RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for ASAP2 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000052632

Ensembl transcript IDs: ENSMUST00000050990.10, ENSMUST00000064595.15, ENSMUST00000090834.13, ENSMUST00000101562.11

Found 486 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR TCA 90 bp CTTACTGTGGCCCGCACCACATATTCTACCTGTGTGACGGGATGCTaGACGAGGCAAATCCTCAAACCCCCAGGCATGCGAGCTAGTTTA +
Preference number: 1 (lower is better)
Translates to: LTVARTTYSTCVTGC*TRQILKPPGMRASL
Trigger: TAAACTAGCTCGCATGCCTGGGGGTTTGAGGATTTGCCTCGTTCAGCATCCCGTCACACAGGTAGAATATGTGGTGCGGGCCACAGTAAG
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000064595.15
ENSMUST00000090834.13
ENSMUST00000101562.11
3UTR CCA 90 bp TTGGTGGACAAGGTCCAGGGTAGGGCGACAGACCTGGAAGCAGTATaGTGCTGGCTTGCTAAGCTGACTGTGCTAAACAAGATAACCAAT +
Preference number: 1 (lower is better)
Translates to: LVDKVQGRATDLEAV*CWLAKLTVLNKITN
Trigger: ATTGGTTATCTTGTTTAGCACAGTCAGCTTAGCAAGCCAGCACCATACTGCTTCCAGGTCTGTCGCCCTACCCTGGACCTTGTCCACCAA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000064595.15
ENSMUST00000090834.13
ENSMUST00000101562.11
3UTR GCA 90 bp CCATTCCTTTTGCTCAAACTCCAGCTTTCGTTCAGGCCTTATGCTTaGCTCTTTCATTTCCCATATCCTAACCACGGCTCTTACCTGTGC +
Preference number: 1 (lower is better)
Translates to: PFLLLKLQLSFRPYA*LFHFPYPNHGSYLC
Trigger: GCACAGGTAAGAGCCGTGGTTAGGATATGGGAAATGAAAGAGGCAAGCATAAGGCCTGAACGAAAGCTGGAGTTTGAGCAAAAGGAATGG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000064595.15
ENSMUST00000090834.13
ENSMUST00000101562.11
3UTR CCA 90 bp GTTTCAAAGGAATACATGTCTTTAAAGGTGAATGGATGGCATTGGTaGACAAGGTCCAGGGTAGGGCGACAGACCTGGAAGCAGTATGGT +
Preference number: 1 (lower is better)
Translates to: VSKEYMSLKVNGWHW*TRSRVGRQTWKQYG
Trigger: ACCATACTGCTTCCAGGTCTGTCGCCCTACCCTGGACCTTGTCCACCAATGCCATCCATTCACCTTTAAAGACATGTATTCCTTTGAAAC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000064595.15
ENSMUST00000090834.13
ENSMUST00000101562.11
3UTR GCA 90 bp GCTTGCCTCTTTCATTTCCCATATCCTAACCACGGCTCTTACCTGTaGTTAATGTTATTAAGTAGAGGTATGACAGTCAAGTTCATGAAA +
Preference number: 1 (lower is better)
Translates to: ACLFHFPYPNHGSYL*LMLLSRGMTVKFMK
Trigger: TTTCATGAACTTGACTGTCATACCTCTACTTAATAACATTAAGCACAGGTAAGAGCCGTGGTTAGGATATGGGAAATGAAAGAGGCAAGC
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000064595.15
ENSMUST00000090834.13
ENSMUST00000101562.11
3UTR-3UTR GCA 90 bp GCTTACTGTGGCCCGCACCACATATTCTACCTGTGTGACGGGATGCTGAACGAGGGAGATCATGGCAGCTaGCACCTCACAGATGGGGAA +
Preference number: 2 (lower is better)
Translates to: AYCGPHHIFYLCDGMLNEGDHGS*HLTDGE
Trigger: TTCCCCATCTGTGAGGTGGCAGCTGCCATGATCTCC...CTCGTTCAGCATCCCGTCACACAGGTAGAATATGTGGTGCGGGCCACAGTAAGC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000064595.15
ENSMUST00000090834.13
ENSMUST00000101562.11
3UTR-3UTR GCA 90 bp GTTTGGGGGCACTGGGCTCCCCAAGGTCTACAGATTTCTGATATGTTCTTGACTGGAGATCATGGCAGCTaGCACCTCACAGATGGGGAA +
Preference number: 2 (lower is better)
Translates to: VWGHWAPQGLQISDMFLTGDHGS*HLTDGE
Trigger: TTCCCCATCTGTGAGGTGGCAGCTGCCATGATCTCC...AGTCAAGAACATATCAGAAATCTGTAGACCTTGGGGAGCCCAGTGCCCCCAAAC
52% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000064595.15
ENSMUST00000090834.13
ENSMUST00000101562.11
3UTR-3UTR GCA 90 bp GCTTACTGTGGCCCGCACCACATATTCTACCTGTGTGACGGGATGCTGAACGAGACCAAATTCAGGATCTaGAGCTTAAACTACCTGGTG +
Preference number: 2 (lower is better)
Translates to: AYCGPHHIFYLCDGMLNETKFRI*SLNYLV
Trigger: CACCAGGTAGTTTAAGCTGCAGATCCTGAATTTGGT...CTCGTTCAGCATCCCGTCACACAGGTAGAATATGTGGTGCGGGCCACAGTAAGC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000064595.15
ENSMUST00000090834.13
ENSMUST00000101562.11
3UTR-3UTR CCA 90 bp CGTTCAGGCCTTATGCTTGCCTCTTTCATTTCCCATATCCTAACCACGGCTCTTAATGGATGGCATTGGTaGACAAGGTCCAGGGTAGGG +
Preference number: 2 (lower is better)
Translates to: RSGLMLASFISHILTTALNGWHW*TRSRVG
Trigger: CCCTACCCTGGACCTTGTCCACCAATGCCATCCATT...AAGAGCCGTGGTTAGGATATGGGAAATGAAAGAGGCAAGCATAAGGCCTGAACG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000064595.15
ENSMUST00000090834.13
ENSMUST00000101562.11
3UTR-3UTR CCA 90 bp GTTTGGGGGCACTGGGCTCCCCAAGGTCTACAGATTTCTGATATGTTCTTGACTGTGAATGGATGGCATTaGTGGACAAGGTCCAGGGTA +
Preference number: 2 (lower is better)
Translates to: VWGHWAPQGLQISDMFLTVNGWH*WTRSRV
Trigger: TACCCTGGACCTTGTCCACCAATGCCATCCATTCAC...AGTCAAGAACATATCAGAAATCTGTAGACCTTGGGGAGCCCAGTGCCCCCAAAC
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000064595.15
ENSMUST00000090834.13
ENSMUST00000101562.11
3UTR-3UTR CCA 90 bp CGTTCAGGCCTTATGCTTGCCTCTTTCATTTCCCATATCCTAACCACGGCTCTTAGGCTCAGCTACTCCTaGAAATACAGGATCCTGGGT +
Preference number: 2 (lower is better)
Translates to: RSGLMLASFISHILTTALRLSYS*KYRILG
Trigger: ACCCAGGATCCTGTATTTCCAGGAGTAGCTGAGCCT...AAGAGCCGTGGTTAGGATATGGGAAATGAAAGAGGCAAGCATAAGGCCTGAACG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000064595.15
ENSMUST00000090834.13
ENSMUST00000101562.11
3UTR-3UTR CCA 90 bp CGTTCAGGCCTTATGCTTGCCTCTTTCATTTCCCATATCCTAACCACGGCTCTTGTGAATGGATGGCATTaGTGGACAAGGTCCAGGGTA +
Preference number: 2 (lower is better)
Translates to: RSGLMLASFISHILTTALVNGWH*WTRSRV
Trigger: TACCCTGGACCTTGTCCACCAATGCCATCCATTCAC...AAGAGCCGTGGTTAGGATATGGGAAATGAAAGAGGCAAGCATAAGGCCTGAACG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000064595.15
ENSMUST00000090834.13
ENSMUST00000101562.11
3UTR CAA 90 bp CTGAGTTTCAAAGGAATACATGTCTTTAAAGGTGAATGGATGGCATaGGTGGACAAGGTCCAGGGTAGGGCGACAGACCTGGAAGCAGTA +
Preference number: 2 (lower is better)
Translates to: LSFKGIHVFKGEWMA*VDKVQGRATDLEAV
Trigger: TACTGCTTCCAGGTCTGTCGCCCTACCCTGGACCTTGTCCACCAATGCCATCCATTCACCTTTAAAGACATGTATTCCTTTGAAACTCAG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000064595.15
ENSMUST00000090834.13
ENSMUST00000101562.11
3UTR-3UTR CCA 90 bp CCGCACCACATATTCTACCTGTGTGACGGGATGCTGAACGAGGCAAATCCTCAAGTCTTTAAAGGTGAATaGATGGCATTGGTGGACAAG +
Preference number: 2 (lower is better)
Translates to: PHHIFYLCDGMLNEANPQVFKGE*MALVDK
Trigger: CTTGTCCACCAATGCCATCCATTCACCTTTAAAGAC...TTGAGGATTTGCCTCGTTCAGCATCCCGTCACACAGGTAGAATATGTGGTGCGG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000064595.15
ENSMUST00000090834.13
ENSMUST00000101562.11
