGGCAGACATTCCTATTGCTGCTACAATGTATGGAGT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000086882.8
ENSMUST00000238685.2
3UTR TCA 90 bp TGGACAGCTATAATAACAGTTACCAATTCCATGTCAAGGTGCACTTaGAGCTGTATGTCTGTGTTTTTCCTGGTTACTTGGGAGACAGAA +
Preference number: 1 (lower is better)
Translates to: WTAIITVTNSMSRCT*SCMSVFFLVTWETE
Trigger: TTCTGTCTCCCAAGTAACCAGGAAAAACACAGACATACAGCTTCAAGTGCACCTTGACATGGAATTGGTAACTGTTATTATAGCTGTCCA
41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000086882.8
ENSMUST00000238685.2
3UTR CAA 90 bp AGCCATGGGAGGGGCTGTCCCTTAGGGCCAGCAAGGCTCCCTGTGTaGAAGCAGCAGAACCAAGATGTAAGGATTAAGGGAGCGCAGGCC +
Preference number: 2 (lower is better)
Translates to: SHGRGCPLGPARLPV*KQQNQDVRIKGAQA
Trigger: GGCCTGCGCTCCCTTAATCCTTACATCTTGGTTCTGCTGCTTCAACACAGGGAGCCTTGCTGGCCCTAAGGGACAGCCCCTCCCATGGCT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000086882.8
ENSMUST00000238685.2
3UTR CAA 90 bp GCAGGGGGTCTGCTATGCTCTGGGTACAGTTTCTCTCCAAGTGGCTaGGCTCCAGGAGGGATGGGAGCCTCTCCTGTAAGTCCAAGAGTC +
Preference number: 2 (lower is better)
Translates to: AGGLLCSGYSFSPSG*APGGMGASPVSPRV
Trigger: GACTCTTGGACTTACAGGAGAGGCTCCCATCCCTCCTGGAGCCAAGCCACTTGGAGAGAAACTGTACCCAGAGCATAGCAGACCCCCTGC
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000086882.8
ENSMUST00000238685.2
3UTR-3UTR CCA 90 bp GCCGAAGAGTTTTCGGATAGTACAGCGGCAAAGGTGCTGCAGGCAGCGCGGGGTATGTCCTCAGAACCTTaGGGAAGGCATCAGGCCACA +
Preference number: 2 (lower is better)
Translates to: AEEFSDSTAAKVLQAARGMSSEP*GRHQAT
Trigger: TGTGGCCTGATGCCTTCCCCAAGGTTCTGAGGACAT...ACCCCGCGCTGCCTGCAGCACCTTTGCCGCTGTACTATCCGAAAACTCTTCGGC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000151330.2
3UTR-3UTR TCA 90 bp TATCTCCTTTGTGATGGCCAGCCTCAACAGGTGGACTCTACTTGGTCCCTGTTCTCCTCCGGTGTCCTGTaGGTGCTGGGCTCTCCTGTG +
Preference number: 2 (lower is better)
Translates to: YLLCDGQPQQVDSTWSLFSSGVL*VLGSPV
Trigger: CACAGGAGAGCCCAGCACTCACAGGACACCGGAGGA...GAACAGGGACCAAGTAGAGTCCACCTGTTGAGGCTGGCCATCACAAAGGAGATA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000086882.8
ENSMUST00000238685.2
3UTR-3UTR CCA 90 bp CCTGCATGGGATATGAGTCGTCCCCAGAGCTCTGGCTTTCCCCGAATAAAGCCTTCTCTCCAAGTGGCTTaGCTCCAGGAGGGATGGGAG +
Preference number: 2 (lower is better)
Translates to: PAWDMSRPQSSGFPRIKPSLQVA*LQEGWE
Trigger: CTCCCATCCCTCCTGGAGCCAAGCCACTTGGAGAGA...AGGCTTTATTCGGGGAAAGCCAGAGCTCTGGGGACGACTCATATCCCATGCAGG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000086882.8
ENSMUST00000238685.2
3UTR-3UTR TCA 90 bp CAGCCTCAACAGGTGGACTCTACTTGGTCCCTGTTCTTATTTTCATTGTGGGCGGGAGTGGGTGTCCTCTaGGCAGGGGGTCTGCTATGC +
Preference number: 2 (lower is better)
Translates to: QPQQVDSTWSLFLFSLWAGVGVL*AGGLLC
Trigger: GCATAGCAGACCCCCTGCTCAGAGGACACCCACTCC...CGCCCACAATGAAAATAAGAACAGGGACCAAGTAGAGTCCACCTGTTGAGGCTG
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000086882.8
ENSMUST00000238685.2
3UTR-3UTR TCA 90 bp CAGCCTCAACAGGTGGACTCTACTTGGTCCCTGTTCTTATTTTCATTGTGGGCGTATTGTCCTGACGCCTaGGGGAGGGGCTCCTCTCGG +
Preference number: 2 (lower is better)
Translates to: QPQQVDSTWSLFLFSLWAYCPDA*GRGSSR
Trigger: CCGAGAGGAGCCCCTCCCTCAGGCGTCAGGACAATA...CGCCCACAATGAAAATAAGAACAGGGACCAAGTAGAGTCCACCTGTTGAGGCTG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000086882.8
ENSMUST00000238685.2
3UTR-3UTR TCA 90 bp GTCAGGTCGGATGGGATGGGCAAGGAAGGACAAACAGGCCTTGGGTCTATGACTTGTTTGGCCTTAGGGTaGCTAGTTTGCACAGGGCAG +
Preference number: 2 (lower is better)
Translates to: VRSDGMGKEGQTGLGSMTCLALG*LVCTGQ
Trigger: CTGCCCTGTGCAAACTAGTCACCCTAAGGCCAAACA...AGTCATAGACCCAAGGCCTGTTTGTCCTTCCTTGCCCATCCCATCCGACCTGAC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000086882.8
ENSMUST00000238685.2
3UTR-3UTR GCA 90 bp AAAGCAGGTAATTTTGCAGAGTCTCAGGTAATGGTAGCTGGGGCACAAGGTGAACAGCGGCAAAGGTGCTaGAGGCAGCGCGGGGTGTGT +
Preference number: 2 (lower is better)
Translates to: KAGNFAESQVMVAGAQGEQRQRC*RQRGVC
Trigger: ACACACCCCGCGCTGCCTGCAGCACCTTTGCCGCTG...TTCACCTTGTGCCCCAGCTACCATTACCTGAGACTCTGCAAAATTACCTGCTTT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000151330.2
ENSMUST00000154228.8
3UTR-3UTR GCA 90 bp AAAGCAGGTAATTTTGCAGAGTCTCAGGTAATGGTAGCTGGGGCACAAGGTGAAGTACAGCGGCAAAGGTaGTGCAGGCAGCGCGGGGTG +
Preference number: 2 (lower is better)
Translates to: KAGNFAESQVMVAGAQGEVQRQR*CRQRGV
Trigger: CACCCCGCGCTGCCTGCAGCACCTTTGCCGCTGTAC...TTCACCTTGTGCCCCAGCTACCATTACCTGAGACTCTGCAAAATTACCTGCTTT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000151330.2
ENSMUST00000154228.8
3UTR-3UTR CCA 90 bp CCTGCATGGGATATGAGTCGTCCCCAGAGCTCTGGCTTTCCCCGAATAAAGCCTCAGTTTCTCTCCAAGTaGCTTGGCTCCAGGAGGGAT +
Preference number: 2 (lower is better)
Translates to: PAWDMSRPQSSGFPRIKPQFLSK*LGSRRD
Trigger: ATCCCTCCTGGAGCCAAGCCACTTGGAGAGAAACTG...AGGCTTTATTCGGGGAAAGCCAGAGCTCTGGGGACGACTCATATCCCATGCAGG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000086882.8
ENSMUST00000238685.2
3UTR-3UTR TCA 90 bp CCTGCATGGGATATGAGTCGTCCCCAGAGCTCTGGCTTTCCCCGAATAAAGCCTCAGGCCTTGATGTTCTaGCATCTCTTGCTGTGTGGT +
Preference number: 2 (lower is better)
Translates to: PAWDMSRPQSSGFPRIKPQALMF*HLLLCG
Trigger: ACCACACAGCAAGAGATGTCAGAACATCAAGGCCTG...AGGCTTTATTCGGGGAAAGCCAGAGCTCTGGGGACGACTCATATCCCATGCAGG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000086882.8
ENSMUST00000238685.2
3UTR-3UTR GCA 90 bp TATCTCCTTTGTGATGGCCAGCCTCAACAGGTGGACTCTACTTGGTCCCTGTTCGGGCTCTCCTGTGTTTaGAAGCACAATGGGCCCCTT +
Preference number: 2 (lower is better)
Translates to: YLLCDGQPQQVDSTWSLFGLSCV*KHNGPL
Trigger: AAGGGGCCCATTGTGCTTGCAAACACAGGAGAGCCC...GAACAGGGACCAAGTAGAGTCCACCTGTTGAGGCTGGCCATCACAAAGGAGATA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000086882.8
ENSMUST00000238685.2
3UTR-3UTR TCA 90 bp TATCTCCTTTGTGATGGCCAGCCTCAACAGGTGGACTCTACTTGGTCCCTGTTCTGTTTGGCCTTAGGGTaGCTAGTTTGCACAGGGCAG +
Preference number: 2 (lower is better)
Translates to: YLLCDGQPQQVDSTWSLFCLALG*LVCTGQ
Trigger: CTGCCCTGTGCAAACTAGTCACCCTAAGGCCAAACA...GAACAGGGACCAAGTAGAGTCCACCTGTTGAGGCTGGCCATCACAAAGGAGATA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000086882.8
ENSMUST00000238685.2
3UTR-3UTR GCA 90 bp GAGAGTCTAACAAAGGAGGTGGCCCTGTTTGGCCTTAGGGTGACTAGTTTGCACTGCAAGAGCAGCCAGTaGTCTTCATTGCTGGACAGC +
Preference number: 2 (lower is better)
Translates to: ESLTKEVALFGLRVTSLHCKSSQ*SSLLDS
Trigger: GCTGTCCAGCAATGAAGAGCACTGGCTGCTCTTGCA...GTGCAAACTAGTCACCCTAAGGCCAAACAGGGCCACCTCCTTTGTTAGACTCTC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000086882.8
ENSMUST00000238685.2
3UTR-3UTR GCA 90 bp CAGCCTCAACAGGTGGACTCTACTTGGTCCCTGTTCTTATTTTCATTGTGGGCGCAATCCCAGGTCCTCTaGAAGAGCAGCCAGTGCTCT +
Preference number: 2 (lower is better)
Translates to: QPQQVDSTWSLFLFSLWAQSQVL*KSSQCS
Trigger: AGAGCACTGGCTGCTCTTGCAGAGGACCTGGGATTG...CGCCCACAATGAAAATAAGAACAGGGACCAAGTAGAGTCCACCTGTTGAGGCTG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000086882.8
ENSMUST00000238685.2
3UTR-3UTR TCA 90 bp GTCAGGTCGGATGGGATGGGCAAGGAAGGACAAACAGGCCTTGGGTCTATGACTGCATGGTTATCAGAGTaGCATTTTCTCTCTAGGGAC +
Preference number: 2 (lower is better)
Translates to: VRSDGMGKEGQTGLGSMTAWLSE*HFLSRD
Trigger: GTCCCTAGAGAGAAAATGTCACTCTGATAACCATGC...AGTCATAGACCCAAGGCCTGTTTGTCCTTCCTTGCCCATCCCATCCGACCTGAC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000086882.8
ENSMUST00000238685.2
3UTR-3UTR TCA 90 bp CCTGCATGGGATATGAGTCGTCCCCAGAGCTCTGGCTTTCCCCGAATAAAGCCTGCATGGTTATCAGAGTaGCATTTTCTCTCTAGGGAC +
Preference number: 2 (lower is better)
Translates to: PAWDMSRPQSSGFPRIKPAWLSE*HFLSRD
Trigger: GTCCCTAGAGAGAAAATGTCACTCTGATAACCATGC...AGGCTTTATTCGGGGAAAGCCAGAGCTCTGGGGACGACTCATATCCCATGCAGG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000086882.8
ENSMUST00000238685.2
3UTR-3UTR GCA 90 bp CAGCCTCAACAGGTGGACTCTACTTGGTCCCTGTTCTTATTTTCATTGTGGGCGTGCAAGAGCAGCCAGTaGTCTTCATTGCTGGACAGC +
Preference number: 2 (lower is better)
Translates to: QPQQVDSTWSLFLFSLWACKSSQ*SSLLDS
Trigger: GCTGTCCAGCAATGAAGAGCACTGGCTGCTCTTGCA...CGCCCACAATGAAAATAAGAACAGGGACCAAGTAGAGTCCACCTGTTGAGGCTG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000086882.8
ENSMUST00000238685.2
3UTR-3UTR CCA 90 bp CTGGGATTCAATCCCAGGTCCTCTGCAAGAGCAGCCAGTGCTCTTCATTGCTGGTTTTTCCTGGTTACTTaGGAGACAGAAGGGGGTAGA +
Preference number: 2 (lower is better)
Translates to: LGFNPRSSARAASALHCWFFLVT*ETEGGR
Trigger: TCTACCCCCTTCTGTCTCCCAAGTAACCAGGAAAAA...CCAGCAATGAAGAGCACTGGCTGCTCTTGCAGAGGACCTGGGATTGAATCCCAG
51% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000086882.8
ENSMUST00000238685.2
3UTR-3UTR CCA 90 bp TATCTCCTTTGTGATGGCCAGCCTCAACAGGTGGACTCTACTTGGTCCCTGTTCTTAGGTGTCTGGCCATaGAGAGGTTTAGGCAGAGCA +
Preference number: 2 (lower is better)
Translates to: YLLCDGQPQQVDSTWSLFLGVWP*RGLGRA
Trigger: TGCTCTGCCTAAACCTCTCCATGGCCAGACACCTAA...GAACAGGGACCAAGTAGAGTCCACCTGTTGAGGCTGGCCATCACAAAGGAGATA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000086882.8
ENSMUST00000238685.2
3UTR-3UTR CCA 90 bp CAGCCTCAACAGGTGGACTCTACTTGGTCCCTGTTCTTATTTTCATTGTGGGCGTCAGGTCGGATGGGATaGGCAAGGAAGGACAAACAG +
Preference number: 2 (lower is better)
Translates to: QPQQVDSTWSLFLFSLWASGRMG*ARKDKQ
Trigger: CTGTTTGTCCTTCCTTGCCCATCCCATCCGACCTGA...CGCCCACAATGAAAATAAGAACAGGGACCAAGTAGAGTCCACCTGTTGAGGCTG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000086882.8
ENSMUST00000238685.2
3UTR-3UTR TCA 90 bp CCTGCATGGGATATGAGTCGTCCCCAGAGCTCTGGCTTTCCCCGAATAAAGCCTATGTCAAGGTGCACTTaGAGCTGTATGTCTGTGTTT +
Preference number: 2 (lower is better)
Translates to: PAWDMSRPQSSGFPRIKPMSRCT*SCMSVF
Trigger: AAACACAGACATACAGCTTCAAGTGCACCTTGACAT...AGGCTTTATTCGGGGAAAGCCAGAGCTCTGGGGACGACTCATATCCCATGCAGG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000086882.8
ENSMUST00000238685.2
3UTR-3UTR TCA 90 bp TATCTCCTTTGTGATGGCCAGCCTCAACAGGTGGACTCTACTTGGTCCCTGTTCCTGGCACTGGAGTTATaGATGATTGTGCACAACCAG +
Preference number: 2 (lower is better)
Translates to: YLLCDGQPQQVDSTWSLFLALEL*MIVHNQ
Trigger: CTGGTTGTGCACAATCATTCATAACTCCAGTGCCAG...GAACAGGGACCAAGTAGAGTCCACCTGTTGAGGCTGGCCATCACAAAGGAGATA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000086882.8
ENSMUST00000238685.2
3UTR-3UTR GCA 90 bp CAGCCTCAACAGGTGGACTCTACTTGGTCCCTGTTCTTATTTTCATTGTGGGCGGCACAACCAGGTAAGTaGTGGGATTCAATCCCAGGT +
Preference number: 2 (lower is better)
Translates to: QPQQVDSTWSLFLFSLWAAQPGK*WDSIPG
Trigger: ACCTGGGATTGAATCCCAGCACTTACCTGGTTGTGC...CGCCCACAATGAAAATAAGAACAGGGACCAAGTAGAGTCCACCTGTTGAGGCTG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000086882.8
ENSMUST00000238685.2
3UTR-3UTR GCA 90 bp CCTGCATGGGATATGAGTCGTCCCCAGAGCTCTGGCTTTCCCCGAATAAAGCCTATGCATATATGTATATaGAGTGCCCATAGAGGTCCC +
Preference number: 2 (lower is better)
Translates to: PAWDMSRPQSSGFPRIKPMHICI*SAHRGP
Trigger: GGGACCTCTATGGGCACTGCATATACATATATGCAT...AGGCTTTATTCGGGGAAAGCCAGAGCTCTGGGGACGACTCATATCCCATGCAGG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000086882.8
ENSMUST00000238685.2
3UTR-3UTR CCA 90 bp GTCAGGTCGGATGGGATGGGCAAGGAAGGACAAACAGGCCTTGGGTCTATGACTGCAAGGGTTGAAAGATaGTTTCAAGCAGAAGACATC +
Preference number: 2 (lower is better)
