Pregenerated sensors for ASB12 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000031204Ensembl transcript IDs: ENSMUST00000033549.3, ENSMUST00000134899.3
Found 21 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR TCA 90 bp | TGTGCTGAGGATTTTGTTGTGGAAAATAATACGCCAGAAATGTTATaGGGTGTATTATTCACTCAAGTAACCTGGGTTACCAGGTTTATT | + |
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Preference number: 1 (lower is better) Translates to: CAEDFVVENNTPEML*GVLFTQVTWVTRFI Trigger: AATAAACCTGGTAACCCAGGTTACTTGAGTGAATAATACACCTCATAACATTTCTGGCGTATTATTTTCCACAACAAAATCCTCAGCACA 37% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000033549.3 |
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| 3UTR TCA 72 bp | GATTTTGTTGTGGAAAATAATACGCCAGAAATGTTATaGGGTGTATTATTCACTCAAGTAACCTGGGTTACC | + |
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Preference number: 3 (lower is better) Translates to: DFVVENNTPEML*GVLFTQVTWVT Trigger: GGTAACCCAGGTTACTTGAGTGAATAATACACCTCATAACATTTCTGGCGTATTATTTTCCACAACAAAATC 36% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000033549.3 |
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| CDS CCA 90 bp | GACTGGTTCGCCCGGCAGAGGGATCTGCGGATAACTAAACGGGTCTaGGACAGGAGTGACCGTGGAGTGGCTCGGGCTTGTAGCAGCAAT | + |
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Preference number: 5 (lower is better) Translates to: DWFARQRDLRITKRV*DRSDRGVARACSSN Trigger: ATTGCTGCTACAAGCCCGAGCCACTCCACGGTCACTCCTGTCCCAGACCCGTTTAGTTATCCGCAGATCCCTCTGCCGGGCGAACCAGTC 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000033549.3 |
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| CDS GCA 90 bp | GACGCCCAGACTGGTAGTTTAGCTTTGACATTAGCCTCGGCACCATaGCCTAGGAGCTCCTGTAAGATGGCAAAAGCCCCATCACGTGAG | + |
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Preference number: 5 (lower is better) Translates to: DAQTGSLALTLASAP*PRSSCKMAKAPSRE Trigger: CTCACGTGATGGGGCTTTTGCCATCTTACAGGAGCTCCTAGGGCATGGTGCCGAGGCTAATGTCAAAGCTAAACTACCAGTCTGGGCGTC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000033549.3 |
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| CDS TCA 90 bp | GGGACAGGAGTGACCGTGGAGTGGCTCGGGCTTGTAGCAGCAATTTaGTGCCTTTATCATCTTGTGAAGTTGGGTCCACAGGGAGAGATG | + |
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Preference number: 5 (lower is better) Translates to: GTGVTVEWLGLVAAI*CLYHLVKLGPQGEM Trigger: CATCTCTCCCTGTGGACCCAACTTCACAAGATGATAAAGGCATCAAATTGCTGCTACAAGCCCGAGCCACTCCACGGTCACTCCTGTCCC 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000033549.3 |
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| CDS TCA 90 bp | CTAGGACAGGCACCAGCTTCTAAAAGCATTCTCACGCACTCCAGATaGCCGTGGCTCACAGCAGTGAAAAGTGGTGTTTGTGCTTTGACA | + |
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Preference number: 5 (lower is better) Translates to: LGQAPASKSILTHSR*PWLTAVKSGVCALT Trigger: TGTCAAAGCACAAACACCACTTTTCACTGCTGTGAGCCACGGTCATCTGGAGTGCGTGAGAATGCTTTTAGAAGCTGGTGCCTGTCCTAG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000033549.3 |
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| CDS GCA 90 bp | TGTACTCTGGCTCACAATTATGATGAAGGCAGATTTCAAGGAGTGTaGGAGGCTGTGGAACACGACTTAAAAGGCCCTGGTCAGTGCAGT | + |