3UTR-3UTR CCA 90 bp CTCAAAATAGCATTCTTGGCTGCAGGTCATTCTCCACCTCAGCAGATCACATTAAGGCTCAGCTACTCCTaGAAATACAGGATCCTGGGT +
Preference number: 2 (lower is better)
Translates to: LKIAFLAAGHSPPQQITLRLSYS*KYRILG
Trigger: ACCCAGGATCCTGTATTTCCAGGAGTAGCTGAGCCT...TAATGTGATCTGCTGAGGTGGAGAATGACCTGCAGCCAAGAATGCTATTTTGAG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000064595.15
ENSMUST00000090834.13
ENSMUST00000101562.11
3UTR-3UTR CCA 90 bp CTCAAAATAGCATTCTTGGCTGCAGGTCATTCTCCACCTCAGCAGATCACATTAGTGAATGGATGGCATTaGTGGACAAGGTCCAGGGTA +
Preference number: 2 (lower is better)
Translates to: LKIAFLAAGHSPPQQITLVNGWH*WTRSRV
Trigger: TACCCTGGACCTTGTCCACCAATGCCATCCATTCAC...TAATGTGATCTGCTGAGGTGGAGAATGACCTGCAGCCAAGAATGCTATTTTGAG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000064595.15
ENSMUST00000090834.13
ENSMUST00000101562.11
3UTR-3UTR TCA 90 bp GACATTCCAGTTTGTCCTGTTTTCCTTGAAAGAAACAAAGAGAGAGCTCTGAGCTGTGTGACGGGATGCTaGACGAGGCAAATCCTCAAA +
Preference number: 2 (lower is better)
Translates to: DIPVCPVFLERNKERALSCVTGC*TRQILK
Trigger: TTTGAGGATTTGCCTCGTTCAGCATCCCGTCACACA...GCTCAGAGCTCTCTCTTTGTTTCTTTCAAGGAAAACAGGACAAACTGGAATGTC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000064595.15
ENSMUST00000090834.13
ENSMUST00000101562.11
3UTR-3UTR CCA 90 bp TGCTTTCCTTTCAGTTGCTTTCTCTTCTCAGTTTGCAAAGAGCGAGTAACAGGAGAAGCAGTATGGTGCTaGCTTGCTAAGCTGACTGTG +
Preference number: 2 (lower is better)
Translates to: CFPFSCFLFSVCKERVTGEAVWC*LAKLTV
Trigger: CACAGTCAGCTTAGCAAGCCAGCACCATACTGCTTC...TCCTGTTACTCGCTCTTTGCAAACTGAGAAGAGAAAGCAACTGAAAGGAAAGCA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000064595.15
ENSMUST00000090834.13
ENSMUST00000101562.11
3UTR-3UTR TCA 90 bp AAGCTGTTTTTAGGCTCAGCTACTCCTGGAAATACAGGATCCTGGGTATACAGTAACAGGACAGTATCATaGAAAGATGGGCTGCCGTAT +
Preference number: 2 (lower is better)
Translates to: KLFLGSATPGNTGSWVYSNRTVS*KDGLPY
Trigger: ATACGGCAGCCCATCTTTTCATGATACTGTCCTGTT...ACTGTATACCCAGGATCCTGTATTTCCAGGAGTAGCTGAGCCTAAAAACAGCTT
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000050990.10
ENSMUST00000064595.15
ENSMUST00000090834.13
ENSMUST00000101562.11
3UTR-3UTR TCA 90 bp CTCAAAATAGCATTCTTGGCTGCAGGTCATTCTCCACCTCAGCAGATCACATTAAACAGGACAGTATCATaGAAAGATGGGCTGCCGTAT +
Preference number: 2 (lower is better)
Translates to: LKIAFLAAGHSPPQQITLNRTVS*KDGLPY
Trigger: ATACGGCAGCCCATCTTTTCATGATACTGTCCTGTT...TAATGTGATCTGCTGAGGTGGAGAATGACCTGCAGCCAAGAATGCTATTTTGAG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000064595.15
ENSMUST00000090834.13
ENSMUST00000101562.11
3UTR-3UTR CCA 90 bp CCATATCCTAACCACGGCTCTTACCTGTGCTTAATGTTATTAAGTAGAGGTATGGAAGCAGTATGGTGCTaGCTTGCTAAGCTGACTGTG +
Preference number: 2 (lower is better)
Translates to: PYPNHGSYLCLMLLSRGMEAVWC*LAKLTV
Trigger: CACAGTCAGCTTAGCAAGCCAGCACCATACTGCTTC...CATACCTCTACTTAATAACATTAAGCACAGGTAAGAGCCGTGGTTAGGATATGG
44% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000064595.15
ENSMUST00000090834.13
ENSMUST00000101562.11
3UTR-3UTR CCA 90 bp TTACATAGTGTAACTGGGATGTTTGGGGGCACTGGGCTCCCCAAGGTCTACAGAAGCTACCATTCCTTTTaGAGAATCCTATTAAGACAA +
Preference number: 2 (lower is better)
Translates to: LHSVTGMFGGTGLPKVYRSYHSF*RILLRQ
Trigger: TTGTCTTAATAGGATTCTCCAAAAGGAATGGTAGCT...TCTGTAGACCTTGGGGAGCCCAGTGCCCCCAAACATCCCAGTTACACTATGTAA
44% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000064595.15
ENSMUST00000090834.13
ENSMUST00000101562.11
3UTR-3UTR TCA 90 bp TTGTTTAAGCTGTTTTTAGGCTCAGCTACTCCTGGAAATACAGGATCCTGGGTAAACAGGACAGTATCATaGAAAGATGGGCTGCCGTAT +
Preference number: 2 (lower is better)
Translates to: LFKLFLGSATPGNTGSWVNRTVS*KDGLPY
Trigger: ATACGGCAGCCCATCTTTTCATGATACTGTCCTGTT...TACCCAGGATCCTGTATTTCCAGGAGTAGCTGAGCCTAAAAACAGCTTAAACAA
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000050990.10
ENSMUST00000064595.15
ENSMUST00000090834.13
ENSMUST00000101562.11
3UTR-3UTR TCA 90 bp CTCAAAATAGCATTCTTGGCTGCAGGTCATTCTCCACCTCAGCAGATCACATTATTTTCACCCAGAATCTaGAAGACAGGAAGCAATCAC +
Preference number: 2 (lower is better)
Translates to: LKIAFLAAGHSPPQQITLFSPRI*KTGSNH
Trigger: GTGATTGCTTCCTGTCTTTCAGATTCTGGGTGAAAA...TAATGTGATCTGCTGAGGTGGAGAATGACCTGCAGCCAAGAATGCTATTTTGAG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000064595.15
ENSMUST00000090834.13
ENSMUST00000101562.11
3UTR-3UTR TCA 90 bp CCAAATTTGTTTAAGCTGTTTTTAGGCTCAGCTACTCCTGGAAATACAGGATCCAACAGGACAGTATCATaGAAAGATGGGCTGCCGTAT +
Preference number: 2 (lower is better)
Translates to: PNLFKLFLGSATPGNTGSNRTVS*KDGLPY
Trigger: ATACGGCAGCCCATCTTTTCATGATACTGTCCTGTT...GGATCCTGTATTTCCAGGAGTAGCTGAGCCTAAAAACAGCTTAAACAAATTTGG
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000050990.10
ENSMUST00000064595.15
ENSMUST00000090834.13
ENSMUST00000101562.11
3UTR-3UTR TCA 90 bp TGCTTTCCTTTCAGTTGCTTTCTCTTCTCAGTTTGCAAAGAGCGAGTAACAGGATTTTCACCCAGAATCTaGAAGACAGGAAGCAATCAC +
Preference number: 2 (lower is better)
Translates to: CFPFSCFLFSVCKERVTGFSPRI*KTGSNH
Trigger: GTGATTGCTTCCTGTCTTTCAGATTCTGGGTGAAAA...TCCTGTTACTCGCTCTTTGCAAACTGAGAAGAGAAAGCAACTGAAAGGAAAGCA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000064595.15
ENSMUST00000090834.13
ENSMUST00000101562.11
3UTR-3UTR GCA 90 bp CTCAAAATAGCATTCTTGGCTGCAGGTCATTCTCCACCTCAGCAGATCACATTAAAAGGTATTGGGAAGTaGAATGTGCAAAACGCATCT +
Preference number: 2 (lower is better)
Translates to: LKIAFLAAGHSPPQQITLKGIGK*NVQNAS
Trigger: AGATGCGTTTTGCACATTGCACTTCCCAATACCTTT...TAATGTGATCTGCTGAGGTGGAGAATGACCTGCAGCCAAGAATGCTATTTTGAG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000064595.15
ENSMUST00000090834.13
ENSMUST00000101562.11
3UTR-3UTR CCA 90 bp GACATTCCAGTTTGTCCTGTTTTCCTTGAAAGAAACAAAGAGAGAGCTCTGAGCGTCTTTAAAGGTGAATaGATGGCATTGGTGGACAAG +
Preference number: 2 (lower is better)
Translates to: DIPVCPVFLERNKERALSVFKGE*MALVDK
Trigger: CTTGTCCACCAATGCCATCCATTCACCTTTAAAGAC...GCTCAGAGCTCTCTCTTTGTTTCTTTCAAGGAAAACAGGACAAACTGGAATGTC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000064595.15
ENSMUST00000090834.13
ENSMUST00000101562.11
3UTR-3UTR CCA 90 bp CGTTCAGGCCTTATGCTTGCCTCTTTCATTTCCCATATCCTAACCACGGCTCTTAGCTACCATTCCTTTTaGAGAATCCTATTAAGACAA +
Preference number: 2 (lower is better)
Translates to: RSGLMLASFISHILTTALSYHSF*RILLRQ