Translates to: VRSDGMGKEGQTGLGSMTARVER*FQAEDI
Trigger: GATGTCTTCTGCTTGAAACCATCTTTCAACCCTTGC...AGTCATAGACCCAAGGCCTGTTTGTCCTTCCTTGCCCATCCCATCCGACCTGAC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000086882.8
ENSMUST00000238685.2
3UTR-3UTR CCA 90 bp CAGCCTCAACAGGTGGACTCTACTTGGTCCCTGTTCTTATTTTCATTGTGGGCGAGGGCCTATAAAAACTaGGACCTCTTTCCCCTCGAG +
Preference number: 2 (lower is better)
Translates to: QPQQVDSTWSLFLFSLWARAYKN*DLFPLE
Trigger: CTCGAGGGGAAAGAGGTCCCAGTTTTTATAGGCCCT...CGCCCACAATGAAAATAAGAACAGGGACCAAGTAGAGTCCACCTGTTGAGGCTG
50% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000086882.8
ENSMUST00000238685.2
3UTR-3UTR TCA 90 bp GAAAGGGGGCCACTCTGCTTATCTCTAGAAGGTGGTCATGAAGAGTTCTTGCTTCAGAAGACATCTAAGTaGCCAAGGTCGGGCTTACCA +
Preference number: 2 (lower is better)
Translates to: ERGPLCLSLEGGHEEFLLQKTSK*PRSGLP
Trigger: TGGTAAGCCCGACCTTGGTCACTTAGATGTCTTCTG...AAGCAAGAACTCTTCATGACCACCTTCTAGAGATAAGCAGAGTGGCCCCCTTTC
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000086882.8
ENSMUST00000238685.2
3UTR-3UTR TCA 90 bp GAAAGGGGGCCACTCTGCTTATCTCTAGAAGGTGGTCATGAAGAGTTCTTGCTTCAGGCCTTGATGTTCTaGCATCTCTTGCTGTGTGGT +
Preference number: 2 (lower is better)
Translates to: ERGPLCLSLEGGHEEFLLQALMF*HLLLCG
Trigger: ACCACACAGCAAGAGATGTCAGAACATCAAGGCCTG...AAGCAAGAACTCTTCATGACCACCTTCTAGAGATAAGCAGAGTGGCCCCCTTTC
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000086882.8
ENSMUST00000238685.2
3UTR-3UTR TCA 90 bp TATCTCCTTTGTGATGGCCAGCCTCAACAGGTGGACTCTACTTGGTCCCTGTTCGGCACTGAAAGATCCTaGCAGAATGTAAAAGGACAC +
Preference number: 2 (lower is better)
Translates to: YLLCDGQPQQVDSTWSLFGTERS*QNVKGH
Trigger: GTGTCCTTTTACATTCTGTCAGGATCTTTCAGTGCC...GAACAGGGACCAAGTAGAGTCCACCTGTTGAGGCTGGCCATCACAAAGGAGATA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000086882.8
ENSMUST00000238685.2
3UTR-3UTR GCA 90 bp ATAACAAAGGGCAGGATGAGGTCAGATCACCCAAAGGAGCTGAAAGATGTTGTTGCAGAAAGGGGAAGATaGAGAGAAGAACCTGGGCCC +
Preference number: 2 (lower is better)
Translates to: ITKGRMRSDHPKELKDVVAERGR*REEPGP
Trigger: GGGCCCAGGTTCTTCTCTGCATCTTCCCCTTTCTGC...AACAACATCTTTCAGCTCCTTTGGGTGATCTGACCTCATCCTGCCCTTTGTTAT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000086882.8
ENSMUST00000238685.2
3UTR CAA 90 bp GGGATTCAATCCCAGGTCCTCTGCAAGAGCAGCCAGTGCTCTTCATaGCTGGACAGCTATAATAACAGTTACCAATTCCATGTCAAGGTG +
Preference number: 2 (lower is better)
Translates to: GIQSQVLCKSSQCSS*LDSYNNSYQFHVKV
Trigger: CACCTTGACATGGAATTGGTAACTGTTATTATAGCTGTCCAGCAATGAAGAGCACTGGCTGCTCTTGCAGAGGACCTGGGATTGAATCCC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000086882.8
ENSMUST00000238685.2
3UTR-3UTR TCA 90 bp GAGAGTCTAACAAAGGAGGTGGCCCTGTTTGGCCTTAGGGTGACTAGTTTGCACATGTCAAGGTGCACTTaGAGCTGTATGTCTGTGTTT +
Preference number: 2 (lower is better)
Translates to: ESLTKEVALFGLRVTSLHMSRCT*SCMSVF
Trigger: AAACACAGACATACAGCTTCAAGTGCACCTTGACAT...GTGCAAACTAGTCACCCTAAGGCCAAACAGGGCCACCTCCTTTGTTAGACTCTC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000086882.8
ENSMUST00000238685.2
3UTR-3UTR CCA 90 bp TACCATCCTCCGGTGTCCTGTGAGTGCTGGGCTCTCCTGTGTTTGCAAGCACAAAGTGCTCTTCATTGCTaGACAGCTATAATAACAGTT +
Preference number: 2 (lower is better)
Translates to: YHPPVSCECWALLCLQAQSALHC*TAIITV
Trigger: AACTGTTATTATAGCTGTCCAGCAATGAAGAGCACT...TTGTGCTTGCAAACACAGGAGAGCCCAGCACTCACAGGACACCGGAGGATGGTA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000086882.8
ENSMUST00000238685.2
3UTR-3UTR CCA 90 bp ATAACAAAGGGCAGGATGAGGTCAGATCACCCAAAGGAGCTGAAAGATGTTGTTCAGTTTCTCTCCAAGTaGCTTGGCTCCAGGAGGGAT +
Preference number: 2 (lower is better)
Translates to: ITKGRMRSDHPKELKDVVQFLSK*LGSRRD
Trigger: ATCCCTCCTGGAGCCAAGCCACTTGGAGAGAAACTG...AACAACATCTTTCAGCTCCTTTGGGTGATCTGACCTCATCCTGCCCTTTGTTAT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000086882.8
ENSMUST00000238685.2
3UTR-3UTR TCA 90 bp ATAACAAAGGGCAGGATGAGGTCAGATCACCCAAAGGAGCTGAAAGATGTTGTTAACCTATCTCCTTTGTaGTGGCCAGCCTCAACAGGT +
Preference number: 2 (lower is better)
Translates to: ITKGRMRSDHPKELKDVVNLSPL*WPASTG
Trigger: ACCTGTTGAGGCTGGCCATCACAAAGGAGATAGGTT...AACAACATCTTTCAGCTCCTTTGGGTGATCTGACCTCATCCTGCCCTTTGTTAT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000086882.8
ENSMUST00000238685.2
3UTR-3UTR CCA 90 bp TATCTCCTTTGTGATGGCCAGCCTCAACAGGTGGACTCTACTTGGTCCCTGTTCGCTGGAAGTATGCCTTaGAAACCATTCATTATCTCT +
Preference number: 2 (lower is better)
Translates to: YLLCDGQPQQVDSTWSLFAGSMP*KPFIIS
Trigger: AGAGATAATGAATGGTTTCCAAGGCATACTTCCAGC...GAACAGGGACCAAGTAGAGTCCACCTGTTGAGGCTGGCCATCACAAAGGAGATA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000086882.8
ENSMUST00000238685.2
3UTR-3UTR CCA 90 bp ATAACAAAGGGCAGGATGAGGTCAGATCACCCAAAGGAGCTGAAAGATGTTGTTGGGTCTGCTATGCTCTaGGTACAGTTTCTCTCCAAG +
Preference number: 2 (lower is better)
Translates to: ITKGRMRSDHPKELKDVVGSAML*VQFLSK
Trigger: CTTGGAGAGAAACTGTACCCAGAGCATAGCAGACCC...AACAACATCTTTCAGCTCCTTTGGGTGATCTGACCTCATCCTGCCCTTTGTTAT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000086882.8
ENSMUST00000238685.2
3UTR-3UTR TCA 90 bp TATCTCCTTTGTGATGGCCAGCCTCAACAGGTGGACTCTACTTGGTCCCTGTTCTGTTCCTCACCAACATaGGACAGAAGCATATATATA +
Preference number: 2 (lower is better)
Translates to: YLLCDGQPQQVDSTWSLFCSSPT*DRSIYI
Trigger: TATATATATGCTTCTGTCTCATGTTGGTGAGGAACA...GAACAGGGACCAAGTAGAGTCCACCTGTTGAGGCTGGCCATCACAAAGGAGATA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000086882.8
ENSMUST00000238685.2
3UTR-3UTR TCA 90 bp GAGAGTCTAACAAAGGAGGTGGCCCTGTTTGGCCTTAGGGTGACTAGTTTGCACCATTATCTCTTAGTCTaGCTTTGGTTTAGGGTACTT +
Preference number: 2 (lower is better)
Translates to: ESLTKEVALFGLRVTSLHHYLLV*LWFRVL
Trigger: AAGTACCCTAAACCAAAGTCAGACTAAGAGATAATG...GTGCAAACTAGTCACCCTAAGGCCAAACAGGGCCACCTCCTTTGTTAGACTCTC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000086882.8
ENSMUST00000238685.2
3UTR-3UTR GCA 90 bp TATCTCCTTTGTGATGGCCAGCCTCAACAGGTGGACTCTACTTGGTCCCTGTTCGTCATGAAGAGTTCTTaGTTTCAAATTCAGGCTACT +
Preference number: 2 (lower is better)
Translates to: YLLCDGQPQQVDSTWSLFVMKSS*FQIQAT
Trigger: AGTAGCCTGAATTTGAAAGCAAGAACTCTTCATGAC...GAACAGGGACCAAGTAGAGTCCACCTGTTGAGGCTGGCCATCACAAAGGAGATA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000086882.8
ENSMUST00000238685.2
3UTR-3UTR CCA 90 bp CAGCCTCAACAGGTGGACTCTACTTGGTCCCTGTTCTTATTTTCATTGTGGGCGGCTGGAAGTATGCCTTaGAAACCATTCATTATCTCT +
Preference number: 2 (lower is better)
Translates to: QPQQVDSTWSLFLFSLWAAGSMP*KPFIIS
Trigger: AGAGATAATGAATGGTTTCCAAGGCATACTTCCAGC...CGCCCACAATGAAAATAAGAACAGGGACCAAGTAGAGTCCACCTGTTGAGGCTG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000086882.8
ENSMUST00000238685.2
3UTR-3UTR TCA 90 bp CAGCCTCAACAGGTGGACTCTACTTGGTCCCTGTTCTTATTTTCATTGTGGGCGAAACACCATTGTCACTaGATGGATAGTTTAGTCTTG +
Preference number: 2 (lower is better)
Translates to: QPQQVDSTWSLFLFSLWAKHHCH*MDSLVL
Trigger: CAAGACTAAACTATCCATTCAGTGACAATGGTGTTT...CGCCCACAATGAAAATAAGAACAGGGACCAAGTAGAGTCCACCTGTTGAGGCTG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000086882.8
ENSMUST00000238685.2
3UTR-3UTR TCA 90 bp GAAAGGGGGCCACTCTGCTTATCTCTAGAAGGTGGTCATGAAGAGTTCTTGCTTTGTTCCTCACCAACATaGGACAGAAGCATATATATA +
Preference number: 2 (lower is better)
Translates to: ERGPLCLSLEGGHEEFLLCSSPT*DRSIYI
Trigger: TATATATATGCTTCTGTCTCATGTTGGTGAGGAACA...AAGCAAGAACTCTTCATGACCACCTTCTAGAGATAAGCAGAGTGGCCCCCTTTC
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000086882.8
ENSMUST00000238685.2
3UTR-3UTR GCA 90 bp CAGCCTCAACAGGTGGACTCTACTTGGTCCCTGTTCTTATTTTCATTGTGGGCGAATGTTTTGCCTGCATaGATATATGTATATGCAGTG +
Preference number: 2 (lower is better)
Translates to: QPQQVDSTWSLFLFSLWANVLPA*IYVYAV
Trigger: CACTGCATATACATATATGCATGCAGGCAAAACATT...CGCCCACAATGAAAATAAGAACAGGGACCAAGTAGAGTCCACCTGTTGAGGCTG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000086882.8
ENSMUST00000238685.2
3UTR-3UTR CCA 90 bp ATAACAAAGGGCAGGATGAGGTCAGATCACCCAAAGGAGCTGAAAGATGTTGTTGCAAGGGTTGAAAGATaGTTTCAAGCAGAAGACATC +
Preference number: 2 (lower is better)
Translates to: ITKGRMRSDHPKELKDVVARVER*FQAEDI
Trigger: GATGTCTTCTGCTTGAAACCATCTTTCAACCCTTGC...AACAACATCTTTCAGCTCCTTTGGGTGATCTGACCTCATCCTGCCCTTTGTTAT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000086882.8
ENSMUST00000238685.2
3UTR CAA 90 bp CTGGACAGCTATAATAACAGTTACCAATTCCATGTCAAGGTGCACTaGAAGCTGTATGTCTGTGTTTTTCCTGGTTACTTGGGAGACAGA +
Preference number: 2 (lower is better)
Translates to: LDSYNNSYQFHVKVH*KLYVCVFPGYLGDR
Trigger: TCTGTCTCCCAAGTAACCAGGAAAAACACAGACATACAGCTTCAAGTGCACCTTGACATGGAATTGGTAACTGTTATTATAGCTGTCCAG
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000086882.8
ENSMUST00000238685.2
3UTR-3UTR GCA 90 bp ATAACAAAGGGCAGGATGAGGTCAGATCACCCAAAGGAGCTGAAAGATGTTGTTGTCATGAAGAGTTCTTaGTTTCAAATTCAGGCTACT +
Preference number: 2 (lower is better)
Translates to: ITKGRMRSDHPKELKDVVVMKSS*FQIQAT
Trigger: AGTAGCCTGAATTTGAAAGCAAGAACTCTTCATGAC...AACAACATCTTTCAGCTCCTTTGGGTGATCTGACCTCATCCTGCCCTTTGTTAT
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000086882.8
ENSMUST00000238685.2
3UTR CCA 72 bp GGCCACCCAGCAGCCCTTAGGCTTGGTCAGGTCGGATaGGATGGGCAAGGAAGGACAAACAGGCCTTGGGTC +
Preference number: 3 (lower is better)
Translates to: GHPAALRLGQVG*DGQGRTNRPWV
Trigger: GACCCAAGGCCTGTTTGTCCTTCCTTGCCCATCCCATCCGACCTGACCAAGCCTAAGGGCTGCTGGGTGGCC
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000086882.8
ENSMUST00000238685.2
3UTR GCA 72 bp CCGAAGAGTTTTCGGATAGTACAGCGGCAAAGGTGCTaGAGGCAGCGCGGGGTGTGTGCCAAGGCGAAGAGA +
Preference number: 3 (lower is better)
Translates to: PKSFRIVQRQRC*RQRGVCAKAKR
Trigger: TCTCTTCGCCTTGGCACACACCCCGCGCTGCCTGCAGCACCTTTGCCGCTGTACTATCCGAAAACTCTTCGG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000151330.2
ENSMUST00000154228.8
3UTR GCA 72 bp TTGCCGAAGAGTTTTCGGATAGTACAGCGGCAAAGGTaGTGCAGGCAGCGCGGGGTGTGTGCCAAGGCGAAG +
Preference number: 3 (lower is better)
Translates to: LPKSFRIVQRQR*CRQRGVCAKAK
Trigger: CTTCGCCTTGGCACACACCCCGCGCTGCCTGCAGCACCTTTGCCGCTGTACTATCCGAAAACTCTTCGGCAA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000151330.2
ENSMUST00000154228.8
3UTR TCA 72 bp GGATGGGCAAGGAAGGACAAACAGGCCTTGGGTCTATaGCTGGCCATAGCTGCTTCTGTCTCCTGGGTGGGG +
Preference number: 3 (lower is better)
Translates to: GWARKDKQALGL*LAIAASVSWVG
Trigger: CCCCACCCAGGAGACAGAAGCAGCTATGGCCAGTCATAGACCCAAGGCCTGTTTGTCCTTCCTTGCCCATCC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000086882.8
ENSMUST00000238685.2
3UTR TCA 72 bp CGTGAGTTCTTGGGTGTCCGCTATTGTCCTGACGCCTaGGGGAGGGGCTCCTCTCGGAGTCTTTCAGCACTT +
Preference number: 3 (lower is better)
Translates to: REFLGVRYCPDA*GRGSSRSLSAL
Trigger: AAGTGCTGAAAGACTCCGAGAGGAGCCCCTCCCTCAGGCGTCAGGACAATAGCGGACACCCAAGAACTCACG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000086882.8
ENSMUST00000238685.2
3UTR GCA 72 bp CTGACCCTGGAGTGGGTGTCCTCTGAGCAGGGGGTCTaGTATGCTCTGGGTACAGTTTCTCTCCAAGTGGCT +
Preference number: 3 (lower is better)
Translates to: LTLEWVSSEQGV*YALGTVSLQVA
Trigger: AGCCACTTGGAGAGAAACTGTACCCAGAGCATAGCAGACCCCCTGCTCAGAGGACACCCACTCCAGGGTCAG