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Preference number: 5 (lower is better) Translates to: CTLAHNYDEGRFQGV*EAVEHDLKGPGQCS Trigger: ACTGCACTGACCAGGGCCTTTTAAGTCGTGTTCCACAGCCTCGCACACTCCTTGAAATCTGCCTTCATCATAATTGTGAGCCAGAGTACA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000033549.3 |
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| CDS CCA 72 bp | GCCCGGCAGAGGGATCTGCGGATAACTAAACGGGTCTaGGACAGGAGTGACCGTGGAGTGGCTCGGGCTTGT | + |
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Preference number: 6 (lower is better) Translates to: ARQRDLRITKRV*DRSDRGVARAC Trigger: ACAAGCCCGAGCCACTCCACGGTCACTCCTGTCCCAGACCCGTTTAGTTATCCGCAGATCCCTCTGCCGGGC 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000033549.3 |
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| CDS CAA 90 bp | TGGGACAGGAGTGACCGTGGAGTGGCTCGGGCTTGTAGCAGCAATTaGATGCCTTTATCATCTTGTGAAGTTGGGTCCACAGGGAGAGAT | + |
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Preference number: 6 (lower is better) Translates to: WDRSDRGVARACSSN*MPLSSCEVGSTGRD Trigger: ATCTCTCCCTGTGGACCCAACTTCACAAGATGATAAAGGCATCAAATTGCTGCTACAAGCCCGAGCCACTCCACGGTCACTCCTGTCCCA 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000033549.3 |
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| CDS TCA 72 bp | CCAGGGTACAGGAGTCATTGTCATATACAGCTTGATTaGGAGCCTGTTTTTCCCCGGTGCCAGTGTCCTCCT | + |
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Preference number: 6 (lower is better) Translates to: PGYRSHCHIQLD*EPVFPRCQCPP Trigger: AGGAGGACACTGGCACCGGGGAAAAACAGGCTCTCAATCAAGCTGTATATGACAATGACTCCTGTACCCTGG 51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000033549.3 ENSMUST00000134899.3 |
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| CDS TCA 72 bp | TGGTCCAGGGTACAGGAGTCATTGTCATATACAGCTTaGTTGAGAGCCTGTTTTTCCCCGGTGCCAGTGTCC | + |
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Preference number: 6 (lower is better) Translates to: WSRVQESLSYTA*LRACFSPVPVS Trigger: GGACACTGGCACCGGGGAAAAACAGGCTCTCAATCAAGCTGTATATGACAATGACTCCTGTACCCTGGACCA 51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000033549.3 ENSMUST00000134899.3 |
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| CDS TCA 72 bp | GTGACCGTGGAGTGGCTCGGGCTTGTAGCAGCAATTTaGTGCCTTTATCATCTTGTGAAGTTGGGTCCACAG | + |
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Preference number: 6 (lower is better) Translates to: VTVEWLGLVAAI*CLYHLVKLGPQ Trigger: CTGTGGACCCAACTTCACAAGATGATAAAGGCATCAAATTGCTGCTACAAGCCCGAGCCACTCCACGGTCAC 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000033549.3 |
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| CDS GCA 72 bp | ACTGGTAGTTTAGCTTTGACATTAGCCTCGGCACCATaGCCTAGGAGCTCCTGTAAGATGGCAAAAGCCCCA | + |
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Preference number: 6 (lower is better) Translates to: TGSLALTLASAP*PRSSCKMAKAP Trigger: TGGGGCTTTTGCCATCTTACAGGAGCTCCTAGGGCATGGTGCCGAGGCTAATGTCAAAGCTAAACTACCAGT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000033549.3 |
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| CDS CAA 72 bp | GTGGTCCAGGGTACAGGAGTCATTGTCATATACAGCTaGATTGAGAGCCTGTTTTTCCCCGGTGCCAGTGTC | + |
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Preference number: 6 (lower is better) Translates to: VVQGTGVIVIYS*IESLFFPGASV Trigger: GACACTGGCACCGGGGAAAAACAGGCTCTCAATCAAGCTGTATATGACAATGACTCCTGTACCCTGGACCAC 51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000033549.3 ENSMUST00000134899.3 |