Trigger: TTGTCTTAATAGGATTCTCCAAAAGGAATGGTAGCT...AAGAGCCGTGGTTAGGATATGGGAAATGAAAGAGGCAAGCATAAGGCCTGAACG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000064595.15
ENSMUST00000090834.13
ENSMUST00000101562.11
3UTR CAA 90 bp AATCAAGTGAATGAATTGAATATCATACATCTCAAAATAGCATTCTaGGCTGCAGGTCATTCTCCACCTCAGCAGATCACATTAGTCTGC +
Preference number: 2 (lower is better)
Translates to: NQVNELNIIHLKIAF*AAGHSPPQQITLVC
Trigger: GCAGACTAATGTGATCTGCTGAGGTGGAGAATGACCTGCAGCCAAGAATGCTATTTTGAGATGTATGATATTCAATTCATTCACTTGATT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000064595.15
ENSMUST00000090834.13
ENSMUST00000101562.11
3UTR-3UTR CCA 90 bp CCATATCCTAACCACGGCTCTTACCTGTGCTTAATGTTATTAAGTAGAGGTATGGCTTTAAATAGACACTaGCTGAGTTTCAAAGGAATA +
Preference number: 2 (lower is better)
Translates to: PYPNHGSYLCLMLLSRGMALNRH*LSFKGI
Trigger: TATTCCTTTGAAACTCAGCCAGTGTCTATTTAAAGC...CATACCTCTACTTAATAACATTAAGCACAGGTAAGAGCCGTGGTTAGGATATGG
38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000064595.15
ENSMUST00000090834.13
ENSMUST00000101562.11
3UTR CAA 90 bp TATACAGTTGCGCTGCAACTAGACCAAAGTAATCAAGTGAATGAATaGAATATCATACATCTCAAAATAGCATTCTTGGCTGCAGGTCAT +
Preference number: 2 (lower is better)
Translates to: YTVALQLDQSNQVNE*NIIHLKIAFLAAGH
Trigger: ATGACCTGCAGCCAAGAATGCTATTTTGAGATGTATGATATTCAATTCATTCACTTGATTACTTTGGTCTAGTTGCAGCGCAACTGTATA
37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000064595.15
ENSMUST00000090834.13
ENSMUST00000101562.11
3UTR TCA 72 bp GCCCGCACCACATATTCTACCTGTGTGACGGGATGCTaGACGAGGCAAATCCTCAAACCCCCAGGCATGCGA +
Preference number: 3 (lower is better)
Translates to: ARTTYSTCVTGC*TRQILKPPGMR
Trigger: TCGCATGCCTGGGGGTTTGAGGATTTGCCTCGTTCAGCATCCCGTCACACAGGTAGAATATGTGGTGCGGGC
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000064595.15
ENSMUST00000090834.13
ENSMUST00000101562.11
3UTR CCA 72 bp AAGGTCCAGGGTAGGGCGACAGACCTGGAAGCAGTATaGTGCTGGCTTGCTAAGCTGACTGTGCTAAACAAG +
Preference number: 3 (lower is better)
Translates to: KVQGRATDLEAV*CWLAKLTVLNK
Trigger: CTTGTTTAGCACAGTCAGCTTAGCAAGCCAGCACCATACTGCTTCCAGGTCTGTCGCCCTACCCTGGACCTT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000064595.15
ENSMUST00000090834.13
ENSMUST00000101562.11
3UTR CCA 72 bp CAGGGTAGGGCGACAGACCTGGAAGCAGTATGGTGCTaGCTTGCTAAGCTGACTGTGCTAAACAAGATAACC +
Preference number: 3 (lower is better)
Translates to: QGRATDLEAVWC*LAKLTVLNKIT
Trigger: GGTTATCTTGTTTAGCACAGTCAGCTTAGCAAGCCAGCACCATACTGCTTCCAGGTCTGTCGCCCTACCCTG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000064595.15
ENSMUST00000090834.13
ENSMUST00000101562.11
3UTR CCA 72 bp GAATACATGTCTTTAAAGGTGAATGGATGGCATTGGTaGACAAGGTCCAGGGTAGGGCGACAGACCTGGAAG +
Preference number: 3 (lower is better)
Translates to: EYMSLKVNGWHW*TRSRVGRQTWK
Trigger: CTTCCAGGTCTGTCGCCCTACCCTGGACCTTGTCCACCAATGCCATCCATTCACCTTTAAAGACATGTATTC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000064595.15
ENSMUST00000090834.13
ENSMUST00000101562.11
3UTR CCA 72 bp AAGGAATACATGTCTTTAAAGGTGAATGGATGGCATTaGTGGACAAGGTCCAGGGTAGGGCGACAGACCTGG +
Preference number: 3 (lower is better)
Translates to: KEYMSLKVNGWH*WTRSRVGRQTW
Trigger: CCAGGTCTGTCGCCCTACCCTGGACCTTGTCCACCAATGCCATCCATTCACCTTTAAAGACATGTATTCCTT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000064595.15
ENSMUST00000090834.13
ENSMUST00000101562.11
3UTR-3UTR CAA 90 bp TGCTTTCCTTTCAGTTGCTTTCTCTTCTCAGTTTGCAAAGAGCGAGTAACAGGAGGTGAATGGATGGCATaGGTGGACAAGGTCCAGGGT +
Preference number: 3 (lower is better)
Translates to: CFPFSCFLFSVCKERVTGGEWMA*VDKVQG
Trigger: ACCCTGGACCTTGTCCACCAATGCCATCCATTCACC...TCCTGTTACTCGCTCTTTGCAAACTGAGAAGAGAAAGCAACTGAAAGGAAAGCA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000064595.15
ENSMUST00000090834.13
ENSMUST00000101562.11
3UTR GCA 72 bp GTTTTCAGAACAGGACAGTATCATGAAAAGATGGGCTaGCGTATAACACAGTCCGTGAGACTGGCTATGGCT +
Preference number: 3 (lower is better)
Translates to: VFRTGQYHEKMG*RITQSVRLAMA
Trigger: AGCCATAGCCAGTCTCACGGACTGTGTTATACGGCAGCCCATCTTTTCATGATACTGTCCTGTTCTGAAAAC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000050990.10
ENSMUST00000064595.15
ENSMUST00000090834.13
ENSMUST00000101562.11
3UTR CCA 72 bp GTTTCAAAGGAATACATGTCTTTAAAGGTGAATGGATaGCATTGGTGGACAAGGTCCAGGGTAGGGCGACAG +
Preference number: 3 (lower is better)
Translates to: VSKEYMSLKVNG*HWWTRSRVGRQ
Trigger: CTGTCGCCCTACCCTGGACCTTGTCCACCAATGCCATCCATTCACCTTTAAAGACATGTATTCCTTTGAAAC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000064595.15
ENSMUST00000090834.13
ENSMUST00000101562.11
3UTR TCA 72 bp AACTCGACTCTGAGTTTTCAGAACAGGACAGTATCATaGAAAGATGGGCTGCCGTATAACACAGTCCGTGAG +
Preference number: 3 (lower is better)
Translates to: NSTLSFQNRTVS*KDGLPYNTVRE
Trigger: CTCACGGACTGTGTTATACGGCAGCCCATCTTTTCATGATACTGTCCTGTTCTGAAAACTCAGAGTCGAGTT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000050990.10
ENSMUST00000064595.15
ENSMUST00000090834.13
ENSMUST00000101562.11
3UTR-3UTR CAA 90 bp AGGTATGACTGTTCACAACATGGGTCCTACAAACATGCGGGAGATCATGGCAGCAAGAATCCCCCAAATTaGTTTAAGCTGTTTTTAGGC +
Preference number: 3 (lower is better)
Translates to: RYDCSQHGSYKHAGDHGSKNPPN*FKLFLG
Trigger: GCCTAAAAACAGCTTAAACAAATTTGGGGGATTCTT...GCTGCCATGATCTCCCGCATGTTTGTAGGACCCATGTTGTGAACAGTCATACCT
44% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 3 transcripts:
ENSMUST00000064595.15
ENSMUST00000090834.13
ENSMUST00000101562.11
3UTR-3UTR CAA 90 bp CTCAAAATAGCATTCTTGGCTGCAGGTCATTCTCCACCTCAGCAGATCACATTACTCAATCCATTCCTTTaGCTCAAACTCCAGCTTTCG +
Preference number: 3 (lower is better)
Translates to: LKIAFLAAGHSPPQQITLLNPFL*LKLQLS
Trigger: CGAAAGCTGGAGTTTGAGCAAAAGGAATGGATTGAG...TAATGTGATCTGCTGAGGTGGAGAATGACCTGCAGCCAAGAATGCTATTTTGAG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000064595.15
ENSMUST00000090834.13
ENSMUST00000101562.11
3UTR-3UTR CAA 90 bp TTTAGGAGTGATGCGATGGGCTTACATAGTGTAACTGGGATGTTTGGGGGCACTAAGAATCCCCCAAATTaGTTTAAGCTGTTTTTAGGC +
Preference number: 3 (lower is better)
Translates to: FRSDAMGLHSVTGMFGGTKNPPN*FKLFLG
Trigger: GCCTAAAAACAGCTTAAACAAATTTGGGGGATTCTT...AGTGCCCCCAAACATCCCAGTTACACTATGTAAGCCCATCGCATCACTCCTAAA
43% GC, longest homopolymer 5 nt, total homopolymer stretches 15 nt.