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000086882.8
ENSMUST00000238685.2
3UTR CCA 72 bp AGTGGGTGTCCTCTGAGCAGGGGGTCTGCTATGCTCTaGGTACAGTTTCTCTCCAAGTGGCTTGGCTCCAGG +
Preference number: 3 (lower is better)
Translates to: SGCPLSRGSAML*VQFLSKWLGSR
Trigger: CCTGGAGCCAAGCCACTTGGAGAGAAACTGTACCCAGAGCATAGCAGACCCCCTGCTCAGAGGACACCCACT
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000086882.8
ENSMUST00000238685.2
3UTR-3UTR CAA 90 bp CTCTCCTTGCCGAAGAGTTTTCGGATAGTACAGCGGCAAAGGTGCTGCAGGCAGCATGTCCTCAGAACCTaGGGGAAGGCATCAGGCCAC +
Preference number: 3 (lower is better)
Translates to: LSLPKSFRIVQRQRCCRQHVLRT*GKASGH
Trigger: GTGGCCTGATGCCTTCCCCAAGGTTCTGAGGACATG...CTGCCTGCAGCACCTTTGCCGCTGTACTATCCGAAAACTCTTCGGCAAGGAGAG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000151330.2
3UTR GCA 72 bp GCACAATGCTCTGGCCACTCCTTGAACCTGTGTGTCTaGCAATGTTCTGACCAGGTGTGTGCCCATTGCTGC +
Preference number: 3 (lower is better)
Translates to: AQCSGHSLNLCV*QCSDQVCAHCC
Trigger: GCAGCAATGGGCACACACCTGGTCAGAACATTGGCAGACACACAGGTTCAAGGAGTGGCCAGAGCATTGTGC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000086882.8
ENSMUST00000238685.2
3UTR-3UTR CAA 90 bp GAGAGTCTAACAAAGGAGGTGGCCCTGTTTGGCCTTAGGGTGACTAGTTTGCACTGGGCTCTCCTGTGTTaGCAAGCACAATGGGCCCCT +
Preference number: 3 (lower is better)
Translates to: ESLTKEVALFGLRVTSLHWALLC*QAQWAP
Trigger: AGGGGCCCATTGTGCTTGCAAACACAGGAGAGCCCA...GTGCAAACTAGTCACCCTAAGGCCAAACAGGGCCACCTCCTTTGTTAGACTCTC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000086882.8
ENSMUST00000238685.2
3UTR-3UTR CAA 90 bp TTGGTCAGGTCGGATGGGATGGGCAAGGAAGGACAAACAGGCCTTGGGTCTATGGCAAGGCTCCCTGTGTaGAAGCAGCAGAACCAAGAT +
Preference number: 3 (lower is better)
Translates to: LVRSDGMGKEGQTGLGSMARLPV*KQQNQD
Trigger: ATCTTGGTTCTGCTGCTTCAACACAGGGAGCCTTGC...CATAGACCCAAGGCCTGTTTGTCCTTCCTTGCCCATCCCATCCGACCTGACCAA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000086882.8
ENSMUST00000238685.2
3UTR TCA 72 bp CTTGAAGGTATATCTGACCCTGGAGTGGGTGTCCTCTaGGCAGGGGGTCTGCTATGCTCTGGGTACAGTTTC +
Preference number: 3 (lower is better)
Translates to: LEGISDPGVGVL*AGGLLCSGYSF
Trigger: GAAACTGTACCCAGAGCATAGCAGACCCCCTGCTCAGAGGACACCCACTCCAGGGTCAGATATACCTTCAAG
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000086882.8
ENSMUST00000238685.2
3UTR GCA 72 bp AACCAGGTAAGTGCTGGGATTCAATCCCAGGTCCTCTaGAAGAGCAGCCAGTGCTCTTCATTGCTGGACAGC +
Preference number: 3 (lower is better)
Translates to: NQVSAGIQSQVL*KSSQCSSLLDS
Trigger: GCTGTCCAGCAATGAAGAGCACTGGCTGCTCTTGCAGAGGACCTGGGATTGAATCCCAGCACTTACCTGGTT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000086882.8
ENSMUST00000238685.2
3UTR-3UTR CAA 90 bp CAGCCTCAACAGGTGGACTCTACTTGGTCCCTGTTCTTATTTTCATTGTGGGCGTGGGCTCTCCTGTGTTaGCAAGCACAATGGGCCCCT +
Preference number: 3 (lower is better)
Translates to: QPQQVDSTWSLFLFSLWAWALLC*QAQWAP
Trigger: AGGGGCCCATTGTGCTTGCAAACACAGGAGAGCCCA...CGCCCACAATGAAAATAAGAACAGGGACCAAGTAGAGTCCACCTGTTGAGGCTG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000086882.8
ENSMUST00000238685.2
3UTR-3UTR CAA 90 bp TATCTCCTTTGTGATGGCCAGCCTCAACAGGTGGACTCTACTTGGTCCCTGTTCCTGAGACATCCCTCATaGCGGGTGTTTGCTGCAGTC +
Preference number: 3 (lower is better)
Translates to: YLLCDGQPQQVDSTWSLFLRHPS*RVFAAV
Trigger: GACTGCAGCAAACACCCGCAATGAGGGATGTCTCAG...GAACAGGGACCAAGTAGAGTCCACCTGTTGAGGCTGGCCATCACAAAGGAGATA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000086882.8
ENSMUST00000238685.2
3UTR-3UTR CAA 90 bp GTCAGGTCGGATGGGATGGGCAAGGAAGGACAAACAGGCCTTGGGTCTATGACTAGCCAGTGCTCTTCATaGCTGGACAGCTATAATAAC +
Preference number: 3 (lower is better)
Translates to: VRSDGMGKEGQTGLGSMTSQCSS*LDSYNN
Trigger: GTTATTATAGCTGTCCAGCAATGAAGAGCACTGGCT...AGTCATAGACCCAAGGCCTGTTTGTCCTTCCTTGCCCATCCCATCCGACCTGAC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000086882.8
ENSMUST00000238685.2
3UTR TCA 72 bp GGGTTGAAAGATGGTTTCAAGCAGAAGACATCTAAGTaGCCAAGGTCGGGCTTACCATCCTCCGGTGTCCTG +
Preference number: 3 (lower is better)
Translates to: GLKDGFKQKTSK*PRSGLPSSGVL
Trigger: CAGGACACCGGAGGATGGTAAGCCCGACCTTGGTCACTTAGATGTCTTCTGCTTGAAACCATCTTTCAACCC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000086882.8
ENSMUST00000238685.2
3UTR TCA 72 bp GCCATGGAGAGGTTTAGGCAGAGCAGTATTCCTAAGTaGGAGTCTAACAAAGGAGGTGGCCCTGTTTGGCCT +
Preference number: 3 (lower is better)
Translates to: AMERFRQSSIPK*ESNKGGGPVWP
Trigger: AGGCCAAACAGGGCCACCTCCTTTGTTAGACTCTCACTTAGGAATACTGCTCTGCCTAAACCTCTCCATGGC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000086882.8
ENSMUST00000238685.2
3UTR GCA 72 bp GGAGTTGAACAGAACTTCAATGACTTCAGGCACCTGTaGACATGTCCTCAGAACCTTGGGGAAGGCATCAGG +
Preference number: 3 (lower is better)
Translates to: GVEQNFNDFRHL*TCPQNLGEGIR
Trigger: CCTGATGCCTTCCCCAAGGTTCTGAGGACATGTGCACAGGTGCCTGAAGTCATTGAAGTTCTGTTCAACTCC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000151330.2
3UTR TCA 72 bp CTTGGTCCCTGTTCTTATTTTCATTGTGGGCGTTGCTaGGACATCCCTCATTGCGGGTGTTTGCTGCAGTCT +
Preference number: 3 (lower is better)
Translates to: LGPCSYFHCGRC*DIPHCGCLLQS
Trigger: AGACTGCAGCAAACACCCGCAATGAGGGATGTCTCAGCAACGCCCACAATGAAAATAAGAACAGGGACCAAG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000086882.8
ENSMUST00000238685.2
3UTR-3UTR CAA 90 bp ATAACAAAGGGCAGGATGAGGTCAGATCACCCAAAGGAGCTGAAAGATGTTGTTTGCTCTGGCCACTCCTaGAACCTGTGTGTCTGCCAA +
Preference number: 3 (lower is better)
Translates to: ITKGRMRSDHPKELKDVVCSGHS*NLCVCQ
Trigger: TTGGCAGACACACAGGTTCAAGGAGTGGCCAGAGCA...AACAACATCTTTCAGCTCCTTTGGGTGATCTGACCTCATCCTGCCCTTTGTTAT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000086882.8
ENSMUST00000238685.2
3UTR GCA 72 bp GGGATTCAATCCCAGGTCCTCTGCAAGAGCAGCCAGTaGTCTTCATTGCTGGACAGCTATAATAACAGTTAC +
Preference number: 3 (lower is better)
Translates to: GIQSQVLCKSSQ*SSLLDSYNNSY
Trigger: GTAACTGTTATTATAGCTGTCCAGCAATGAAGAGCACTGGCTGCTCTTGCAGAGGACCTGGGATTGAATCCC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000086882.8
ENSMUST00000238685.2
3UTR GCA 72 bp ACTGGAGTTATGAATGATTGTGCACAACCAGGTAAGTaGTGGGATTCAATCCCAGGTCCTCTGCAAGAGCAG +
Preference number: 3 (lower is better)
Translates to: TGVMNDCAQPGK*WDSIPGPLQEQ
Trigger: CTGCTCTTGCAGAGGACCTGGGATTGAATCCCAGCACTTACCTGGTTGTGCACAATCATTCATAACTCCAGT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000086882.8
ENSMUST00000238685.2
3UTR-3UTR CAA 90 bp ATAACAAAGGGCAGGATGAGGTCAGATCACCCAAAGGAGCTGAAAGATGTTGTTGCAAGGCTCCCTGTGTaGAAGCAGCAGAACCAAGAT +
Preference number: 3 (lower is better)
Translates to: ITKGRMRSDHPKELKDVVARLPV*KQQNQD
Trigger: ATCTTGGTTCTGCTGCTTCAACACAGGGAGCCTTGC...AACAACATCTTTCAGCTCCTTTGGGTGATCTGACCTCATCCTGCCCTTTGTTAT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000086882.8
ENSMUST00000238685.2
3UTR-3UTR CAA 90 bp TATCTCCTTTGTGATGGCCAGCCTCAACAGGTGGACTCTACTTGGTCCCTGTTCGGTCATGAAGAGTTCTaGCTTTCAAATTCAGGCTAC +
Preference number: 3 (lower is better)
Translates to: YLLCDGQPQQVDSTWSLFGHEEF*LSNSGY
Trigger: GTAGCCTGAATTTGAAAGCAAGAACTCTTCATGACC...GAACAGGGACCAAGTAGAGTCCACCTGTTGAGGCTGGCCATCACAAAGGAGATA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000086882.8
ENSMUST00000238685.2
3UTR CCA 72 bp CAAGGTGCACTTGAAGCTGTATGTCTGTGTTTTTCCTaGTTACTTGGGAGACAGAAGGGGGTAGACATGTAC +
Preference number: 3 (lower is better)
Translates to: QGALEAVCLCFS*LLGRQKGVDMY
Trigger: GTACATGTCTACCCCCTTCTGTCTCCCAAGTAACCAGGAAAAACACAGACATACAGCTTCAAGTGCACCTTG
47% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000086882.8
ENSMUST00000238685.2
3UTR TCA 72 bp AAGGGGGCCACTCTGCTTATCTCTAGAAGGTGGTCATaGAGAGTTCTTGCTTTCAAATTCAGGCTACTGGAT +
Preference number: 3 (lower is better)
Translates to: KGATLLISRRWS*RVLAFKFRLLD
Trigger: ATCCAGTAGCCTGAATTTGAAAGCAAGAACTCTTCATGACCACCTTCTAGAGATAAGCAGAGTGGCCCCCTT
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000086882.8
ENSMUST00000238685.2
3UTR TCA 72 bp ATTGTAGCAGCAATAGGAATGTCTGCCCATCCACTGTaGGGTTCACTTCAGACCATCTATCTCATCCTAGCT +
Preference number: 3 (lower is better)
Translates to: IVAAIGMSAHPL*GSLQTIYLILA
Trigger: AGCTAGGATGAGATAGATGGTCTGAAGTGAACCTCACAGTGGATGGGCAGACATTCCTATTGCTGCTACAAT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000086882.8
ENSMUST00000238685.2
3UTR CCA 72 bp CAACCTATCTCCTTTGTGATGGCCAGCCTCAACAGGTaGACTCTACTTGGTCCCTGTTCTTATTTTCATTGT +
Preference number: 3 (lower is better)
Translates to: QPISFVMASLNR*TLLGPCSYFHC
Trigger: ACAATGAAAATAAGAACAGGGACCAAGTAGAGTCCACCTGTTGAGGCTGGCCATCACAAAGGAGATAGGTTG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000086882.8
ENSMUST00000238685.2
3UTR CCA 72 bp ATGAAGAGTTCTTGCTTTCAAATTCAGGCTACTGGATaGCTCCCTGGTAGAGCCTTTACCAAAGGCATAAGA +
Preference number: 3 (lower is better)
Translates to: MKSSCFQIQATG*LPGRAFTKGIR
Trigger: TCTTATGCCTTTGGTAAAGGCTCTACCAGGGAGCCATCCAGTAGCCTGAATTTGAAAGCAAGAACTCTTCAT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000086882.8
ENSMUST00000238685.2
3UTR TCA 72 bp TTTGCCAATATTTACCAGAGTGGGACTAGCAAGGGTTaGAAGATGGTTTCAAGCAGAAGACATCTAAGTGAC +
Preference number: 3 (lower is better)
Translates to: FANIYQSGTSKG*KMVSSRRHLSD
Trigger: GTCACTTAGATGTCTTCTGCTTGAAACCATCTTTCAACCCTTGCTAGTCCCACTCTGGTAAATATTGGCAAA
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000086882.8
ENSMUST00000238685.2
3UTR TCA 72 bp ATAATAACAGTTACCAATTCCATGTCAAGGTGCACTTaGAGCTGTATGTCTGTGTTTTTCCTGGTTACTTGG +
Preference number: 3 (lower is better)
Translates to: IITVTNSMSRCT*SCMSVFFLVTW
Trigger: CCAAGTAACCAGGAAAAACACAGACATACAGCTTCAAGTGCACCTTGACATGGAATTGGTAACTGTTATTAT
39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000086882.8
ENSMUST00000238685.2
3UTR TCA 72 bp AGCCTCGTGCCACTAACTGCGTGTTCCTCACCAACATaGGACAGAAGCATATATATATATATATACATACAT +
Preference number: 3 (lower is better)
Translates to: SLVPLTACSSPT*DRSIYIYIYIH
Trigger: ATGTATGTATATATATATATATATGCTTCTGTCTCATGTTGGTGAGGAACACGCAGTTAGTGGCACGAGGCT
39% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000086882.8
ENSMUST00000238685.2
3UTR GCA 72 bp ATTTATTTACCTTATTTCACGAATGTTTTGCCTGCATaGATATATGTATATGCAGTGCCCATAGAGGTCCCT +
Preference number: 3 (lower is better)
Translates to: IYLPYFTNVLPA*IYVYAVPIEVP
Trigger: AGGGACCTCTATGGGCACTGCATATACATATATGCATGCAGGCAAAACATTCGTGAAATAAGGTAAATAAAT
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000086882.8
ENSMUST00000238685.2
3UTR GCA 72 bp CAACATTTATTTACCTTATTTCACGAATGTTTTGCCTaGATGCATATATGTATATGCAGTGCCCATAGAGGT +
Preference number: 3 (lower is better)
Translates to: QHLFTLFHECFA*MHICICSAHRG
Trigger: ACCTCTATGGGCACTGCATATACATATATGCATGCAGGCAAAACATTCGTGAAATAAGGTAAATAAATGTTG
36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000086882.8
ENSMUST00000238685.2
CDS-3UTR CCA 90 bp GGCAGCGCGGGGTGTGTGCCAAGGCGAAGAGAGACCTGTAGAAAGGCTTGTGCACGCACGCAGGACTCGTaGCCGTGGGCCGCAGCGATG +
Preference number: 4 (lower is better)
Translates to: GSAGCVPRRRETCRKACARTQDS*PWAAAM
Trigger: CATCGCTGCGGCCCACGGCCACGAGTCCTGCGTGCG...TGCACAAGCCTTTCTACAGGTCTCTCTTCGCCTTGGCACACACCCCGCGCTGCC
66% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000154228.8
CDS-3UTR GCA 90 bp CCAGGTAAGTGCTGGGATTCAATCCCAGGTCCTCTGCAAGAGCAGCCAGTGCTCGGTGTGCGGCATAGGTaGAGGGGTGCCAGGCCCTCG +