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| CDS CAA 72 bp | GAAGCTATATTTGACGCCCAGACTGGTAGTTTAGCTTaGACATTAGCCTCGGCACCATGCCCTAGGAGCTCC | + |
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Preference number: 6 (lower is better) Translates to: EAIFDAQTGSLA*TLASAPCPRSS Trigger: GGAGCTCCTAGGGCATGGTGCCGAGGCTAATGTCAAAGCTAAACTACCAGTCTGGGCGTCAAATATAGCTTC 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000033549.3 |
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| CDS TCA 72 bp | GCACCAGCTTCTAAAAGCATTCTCACGCACTCCAGATaGCCGTGGCTCACAGCAGTGAAAAGTGGTGTTTGT | + |
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Preference number: 6 (lower is better) Translates to: APASKSILTHSR*PWLTAVKSGVC Trigger: ACAAACACCACTTTTCACTGCTGTGAGCCACGGTCATCTGGAGTGCGTGAGAATGCTTTTAGAAGCTGGTGC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000033549.3 |
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| CDS TCA 72 bp | CCTGTAAGATGGCAAAAGCCCCATCACGTGAGGCAGTaGGAACAGGAGAGCAATTGTTGTAGATGCTACCAC | + |
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Preference number: 6 (lower is better) Translates to: PVRWQKPHHVRQ*EQESNCCRCYH Trigger: GTGGTAGCATCTACAACAATTGCTCTCCTGTTCTCACTGCCTCACGTGATGGGGCTTTTGCCATCTTACAGG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000033549.3 |
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| CDS GCA 72 bp | GAGGCTGTGGAACACGACTTAAAAGGCCCTGGTCAGTaGAGTTGTAATCAGGATCTGCCCCATAGAGCAAAA | + |
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Preference number: 6 (lower is better) Translates to: EAVEHDLKGPGQ*SCNQDLPHRAK Trigger: TTTTGCTCTATGGGGCAGATCCTGATTACAACTGCACTGACCAGGGCCTTTTAAGTCGTGTTCCACAGCCTC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000033549.3 |
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| CDS CAA 90 bp | CCAGAACATGAAGCTATATTTGACGCCCAGACTGGTAGTTTAGCTTaGACATTAGCCTCGGCACCATGCCCTAGGAGCTCCTGTAAGATG | + |
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Preference number: 6 (lower is better) Translates to: PEHEAIFDAQTGSLA*TLASAPCPRSSCKM Trigger: CATCTTACAGGAGCTCCTAGGGCATGGTGCCGAGGCTAATGTCAAAGCTAAACTACCAGTCTGGGCGTCAAATATAGCTTCATGTTCTGG 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000033549.3 |
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| CDS GCA 72 bp | GCTCACAATTATGATGAAGGCAGATTTCAAGGAGTGTaGGAGGCTGTGGAACACGACTTAAAAGGCCCTGGT | + |
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Preference number: 6 (lower is better) Translates to: AHNYDEGRFQGV*EAVEHDLKGPG Trigger: ACCAGGGCCTTTTAAGTCGTGTTCCACAGCCTCGCACACTCCTTGAAATCTGCCTTCATCATAATTGTGAGC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000033549.3 |
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| CDS CAA 72 bp | CAGATGACCGTGGCTCACAGCAGTGAAAAGTGGTGTTaGTGCTTTGACATCCAAGCTATCAACATCAGCACC | + |
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Preference number: 6 (lower is better) Translates to: QMTVAHSSEKWC*CFDIQAINIST Trigger: GGTGCTGATGTTGATAGCTTGGATGTCAAAGCACAAACACCACTTTTCACTGCTGTGAGCCACGGTCATCTG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000033549.3 |
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