Matches the following 3 transcripts:
ENSMUST00000064595.15
ENSMUST00000090834.13
ENSMUST00000101562.11
3UTR-3UTR CAA 90 bp TTTAGGAGTGATGCGATGGGCTTACATAGTGTAACTGGGATGTTTGGGGGCACTCTTGACTACAAACAATaGGATAGGCTAAGTTTCAAG +
Preference number: 3 (lower is better)
Translates to: FRSDAMGLHSVTGMFGGTLDYKQ*DRLSFK
Trigger: CTTGAAACTTAGCCTATCCAATTGTTTGTAGTCAAG...AGTGCCCCCAAACATCCCAGTTACACTATGTAAGCCCATCGCATCACTCCTAAA
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000064595.15
ENSMUST00000090834.13
ENSMUST00000101562.11
3UTR-3UTR CAA 90 bp GACATTCCAGTTTGTCCTGTTTTCCTTGAAAGAAACAAAGAGAGAGCTCTGAGCGTTCAGGCCTTATGCTaGCCTCTTTCATTTCCCATA +
Preference number: 3 (lower is better)
Translates to: DIPVCPVFLERNKERALSVQALC*PLSFPI
Trigger: TATGGGAAATGAAAGAGGCAAGCATAAGGCCTGAAC...GCTCAGAGCTCTCTCTTTGTTTCTTTCAAGGAAAACAGGACAAACTGGAATGTC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000064595.15
ENSMUST00000090834.13
ENSMUST00000101562.11
3UTR-3UTR CAA 90 bp CTCAAAATAGCATTCTTGGCTGCAGGTCATTCTCCACCTCAGCAGATCACATTATTTGTCCTGTTTTCCTaGAAAGAAACAAAGAGAGAG +
Preference number: 3 (lower is better)
Translates to: LKIAFLAAGHSPPQQITLFVLFS*KETKRE
Trigger: CTCTCTCTTTGTTTCTTTCAAGGAAAACAGGACAAA...TAATGTGATCTGCTGAGGTGGAGAATGACCTGCAGCCAAGAATGCTATTTTGAG
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000064595.15
ENSMUST00000090834.13
ENSMUST00000101562.11
3UTR-3UTR CAA 90 bp CCATATCCTAACCACGGCTCTTACCTGTGCTTAATGTTATTAAGTAGAGGTATGAAGAATCCCCCAAATTaGTTTAAGCTGTTTTTAGGC +
Preference number: 3 (lower is better)
Translates to: PYPNHGSYLCLMLLSRGMKNPPN*FKLFLG
Trigger: GCCTAAAAACAGCTTAAACAAATTTGGGGGATTCTT...CATACCTCTACTTAATAACATTAAGCACAGGTAAGAGCCGTGGTTAGGATATGG
39% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 3 transcripts:
ENSMUST00000064595.15
ENSMUST00000090834.13
ENSMUST00000101562.11
3UTR GCA 72 bp ATTGAATATCATACATCTCAAAATAGCATTCTTGGCTaGAGGTCATTCTCCACCTCAGCAGATCACATTAGT +
Preference number: 3 (lower is better)
Translates to: IEYHTSQNSILG*RSFSTSADHIS
Trigger: ACTAATGTGATCTGCTGAGGTGGAGAATGACCTGCAGCCAAGAATGCTATTTTGAGATGTATGATATTCAAT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000064595.15
ENSMUST00000090834.13
ENSMUST00000101562.11
CDS-3UTR GCA 90 bp TGTGGCCCGCACCACATATTCTACCTGTGTGACGGGATGCTGAACGAGGCAAATATGGGTGCTGGGGGCTaGAGGGCCATGGCGTTGGAC +
Preference number: 4 (lower is better)
Translates to: CGPHHIFYLCDGMLNEANMGAGG*RAMALD
Trigger: GTCCAACGCCATGGCCCTGCAGCCCCCAGCACCCAT...ATTTGCCTCGTTCAGCATCCCGTCACACAGGTAGAATATGTGGTGCGGGCCACA
59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000064595.15
ENSMUST00000090834.13
ENSMUST00000101562.11
CDS-3UTR CCA 90 bp TGTGGCCCGCACCACATATTCTACCTGTGTGACGGGATGCTGAACGAGGCAAATGCCTCGCAAAGGCTGTaGAGCTTCGCCGCGGTGTCG +
Preference number: 4 (lower is better)
Translates to: CGPHHIFYLCDGMLNEANASQRL*SFAAVS
Trigger: CGACACCGCGGCGAAGCTCCACAGCCTTTGCGAGGC...ATTTGCCTCGTTCAGCATCCCGTCACACAGGTAGAATATGTGGTGCGGGCCACA
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000064595.15
ENSMUST00000090834.13
ENSMUST00000101562.11
CDS-3UTR CCA 90 bp TGTGGCCCGCACCACATATTCTACCTGTGTGACGGGATGCTGAACGAGGCAAATGGGGGCAGCGGTGGGTaGACAGCTGGCAGATCTGAC +
Preference number: 4 (lower is better)
Translates to: CGPHHIFYLCDGMLNEANGGSGG*TAGRSD
Trigger: GTCAGATCTGCCAGCTGTCCACCCACCGCTGCCCCC...ATTTGCCTCGTTCAGCATCCCGTCACACAGGTAGAATATGTGGTGCGGGCCACA
59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000064595.15
CDS-3UTR CCA 90 bp TTTAGGAGTGATGCGATGGGCTTACATAGTGTAACTGGGATGTTTGGGGGCACTAGGCAGGCGGCTGGGTaGCTGAGGTGGCAGGGGCGG +
Preference number: 4 (lower is better)
Translates to: FRSDAMGLHSVTGMFGGTRQAAG*LRWQGR
Trigger: CCGCCCCTGCCACCTCAGCCACCCAGCCGCCTGCCT...AGTGCCCCCAAACATCCCAGTTACACTATGTAAGCCCATCGCATCACTCCTAAA
59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000064595.15
ENSMUST00000090834.13
ENSMUST00000101562.11
CDS-3UTR CCA 90 bp CGTTCAGGCCTTATGCTTGCCTCTTTCATTTCCCATATCCTAACCACGGCTCTTAGGCAGGCGGCTGGGTaGCTGAGGTGGCAGGGGCGG +
Preference number: 4 (lower is better)
Translates to: RSGLMLASFISHILTTALRQAAG*LRWQGR
Trigger: CCGCCCCTGCCACCTCAGCCACCCAGCCGCCTGCCT...AAGAGCCGTGGTTAGGATATGGGAAATGAAAGAGGCAAGCATAAGGCCTGAACG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000064595.15
ENSMUST00000090834.13
ENSMUST00000101562.11
CDS-3UTR CCA 90 bp CCGCACCACATATTCTACCTGTGTGACGGGATGCTGAACGAGGCAAATCCTCAACCTAGGCATGGGTGCTaGGGGCTGCAGGGCCATGGC +
Preference number: 4 (lower is better)
Translates to: PHHIFYLCDGMLNEANPQPRHGC*GLQGHG
Trigger: GCCATGGCCCTGCAGCCCCCAGCACCCATGCCTAGG...TTGAGGATTTGCCTCGTTCAGCATCCCGTCACACAGGTAGAATATGTGGTGCGG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000064595.15
ENSMUST00000090834.13
ENSMUST00000101562.11
CDS-3UTR CCA 90 bp GCTTACTGTGGCCCGCACCACATATTCTACCTGTGTGACGGGATGCTGAACGAGAGCCACAGGAGGGGGTaGTGTGGTGGTCAGGGGATC +
Preference number: 4 (lower is better)
Translates to: AYCGPHHIFYLCDGMLNESHRRG*CGGQGI
Trigger: GATCCCCTGACCACCACACCACCCCCTCCTGTGGCT...CTCGTTCAGCATCCCGTCACACAGGTAGAATATGTGGTGCGGGCCACAGTAAGC
59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000090834.13
ENSMUST00000101562.11
CDS-3UTR TCA 90 bp TGTGGCCCGCACCACATATTCTACCTGTGTGACGGGATGCTGAACGAGGCAAATCGCCCCGACAAGGCCTaGGTGAGCAGTTCCTCACAG +
Preference number: 4 (lower is better)
Translates to: CGPHHIFYLCDGMLNEANRPDKA*VSSSSQ
Trigger: CTGTGAGGAACTGCTCACTCAGGCCTTGTCGGGGCG...ATTTGCCTCGTTCAGCATCCCGTCACACAGGTAGAATATGTGGTGCGGGCCACA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000064595.15
ENSMUST00000090834.13
ENSMUST00000101562.11
CDS-3UTR TCA 90 bp GCTTACTGTGGCCCGCACCACATATTCTACCTGTGTGACGGGATGCTGAACGAGCATCCTGGGCCTGTTTaGTGGTGTGGAGGTCCGTGG +
Preference number: 4 (lower is better)
Translates to: AYCGPHHIFYLCDGMLNEHPGPV*WCGGPW
Trigger: CCACGGACCTCCACACCATCAAACAGGCCCAGGATG...CTCGTTCAGCATCCCGTCACACAGGTAGAATATGTGGTGCGGGCCACAGTAAGC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000090834.13
ENSMUST00000101562.11
CDS-3UTR GCA 90 bp TTACATAGTGTAACTGGGATGTTTGGGGGCACTGGGCTCCCCAAGGTCTACAGAGGGAGGAGGGCGGGCTaGCACTCAGGATGGCTCCAT +
Preference number: 4 (lower is better)
Translates to: LHSVTGMFGGTGLPKVYRGRRAG*HSGWLH
Trigger: ATGGAGCCATCCTGAGTGGCAGCCCGCCCTCCTCCC...TCTGTAGACCTTGGGGAGCCCAGTGCCCCCAAACATCCCAGTTACACTATGTAA
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000064595.15