Preference number: 4 (lower is better)
Translates to: PGKCWDSIPGPLQEQPVLGVRHR*RGARPS
Trigger: CGAGGGCCTGGCACCCCTGCACCTATGCCGCACACC...GAGCACTGGCTGCTCTTGCAGAGGACCTGGGATTGAATCCCAGCACTTACCTGG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000086882.8
ENSMUST00000238685.2
CDS-3UTR GCA 90 bp GGCTTCCCGCCAGGACTCAGACACTGGGAGCTGAGTGTAGGAGTTGAACAGAACGGTGTGCGGCATAGGTaGAGGGGTGCCAGGCCCTCG +
Preference number: 4 (lower is better)
Translates to: GFPPGLRHWELSVGVEQNGVRHR*RGARPS
Trigger: CGAGGGCCTGGCACCCCTGCACCTATGCCGCACACC...GTTCTGTTCAACTCCTACACTCAGCTCCCAGTGTCTGAGTCCTGGCGGGAAGCC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000154228.8
CDS-3UTR CCA 90 bp TTGGTCAGGTCGGATGGGATGGGCAAGGAAGGACAAACAGGCCTTGGGTCTATGCGCACGCAGGACTCGTaGCCGTGGGCCGCAGCGATG +
Preference number: 4 (lower is better)
Translates to: LVRSDGMGKEGQTGLGSMRTQDS*PWAAAM
Trigger: CATCGCTGCGGCCCACGGCCACGAGTCCTGCGTGCG...CATAGACCCAAGGCCTGTTTGTCCTTCCTTGCCCATCCCATCCGACCTGACCAA
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000086882.8
ENSMUST00000238685.2
CDS-3UTR GCA 90 bp TACTTCTTCAGGGATGGCTTCCCGCCAGGACTCAGACACTGGGAGCTGAGTGTACAAGCGAGGCGGGTGTaGGGCATAGGTGCAGGGGTG +
Preference number: 4 (lower is better)
Translates to: YFFRDGFPPGLRHWELSVQARRV*GIGAGV
Trigger: CACCCCTGCACCTATGCCGCACACCCGCCTCGCTTG...TACACTCAGCTCCCAGTGTCTGAGTCCTGGCGGGAAGCCATCCCTGAAGAAGTA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000154228.8
CDS-3UTR GCA 90 bp CCAGGGTTCTGTCCCTCACATAGAACCTCTGCAGAAAGGGGAAGATGCAGAGAATGGCCGCAGGCCTTGTaGAGCGGGCTGCGCTCGTCC +
Preference number: 4 (lower is better)
Translates to: PGFCPSHRTSAERGRCREWPQAL*SGLRSS
Trigger: GGACGAGCGCAGCCCGCTGCACAAGGCCTGCGGCCA...TTCTCTGCATCTTCCCCTTTCTGCAGAGGTTCTATGTGAGGGACAGAACCCTGG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000086882.8
ENSMUST00000238685.2
CDS-3UTR GCA 90 bp TACCATCCTCCGGTGTCCTGTGAGTGCTGGGCTCTCCTGTGTTTGCAAGCACAACAGCGGCAAAGGTGCTaGAGGCAGCGCGGGGTGTGT +
Preference number: 4 (lower is better)
Translates to: YHPPVSCECWALLCLQAQQRQRC*RQRGVC
Trigger: ACACACCCCGCGCTGCCTGCAGCACCTTTGCCGCTG...TTGTGCTTGCAAACACAGGAGAGCCCAGCACTCACAGGACACCGGAGGATGGTA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000086882.8
ENSMUST00000238685.2
CDS-3UTR CCA 90 bp GAGAGTCTAACAAAGGAGGTGGCCCTGTTTGGCCTTAGGGTGACTAGTTTGCACCGCACGCAGGACTCGTaGCCGTGGGCCGCAGCGATG +
Preference number: 4 (lower is better)
Translates to: ESLTKEVALFGLRVTSLHRTQDS*PWAAAM
Trigger: CATCGCTGCGGCCCACGGCCACGAGTCCTGCGTGCG...GTGCAAACTAGTCACCCTAAGGCCAAACAGGGCCACCTCCTTTGTTAGACTCTC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000086882.8
ENSMUST00000238685.2
3UTR CAA 72 bp ATGACTTCAGGCACCTGTGCACATGTCCTCAGAACCTaGGGGAAGGCATCAGGCCACACGGAGCGGGATCCG +
Preference number: 4 (lower is better)
Translates to: MTSGTCAHVLRT*GKASGHTERDP
Trigger: CGGATCCCGCTCCGTGTGGCCTGATGCCTTCCCCAAGGTTCTGAGGACATGTGCACAGGTGCCTGAAGTCAT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000151330.2
CDS-3UTR GCA 90 bp TTGGCTCCAGGAGGGATGGGAGCCTCTCCTGTAAGTCCAAGAGTCAATAACCCACAAGCGAGGCGGGTGTaGGGCATAGGTGCAGGGGTG +
Preference number: 4 (lower is better)
Translates to: LAPGGMGASPVSPRVNNPQARRV*GIGAGV
Trigger: CACCCCTGCACCTATGCCGCACACCCGCCTCGCTTG...TGGGTTATTGACTCTTGGACTTACAGGAGAGGCTCCCATCCCTCCTGGAGCCAA
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000086882.8
ENSMUST00000238685.2
CDS-3UTR GCA 90 bp CAGGGTTCTGTCCCTCACATAGAACCTCTGCAGAAAGGGGAAGATGCAGAGAAGCCTTGTGCAGCGGGCTaGGCTCGTCCTCGTCACGCG +
Preference number: 4 (lower is better)
Translates to: QGSVPHIEPLQKGEDAEKPCAAG*ARPRHA
Trigger: CGCGTGACGAGGACGAGCGCAGCCCGCTGCACAAGG...CTTCTCTGCATCTTCCCCTTTCTGCAGAGGTTCTATGTGAGGGACAGAACCCTG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000086882.8
ENSMUST00000238685.2
CDS-3UTR GCA 90 bp CAGCCTCAACAGGTGGACTCTACTTGGTCCCTGTTCTTATTTTCATTGTGGGCGTGGCCGCAGGCCTTGTaGAGCGGGCTGCGCTCGTCC +
Preference number: 4 (lower is better)
Translates to: QPQQVDSTWSLFLFSLWAWPQAL*SGLRSS
Trigger: GGACGAGCGCAGCCCGCTGCACAAGGCCTGCGGCCA...CGCCCACAATGAAAATAAGAACAGGGACCAAGTAGAGTCCACCTGTTGAGGCTG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000086882.8
ENSMUST00000238685.2
CDS-3UTR GCA 90 bp CCTGCATGGGATATGAGTCGTCCCCAGAGCTCTGGCTTTCCCCGAATAAAGCCTGCAGCGCGGGGTGTGTaGCAAGGCGAAGAGAGACCT +
Preference number: 4 (lower is better)
Translates to: PAWDMSRPQSSGFPRIKPAARGV*QGEERP
Trigger: AGGTCTCTCTTCGCCTTGGCACACACCCCGCGCTGC...AGGCTTTATTCGGGGAAAGCCAGAGCTCTGGGGACGACTCATATCCCATGCAGG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000086882.8
ENSMUST00000238685.2
CDS-3UTR GCA 90 bp CTGGGATTCAATCCCAGGTCCTCTGCAAGAGCAGCCAGTGCTCTTCATTGCTGGGCAGCGCGGGGTGTGTaGCAAGGCGAAGAGAGACCT +
Preference number: 4 (lower is better)
Translates to: LGFNPRSSARAASALHCWAARGV*QGEERP
Trigger: AGGTCTCTCTTCGCCTTGGCACACACCCCGCGCTGC...CCAGCAATGAAGAGCACTGGCTGCTCTTGCAGAGGACCTGGGATTGAATCCCAG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000086882.8
ENSMUST00000238685.2
CDS-3UTR GCA 90 bp TTGGCTCCAGGAGGGATGGGAGCCTCTCCTGTAAGTCCAAGAGTCAATAACCCACAGCGGCAAAGGTGCTaGAGGCAGCGCGGGGTGTGT +
Preference number: 4 (lower is better)
Translates to: LAPGGMGASPVSPRVNNPQRQRC*RQRGVC
Trigger: ACACACCCCGCGCTGCCTGCAGCACCTTTGCCGCTG...TGGGTTATTGACTCTTGGACTTACAGGAGAGGCTCCCATCCCTCCTGGAGCCAA
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000086882.8
ENSMUST00000238685.2
CDS-3UTR CCA 90 bp GTAGAAAGGCTTGTGCATCTGGTATACTTCTTCAGGGATGGCTTCCCGCCAGGACAGGACTCGTGGCCGTaGGCCGCAGCGATGCACAGC +
Preference number: 4 (lower is better)
Translates to: VERLVHLVYFFRDGFPPGQDSWP*AAAMHS
Trigger: GCTGTGCATCGCTGCGGCCCACGGCCACGAGTCCTG...TCCTGGCGGGAAGCCATCCCTGAAGAAGTATACCAGATGCACAAGCCTTTCTAC
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000154228.8
CDS-3UTR GCA 90 bp CAGGGTTCTGTCCCTCACATAGAACCTCTGCAGAAAGGGGAAGATGCAGAGAAGCAGCGGCAAAGGTGCTaGAGGCAGCGCGGGGTGTGT +
Preference number: 4 (lower is better)
Translates to: QGSVPHIEPLQKGEDAEKQRQRC*RQRGVC
Trigger: ACACACCCCGCGCTGCCTGCAGCACCTTTGCCGCTG...CTTCTCTGCATCTTCCCCTTTCTGCAGAGGTTCTATGTGAGGGACAGAACCCTG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000086882.8
ENSMUST00000097656.10
ENSMUST00000238685.2
CDS-3UTR GCA 90 bp TATCTCCTTTGTGATGGCCAGCCTCAACAGGTGGACTCTACTTGGTCCCTGTTCGTACAGCGGCAAAGGTaGTGCAGGCAGCGCGGGGTG +
Preference number: 4 (lower is better)
Translates to: YLLCDGQPQQVDSTWSLFVQRQR*CRQRGV
Trigger: CACCCCGCGCTGCCTGCAGCACCTTTGCCGCTGTAC...GAACAGGGACCAAGTAGAGTCCACCTGTTGAGGCTGGCCATCACAAAGGAGATA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000086882.8
ENSMUST00000238685.2
CDS-3UTR GCA 90 bp CAGGGTTCTGTCCCTCACATAGAACCTCTGCAGAAAGGGGAAGATGCAGAGAAGGTACAGCGGCAAAGGTaGTGCAGGCAGCGCGGGGTG +
Preference number: 4 (lower is better)
Translates to: QGSVPHIEPLQKGEDAEKVQRQR*CRQRGV
Trigger: CACCCCGCGCTGCCTGCAGCACCTTTGCCGCTGTAC...CTTCTCTGCATCTTCCCCTTTCTGCAGAGGTTCTATGTGAGGGACAGAACCCTG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000086882.8
ENSMUST00000097656.10
ENSMUST00000238685.2
CDS-3UTR GCA 90 bp CCAGGGTTCTGTCCCTCACATAGAACCTCTGCAGAAAGGGGAAGATGCAGAGAAGTACAGCGGCAAAGGTaGTGCAGGCAGCGCGGGGTG +
Preference number: 4 (lower is better)
Translates to: PGFCPSHRTSAERGRCREVQRQR*CRQRGV
Trigger: CACCCCGCGCTGCCTGCAGCACCTTTGCCGCTGTAC...TTCTCTGCATCTTCCCCTTTCTGCAGAGGTTCTATGTGAGGGACAGAACCCTGG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000086882.8
ENSMUST00000097656.10
ENSMUST00000238685.2
CDS-3UTR GCA 90 bp CTGGGATTCAATCCCAGGTCCTCTGCAAGAGCAGCCAGTGCTCTTCATTGCTGGGTGGTCCAGGTCTCCTaGCAGCAGTGCAGCGTGGAA +
Preference number: 4 (lower is better)
Translates to: LGFNPRSSARAASALHCWVVQVS*QQCSVE
Trigger: TTCCACGCTGCACTGCTGGCAGGAGACCTGGACCAC...CCAGCAATGAAGAGCACTGGCTGCTCTTGCAGAGGACCTGGGATTGAATCCCAG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000238685.2
CDS-3UTR CCA 90 bp CCTGCATGGGATATGAGTCGTCCCCAGAGCTCTGGCTTTCCCCGAATAAAGCCTGTGGTGAGCTCCCGCTaGTACTCCAGGGTCCAAAGG +
Preference number: 4 (lower is better)
Translates to: PAWDMSRPQSSGFPRIKPVVSSR*YSRVQR
Trigger: CCTTTGGACCCTGGAGTACCAGCGGGAGCTCACCAC...AGGCTTTATTCGGGGAAAGCCAGAGCTCTGGGGACGACTCATATCCCATGCAGG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000086882.8
ENSMUST00000238685.2
CDS-3UTR CCA 90 bp TCTGGTATACTTCTTCAGGGATGGCTTCCCGCCAGGACTCAGACACTGGGAGCTGTGGTGAGCTCCCGCTaGTACTCCAGGGTCCAAAGG +
Preference number: 4 (lower is better)
Translates to: SGILLQGWLPARTQTLGAVVSSR*YSRVQR
Trigger: CCTTTGGACCCTGGAGTACCAGCGGGAGCTCACCAC...AGCTCCCAGTGTCTGAGTCCTGGCGGGAAGCCATCCCTGAAGAAGTATACCAGA
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000151330.2
ENSMUST00000154228.8
3UTR CAA 72 bp CACTTATACCACAGGGCCACCCAGCAGCCCTTAGGCTaGGTCAGGTCGGATGGGATGGGCAAGGAAGGACAA +
Preference number: 4 (lower is better)
Translates to: HLYHRATQQPLG*VRSDGMGKEGQ
Trigger: TTGTCCTTCCTTGCCCATCCCATCCGACCTGACCAAGCCTAAGGGCTGCTGGGTGGCCCTGTGGTATAAGTG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000086882.8
ENSMUST00000238685.2
CDS-3UTR TCA 90 bp TATCTCCTTTGTGATGGCCAGCCTCAACAGGTGGACTCTACTTGGTCCCTGTTCTGCACAGCGGTGTGGTaGGCTCCCGCTGGTACTCCA +
Preference number: 4 (lower is better)
Translates to: YLLCDGQPQQVDSTWSLFCTAVW*APAGTP
Trigger: TGGAGTACCAGCGGGAGCTCACCACACCGCTGTGCA...GAACAGGGACCAAGTAGAGTCCACCTGTTGAGGCTGGCCATCACAAAGGAGATA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000086882.8
ENSMUST00000238685.2
CDS-3UTR GCA 90 bp GAAAGGGGGCCACTCTGCTTATCTCTAGAAGGTGGTCATGAAGAGTTCTTGCTTCCTTGTGCAGCGGGCTaGGCTCGTCCTCGTCACGCG +
Preference number: 4 (lower is better)
Translates to: ERGPLCLSLEGGHEEFLLPCAAG*ARPRHA
Trigger: CGCGTGACGAGGACGAGCGCAGCCCGCTGCACAAGG...AAGCAAGAACTCTTCATGACCACCTTCTAGAGATAAGCAGAGTGGCCCCCTTTC
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000086882.8
ENSMUST00000238685.2
CDS-3UTR GCA 90 bp CAGGGTTCTGTCCCTCACATAGAACCTCTGCAGAAAGGGGAAGATGCAGAGAAGGCAGCGCGGGGTGTGTaGCAAGGCGAAGAGAGACCT +
Preference number: 4 (lower is better)
Translates to: QGSVPHIEPLQKGEDAEKAARGV*QGEERP
Trigger: AGGTCTCTCTTCGCCTTGGCACACACCCCGCGCTGC...CTTCTCTGCATCTTCCCCTTTCTGCAGAGGTTCTATGTGAGGGACAGAACCCTG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000086882.8
ENSMUST00000097656.10
ENSMUST00000238685.2
CDS-3UTR CCA 90 bp TACCATCCTCCGGTGTCCTGTGAGTGCTGGGCTCTCCTGTGTTTGCAAGCACAAGCATCCCAGAAGCACTaGTCCATGAGGAGCCGGATG +
Preference number: 4 (lower is better)
Translates to: YHPPVSCECWALLCLQAQASQKH*SMRSRM
Trigger: CATCCGGCTCCTCATGGACCAGTGCTTCTGGGATGC...TTGTGCTTGCAAACACAGGAGAGCCCAGCACTCACAGGACACCGGAGGATGGTA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000086882.8
ENSMUST00000238685.2
CDS-3UTR CCA 90 bp CCTGCATGGGATATGAGTCGTCCCCAGAGCTCTGGCTTTCCCCGAATAAAGCCTGCATCCCAGAAGCACTaGTCCATGAGGAGCCGGATG +
Preference number: 4 (lower is better)
Translates to: PAWDMSRPQSSGFPRIKPASQKH*SMRSRM
Trigger: CATCCGGCTCCTCATGGACCAGTGCTTCTGGGATGC...AGGCTTTATTCGGGGAAAGCCAGAGCTCTGGGGACGACTCATATCCCATGCAGG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000086882.8
ENSMUST00000238685.2
CDS-3UTR CCA 90 bp GTGAACGCTCTCCTTGCCGAAGAGTTTTCGGATAGTACAGCGGCAAAGGTGCTGGTGGTGAGCTCCCGCTaGTACTCCAGGGTCCAAAGG +