ENSMUST00000090834.13
ENSMUST00000101562.11
CDS-3UTR CCA 90 bp TTACATAGTGTAACTGGGATGTTTGGGGGCACTGGGCTCCCCAAGGTCTACAGAACGGTGTTCCGGCACTaGGCCGTGCGCGTGGTGAAG +
Preference number: 4 (lower is better)
Translates to: LHSVTGMFGGTGLPKVYRTVFRH*AVRVVK
Trigger: CTTCACCACGCGCACGGCCCAGTGCCGGAACACCGT...TCTGTAGACCTTGGGGAGCCCAGTGCCCCCAAACATCCCAGTTACACTATGTAA
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000064595.15
ENSMUST00000090834.13
ENSMUST00000101562.11
CDS-3UTR CCA 90 bp AGGTATGACTGTTCACAACATGGGTCCTACAAACATGCGGGAGATCATGGCAGCCCTAGGCATGGGTGCTaGGGGCTGCAGGGCCATGGC +
Preference number: 4 (lower is better)
Translates to: RYDCSQHGSYKHAGDHGSPRHGC*GLQGHG
Trigger: GCCATGGCCCTGCAGCCCCCAGCACCCATGCCTAGG...GCTGCCATGATCTCCCGCATGTTTGTAGGACCCATGTTGTGAACAGTCATACCT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000064595.15
ENSMUST00000090834.13
ENSMUST00000101562.11
CDS-3UTR TCA 90 bp TTACATAGTGTAACTGGGATGTTTGGGGGCACTGGGCTCCCCAAGGTCTACAGAGGCAGGTTAGCAGGTTaGGCTTGGCAGGTGGCCGGT +
Preference number: 4 (lower is better)
Translates to: LHSVTGMFGGTGLPKVYRGRLAG*AWQVAG
Trigger: ACCGGCCACCTGCCAAGCTCAACCTGCTAACCTGCC...TCTGTAGACCTTGGGGAGCCCAGTGCCCCCAAACATCCCAGTTACACTATGTAA
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000064595.15
ENSMUST00000101562.11
CDS-3UTR TCA 90 bp CCGCACCACATATTCTACCTGTGTGACGGGATGCTGAACGAGGCAAATCCTCAACGCCCCGACAAGGCCTaGGTGAGCAGTTCCTCACAG +
Preference number: 4 (lower is better)
Translates to: PHHIFYLCDGMLNEANPQRPDKA*VSSSSQ
Trigger: CTGTGAGGAACTGCTCACTCAGGCCTTGTCGGGGCG...TTGAGGATTTGCCTCGTTCAGCATCCCGTCACACAGGTAGAATATGTGGTGCGG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000064595.15
ENSMUST00000090834.13
ENSMUST00000101562.11
CDS-3UTR TCA 90 bp GTTTGGGGGCACTGGGCTCCCCAAGGTCTACAGATTTCTGATATGTTCTTGACTCGGGGGCTTGCTCTGTaGGGTCCCAGGTTGGGAGGA +
Preference number: 4 (lower is better)
Translates to: VWGHWAPQGLQISDMFLTRGLAL*GPRLGG
Trigger: TCCTCCCAACCTGGGACCTCACAGAGCAAGCCCCCG...AGTCAAGAACATATCAGAAATCTGTAGACCTTGGGGAGCCCAGTGCCCCCAAAC
57% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 3 transcripts:
ENSMUST00000064595.15
ENSMUST00000090834.13
ENSMUST00000101562.11
CDS-3UTR GCA 90 bp AGGTATGACTGTTCACAACATGGGTCCTACAAACATGCGGGAGATCATGGCAGCGGGAGGAGGGCGGGCTaGCACTCAGGATGGCTCCAT +
Preference number: 4 (lower is better)
Translates to: RYDCSQHGSYKHAGDHGSGRRAG*HSGWLH
Trigger: ATGGAGCCATCCTGAGTGGCAGCCCGCCCTCCTCCC...GCTGCCATGATCTCCCGCATGTTTGTAGGACCCATGTTGTGAACAGTCATACCT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000064595.15
ENSMUST00000090834.13
ENSMUST00000101562.11
CDS-3UTR GCA 90 bp ATGTCTTTAAAGGTGAATGGATGGCATTGGTGGACAAGGTCCAGGGTAGGGCGAGCAGGGGCGGGGGCTTaGTCTGTGAGGTCCCAGGTT +
Preference number: 4 (lower is better)
Translates to: MSLKVNGWHWWTRSRVGRAGAGA*SVRSQV
Trigger: AACCTGGGACCTCACAGAGCAAGCCCCCGCCCCTGC...TCGCCCTACCCTGGACCTTGTCCACCAATGCCATCCATTCACCTTTAAAGACAT
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000064595.15
ENSMUST00000090834.13
ENSMUST00000101562.11
CDS-3UTR CCA 90 bp ATGTCTTTAAAGGTGAATGGATGGCATTGGTGGACAAGGTCCAGGGTAGGGCGAACGGTGTTCCGGCACTaGGCCGTGCGCGTGGTGAAG +
Preference number: 4 (lower is better)
Translates to: MSLKVNGWHWWTRSRVGRTVFRH*AVRVVK
Trigger: CTTCACCACGCGCACGGCCCAGTGCCGGAACACCGT...TCGCCCTACCCTGGACCTTGTCCACCAATGCCATCCATTCACCTTTAAAGACAT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000064595.15
ENSMUST00000090834.13
ENSMUST00000101562.11
CDS-3UTR CCA 90 bp ATGTCTTTAAAGGTGAATGGATGGCATTGGTGGACAAGGTCCAGGGTAGGGCGAGCCTCGCAAAGGCTGTaGAGCTTCGCCGCGGTGTCG +
Preference number: 4 (lower is better)
Translates to: MSLKVNGWHWWTRSRVGRASQRL*SFAAVS
Trigger: CGACACCGCGGCGAAGCTCCACAGCCTTTGCGAGGC...TCGCCCTACCCTGGACCTTGTCCACCAATGCCATCCATTCACCTTTAAAGACAT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000064595.15
ENSMUST00000090834.13
ENSMUST00000101562.11
CDS-3UTR CCA 90 bp CCGCACCACATATTCTACCTGTGTGACGGGATGCTGAACGAGGCAAATCCTCAAGTGCGCTGGTGGTGCTaGGGGGTATTGACTGGGAGG +
Preference number: 4 (lower is better)
Translates to: PHHIFYLCDGMLNEANPQVRWWC*GVLTGR
Trigger: CCTCCCAGTCAATACCCCCCAGCACCACCAGCGCAC...TTGAGGATTTGCCTCGTTCAGCATCCCGTCACACAGGTAGAATATGTGGTGCGG
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000064595.15
ENSMUST00000090834.13
ENSMUST00000101562.11
CDS-3UTR TCA 90 bp GCTTACTGTGGCCCGCACCACATATTCTACCTGTGTGACGGGATGCTGAACGAGAAGATCGCTGCCTGCTaGTACCGTCCACACCTACAG +
Preference number: 4 (lower is better)
Translates to: AYCGPHHIFYLCDGMLNEKIAAC*YRPHLQ
Trigger: CTGTAGGTGTGGACGGTATCAGCAGGCAGCGATCTT...CTCGTTCAGCATCCCGTCACACAGGTAGAATATGTGGTGCGGGCCACAGTAAGC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000064595.15
CDS-3UTR TCA 90 bp TTTAGGAGTGATGCGATGGGCTTACATAGTGTAACTGGGATGTTTGGGGGCACTCGGGGGCTTGCTCTGTaGGGTCCCAGGTTGGGAGGA +
Preference number: 4 (lower is better)
Translates to: FRSDAMGLHSVTGMFGGTRGLAL*GPRLGG
Trigger: TCCTCCCAACCTGGGACCTCACAGAGCAAGCCCCCG...AGTGCCCCCAAACATCCCAGTTACACTATGTAAGCCCATCGCATCACTCCTAAA
56% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 3 transcripts:
ENSMUST00000064595.15
ENSMUST00000090834.13
ENSMUST00000101562.11
CDS-3UTR GCA 90 bp GCTTACTGTGGCCCGCACCACATATTCTACCTGTGTGACGGGATGCTGAACGAGTCCCAGAGCACTCGATaGAAGTCAGGATGCCCAGGT +
Preference number: 4 (lower is better)
Translates to: AYCGPHHIFYLCDGMLNESQSTR*KSGCPG
Trigger: ACCTGGGCATCCTGACTTGCATCGAGTGCTCTGGGA...CTCGTTCAGCATCCCGTCACACAGGTAGAATATGTGGTGCGGGCCACAGTAAGC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000064595.15
ENSMUST00000101562.11
CDS-3UTR GCA 90 bp CGTTCAGGCCTTATGCTTGCCTCTTTCATTTCCCATATCCTAACCACGGCTCTTATGGGTGCTGGGGGCTaGAGGGCCATGGCGTTGGAC +
Preference number: 4 (lower is better)
Translates to: RSGLMLASFISHILTTALMGAGG*RAMALD
Trigger: GTCCAACGCCATGGCCCTGCAGCCCCCAGCACCCAT...AAGAGCCGTGGTTAGGATATGGGAAATGAAAGAGGCAAGCATAAGGCCTGAACG
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000064595.15
ENSMUST00000090834.13
ENSMUST00000101562.11
CDS-3UTR GCA 90 bp CCGCACCACATATTCTACCTGTGTGACGGGATGCTGAACGAGGCAAATCCTCAACGGGAAACGCTCCTTTaGGGCTGGGCTCTCCATCGA +
Preference number: 4 (lower is better)
Translates to: PHHIFYLCDGMLNEANPQRETLL*GWALHR
Trigger: TCGATGGAGAGCCCAGCCGCAAAGGAGCGTTTCCCG...TTGAGGATTTGCCTCGTTCAGCATCCCGTCACACAGGTAGAATATGTGGTGCGG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000064595.15
ENSMUST00000090834.13
ENSMUST00000101562.11
CDS-3UTR CCA 90 bp AGGTATGACTGTTCACAACATGGGTCCTACAAACATGCGGGAGATCATGGCAGCGTGCGCTGGTGGTGCTaGGGGGTATTGACTGGGAGG +
Preference number: 4 (lower is better)
Translates to: RYDCSQHGSYKHAGDHGSVRWWC*GVLTGR
Trigger: CCTCCCAGTCAATACCCCCCAGCACCACCAGCGCAC...GCTGCCATGATCTCCCGCATGTTTGTAGGACCCATGTTGTGAACAGTCATACCT
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000064595.15
ENSMUST00000090834.13
ENSMUST00000101562.11
CDS-3UTR CCA 90 bp TTTAGGAGTGATGCGATGGGCTTACATAGTGTAACTGGGATGTTTGGGGGCACTGCCAACATTCCGAGGTaGGAGCGGGGGTGCGCTGGT +
Preference number: 4 (lower is better)
Translates to: FRSDAMGLHSVTGMFGGTANIPR*ERGCAG
Trigger: ACCAGCGCACCCCCGCTCCCACCTCGGAATGTTGGC...AGTGCCCCCAAACATCCCAGTTACACTATGTAAGCCCATCGCATCACTCCTAAA
56% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 3 transcripts:
ENSMUST00000064595.15
ENSMUST00000090834.13
ENSMUST00000101562.11
CDS-3UTR CCA 90 bp TTGTTTAAGCTGTTTTTAGGCTCAGCTACTCCTGGAAATACAGGATCCTGGGTAAGGCAGGCGGCTGGGTaGCTGAGGTGGCAGGGGCGG +
Preference number: 4 (lower is better)
Translates to: LFKLFLGSATPGNTGSWVRQAAG*LRWQGR
Trigger: CCGCCCCTGCCACCTCAGCCACCCAGCCGCCTGCCT...TACCCAGGATCCTGTATTTCCAGGAGTAGCTGAGCCTAAAAACAGCTTAAACAA
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000050990.10
ENSMUST00000064595.15
ENSMUST00000090834.13
ENSMUST00000101562.11
CDS-3UTR CCA 90 bp CTCAGCTACTCCTGGAAATACAGGATCCTGGGTATACAGTTAAATAGCTTCTCAAGGCAGGCGGCTGGGTaGCTGAGGTGGCAGGGGCGG +
Preference number: 4 (lower is better)
Translates to: LSYSWKYRILGIQLNSFSRQAAG*LRWQGR
Trigger: CCGCCCCTGCCACCTCAGCCACCCAGCCGCCTGCCT...TGAGAAGCTATTTAACTGTATACCCAGGATCCTGTATTTCCAGGAGTAGCTGAG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000050990.10
ENSMUST00000064595.15
ENSMUST00000090834.13
ENSMUST00000101562.11
CDS-3UTR TCA 90 bp AGGTATGACTGTTCACAACATGGGTCCTACAAACATGCGGGAGATCATGGCAGCTGCCTGGGTTGGGCTTaGCTGGGTCCTCAGACGGTA +
Preference number: 4 (lower is better)
Translates to: RYDCSQHGSYKHAGDHGSCLGWA*LGPQTV
Trigger: TACCGTCTGAGGACCCAGTCAAGCCCAACCCAGGCA...GCTGCCATGATCTCCCGCATGTTTGTAGGACCCATGTTGTGAACAGTCATACCT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000064595.15
ENSMUST00000090834.13
ENSMUST00000101562.11
CDS-3UTR TCA 90 bp CGTTCAGGCCTTATGCTTGCCTCTTTCATTTCCCATATCCTAACCACGGCTCTTCGCCCCGACAAGGCCTaGGTGAGCAGTTCCTCACAG +
Preference number: 4 (lower is better)
Translates to: RSGLMLASFISHILTTALRPDKA*VSSSSQ
Trigger: CTGTGAGGAACTGCTCACTCAGGCCTTGTCGGGGCG...AAGAGCCGTGGTTAGGATATGGGAAATGAAAGAGGCAAGCATAAGGCCTGAACG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000064595.15
ENSMUST00000090834.13
ENSMUST00000101562.11
CDS-3UTR TCA 90 bp GCTTACTGTGGCCCGCACCACATATTCTACCTGTGTGACGGGATGCTGAACGAGGCTGAGGTGGCTGTCTaGACTTTGCCAACATTCCGA +
Preference number: 4 (lower is better)
Translates to: AYCGPHHIFYLCDGMLNEAEVAV*TLPTFR
Trigger: TCGGAATGTTGGCAAAGTTCAGACAGCCACCTCAGC...CTCGTTCAGCATCCCGTCACACAGGTAGAATATGTGGTGCGGGCCACAGTAAGC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000064595.15
CDS-3UTR TCA 90 bp TTTAGGAGTGATGCGATGGGCTTACATAGTGTAACTGGGATGTTTGGGGGCACTGAAGCTGGTTTCTTCTaGGGCAGGCGGCTGGGTGGC +
Preference number: 4 (lower is better)
Translates to: FRSDAMGLHSVTGMFGGTEAGFF*GRRLGG
Trigger: GCCACCCAGCCGCCTGCCTCAGAAGAAACCAGCTTC...AGTGCCCCCAAACATCCCAGTTACACTATGTAAGCCCATCGCATCACTCCTAAA
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000064595.15
ENSMUST00000090834.13
ENSMUST00000101562.11
CDS-3UTR TCA 90 bp CGTTCAGGCCTTATGCTTGCCTCTTTCATTTCCCATATCCTAACCACGGCTCTTGAAGCTGGTTTCTTCTaGGGCAGGCGGCTGGGTGGC +
Preference number: 4 (lower is better)
Translates to: RSGLMLASFISHILTTALEAGFF*GRRLGG
Trigger: GCCACCCAGCCGCCTGCCTCAGAAGAAACCAGCTTC...AAGAGCCGTGGTTAGGATATGGGAAATGAAAGAGGCAAGCATAAGGCCTGAACG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000064595.15
ENSMUST00000090834.13
ENSMUST00000101562.11
CDS-3UTR GCA 90 bp CCGCACCACATATTCTACCTGTGTGACGGGATGCTGAACGAGGCAAATCCTCAACGCAGCACACGTCATTaGCCGTCATCCTCTGCACCT +
Preference number: 4 (lower is better)
Translates to: PHHIFYLCDGMLNEANPQRSTRH*PSSSAP
Trigger: AGGTGCAGAGGATGACGGGCAATGACGTGTGCTGCG...TTGAGGATTTGCCTCGTTCAGCATCCCGTCACACAGGTAGAATATGTGGTGCGG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000064595.15
ENSMUST00000101562.11
CDS-3UTR CCA 90 bp GCTTACTGTGGCCCGCACCACATATTCTACCTGTGTGACGGGATGCTGAACGAGTCAGGGACTGCATCCTaGAGTAATGAACCCCCAGCT +
Preference number: 4 (lower is better)
Translates to: AYCGPHHIFYLCDGMLNESGTAS*SNEPPA
Trigger: AGCTGGGGGTTCATTACTCCAGGATGCAGTCCCTGA...CTCGTTCAGCATCCCGTCACACAGGTAGAATATGTGGTGCGGGCCACAGTAAGC
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000064595.15
ENSMUST00000101562.11
CDS-3UTR CCA 90 bp AGGTATGACTGTTCACAACATGGGTCCTACAAACATGCGGGAGATCATGGCAGCGCAGGGCCATGGCGTTaGACAGAGGACCCGAAGCTT +
Preference number: 4 (lower is better)
Translates to: RYDCSQHGSYKHAGDHGSAGPWR*TEDPKL
Trigger: AAGCTTCGGGTCCTCTGTCCAACGCCATGGCCCTGC...GCTGCCATGATCTCCCGCATGTTTGTAGGACCCATGTTGTGAACAGTCATACCT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000064595.15
ENSMUST00000090834.13
ENSMUST00000101562.11
CDS-3UTR CCA 90 bp AAGCTGTTTTTAGGCTCAGCTACTCCTGGAAATACAGGATCCTGGGTATACAGTCCTAGGCATGGGTGCTaGGGGCTGCAGGGCCATGGC +
Preference number: 4 (lower is better)
Translates to: KLFLGSATPGNTGSWVYSPRHGC*GLQGHG
Trigger: GCCATGGCCCTGCAGCCCCCAGCACCCATGCCTAGG...ACTGTATACCCAGGATCCTGTATTTCCAGGAGTAGCTGAGCCTAAAAACAGCTT
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000050990.10
ENSMUST00000064595.15
ENSMUST00000090834.13
ENSMUST00000101562.11
CDS-3UTR CCA 90 bp GCTTACTGTGGCCCGCACCACATATTCTACCTGTGTGACGGGATGCTGAACGAGGTGCTTTCACTCGCTTaGGCTTTGACTTGGTCGCCT +
Preference number: 4 (lower is better)
Translates to: AYCGPHHIFYLCDGMLNEVLSLA*ALTWSP
Trigger: AGGCGACCAAGTCAAAGCCCAAGCGAGTGAAAGCAC...CTCGTTCAGCATCCCGTCACACAGGTAGAATATGTGGTGCGGGCCACAGTAAGC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000064595.15
ENSMUST00000090834.13
ENSMUST00000101562.11
CDS-3UTR CCA 90 bp CCGCACCACATATTCTACCTGTGTGACGGGATGCTGAACGAGGCAAATCCTCAACGCCGTTCCTCATCCTaGGCCTGTTTGATGGTGTGG +
Preference number: 4 (lower is better)
Translates to: PHHIFYLCDGMLNEANPQRRSSS*ACLMVW
Trigger: CCACACCATCAAACAGGCCCAGGATGAGGAACGGCG...TTGAGGATTTGCCTCGTTCAGCATCCCGTCACACAGGTAGAATATGTGGTGCGG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000090834.13