Preference number: 4 (lower is better)
Translates to: VNALLAEEFSDSTAAKVLVVSSR*YSRVQR
Trigger: CCTTTGGACCCTGGAGTACCAGCGGGAGCTCACCAC...CAGCACCTTTGCCGCTGTACTATCCGAAAACTCTTCGGCAAGGAGAGCGTTCAC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000151330.2
ENSMUST00000154228.8
CDS-3UTR CCA 90 bp GAAAGGGGGCCACTCTGCTTATCTCTAGAAGGTGGTCATGAAGAGTTCTTGCTTCAGGACTCGTGGCCGTaGGCCGCAGCGATGCACAGC +
Preference number: 4 (lower is better)
Translates to: ERGPLCLSLEGGHEEFLLQDSWP*AAAMHS
Trigger: GCTGTGCATCGCTGCGGCCCACGGCCACGAGTCCTG...AAGCAAGAACTCTTCATGACCACCTTCTAGAGATAAGCAGAGTGGCCCCCTTTC
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000086882.8
ENSMUST00000238685.2
CDS-3UTR TCA 90 bp CAGCCTCAACAGGTGGACTCTACTTGGTCCCTGTTCTTATTTTCATTGTGGGCGTGCACAGCGGTGTGGTaGGCTCCCGCTGGTACTCCA +
Preference number: 4 (lower is better)
Translates to: QPQQVDSTWSLFLFSLWACTAVW*APAGTP
Trigger: TGGAGTACCAGCGGGAGCTCACCACACCGCTGTGCA...CGCCCACAATGAAAATAAGAACAGGGACCAAGTAGAGTCCACCTGTTGAGGCTG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000086882.8
ENSMUST00000238685.2
CDS-3UTR CCA 90 bp CAGGGTTCTGTCCCTCACATAGAACCTCTGCAGAAAGGGGAAGATGCAGAGAAGGTGGTGAGCTCCCGCTaGTACTCCAGGGTCCAAAGG +
Preference number: 4 (lower is better)
Translates to: QGSVPHIEPLQKGEDAEKVVSSR*YSRVQR
Trigger: CCTTTGGACCCTGGAGTACCAGCGGGAGCTCACCAC...CTTCTCTGCATCTTCCCCTTTCTGCAGAGGTTCTATGTGAGGGACAGAACCCTG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000086882.8
ENSMUST00000097656.10
ENSMUST00000238685.2
CDS-3UTR CCA 90 bp TATCTCCTTTGTGATGGCCAGCCTCAACAGGTGGACTCTACTTGGTCCCTGTTCGTGGTGAGCTCCCGCTaGTACTCCAGGGTCCAAAGG +
Preference number: 4 (lower is better)
Translates to: YLLCDGQPQQVDSTWSLFVVSSR*YSRVQR
Trigger: CCTTTGGACCCTGGAGTACCAGCGGGAGCTCACCAC...GAACAGGGACCAAGTAGAGTCCACCTGTTGAGGCTGGCCATCACAAAGGAGATA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000086882.8
ENSMUST00000238685.2
CDS-3UTR CCA 90 bp CCAGGTAAGTGCTGGGATTCAATCCCAGGTCCTCTGCAAGAGCAGCCAGTGCTCATGTCCTCAGAACCTTaGGGAAGGCATCAGGCCACA +
Preference number: 4 (lower is better)
Translates to: PGKCWDSIPGPLQEQPVLMSSEP*GRHQAT
Trigger: TGTGGCCTGATGCCTTCCCCAAGGTTCTGAGGACAT...GAGCACTGGCTGCTCTTGCAGAGGACCTGGGATTGAATCCCAGCACTTACCTGG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000086882.8
ENSMUST00000238685.2
3UTR CAA 72 bp CTGCTATGCTCTGGGTACAGTTTCTCTCCAAGTGGCTaGGCTCCAGGAGGGATGGGAGCCTCTCCTGTAAGT +
Preference number: 4 (lower is better)
Translates to: LLCSGYSFSPSG*APGGMGASPVS
Trigger: ACTTACAGGAGAGGCTCCCATCCCTCCTGGAGCCAAGCCACTTGGAGAGAAACTGTACCCAGAGCATAGCAG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000086882.8
ENSMUST00000238685.2
CDS-3UTR TCA 90 bp GAGCTGAGTGTAGGAGTTGAACAGAACTTCAATGACTTCAGGCACCTGTGCACATGCACAGCGGTGTGGTaGGCTCCCGCTGGTACTCCA +
Preference number: 4 (lower is better)
Translates to: ELSVGVEQNFNDFRHLCTCTAVW*APAGTP
Trigger: TGGAGTACCAGCGGGAGCTCACCACACCGCTGTGCA...TGTGCACAGGTGCCTGAAGTCATTGAAGTTCTGTTCAACTCCTACACTCAGCTC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000154228.8
3UTR CAA 72 bp AGGGGCTGTCCCTTAGGGCCAGCAAGGCTCCCTGTGTaGAAGCAGCAGAACCAAGATGTAAGGATTAAGGGA +
Preference number: 4 (lower is better)
Translates to: RGCPLGPARLPV*KQQNQDVRIKG
Trigger: TCCCTTAATCCTTACATCTTGGTTCTGCTGCTTCAACACAGGGAGCCTTGCTGGCCCTAAGGGACAGCCCCT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000086882.8
ENSMUST00000238685.2
CDS-3UTR GCA 90 bp TTGGCTCCAGGAGGGATGGGAGCCTCTCCTGTAAGTCCAAGAGTCAATAACCCAGCCAGGGATGTCACCTaGCATTCCATCTCTCCGTTA +
Preference number: 4 (lower is better)
Translates to: LAPGGMGASPVSPRVNNPARDVT*HSISPL
Trigger: TAACGGAGAGATGGAATGGCAGGTGACATCCCTGGC...TGGGTTATTGACTCTTGGACTTACAGGAGAGGCTCCCATCCCTCCTGGAGCCAA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000086882.8
ENSMUST00000238685.2
CDS-3UTR GCA 90 bp ATAACAAAGGGCAGGATGAGGTCAGATCACCCAAAGGAGCTGAAAGATGTTGTTCAAGCGAGGCGGGTGTaGGGCATAGGTGCAGGGGTG +
Preference number: 4 (lower is better)
Translates to: ITKGRMRSDHPKELKDVVQARRV*GIGAGV
Trigger: CACCCCTGCACCTATGCCGCACACCCGCCTCGCTTG...AACAACATCTTTCAGCTCCTTTGGGTGATCTGACCTCATCCTGCCCTTTGTTAT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000086882.8
ENSMUST00000238685.2
CDS-3UTR CCA 90 bp TTGGCTCCAGGAGGGATGGGAGCCTCTCCTGTAAGTCCAAGAGTCAATAACCCATCTCAAACACCGCGTTaGCATCCCAGAAGCACTGGT +
Preference number: 4 (lower is better)
Translates to: LAPGGMGASPVSPRVNNPSQTPR*HPRSTG
Trigger: ACCAGTGCTTCTGGGATGCCAACGCGGTGTTTGAGA...TGGGTTATTGACTCTTGGACTTACAGGAGAGGCTCCCATCCCTCCTGGAGCCAA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000086882.8
ENSMUST00000238685.2
CDS-3UTR CCA 90 bp GAAAGGGGGCCACTCTGCTTATCTCTAGAAGGTGGTCATGAAGAGTTCTTGCTTCTGAGAGCCCAAAGGTaGCCAGGGATGTCACCTGCC +
Preference number: 4 (lower is better)
Translates to: ERGPLCLSLEGGHEEFLLLRAQR*PGMSPA
Trigger: GGCAGGTGACATCCCTGGCCACCTTTGGGCTCTCAG...AAGCAAGAACTCTTCATGACCACCTTCTAGAGATAAGCAGAGTGGCCCCCTTTC
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000086882.8
ENSMUST00000238685.2
CDS-3UTR CCA 90 bp TATCTCCTTTGTGATGGCCAGCCTCAACAGGTGGACTCTACTTGGTCCCTGTTCCAGCTTTCTCCCAGCTaGCTCTGGTCGTCTCTCCAT +
Preference number: 4 (lower is better)
Translates to: YLLCDGQPQQVDSTWSLFQLSPS*LWSSLH
Trigger: ATGGAGAGACGACCAGAGCCAGCTGGGAGAAAGCTG...GAACAGGGACCAAGTAGAGTCCACCTGTTGAGGCTGGCCATCACAAAGGAGATA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000238685.2
3UTR CAA 72 bp GAGCTCTGGCTTTCCCCGAATAAAGCCTCATGTGGTTaGCAACAAGCTCGGTCTGTCGTGAGTTCTTGGGTG +
Preference number: 4 (lower is better)
Translates to: ELWLSPNKASCG*QQARSVVSSWV
Trigger: CACCCAAGAACTCACGACAGACCGAGCTTGTTGCAAACCACATGAGGCTTTATTCGGGGAAAGCCAGAGCTC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000086882.8
ENSMUST00000238685.2
CDS-3UTR GCA 90 bp CCAGGGTTCTGTCCCTCACATAGAACCTCTGCAGAAAGGGGAAGATGCAGAGAAGCCAGGGATGTCACCTaGCATTCCATCTCTCCGTTA +
Preference number: 4 (lower is better)
Translates to: PGFCPSHRTSAERGRCREARDVT*HSISPL
Trigger: TAACGGAGAGATGGAATGGCAGGTGACATCCCTGGC...TTCTCTGCATCTTCCCCTTTCTGCAGAGGTTCTATGTGAGGGACAGAACCCTGG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000086882.8
ENSMUST00000238685.2
CDS-3UTR CCA 90 bp CAGGGTTCTGTCCCTCACATAGAACCTCTGCAGAAAGGGGAAGATGCAGAGAAGTCTCAAACACCGCGTTaGCATCCCAGAAGCACTGGT +
Preference number: 4 (lower is better)
Translates to: QGSVPHIEPLQKGEDAEKSQTPR*HPRSTG
Trigger: ACCAGTGCTTCTGGGATGCCAACGCGGTGTTTGAGA...CTTCTCTGCATCTTCCCCTTTCTGCAGAGGTTCTATGTGAGGGACAGAACCCTG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000086882.8
ENSMUST00000238685.2
CDS-3UTR CCA 90 bp CAGGGTTCTGTCCCTCACATAGAACCTCTGCAGAAAGGGGAAGATGCAGAGAAGATGTCCTCAGAACCTTaGGGAAGGCATCAGGCCACA +
Preference number: 4 (lower is better)
Translates to: QGSVPHIEPLQKGEDAEKMSSEP*GRHQAT
Trigger: TGTGGCCTGATGCCTTCCCCAAGGTTCTGAGGACAT...CTTCTCTGCATCTTCCCCTTTCTGCAGAGGTTCTATGTGAGGGACAGAACCCTG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000086882.8
ENSMUST00000097656.10
ENSMUST00000238685.2
CDS-3UTR TCA 90 bp ATAACAAAGGGCAGGATGAGGTCAGATCACCCAAAGGAGCTGAAAGATGTTGTTCGGGAGTCCCAGCTCTaGTCTGTGGCTCTTGGCTCA +
Preference number: 4 (lower is better)
Translates to: ITKGRMRSDHPKELKDVVRESQL*SVALGS
Trigger: TGAGCCAAGAGCCACAGATCAGAGCTGGGACTCCCG...AACAACATCTTTCAGCTCCTTTGGGTGATCTGACCTCATCCTGCCCTTTGTTAT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000238685.2
CDS-3UTR GCA 90 bp GAGAGTCTAACAAAGGAGGTGGCCCTGTTTGGCCTTAGGGTGACTAGTTTGCACATCTTCTGCAAGATCTaGAGCTTTCTCCCAGCTGGC +
Preference number: 4 (lower is better)
Translates to: ESLTKEVALFGLRVTSLHIFCKI*SFLPAG
Trigger: GCCAGCTGGGAGAAAGCTGCAGATCTTGCAGAAGAT...GTGCAAACTAGTCACCCTAAGGCCAAACAGGGCCACCTCCTTTGTTAGACTCTC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000238685.2
3UTR CAA 72 bp AAGGAGGTGGCCCTGTTTGGCCTTAGGGTGACTAGTTaGCACAGGGCAGGCATGGTTATCAGAGTGACATTT +
Preference number: 4 (lower is better)
Translates to: KEVALFGLRVTS*HRAGMVIRVTF
Trigger: AAATGTCACTCTGATAACCATGCCTGCCCTGTGCAAACTAGTCACCCTAAGGCCAAACAGGGCCACCTCCTT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000086882.8
ENSMUST00000238685.2
CDS-3UTR GCA 90 bp TATAATAACAGTTACCAATTCCATGTCAAGGTGCACTTGAAGCTGTATGTCTGTGGTGTGCGGCATAGGTaGAGGGGTGCCAGGCCCTCG +
Preference number: 4 (lower is better)
Translates to: YNNSYQFHVKVHLKLYVCGVRHR*RGARPS
Trigger: CGAGGGCCTGGCACCCCTGCACCTATGCCGCACACC...ACAGACATACAGCTTCAAGTGCACCTTGACATGGAATTGGTAACTGTTATTATA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000086882.8
ENSMUST00000238685.2
CDS-3UTR CCA 90 bp CTGGGATTCAATCCCAGGTCCTCTGCAAGAGCAGCCAGTGCTCTTCATTGCTGGACACAAAACACCCTCTaGCTCCAAAAGCAGGTAATT +
Preference number: 4 (lower is better)
Translates to: LGFNPRSSARAASALHCWTQNTL*LQKQVI
Trigger: AATTACCTGCTTTTGGAGCCAGAGGGTGTTTTGTGT...CCAGCAATGAAGAGCACTGGCTGCTCTTGCAGAGGACCTGGGATTGAATCCCAG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000086882.8
ENSMUST00000238685.2
CDS-3UTR CCA 90 bp ATAACAAAGGGCAGGATGAGGTCAGATCACCCAAAGGAGCTGAAAGATGTTGTTATGTCCTCAGAACCTTaGGGAAGGCATCAGGCCACA +
Preference number: 4 (lower is better)
Translates to: ITKGRMRSDHPKELKDVVMSSEP*GRHQAT
Trigger: TGTGGCCTGATGCCTTCCCCAAGGTTCTGAGGACAT...AACAACATCTTTCAGCTCCTTTGGGTGATCTGACCTCATCCTGCCCTTTGTTAT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000086882.8
ENSMUST00000238685.2
CDS-3UTR CCA 90 bp CAGGGTTCTGTCCCTCACATAGAACCTCTGCAGAAAGGGGAAGATGCAGAGAAGACACAAAACACCCTCTaGCTCCAAAAGCAGGTAATT +
Preference number: 4 (lower is better)
Translates to: QGSVPHIEPLQKGEDAEKTQNTL*LQKQVI
Trigger: AATTACCTGCTTTTGGAGCCAGAGGGTGTTTTGTGT...CTTCTCTGCATCTTCCCCTTTCTGCAGAGGTTCTATGTGAGGGACAGAACCCTG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000086882.8
ENSMUST00000097656.10
ENSMUST00000238685.2
CDS-3UTR CCA 90 bp ATAACAAAGGGCAGGATGAGGTCAGATCACCCAAAGGAGCTGAAAGATGTTGTTCCCAGCTCTGATCTGTaGCTCTTGGCTCATCTTCTG +
Preference number: 4 (lower is better)
Translates to: ITKGRMRSDHPKELKDVVPSSDL*LLAHLL
Trigger: CAGAAGATGAGCCAAGAGCCACAGATCAGAGCTGGG...AACAACATCTTTCAGCTCCTTTGGGTGATCTGACCTCATCCTGCCCTTTGTTAT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000238685.2
CDS-3UTR GCA 90 bp GAAAGGGGGCCACTCTGCTTATCTCTAGAAGGTGGTCATGAAGAGTTCTTGCTTTCTTGGCTCATCTTCTaGAAGATCTGCAGCTTTCTC +
Preference number: 4 (lower is better)
Translates to: ERGPLCLSLEGGHEEFLLSWLIF*KICSFL
Trigger: GAGAAAGCTGCAGATCTTGCAGAAGATGAGCCAAGA...AAGCAAGAACTCTTCATGACCACCTTCTAGAGATAAGCAGAGTGGCCCCCTTTC
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000238685.2
CDS-3UTR CCA 90 bp CAGCCTCAACAGGTGGACTCTACTTGGTCCCTGTTCTTATTTTCATTGTGGGCGACACAAAACACCCTCTaGCTCCAAAAGCAGGTAATT +
Preference number: 4 (lower is better)
Translates to: QPQQVDSTWSLFLFSLWATQNTL*LQKQVI
Trigger: AATTACCTGCTTTTGGAGCCAGAGGGTGTTTTGTGT...CGCCCACAATGAAAATAAGAACAGGGACCAAGTAGAGTCCACCTGTTGAGGCTG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000086882.8
ENSMUST00000238685.2
3UTR CAA 72 bp TCCCAGGTCCTCTGCAAGAGCAGCCAGTGCTCTTCATaGCTGGACAGCTATAATAACAGTTACCAATTCCAT +
Preference number: 4 (lower is better)
Translates to: SQVLCKSSQCSS*LDSYNNSYQFH