ENSMUST00000101562.11
CDS-3UTR TCA 90 bp TGTGGCCCGCACCACATATTCTACCTGTGTGACGGGATGCTGAACGAGGCAAATCCACAGGGTGTTAGCTaGGGTGGCTGTCTGAACTTT +
Preference number: 4 (lower is better)
Translates to: CGPHHIFYLCDGMLNEANPQGVS*GGCLNF
Trigger: AAAGTTCAGACAGCCACCTCAGCTAACACCCTGTGG...ATTTGCCTCGTTCAGCATCCCGTCACACAGGTAGAATATGTGGTGCGGGCCACA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000064595.15
CDS-3UTR TCA 90 bp GTTTGGGGGCACTGGGCTCCCCAAGGTCTACAGATTTCTGATATGTTCTTGACTCCGATCCACCACTCCTaGTCCTCTTCCCCATCCACA +
Preference number: 4 (lower is better)
Translates to: VWGHWAPQGLQISDMFLTPIHHS*SSSPST
Trigger: TGTGGATGGGGAAGAGGATCAGGAGTGGTGGATCGG...AGTCAAGAACATATCAGAAATCTGTAGACCTTGGGGAGCCCAGTGCCCCCAAAC
53% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000064595.15
ENSMUST00000090834.13
ENSMUST00000101562.11
CDS-3UTR GCA 90 bp GCTTACTGTGGCCCGCACCACATATTCTACCTGTGTGACGGGATGCTGAACGAGCTTCTCCATCTCCTCTaGAATCTCAGCCCCGCTTAT +
Preference number: 4 (lower is better)
Translates to: AYCGPHHIFYLCDGMLNELLHLL*NLSPAY
Trigger: ATAAGCGGGGCTGAGATTGCAGAGGAGATGGAGAAG...CTCGTTCAGCATCCCGTCACACAGGTAGAATATGTGGTGCGGGCCACAGTAAGC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000064595.15
ENSMUST00000090834.13
ENSMUST00000101562.11
CDS-3UTR GCA 90 bp TTACATAGTGTAACTGGGATGTTTGGGGGCACTGGGCTCCCCAAGGTCTACAGAGGCCCAAAGCCCCTCTaGTTGTCCTTGGTGAGGTTT +
Preference number: 4 (lower is better)
Translates to: LHSVTGMFGGTGLPKVYRGPKPL*LSLVRF
Trigger: AAACCTCACCAAGGACAAGCAGAGGGGCTTTGGGCC...TCTGTAGACCTTGGGGAGCCCAGTGCCCCCAAACATCCCAGTTACACTATGTAA
53% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000064595.15
ENSMUST00000090834.13
ENSMUST00000101562.11
CDS-3UTR GCA 90 bp TGTGGCCCGCACCACATATTCTACCTGTGTGACGGGATGCTGAACGAGGCAAATTCTCATTCTGCAAGATaGTGGGCCCAAAGCCCCTCT +
Preference number: 4 (lower is better)
Translates to: CGPHHIFYLCDGMLNEANSHSAR*WAQSPS
Trigger: AGAGGGGCTTTGGGCCCAGCATCTTGCAGAATGAGA...ATTTGCCTCGTTCAGCATCCCGTCACACAGGTAGAATATGTGGTGCGGGCCACA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000064595.15
ENSMUST00000090834.13
ENSMUST00000101562.11
CDS-3UTR GCA 90 bp AAGCTGTTTTTAGGCTCAGCTACTCCTGGAAATACAGGATCCTGGGTATACAGTGCAGGGGCGGGGGCTTaGTCTGTGAGGTCCCAGGTT +
Preference number: 4 (lower is better)
Translates to: KLFLGSATPGNTGSWVYSAGAGA*SVRSQV
Trigger: AACCTGGGACCTCACAGAGCAAGCCCCCGCCCCTGC...ACTGTATACCCAGGATCCTGTATTTCCAGGAGTAGCTGAGCCTAAAAACAGCTT
53% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 4 transcripts:
ENSMUST00000050990.10
ENSMUST00000064595.15
ENSMUST00000090834.13
ENSMUST00000101562.11
CDS-3UTR GCA 90 bp CTCAAAATAGCATTCTTGGCTGCAGGTCATTCTCCACCTCAGCAGATCACATTAGCAGGGGCGGGGGCTTaGTCTGTGAGGTCCCAGGTT +
Preference number: 4 (lower is better)
Translates to: LKIAFLAAGHSPPQQITLAGAGA*SVRSQV
Trigger: AACCTGGGACCTCACAGAGCAAGCCCCCGCCCCTGC...TAATGTGATCTGCTGAGGTGGAGAATGACCTGCAGCCAAGAATGCTATTTTGAG
53% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000064595.15
ENSMUST00000090834.13
ENSMUST00000101562.11
CDS-3UTR CCA 90 bp GCTTACTGTGGCCCGCACCACATATTCTACCTGTGTGACGGGATGCTGAACGAGCCAAAGACACAGCATTaGACTGAAACTGGCTGGACC +
Preference number: 4 (lower is better)
Translates to: AYCGPHHIFYLCDGMLNEPKTQH*TETGWT
Trigger: GGTCCAGCCAGTTTCAGTCCAATGCTGTGTCTTTGG...CTCGTTCAGCATCCCGTCACACAGGTAGAATATGTGGTGCGGGCCACAGTAAGC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000064595.15
ENSMUST00000090834.13
ENSMUST00000101562.11
CDS-3UTR CCA 90 bp CTCAAAATAGCATTCTTGGCTGCAGGTCATTCTCCACCTCAGCAGATCACATTAGCCAACATTCCGAGGTaGGAGCGGGGGTGCGCTGGT +
Preference number: 4 (lower is better)
Translates to: LKIAFLAAGHSPPQQITLANIPR*ERGCAG
Trigger: ACCAGCGCACCCCCGCTCCCACCTCGGAATGTTGGC...TAATGTGATCTGCTGAGGTGGAGAATGACCTGCAGCCAAGAATGCTATTTTGAG
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000064595.15
ENSMUST00000090834.13
ENSMUST00000101562.11
CDS-3UTR CCA 90 bp GACATTCCAGTTTGTCCTGTTTTCCTTGAAAGAAACAAAGAGAGAGCTCTGAGCTCTGAGGCAGGCGGCTaGGTGGCTGAGGTGGCAGGG +
Preference number: 4 (lower is better)
Translates to: DIPVCPVFLERNKERALSSEAGG*VAEVAG
Trigger: CCCTGCCACCTCAGCCACCCAGCCGCCTGCCTCAGA...GCTCAGAGCTCTCTCTTTGTTTCTTTCAAGGAAAACAGGACAAACTGGAATGTC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000064595.15
ENSMUST00000090834.13
ENSMUST00000101562.11
CDS-3UTR CCA 90 bp CTCAGCTACTCCTGGAAATACAGGATCCTGGGTATACAGTTAAATAGCTTCTCATCTGAGGCAGGCGGCTaGGTGGCTGAGGTGGCAGGG +
Preference number: 4 (lower is better)
Translates to: LSYSWKYRILGIQLNSFSSEAGG*VAEVAG
Trigger: CCCTGCCACCTCAGCCACCCAGCCGCCTGCCTCAGA...TGAGAAGCTATTTAACTGTATACCCAGGATCCTGTATTTCCAGGAGTAGCTGAG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000050990.10
ENSMUST00000064595.15
ENSMUST00000090834.13
ENSMUST00000101562.11
CDS-3UTR CCA 90 bp TTTAGGAGTGATGCGATGGGCTTACATAGTGTAACTGGGATGTTTGGGGGCACTCAGGAGGGGGTGGTGTaGTGGTCAGGGGATCTTTGC +
Preference number: 4 (lower is better)
Translates to: FRSDAMGLHSVTGMFGGTQEGVV*WSGDLC
Trigger: GCAAAGATCCCCTGACCACCACACCACCCCCTCCTG...AGTGCCCCCAAACATCCCAGTTACACTATGTAAGCCCATCGCATCACTCCTAAA
53% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 2 transcripts:
ENSMUST00000090834.13
ENSMUST00000101562.11
CDS-3UTR TCA 90 bp CGTTCAGGCCTTATGCTTGCCTCTTTCATTTCCCATATCCTAACCACGGCTCTTTCCGGTCCACAGATCTaGCTGCAAGATGGAGGGCTG +
Preference number: 4 (lower is better)
Translates to: RSGLMLASFISHILTTALSGPQI*LQDGGL
Trigger: CAGCCCTCCATCTTGCAGTCAGATCTGTGGACCGGA...AAGAGCCGTGGTTAGGATATGGGAAATGAAAGAGGCAAGCATAAGGCCTGAACG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000064595.15
ENSMUST00000090834.13
ENSMUST00000101562.11
CDS-3UTR TCA 90 bp TTGTTTAAGCTGTTTTTAGGCTCAGCTACTCCTGGAAATACAGGATCCTGGGTACGGGGGCTTGCTCTGTaGGGTCCCAGGTTGGGAGGA +
Preference number: 4 (lower is better)
Translates to: LFKLFLGSATPGNTGSWVRGLAL*GPRLGG
Trigger: TCCTCCCAACCTGGGACCTCACAGAGCAAGCCCCCG...TACCCAGGATCCTGTATTTCCAGGAGTAGCTGAGCCTAAAAACAGCTTAAACAA
52% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 4 transcripts:
ENSMUST00000050990.10
ENSMUST00000064595.15
ENSMUST00000090834.13
ENSMUST00000101562.11
CDS-3UTR TCA 90 bp CTCAGCTACTCCTGGAAATACAGGATCCTGGGTATACAGTTAAATAGCTTCTCACGGGGGCTTGCTCTGTaGGGTCCCAGGTTGGGAGGA +
Preference number: 4 (lower is better)