Trigger: ATGGAATTGGTAACTGTTATTATAGCTGTCCAGCAATGAAGAGCACTGGCTGCTCTTGCAGAGGACCTGGGA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000086882.8
ENSMUST00000238685.2
3UTR CAA 72 bp CTCTGCTTATCTCTAGAAGGTGGTCATGAAGAGTTCTaGCTTTCAAATTCAGGCTACTGGATGGCTCCCTGG +
Preference number: 4 (lower is better)
Translates to: LCLSLEGGHEEF*LSNSGYWMAPW
Trigger: CCAGGGAGCCATCCAGTAGCCTGAATTTGAAAGCAAGAACTCTTCATGACCACCTTCTAGAGATAAGCAGAG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000086882.8
ENSMUST00000238685.2
3UTR CAA 72 bp TATAATAACAGTTACCAATTCCATGTCAAGGTGCACTaGAAGCTGTATGTCTGTGTTTTTCCTGGTTACTTG +
Preference number: 4 (lower is better)
Translates to: YNNSYQFHVKVH*KLYVCVFPGYL
Trigger: CAAGTAACCAGGAAAAACACAGACATACAGCTTCAAGTGCACCTTGACATGGAATTGGTAACTGTTATTATA
38% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000086882.8
ENSMUST00000238685.2
CDS GCA 90 bp TGCACAGGCCGGGGCGCGCGTGGCCGCAGGCCTTGTGCAGCGGGCTaGGCTCGTCCTCGTCACGCGCGTCTGCCGCCGCGCCGCCGCGCA +
Preference number: 5 (lower is better)
Translates to: CTGRGARGRRPCAAG*ARPRHARLPPRRRA
Trigger: TGCGCGGCGGCGCGGCGGCAGACGCGCGTGACGAGGACGAGCGCAGCCCGCTGCACAAGGCCTGCGGCCACGCGCGCCCCGGCCTGTGCA
80% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000086882.8
ENSMUST00000238685.2
CDS GCA 90 bp CATAGTCGAGCGCGCCCGCGTCGGCGCCGTGCCGCAGCAGGAGCGTaGACAGGCCGGGGCGCGCGTGGCCGCAGGCCTTGTGCAGCGGGC +
Preference number: 5 (lower is better)
Translates to: HSRARPRRRRAAAGA*TGRGARGRRPCAAG
Trigger: GCCCGCTGCACAAGGCCTGCGGCCACGCGCGCCCCGGCCTGTGCACGCTCCTGCTGCGGCACGGCGCCGACGCGGGCGCGCTCGACTATG
79% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000086882.8
ENSMUST00000238685.2
CDS GCA 90 bp AGCAGGAGCGTGCACAGGCCGGGGCGCGCGTGGCCGCAGGCCTTGTaGAGCGGGCTGCGCTCGTCCTCGTCACGCGCGTCTGCCGCCGCG +
Preference number: 5 (lower is better)
Translates to: SRSVHRPGRAWPQAL*SGLRSSSSRASAAA
Trigger: CGCGGCGGCAGACGCGCGTGACGAGGACGAGCGCAGCCCGCTGCACAAGGCCTGCGGCCACGCGCGCCCCGGCCTGTGCACGCTCCTGCT
78% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000086882.8
ENSMUST00000238685.2
CDS CCA 90 bp TCGGCGCCGTGCCGCAGCAGGAGCGTGCACAGGCCGGGGCGCGCGTaGCCGCAGGCCTTGTGCAGCGGGCTGCGCTCGTCCTCGTCACGC +
Preference number: 5 (lower is better)
Translates to: SAPCRSRSVHRPGRA*PQALCSGLRSSSSR
Trigger: GCGTGACGAGGACGAGCGCAGCCCGCTGCACAAGGCCTGCGGCCACGCGCGCCCCGGCCTGTGCACGCTCCTGCTGCGGCACGGCGCCGA
78% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000086882.8
ENSMUST00000238685.2
CDS GCA 90 bp CAGGCAGCGCGCGTGCTCGTCGGGGCTCCGCGCCGCCGCTCCGCATaGTGCGCTAAGGGCCGTTTCGCCCCGGCCGTTCCTCGCGTCCAC +
Preference number: 5 (lower is better)
Translates to: QAARVLVGAPRRRSA*CAKGRFAPAVPRVH
Trigger: GTGGACGCGAGGAACGGCCGGGGCGAAACGGCCCTTAGCGCAGCATGCGGAGCGGCGGCGCGGAGCCCCGACGAGCACGCGCGCTGCCTG
77% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000086882.8
ENSMUST00000238685.2
CDS GCA 90 bp GCAGGCCTTGTGCAGCGGGCTGCGCTCGTCCTCGTCACGCGCGTCTaGCGCCGCGCCGCCGCGCAGAAGGAGCGCGCACAGGCGCAGGCA +
Preference number: 5 (lower is better)
Translates to: AGLVQRAALVLVTRV*RRAAAQKERAQAQA
Trigger: TGCCTGCGCCTGTGCGCGCTCCTTCTGCGCGGCGGCGCGGCGGCAGACGCGCGTGACGAGGACGAGCGCAGCCCGCTGCACAAGGCCTGC
77% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000086882.8
ENSMUST00000238685.2
CDS CCA 90 bp GCCGCCACGTGCAGCGGTGTGTCTCGGCCAGGGCCACCCTCCAGCTaGACTGTCGCGCCGTGCTCCAGCAGCTCCCGAGCGCACCCAAGC +
Preference number: 5 (lower is better)
Translates to: AATCSGVSRPGPPSS*TVAPCSSSSRAHPS
Trigger: GCTTGGGTGCGCTCGGGAGCTGCTGGAGCACGGCGCGACAGTCCAGCTGGAGGGTGGCCCTGGCCGAGACACACCGCTGCACGTGGCGGC
73% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000086882.8
ENSMUST00000238685.2
CDS CCA 90 bp TGGCCGTGGGCCGCAGCGATGCACAGCGGTGTGGTGAGCTCCCGCTaGTACTCCAGGGTCCAAAGGCCTAGCAGTACGCCCGTGGGCAGC +
Preference number: 5 (lower is better)
Translates to: WPWAAAMHSGVVSSR*YSRVQRPSSTPVGS
Trigger: GCTGCCCACGGGCGTACTGCTAGGCCTTTGGACCCTGGAGTACCAGCGGGAGCTCACCACACCGCTGTGCATCGCTGCGGCCCACGGCCA
69% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000154228.8
CDS TCA 90 bp CGCAGGACTCGTGGCCGTGGGCCGCAGCGATGCACAGCGGTGTGGTaGGCTCCCGCTGGTACTCCAGGGTCCAAAGGCCTGAGAGCCCAA +
Preference number: 5 (lower is better)
Translates to: RRTRGRGPQRCTAVW*APAGTPGSKGLRAQ
Trigger: TTGGGCTCTCAGGCCTTTGGACCCTGGAGTACCAGCGGGAGCTCACCACACCGCTGTGCATCGCTGCGGCCCACGGCCACGAGTCCTGCG
68% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000086882.8
ENSMUST00000238685.2
CDS TCA 90 bp GGGCACCACGACCTCCGGGACTGGCATTGGGATCAGCTTTGCGACTaGGCAGGTGTCGCACGCAGGACTCGTGGCCGTGGGCCGCAGCGA +
Preference number: 5 (lower is better)
Translates to: GHHDLRDWHWDQLCD*AGVARRTRGRGPQR
Trigger: TCGCTGCGGCCCACGGCCACGAGTCCTGCGTGCGACACCTGCTCAGTCGCAAAGCTGATCCCAATGCCAGTCCCGGAGGTCGTGGTGCCC
68% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000086882.8
ENSMUST00000154228.8
ENSMUST00000238685.2
CDS TCA 90 bp AGGCGGGTGTGCGGCATAGGTGCAGGGGTGCCAGGCCCTCGGAGTTaGGCAGATCTGGATCTGCTCCGTGCTGCAGCAGCAGTCGGGCGC +
Preference number: 5 (lower is better)
Translates to: RRVCGIGAGVPGPRS*ADLDLLRAAAAVGR
Trigger: GCGCCCGACTGCTGCTGCAGCACGGAGCAGATCCAGATCTGCTCAACTCCGAGGGCCTGGCACCCCTGCACCTATGCCGCACACCCGCCT
68% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000086882.8
ENSMUST00000154228.8
ENSMUST00000238685.2
CDS TCA 90 bp CGCAGGACTCGTGGCCGTGGGCCGCAGCGATGCACAGCGGTGTGGTaGGCTCCCGCTGGTACTCCAGGGTCCAAAGGCCTAGCAGTACGC +
Preference number: 5 (lower is better)
Translates to: RRTRGRGPQRCTAVW*APAGTPGSKGLAVR
Trigger: GCGTACTGCTAGGCCTTTGGACCCTGGAGTACCAGCGGGAGCTCACCACACCGCTGTGCATCGCTGCGGCCCACGGCCACGAGTCCTGCG
68% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000154228.8
CDS CCA 90 bp TGGCCGTGGGCCGCAGCGATGCACAGCGGTGTGGTGAGCTCCCGCTaGTACTCCAGGGTCCAAAGGCCTGAGAGCCCAAAGGTGGCCAGG +
Preference number: 5 (lower is better)
Translates to: WPWAAAMHSGVVSSR*YSRVQRPESPKVAR
Trigger: CCTGGCCACCTTTGGGCTCTCAGGCCTTTGGACCCTGGAGTACCAGCGGGAGCTCACCACACCGCTGTGCATCGCTGCGGCCCACGGCCA
68% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000086882.8
ENSMUST00000238685.2
CDS GCA 90 bp GGTGCCAGGCCCTCGGAGTTGAGCAGATCTGGATCTGCTCCGTGCTaGAGCAGCAGTCGGGCGCAGGCGGTATGGTTCCCGAGACAGGCC +
Preference number: 5 (lower is better)
Translates to: GARPSELSRSGSAPC*SSSRAQAVWFPRQA
Trigger: GGCCTGTCTCGGGAACCATACCGCCTGCGCCCGACTGCTGCTGCAGCACGGAGCAGATCCAGATCTGCTCAACTCCGAGGGCCTGGCACC
67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000086882.8
ENSMUST00000154228.8
ENSMUST00000238685.2
CDS CCA 90 bp TCAGCTTTGCGACTGAGCAGGTGTCGCACGCAGGACTCGTGGCCGTaGGCCGCAGCGATGCACAGCGGTGTGGTGAGCTCCCGCTGGTAC +
Preference number: 5 (lower is better)
Translates to: SALRLSRCRTQDSWP*AAAMHSGVVSSRWY
Trigger: GTACCAGCGGGAGCTCACCACACCGCTGTGCATCGCTGCGGCCCACGGCCACGAGTCCTGCGTGCGACACCTGCTCAGTCGCAAAGCTGA
67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000086882.8
ENSMUST00000154228.8
ENSMUST00000238685.2
CDS CCA 90 bp TTGGGATCAGCTTTGCGACTGAGCAGGTGTCGCACGCAGGACTCGTaGCCGTGGGCCGCAGCGATGCACAGCGGTGTGGTGAGCTCCCGC +
Preference number: 5 (lower is better)
Translates to: LGSALRLSRCRTQDS*PWAAAMHSGVVSSR
Trigger: GCGGGAGCTCACCACACCGCTGTGCATCGCTGCGGCCCACGGCCACGAGTCCTGCGTGCGACACCTGCTCAGTCGCAAAGCTGATCCCAA
67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000086882.8
ENSMUST00000154228.8
ENSMUST00000238685.2
CDS TCA 90 bp CTCAGAACCTTGGGGAAGGCATCAGGCCACACGGAGCGGGATCCGTaGTTTAGTAGCACCTGGACCGTGCGCTGCGGCGCTGTCGGGGGC +
Preference number: 5 (lower is better)
Translates to: LRTLGKASGHTERDP*FSSTWTVRCGAVGG
Trigger: GCCCCCGACAGCGCCGCAGCGCACGGTCCAGGTGCTACTAAATCACGGATCCCGCTCCGTGTGGCCTGATGCCTTCCCCAAGGTTCTGAG
66% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000086882.8
ENSMUST00000238685.2
CDS GCA 90 bp AGGGGTGCCAGGCCCTCGGAGTTGAGCAGATCTGGATCTGCTCCGTaGTGCAGCAGCAGTCGGGCGCAGGCGGTATGGTTCCCGAGACAG +
Preference number: 5 (lower is better)
Translates to: RGARPSELSRSGSAP*CSSSRAQAVWFPRQ
Trigger: CTGTCTCGGGAACCATACCGCCTGCGCCCGACTGCTGCTGCAGCACGGAGCAGATCCAGATCTGCTCAACTCCGAGGGCCTGGCACCCCT
66% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000086882.8
ENSMUST00000154228.8
ENSMUST00000238685.2
CDS CCA 90 bp TCTGGATCTGCTCCGTGCTGCAGCAGCAGTCGGGCGCAGGCGGTATaGTTCCCGAGACAGGCCTCATGTAGGGCACCACGACCTCCGGGA +
Preference number: 5 (lower is better)
Translates to: SGSAPCCSSSRAQAV*FPRQASCRAPRPPG
Trigger: TCCCGGAGGTCGTGGTGCCCTACATGAGGCCTGTCTCGGGAACCATACCGCCTGCGCCCGACTGCTGCTGCAGCACGGAGCAGATCCAGA
66% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000086882.8
ENSMUST00000154228.8
ENSMUST00000238685.2
CDS CCA 90 bp ACCGCGTTGGCATCCCAGAAGCACTGGTCCATGAGGAGCCGGATGTaGTCCAGGTCTCCTAGCAGTACGCCCGTGGGCAGCTCGGCTGAG +
Preference number: 5 (lower is better)
Translates to: TALASQKHWSMRSRM*SRSPSSTPVGSSAE
Trigger: CTCAGCCGAGCTGCCCACGGGCGTACTGCTAGGAGACCTGGACCACATCCGGCTCCTCATGGACCAGTGCTTCTGGGATGCCAACGCGGT
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000086882.8
CDS CCA 90 bp TTTAGTAGCACCTGGACCGTGCGCAGCGGTGTGGTGAGCTCCCGCTaGTACTCCAGGGTCCAAAGGCCTAGCAGTACGCCCGTGGGCAGC +
Preference number: 5 (lower is better)
Translates to: FSSTWTVRSGVVSSR*YSRVQRPSSTPVGS
Trigger: GCTGCCCACGGGCGTACTGCTAGGCCTTTGGACCCTGGAGTACCAGCGGGAGCTCACCACACCGCTGCGCACGGTCCAGGTGCTACTAAA
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000097656.10
CDS-3UTR CAA 90 bp CTGGGATTCAATCCCAGGTCCTCTGCAAGAGCAGCCAGTGCTCTTCATTGCTGGGCGTGGCCGCAGGCCTaGTGCAGCGGGCTGCGCTCG +
Preference number: 5 (lower is better)
Translates to: LGFNPRSSARAASALHCWAWPQA*CSGLRS
Trigger: CGAGCGCAGCCCGCTGCACAAGGCCTGCGGCCACGC...CCAGCAATGAAGAGCACTGGCTGCTCTTGCAGAGGACCTGGGATTGAATCCCAG
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000086882.8
ENSMUST00000238685.2
CDS GCA 90 bp CTGGTCCATGAGGAGCCGGATGTGGTCCAGGTCTCCTGCCAGCAGTaGAGCGTGGAACGCAAGCTCGGGAGTCCCAGCTCTGATCTGTGG +
Preference number: 5 (lower is better)
Translates to: LVHEEPDVVQVSCQQ*SVERKLGSPSSDLW
Trigger: CCACAGATCAGAGCTGGGACTCCCGAGCTTGCGTTCCACGCTGCACTGCTGGCAGGAGACCTGGACCACATCCGGCTCCTCATGGACCAG
63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000238685.2
CDS CCA 90 bp ACCGCGTTGGCATCCCAGAAGCACTGGTCCATGAGGAGCCGGATGTaGTCCAGGTCTCCTGCCAGCAGTGCAGCGTGGAACGCAAGCTCG +
Preference number: 5 (lower is better)
Translates to: TALASQKHWSMRSRM*SRSPASSAAWNASS
Trigger: CGAGCTTGCGTTCCACGCTGCACTGCTGGCAGGAGACCTGGACCACATCCGGCTCCTCATGGACCAGTGCTTCTGGGATGCCAACGCGGT
63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000238685.2
CDS-3UTR CAA 90 bp TTGGCTCCAGGAGGGATGGGAGCCTCTCCTGTAAGTCCAAGAGTCAATAACCCAGCGTGGCCGCAGGCCTaGTGCAGCGGGCTGCGCTCG +
Preference number: 5 (lower is better)
Translates to: LAPGGMGASPVSPRVNNPAWPQA*CSGLRS
Trigger: CGAGCGCAGCCCGCTGCACAAGGCCTGCGGCCACGC...TGGGTTATTGACTCTTGGACTTACAGGAGAGGCTCCCATCCCTCCTGGAGCCAA
63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000086882.8
ENSMUST00000238685.2
CDS TCA 90 bp GGGATCCGTGATTTAGTAGCACCTGGACCGTGCGCAGCGGTGTGGTaGGCTCCCGCTGGTACTCCAGGGTCCAAAGGCCTAGCAGTACGC +
Preference number: 5 (lower is better)
Translates to: GIRDLVAPGPCAAVW*APAGTPGSKGLAVR
Trigger: GCGTACTGCTAGGCCTTTGGACCCTGGAGTACCAGCGGGAGCTCACCACACCGCTGCGCACGGTCCAGGTGCTACTAAATCACGGATCCC
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000097656.10
CDS TCA 90 bp CTCAGAACCTTGGGGAAGGCATCAGGCCACACGGAGCGGGATCCGTaGTTTAGTAGCACCTGGACCGTGCGCAGCGGTGTGGTGAGCTCC +
Preference number: 5 (lower is better)
Translates to: LRTLGKASGHTERDP*FSSTWTVRSGVVSS
Trigger: GGAGCTCACCACACCGCTGCGCACGGTCCAGGTGCTACTAAATCACGGATCCCGCTCCGTGTGGCCTGATGCCTTCCCCAAGGTTCTGAG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000097656.10
CDS CCA 90 bp GCGTGGAACGCAAGCTCGGGAGTCCCAGCTCTGATCTGTGGCTCTTaGCTCATCTTCTGCAAGATCTGCAGCTTTCTCCCAGCTGGCTCT +
Preference number: 5 (lower is better)
Translates to: AWNASSGVPALICGS*LIFCKICSFLPAGS
Trigger: AGAGCCAGCTGGGAGAAAGCTGCAGATCTTGCAGAAGATGAGCCAAGAGCCACAGATCAGAGCTGGGACTCCCGAGCTTGCGTTCCACGC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000238685.2
CDS CCA 90 bp TCTCCGTTACTGATCTCAAACACCGCGTTGGCATCCCAGAAGCACTaGTCCATGAGGAGCCGGATGTGGTCCAGGTCTCCTGCCAGCAGT +
Preference number: 5 (lower is better)
Translates to: SPLLISNTALASQKH*SMRSRMWSRSPASS
Trigger: ACTGCTGGCAGGAGACCTGGACCACATCCGGCTCCTCATGGACCAGTGCTTCTGGGATGCCAACGCGGTGTTTGAGATCAGTAACGGAGA
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000238685.2
CDS-3UTR CAA 90 bp TACCATCCTCCGGTGTCCTGTGAGTGCTGGGCTCTCCTGTGTTTGCAAGCACAACCTCCGGGACTGGCATaGGGATCAGCTTTGCGACTG +
Preference number: 5 (lower is better)
Translates to: YHPPVSCECWALLCLQAQPPGLA*GSALRL
Trigger: CAGTCGCAAAGCTGATCCCAATGCCAGTCCCGGAGG...TTGTGCTTGCAAACACAGGAGAGCCCAGCACTCACAGGACACCGGAGGATGGTA
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000086882.8
ENSMUST00000238685.2
CDS-3UTR CAA 90 bp CCAGGGTTCTGTCCCTCACATAGAACCTCTGCAGAAAGGGGAAGATGCAGAGAAGAAGCCCAGGTAGAGTaGCGCGTGCTCGTCCAGGCC +
Preference number: 5 (lower is better)
Translates to: PGFCPSHRTSAERGRCREEAQVE*RVLVQA
Trigger: GGCCTGGACGAGCACGCGCAACTCTACCTGGGCTTC...TTCTCTGCATCTTCCCCTTTCTGCAGAGGTTCTATGTGAGGGACAGAACCCTGG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000086882.8
ENSMUST00000238685.2
CDS-3UTR CAA 90 bp CCAGGTAAGTGCTGGGATTCAATCCCAGGTCCTCTGCAAGAGCAGCCAGTGCTCCATGTCCTCAGAACCTaGGGGAAGGCATCAGGCCAC +
Preference number: 5 (lower is better)
Translates to: PGKCWDSIPGPLQEQPVLHVLRT*GKASGH
Trigger: GTGGCCTGATGCCTTCCCCAAGGTTCTGAGGACATG...GAGCACTGGCTGCTCTTGCAGAGGACCTGGGATTGAATCCCAGCACTTACCTGG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000086882.8
ENSMUST00000238685.2
CDS GCA 90 bp AGGGTCCAAAGGCCTGAGAGCCCAAAGGTGGCCAGGGATGTCACCTaGCATTCCATCTCTCCGTTACTGATCTCAAACACCGCGTTGGCA +
Preference number: 5 (lower is better)
Translates to: RVQRPESPKVARDVT*HSISPLLISNTALA
Trigger: TGCCAACGCGGTGTTTGAGATCAGTAACGGAGAGATGGAATGGCAGGTGACATCCCTGGCCACCTTTGGGCTCTCAGGCCTTTGGACCCT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000086882.8
ENSMUST00000238685.2
CDS CCA 90 bp TCTCCGTTACTGATCTCAAACACCGCGTTGGCATCCCAGAAGCACTaGTCCATGAGGAGCCGGATGTGGTCCAGGTCTCCTAGCAGTACG +
Preference number: 5 (lower is better)
Translates to: SPLLISNTALASQKH*SMRSRMWSRSPSST
Trigger: CGTACTGCTAGGAGACCTGGACCACATCCGGCTCCTCATGGACCAGTGCTTCTGGGATGCCAACGCGGTGTTTGAGATCAGTAACGGAGA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000086882.8
CDS-3UTR CAA 90 bp GTGAACGCTCTCCTTGCCGAAGAGTTTTCGGATAGTACAGCGGCAAAGGTGCTGCCTCCGGGACTGGCATaGGGATCAGCTTTGCGACTG +
Preference number: 5 (lower is better)
Translates to: VNALLAEEFSDSTAAKVLPPGLA*GSALRL
Trigger: CAGTCGCAAAGCTGATCCCAATGCCAGTCCCGGAGG...CAGCACCTTTGCCGCTGTACTATCCGAAAACTCTTCGGCAAGGAGAGCGTTCAC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000154228.8
CDS-3UTR CAA 90 bp CAGCCTCAACAGGTGGACTCTACTTGGTCCCTGTTCTTATTTTCATTGTGGGCGGAAGCCCAGGTAGAGTaGCGCGTGCTCGTCCAGGCC +
Preference number: 5 (lower is better)
Translates to: QPQQVDSTWSLFLFSLWAEAQVE*RVLVQA
Trigger: GGCCTGGACGAGCACGCGCAACTCTACCTGGGCTTC...CGCCCACAATGAAAATAAGAACAGGGACCAAGTAGAGTCCACCTGTTGAGGCTG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000086882.8
ENSMUST00000238685.2
CDS-3UTR CAA 90 bp TTGGTCAGGTCGGATGGGATGGGCAAGGAAGGACAAACAGGCCTTGGGTCTATGATCTCAAACACCGCGTaGGCATCCCAGAAGCACTGG +
Preference number: 5 (lower is better)
Translates to: LVRSDGMGKEGQTGLGSMISNTA*ASQKHW
Trigger: CCAGTGCTTCTGGGATGCCAACGCGGTGTTTGAGAT...CATAGACCCAAGGCCTGTTTGTCCTTCCTTGCCCATCCCATCCGACCTGACCAA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000086882.8
ENSMUST00000238685.2
CDS-3UTR CAA 90 bp CAGCCTCAACAGGTGGACTCTACTTGGTCCCTGTTCTTATTTTCATTGTGGGCGGCCAGGCCCTCGGAGTaGAGCAGATCTGGATCTGCT +
Preference number: 5 (lower is better)
Translates to: QPQQVDSTWSLFLFSLWAARPSE*SRSGSA
Trigger: AGCAGATCCAGATCTGCTCAACTCCGAGGGCCTGGC...CGCCCACAATGAAAATAAGAACAGGGACCAAGTAGAGTCCACCTGTTGAGGCTG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000086882.8
ENSMUST00000238685.2
CDS-3UTR CAA 90 bp CAGGGTTCTGTCCCTCACATAGAACCTCTGCAGAAAGGGGAAGATGCAGAGAAGCATGTCCTCAGAACCTaGGGGAAGGCATCAGGCCAC +
Preference number: 5 (lower is better)
Translates to: QGSVPHIEPLQKGEDAEKHVLRT*GKASGH
Trigger: GTGGCCTGATGCCTTCCCCAAGGTTCTGAGGACATG...CTTCTCTGCATCTTCCCCTTTCTGCAGAGGTTCTATGTGAGGGACAGAACCCTG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000086882.8
ENSMUST00000097656.10
ENSMUST00000238685.2
CDS-3UTR CAA 90 bp CCAGGGTTCTGTCCCTCACATAGAACCTCTGCAGAAAGGGGAAGATGCAGAGAACATGTCCTCAGAACCTaGGGGAAGGCATCAGGCCAC +
Preference number: 5 (lower is better)
Translates to: PGFCPSHRTSAERGRCREHVLRT*GKASGH
Trigger: GTGGCCTGATGCCTTCCCCAAGGTTCTGAGGACATG...TTCTCTGCATCTTCCCCTTTCTGCAGAGGTTCTATGTGAGGGACAGAACCCTGG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000086882.8
ENSMUST00000097656.10
ENSMUST00000238685.2
CDS-3UTR CAA 90 bp GAGAGTCTAACAAAGGAGGTGGCCCTGTTTGGCCTTAGGGTGACTAGTTTGCACATCTCAAACACCGCGTaGGCATCCCAGAAGCACTGG +
Preference number: 5 (lower is better)
Translates to: ESLTKEVALFGLRVTSLHISNTA*ASQKHW
Trigger: CCAGTGCTTCTGGGATGCCAACGCGGTGTTTGAGAT...GTGCAAACTAGTCACCCTAAGGCCAAACAGGGCCACCTCCTTTGTTAGACTCTC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000086882.8
ENSMUST00000238685.2
CDS-3UTR CAA 90 bp GAGAGTCTAACAAAGGAGGTGGCCCTGTTTGGCCTTAGGGTGACTAGTTTGCACTCTGATCTGTGGCTCTaGGCTCATCTTCTGCAAGAT +
Preference number: 5 (lower is better)
Translates to: ESLTKEVALFGLRVTSLHSDLWL*AHLLQD
Trigger: ATCTTGCAGAAGATGAGCCAAGAGCCACAGATCAGA...GTGCAAACTAGTCACCCTAAGGCCAAACAGGGCCACCTCCTTTGTTAGACTCTC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000238685.2
CDS CAA 90 bp CGCAGCAGGAGCGTGCACAGGCCGGGGCGCGCGTGGCCGCAGGCCTaGTGCAGCGGGCTGCGCTCGTCCTCGTCACGCGCGTCTGCCGCC +
Preference number: 6 (lower is better)
Translates to: RSRSVHRPGRAWPQA*CSGLRSSSSRASAA
Trigger: GGCGGCAGACGCGCGTGACGAGGACGAGCGCAGCCCGCTGCACAAGGCCTGCGGCCACGCGCGCCCCGGCCTGTGCACGCTCCTGCTGCG
78% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000086882.8
ENSMUST00000238685.2
CDS GCA 72 bp GTGCAGCGGGCTGCGCTCGTCCTCGTCACGCGCGTCTaGCGCCGCGCCGCCGCGCAGAAGGAGCGCGCACAG +
Preference number: 6 (lower is better)
Translates to: VQRAALVLVTRV*RRAAAQKERAQ
Trigger: CTGTGCGCGCTCCTTCTGCGCGGCGGCGCGGCGGCAGACGCGCGTGACGAGGACGAGCGCAGCCCGCTGCAC
78% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000086882.8
ENSMUST00000238685.2
CDS CCA 72 bp TGCCGCAGCAGGAGCGTGCACAGGCCGGGGCGCGCGTaGCCGCAGGCCTTGTGCAGCGGGCTGCGCTCGTCC +
Preference number: 6 (lower is better)
Translates to: CRSRSVHRPGRA*PQALCSGLRSS
Trigger: GGACGAGCGCAGCCCGCTGCACAAGGCCTGCGGCCACGCGCGCCCCGGCCTGTGCACGCTCCTGCTGCGGCA
78% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000086882.8
ENSMUST00000238685.2
CDS GCA 72 bp TGCGCGTGCTCGTCCAGGCCGCGCTGGGCCGCCACGTaGAGCGGTGTGTCTCGGCCAGGGCCACCCTCCAGC +
Preference number: 6 (lower is better)
Translates to: CACSSRPRWAAT*SGVSRPGPPSS
Trigger: GCTGGAGGGTGGCCCTGGCCGAGACACACCGCTGCACGTGGCGGCCCAGCGCGGCCTGGACGAGCACGCGCA
76% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000086882.8
ENSMUST00000238685.2
CDS GCA 72 bp CGCGTGCTCGTCGGGGCTCCGCGCCGCCGCTCCGCATaGTGCGCTAAGGGCCGTTTCGCCCCGGCCGTTCCT +
Preference number: 6 (lower is better)
Translates to: RVLVGAPRRRSA*CAKGRFAPAVP
Trigger: AGGAACGGCCGGGGCGAAACGGCCCTTAGCGCAGCATGCGGAGCGGCGGCGCGGAGCCCCGACGAGCACGCG
76% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000086882.8
ENSMUST00000238685.2
CDS GCA 72 bp GTGCACAGGCCGGGGCGCGCGTGGCCGCAGGCCTTGTaGAGCGGGCTGCGCTCGTCCTCGTCACGCGCGTCT +
Preference number: 6 (lower is better)
Translates to: VHRPGRAWPQAL*SGLRSSSSRAS
Trigger: AGACGCGCGTGACGAGGACGAGCGCAGCCCGCTGCACAAGGCCTGCGGCCACGCGCGCCCCGGCCTGTGCAC
76% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000086882.8
ENSMUST00000238685.2
CDS CAA 72 bp CCTCGCGTCCACTCGCGCGCCGAAGCCCAGGTAGAGTaGCGCGTGCTCGTCCAGGCCGCGCTGGGCCGCCAC +
Preference number: 6 (lower is better)
Translates to: PRVHSRAEAQVE*RVLVQAALGRH
Trigger: GTGGCGGCCCAGCGCGGCCTGGACGAGCACGCGCAACTCTACCTGGGCTTCGGCGCGCGAGTGGACGCGAGG
75% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000086882.8
ENSMUST00000238685.2
CDS GCA 72 bp CCAGCAGCTCCCGAGCGCACCCAAGCGAGGCGGGTGTaGGGCATAGGTGCAGGGGTGCCAGGCCCTCGGAGT +
Preference number: 6 (lower is better)
Translates to: PAAPERTQARRV*GIGAGVPGPRS
Trigger: ACTCCGAGGGCCTGGCACCCCTGCACCTATGCCGCACACCCGCCTCGCTTGGGTGCGCTCGGGAGCTGCTGG
72% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000086882.8
ENSMUST00000238685.2
CDS GCA 72 bp CGGAGCGGGATCCGTGATTTAGTAGCACCTGGACCGTaGGCTGCGGCGCTGTCGGGGGCGCGCACGTGGCCG +
Preference number: 6 (lower is better)
Translates to: RSGIRDLVAPGP*AAALSGARTWP
Trigger: CGGCCACGTGCGCGCCCCCGACAGCGCCGCAGCGCACGGTCCAGGTGCTACTAAATCACGGATCCCGCTCCG
72% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000086882.8
ENSMUST00000238685.2
CDS CCA 72 bp TGCAGCGGTGTGTCTCGGCCAGGGCCACCCTCCAGCTaGACTGTCGCGCCGTGCTCCAGCAGCTCCCGAGCG +
Preference number: 6 (lower is better)
Translates to: CSGVSRPGPPSS*TVAPCSSSSRA
Trigger: CGCTCGGGAGCTGCTGGAGCACGGCGCGACAGTCCAGCTGGAGGGTGGCCCTGGCCGAGACACACCGCTGCA
72% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000086882.8
ENSMUST00000238685.2
CDS TCA 72 bp CGTGGCCGTGGGCCGCAGCGATGCACAGCGGTGTGGTaGGCTCCCGCTGGTACTCCAGGGTCCAAAGGCCTG +
Preference number: 6 (lower is better)
Translates to: RGRGPQRCTAVW*APAGTPGSKGL
Trigger: CAGGCCTTTGGACCCTGGAGTACCAGCGGGAGCTCACCACACCGCTGTGCATCGCTGCGGCCCACGGCCACG
69% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000086882.8
ENSMUST00000238685.2
CDS CCA 72 bp CGACTGAGCAGGTGTCGCACGCAGGACTCGTGGCCGTaGGCCGCAGCGATGCACAGCGGTGTGGTGAGCTCC +
Preference number: 6 (lower is better)
Translates to: RLSRCRTQDSWP*AAAMHSGVVSS
Trigger: GGAGCTCACCACACCGCTGTGCATCGCTGCGGCCCACGGCCACGAGTCCTGCGTGCGACACCTGCTCAGTCG
69% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000086882.8
ENSMUST00000154228.8
ENSMUST00000238685.2
CDS TCA 72 bp CGTGGCCGTGGGCCGCAGCGATGCACAGCGGTGTGGTaGGCTCCCGCTGGTACTCCAGGGTCCAAAGGCCTA +
Preference number: 6 (lower is better)
Translates to: RGRGPQRCTAVW*APAGTPGSKGL
Trigger: TAGGCCTTTGGACCCTGGAGTACCAGCGGGAGCTCACCACACCGCTGTGCATCGCTGCGGCCCACGGCCACG
68% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000154228.8
CDS GCA 72 bp GGGTGCCAGGCCCTCGGAGTTGAGCAGATCTGGATCTaGTCCGTGCTGCAGCAGCAGTCGGGCGCAGGCGGT +
Preference number: 6 (lower is better)
Translates to: GCQALGVEQIWI*SVLQQQSGAGG
Trigger: ACCGCCTGCGCCCGACTGCTGCTGCAGCACGGAGCAGATCCAGATCTGCTCAACTCCGAGGGCCTGGCACCC
68% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000086882.8
ENSMUST00000154228.8
ENSMUST00000238685.2
CDS CCA 72 bp GCTTTGCGACTGAGCAGGTGTCGCACGCAGGACTCGTaGCCGTGGGCCGCAGCGATGCACAGCGGTGTGGTG +
Preference number: 6 (lower is better)
Translates to: ALRLSRCRTQDS*PWAAAMHSGVV
Trigger: CACCACACCGCTGTGCATCGCTGCGGCCCACGGCCACGAGTCCTGCGTGCGACACCTGCTCAGTCGCAAAGC
68% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000086882.8
ENSMUST00000154228.8
ENSMUST00000238685.2
CDS CCA 72 bp GCTCCGTGCTGCAGCAGCAGTCGGGCGCAGGCGGTATaGTTCCCGAGACAGGCCTCATGTAGGGCACCACGA +
Preference number: 6 (lower is better)
Translates to: APCCSSSRAQAV*FPRQASCRAPR
Trigger: TCGTGGTGCCCTACATGAGGCCTGTCTCGGGAACCATACCGCCTGCGCCCGACTGCTGCTGCAGCACGGAGC
67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000086882.8
ENSMUST00000154228.8
ENSMUST00000238685.2
CDS CCA 72 bp GTGCAGGGGTGCCAGGCCCTCGGAGTTGAGCAGATCTaGATCTGCTCCGTGCTGCAGCAGCAGTCGGGCGCA +
Preference number: 6 (lower is better)
Translates to: VQGCQALGVEQI*ICSVLQQQSGA
Trigger: TGCGCCCGACTGCTGCTGCAGCACGGAGCAGATCCAGATCTGCTCAACTCCGAGGGCCTGGCACCCCTGCAC
67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000086882.8
ENSMUST00000154228.8
ENSMUST00000238685.2
CDS CCA 72 bp ACCTGGACCGTGCGCAGCGGTGTGGTGAGCTCCCGCTaGTACTCCAGGGTCCAAAGGCCTAGCAGTACGCCC +
Preference number: 6 (lower is better)
Translates to: TWTVRSGVVSSR*YSRVQRPSSTP
Trigger: GGGCGTACTGCTAGGCCTTTGGACCCTGGAGTACCAGCGGGAGCTCACCACACCGCTGCGCACGGTCCAGGT
67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000097656.10
CDS CCA 72 bp CACCTGGACCGTGCGAGCGGTGTGGTGAGCTCCCGCTaGTACTCCAGGGTCCAAAGGCCTAGCAGTACGCCC +
Preference number: 6 (lower is better)
Translates to: HLDRASGVVSSR*YSRVQRPSSTP
Trigger: GGGCGTACTGCTAGGCCTTTGGACCCTGGAGTACCAGCGGGAGCTCACCACACCGCTCGCACGGTCCAGGTG
67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000151330.2
CDS CCA 72 bp GCCGCAGCGATGCACAGCGGTGTGGTGAGCTCCCGCTaGTACTCCAGGGTCCAAAGGCCTAGCAGTACGCCC +
Preference number: 6 (lower is better)
Translates to: AAAMHSGVVSSR*YSRVQRPSSTP
Trigger: GGGCGTACTGCTAGGCCTTTGGACCCTGGAGTACCAGCGGGAGCTCACCACACCGCTGTGCATCGCTGCGGC
67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000154228.8
CDS TCA 72 bp GACCTCCGGGACTGGCATTGGGATCAGCTTTGCGACTaGGCAGGTGTCGCACGCAGGACTCGTGGCCGTGGG +
Preference number: 6 (lower is better)
Translates to: DLRDWHWDQLCD*AGVARRTRGRG
Trigger: CCCACGGCCACGAGTCCTGCGTGCGACACCTGCTCAGTCGCAAAGCTGATCCCAATGCCAGTCCCGGAGGTC
65% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000086882.8
ENSMUST00000154228.8
ENSMUST00000238685.2
CDS CCA 72 bp GCCGCAGCGATGCACAGCGGTGTGGTGAGCTCCCGCTaGTACTCCAGGGTCCAAAGGCCTGAGAGCCCAAAG +
Preference number: 6 (lower is better)
Translates to: AAAMHSGVVSSR*YSRVQRPESPK
Trigger: CTTTGGGCTCTCAGGCCTTTGGACCCTGGAGTACCAGCGGGAGCTCACCACACCGCTGTGCATCGCTGCGGC
65% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000086882.8
ENSMUST00000238685.2
CDS CAA 90 bp TCATGTAGGGCACCACGACCTCCGGGACTGGCATTGGGATCAGCTTaGCGACTGAGCAGGTGTCGCACGCAGGACTCGTGGCCGTGGGCC +
Preference number: 6 (lower is better)
Translates to: SCRAPRPPGLALGSA*RLSRCRTQDSWPWA
Trigger: GGCCCACGGCCACGAGTCCTGCGTGCGACACCTGCTCAGTCGCAAAGCTGATCCCAATGCCAGTCCCGGAGGTCGTGGTGCCCTACATGA
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000086882.8
ENSMUST00000154228.8
ENSMUST00000238685.2
CDS TCA 72 bp TTGGGGAAGGCATCAGGCCACACGGAGCGGGATCCGTaGTTTAGTAGCACCTGGACCGTGCGCTGCGGCGCT +
Preference number: 6 (lower is better)
Translates to: LGKASGHTERDP*FSSTWTVRCGA
Trigger: AGCGCCGCAGCGCACGGTCCAGGTGCTACTAAATCACGGATCCCGCTCCGTGTGGCCTGATGCCTTCCCCAA
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000086882.8
ENSMUST00000238685.2
CDS GCA 72 bp AGGCCCTCGGAGTTGAGCAGATCTGGATCTGCTCCGTaGTGCAGCAGCAGTCGGGCGCAGGCGGTATGGTTC +
Preference number: 6 (lower is better)
Translates to: RPSELSRSGSAP*CSSSRAQAVWF
Trigger: GAACCATACCGCCTGCGCCCGACTGCTGCTGCAGCACGGAGCAGATCCAGATCTGCTCAACTCCGAGGGCCT
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000086882.8
ENSMUST00000154228.8
ENSMUST00000238685.2
CDS CCA 72 bp GCCGGATGTGGTCCAGGTCTCCTAGCAGTACGCCCGTaGGCAGCTCGGCTGAGGGCTCCTTCATCCAGTCAT +
Preference number: 6 (lower is better)
Translates to: AGCGPGLLAVRP*AARLRAPSSSH
Trigger: ATGACTGGATGAAGGAGCCCTCAGCCGAGCTGCCCACGGGCGTACTGCTAGGAGACCTGGACCACATCCGGC
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000086882.8
CDS CCA 72 bp GCATCCCAGAAGCACTGGTCCATGAGGAGCCGGATGTaGTCCAGGTCTCCTAGCAGTACGCCCGTGGGCAGC +
Preference number: 6 (lower is better)
Translates to: ASQKHWSMRSRM*SRSPSSTPVGS
Trigger: GCTGCCCACGGGCGTACTGCTAGGAGACCTGGACCACATCCGGCTCCTCATGGACCAGTGCTTCTGGGATGC
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000086882.8
CDS CAA 72 bp GCACCACGACCTCCGGGACTGGCATTGGGATCAGCTTaGCGACTGAGCAGGTGTCGCACGCAGGACTCGTGG +
Preference number: 6 (lower is better)
Translates to: APRPPGLALGSA*RLSRCRTQDSW
Trigger: CCACGAGTCCTGCGTGCGACACCTGCTCAGTCGCAAAGCTGATCCCAATGCCAGTCCCGGAGGTCGTGGTGC
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000086882.8
ENSMUST00000154228.8
ENSMUST00000238685.2
CDS TCA 72 bp TTGGGGAAGGCATCAGGCCACACGGAGCGGGATCCGTaGTTTAGTAGCACCTGGACCGTGCGCAGCGGTGTG +
Preference number: 6 (lower is better)
Translates to: LGKASGHTERDP*FSSTWTVRSGV
Trigger: CACACCGCTGCGCACGGTCCAGGTGCTACTAAATCACGGATCCCGCTCCGTGTGGCCTGATGCCTTCCCCAA
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000097656.10
CDS CCA 72 bp GGTACTCCAGGGTCCAAAGGCCTAGCAGTACGCCCGTaGGCAGCTCGGCTGAGGGCTCCTTCATCCAGTCAT +
Preference number: 6 (lower is better)
Translates to: GTPGSKGLAVRP*AARLRAPSSSH
Trigger: ATGACTGGATGAAGGAGCCCTCAGCCGAGCTGCCCACGGGCGTACTGCTAGGCCTTTGGACCCTGGAGTACC
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000097656.10
ENSMUST00000151330.2
ENSMUST00000154228.8
CDS CCA 72 bp GCATCCCAGAAGCACTGGTCCATGAGGAGCCGGATGTaGTCCAGGTCTCCTGCCAGCAGTGCAGCGTGGAAC +
Preference number: 6 (lower is better)
Translates to: ASQKHWSMRSRM*SRSPASSAAWN
Trigger: GTTCCACGCTGCACTGCTGGCAGGAGACCTGGACCACATCCGGCTCCTCATGGACCAGTGCTTCTGGGATGC
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000238685.2
CDS CAA 72 bp GCCTCATGTAGGGCACCACGACCTCCGGGACTGGCATaGGGATCAGCTTTGCGACTGAGCAGGTGTCGCACG +
Preference number: 6 (lower is better)
Translates to: ASCRAPRPPGLA*GSALRLSRCRT
Trigger: CGTGCGACACCTGCTCAGTCGCAAAGCTGATCCCAATGCCAGTCCCGGAGGTCGTGGTGCCCTACATGAGGC
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000086882.8
ENSMUST00000154228.8
ENSMUST00000238685.2
CDS TCA 72 bp GATTTAGTAGCACCTGGACCGTGCGCAGCGGTGTGGTaGGCTCCCGCTGGTACTCCAGGGTCCAAAGGCCTA +
Preference number: 6 (lower is better)
Translates to: DLVAPGPCAAVW*APAGTPGSKGL
Trigger: TAGGCCTTTGGACCCTGGAGTACCAGCGGGAGCTCACCACACCGCTGCGCACGGTCCAGGTGCTACTAAATC
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000097656.10
CDS TCA 72 bp CAAACACCGCGTTGGCATCCCAGAAGCACTGGTCCATaGGGAGCCGGATGTGGTCCAGGTCTCCTGCCAGCA +
Preference number: 6 (lower is better)
Translates to: QTPRWHPRSTGP*GAGCGPGLLPA
Trigger: TGCTGGCAGGAGACCTGGACCACATCCGGCTCCTCATGGACCAGTGCTTCTGGGATGCCAACGCGGTGTTTG
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000238685.2
CDS CAA 90 bp AGCGTGGAACGCAAGCTCGGGAGTCCCAGCTCTGATCTGTGGCTCTaGGCTCATCTTCTGCAAGATCTGCAGCTTTCTCCCAGCTGGCTC +
Preference number: 6 (lower is better)
Translates to: SVERKLGSPSSDLWL*AHLLQDLQLSPSWL
Trigger: GAGCCAGCTGGGAGAAAGCTGCAGATCTTGCAGAAGATGAGCCAAGAGCCACAGATCAGAGCTGGGACTCCCGAGCTTGCGTTCCACGCT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000238685.2
CDS TCA 72 bp CAAACACCGCGTTGGCATCCCAGAAGCACTGGTCCATaGGGAGCCGGATGTGGTCCAGGTCTCCTAGCAGTA +
Preference number: 6 (lower is better)
Translates to: QTPRWHPRSTGP*GAGCGPGLLAV
Trigger: TACTGCTAGGAGACCTGGACCACATCCGGCTCCTCATGGACCAGTGCTTCTGGGATGCCAACGCGGTGTTTG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000086882.8
CDS CAA 90 bp GTCACCTGCCATTCCATCTCTCCGTTACTGATCTCAAACACCGCGTaGGCATCCCAGAAGCACTGGTCCATGAGGAGCCGGATGTGGTCC +
Preference number: 6 (lower is better)
Translates to: VTCHSISPLLISNTA*ASQKHWSMRSRMWS
Trigger: GGACCACATCCGGCTCCTCATGGACCAGTGCTTCTGGGATGCCAACGCGGTGTTTGAGATCAGTAACGGAGAGATGGAATGGCAGGTGAC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000086882.8
ENSMUST00000238685.2
CDS CAA 72 bp CGCAAGCTCGGGAGTCCCAGCTCTGATCTGTGGCTCTaGGCTCATCTTCTGCAAGATCTGCAGCTTTCTCCC +
Preference number: 6 (lower is better)
Translates to: RKLGSPSSDLWL*AHLLQDLQLSP
Trigger: GGGAGAAAGCTGCAGATCTTGCAGAAGATGAGCCAAGAGCCACAGATCAGAGCTGGGACTCCCGAGCTTGCG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000238685.2
CDS GCA 72 bp AGGCCTGAGAGCCCAAAGGTGGCCAGGGATGTCACCTaGCATTCCATCTCTCCGTTACTGATCTCAAACACC +
Preference number: 6 (lower is better)
Translates to: RPESPKVARDVT*HSISPLLISNT
Trigger: GGTGTTTGAGATCAGTAACGGAGAGATGGAATGGCAGGTGACATCCCTGGCCACCTTTGGGCTCTCAGGCCT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000086882.8
ENSMUST00000238685.2
CDS GCA 72 bp GTCCCAGCTCTGATCTGTGGCTCTTGGCTCATCTTCTaGAAGATCTGCAGCTTTCTCCCAGCTGGCTCTGGT +
Preference number: 6 (lower is better)
Translates to: VPALICGSWLIF*KICSFLPAGSG
Trigger: ACCAGAGCCAGCTGGGAGAAAGCTGCAGATCTTGCAGAAGATGAGCCAAGAGCCACAGATCAGAGCTGGGAC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000238685.2
CDS CCA 72 bp GCAAGCTCGGGAGTCCCAGCTCTGATCTGTGGCTCTTaGCTCATCTTCTGCAAGATCTGCAGCTTTCTCCCA +
Preference number: 6 (lower is better)
Translates to: ASSGVPALICGS*LIFCKICSFLP
Trigger: TGGGAGAAAGCTGCAGATCTTGCAGAAGATGAGCCAAGAGCCACAGATCAGAGCTGGGACTCCCGAGCTTGC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000238685.2
CDS CCA 72 bp GTGGAACGCAAGCTCGGGAGTCCCAGCTCTGATCTGTaGCTCTTGGCTCATCTTCTGCAAGATCTGCAGCTT +
Preference number: 6 (lower is better)
Translates to: VERKLGSPSSDL*LLAHLLQDLQL
Trigger: AAGCTGCAGATCTTGCAGAAGATGAGCCAAGAGCCACAGATCAGAGCTGGGACTCCCGAGCTTGCGTTCCAC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000238685.2
CDS CAA 72 bp CATTCCATCTCTCCGTTACTGATCTCAAACACCGCGTaGGCATCCCAGAAGCACTGGTCCATGAGGAGCCGG +
Preference number: 6 (lower is better)
Translates to: HSISPLLISNTA*ASQKHWSMRSR
Trigger: CCGGCTCCTCATGGACCAGTGCTTCTGGGATGCCAACGCGGTGTTTGAGATCAGTAACGGAGAGATGGAATG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000086882.8
ENSMUST00000238685.2
CDS TCA 72 bp CCAGGGATGTCACCTGCCATTCCATCTCTCCGTTACTaGTCTCAAACACCGCGTTGGCATCCCAGAAGCACT +
Preference number: 6 (lower is better)
Translates to: PGMSPAIPSLRY*SQTPRWHPRST
Trigger: AGTGCTTCTGGGATGCCAACGCGGTGTTTGAGATCAGTAACGGAGAGATGGAATGGCAGGTGACATCCCTGG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000086882.8
ENSMUST00000238685.2
CDS CCA 72 bp TGCAGATCAGCTTCTGTACAGTGTCCTCGTCCCCAGTaGCCAGAGCAGACTTTAATCTCCTCACTATGTCTG +
Preference number: 6 (lower is better)
Translates to: CRSASVQCPRPQ*PEQTLISSLCL
Trigger: CAGACATAGTGAGGAGATTAAAGTCTGCTCTGGCCACTGGGGACGAGGACACTGTACAGAAGCTGATCTGCA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000086882.8
ENSMUST00000097656.10
ENSMUST00000151330.2
ENSMUST00000154228.8