Translates to: LSYSWKYRILGIQLNSFSRGLAL*GPRLGG
Trigger: TCCTCCCAACCTGGGACCTCACAGAGCAAGCCCCCG...TGAGAAGCTATTTAACTGTATACCCAGGATCCTGTATTTCCAGGAGTAGCTGAG
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000050990.10
ENSMUST00000064595.15
ENSMUST00000090834.13
ENSMUST00000101562.11
CDS-3UTR GCA 90 bp TGTGGCCCGCACCACATATTCTACCTGTGTGACGGGATGCTGAACGAGGCAAATCTTCTCCATCTCCTCTaGAATCTCAGCCCCGCTTAT +
Preference number: 4 (lower is better)
Translates to: CGPHHIFYLCDGMLNEANLLHLL*NLSPAY
Trigger: ATAAGCGGGGCTGAGATTGCAGAGGAGATGGAGAAG...ATTTGCCTCGTTCAGCATCCCGTCACACAGGTAGAATATGTGGTGCGGGCCACA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000064595.15
ENSMUST00000090834.13
ENSMUST00000101562.11
CDS-3UTR GCA 90 bp ATGTCTTTAAAGGTGAATGGATGGCATTGGTGGACAAGGTCCAGGGTAGGGCGATTGCCCGTCATCCTCTaGACCTCCGAGATGATCTCC +
Preference number: 4 (lower is better)
Translates to: MSLKVNGWHWWTRSRVGRLPVIL*TSEMIS
Trigger: GGAGATCATCTCGGAGGTGCAGAGGATGACGGGCAA...TCGCCCTACCCTGGACCTTGTCCACCAATGCCATCCATTCACCTTTAAAGACAT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000064595.15
ENSMUST00000101562.11
CDS-3UTR GCA 90 bp AGGTATGACTGTTCACAACATGGGTCCTACAAACATGCGGGAGATCATGGCAGCTTGCCCGTCATCCTCTaGACCTCCGAGATGATCTCC +
Preference number: 4 (lower is better)
Translates to: RYDCSQHGSYKHAGDHGSLPVIL*TSEMIS
Trigger: GGAGATCATCTCGGAGGTGCAGAGGATGACGGGCAA...GCTGCCATGATCTCCCGCATGTTTGTAGGACCCATGTTGTGAACAGTCATACCT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000064595.15
ENSMUST00000101562.11
CDS-3UTR GCA 90 bp AGGTATGACTGTTCACAACATGGGTCCTACAAACATGCGGGAGATCATGGCAGCTCCCAGAGCACTCGATaGAAGTCAGGATGCCCAGGT +
Preference number: 4 (lower is better)
Translates to: RYDCSQHGSYKHAGDHGSSQSTR*KSGCPG
Trigger: ACCTGGGCATCCTGACTTGCATCGAGTGCTCTGGGA...GCTGCCATGATCTCCCGCATGTTTGTAGGACCCATGTTGTGAACAGTCATACCT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000064595.15
ENSMUST00000101562.11
CDS-3UTR GCA 90 bp ATGTCTTTAAAGGTGAATGGATGGCATTGGTGGACAAGGTCCAGGGTAGGGCGATCATCCAGGTCCTCGTaGAGCAGCCGCCATTCATAC +
Preference number: 4 (lower is better)
Translates to: MSLKVNGWHWWTRSRVGRSSRSS*SSRHSY
Trigger: GTATGAATGGCGGCTGCTGCACGAGGACCTGGATGA...TCGCCCTACCCTGGACCTTGTCCACCAATGCCATCCATTCACCTTTAAAGACAT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000064595.15
ENSMUST00000090834.13
ENSMUST00000101562.11
CDS-3UTR GCA 90 bp GTTTGGGGGCACTGGGCTCCCCAAGGTCTACAGATTTCTGATATGTTCTTGACTTCATCCAGGTCCTCGTaGAGCAGCCGCCATTCATAC +
Preference number: 4 (lower is better)
Translates to: VWGHWAPQGLQISDMFLTSSRSS*SSRHSY
Trigger: GTATGAATGGCGGCTGCTGCACGAGGACCTGGATGA...AGTCAAGAACATATCAGAAATCTGTAGACCTTGGGGAGCCCAGTGCCCCCAAAC
52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000064595.15
ENSMUST00000090834.13
ENSMUST00000101562.11
CDS-3UTR GCA 90 bp AGGTATGACTGTTCACAACATGGGTCCTACAAACATGCGGGAGATCATGGCAGCTCATCCAGGTCCTCGTaGAGCAGCCGCCATTCATAC +
Preference number: 4 (lower is better)
Translates to: RYDCSQHGSYKHAGDHGSSSRSS*SSRHSY
Trigger: GTATGAATGGCGGCTGCTGCACGAGGACCTGGATGA...GCTGCCATGATCTCCCGCATGTTTGTAGGACCCATGTTGTGAACAGTCATACCT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000064595.15
ENSMUST00000090834.13
ENSMUST00000101562.11
CDS-3UTR GCA 90 bp GCTTACTGTGGCCCGCACCACATATTCTACCTGTGTGACGGGATGCTGAACGAGGTCCTTGGTGAGGTTTaGAGTATCTCTGGCCAAAGA +
Preference number: 4 (lower is better)
Translates to: AYCGPHHIFYLCDGMLNEVLGEV*SISGQR
Trigger: TCTTTGGCCAGAGATACTGCAAACCTCACCAAGGAC...CTCGTTCAGCATCCCGTCACACAGGTAGAATATGTGGTGCGGGCCACAGTAAGC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000064595.15
ENSMUST00000090834.13
ENSMUST00000101562.11
CDS-3UTR GCA 90 bp TTGTTTAAGCTGTTTTTAGGCTCAGCTACTCCTGGAAATACAGGATCCTGGGTAGGGAGGAGGGCGGGCTaGCACTCAGGATGGCTCCAT +
Preference number: 4 (lower is better)
Translates to: LFKLFLGSATPGNTGSWVGRRAG*HSGWLH
Trigger: ATGGAGCCATCCTGAGTGGCAGCCCGCCCTCCTCCC...TACCCAGGATCCTGTATTTCCAGGAGTAGCTGAGCCTAAAAACAGCTTAAACAA
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000050990.10
ENSMUST00000064595.15
ENSMUST00000090834.13
ENSMUST00000101562.11
CDS-3UTR GCA 90 bp TTGTTTAAGCTGTTTTTAGGCTCAGCTACTCCTGGAAATACAGGATCCTGGGTAGCAGGGGCGGGGGCTTaGTCTGTGAGGTCCCAGGTT +
Preference number: 4 (lower is better)
Translates to: LFKLFLGSATPGNTGSWVAGAGA*SVRSQV
Trigger: AACCTGGGACCTCACAGAGCAAGCCCCCGCCCCTGC...TACCCAGGATCCTGTATTTCCAGGAGTAGCTGAGCCTAAAAACAGCTTAAACAA
52% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 4 transcripts:
ENSMUST00000050990.10
ENSMUST00000064595.15
ENSMUST00000090834.13
ENSMUST00000101562.11
CDS-3UTR GCA 90 bp TGCTTTCCTTTCAGTTGCTTTCTCTTCTCAGTTTGCAAAGAGCGAGTAACAGGAATGGGTGCTGGGGGCTaGAGGGCCATGGCGTTGGAC +
Preference number: 4 (lower is better)
Translates to: CFPFSCFLFSVCKERVTGMGAGG*RAMALD
Trigger: GTCCAACGCCATGGCCCTGCAGCCCCCAGCACCCAT...TCCTGTTACTCGCTCTTTGCAAACTGAGAAGAGAAAGCAACTGAAAGGAAAGCA
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000064595.15
ENSMUST00000090834.13
ENSMUST00000101562.11
CDS-3UTR CCA 90 bp CTCAGCTACTCCTGGAAATACAGGATCCTGGGTATACAGTTAAATAGCTTCTCAACGGTGTTCCGGCACTaGGCCGTGCGCGTGGTGAAG +
Preference number: 4 (lower is better)
Translates to: LSYSWKYRILGIQLNSFSTVFRH*AVRVVK
Trigger: CTTCACCACGCGCACGGCCCAGTGCCGGAACACCGT...TGAGAAGCTATTTAACTGTATACCCAGGATCCTGTATTTCCAGGAGTAGCTGAG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000050990.10
ENSMUST00000064595.15
ENSMUST00000090834.13
ENSMUST00000101562.11
CDS-3UTR CCA 90 bp TGTGGCCCGCACCACATATTCTACCTGTGTGACGGGATGCTGAACGAGGCAAATGTACGAATCATCCCGTaGAGCTTGGCATGCTCCTTT +
Preference number: 4 (lower is better)
Translates to: CGPHHIFYLCDGMLNEANVRIIP*SLACSF
Trigger: AAAGGAGCATGCCAAGCTCCACGGGATGATTCGTAC...ATTTGCCTCGTTCAGCATCCCGTCACACAGGTAGAATATGTGGTGCGGGCCACA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000064595.15
ENSMUST00000090834.13
ENSMUST00000101562.11
CDS-3UTR CCA 90 bp TGCTTTCCTTTCAGTTGCTTTCTCTTCTCAGTTTGCAAAGAGCGAGTAACAGGAGCCTCGCAAAGGCTGTaGAGCTTCGCCGCGGTGTCG +
Preference number: 4 (lower is better)
Translates to: CFPFSCFLFSVCKERVTGASQRL*SFAAVS
Trigger: CGACACCGCGGCGAAGCTCCACAGCCTTTGCGAGGC...TCCTGTTACTCGCTCTTTGCAAACTGAGAAGAGAAAGCAACTGAAAGGAAAGCA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000064595.15
ENSMUST00000090834.13
ENSMUST00000101562.11
CDS-3UTR CCA 90 bp ATGTCTTTAAAGGTGAATGGATGGCATTGGTGGACAAGGTCCAGGGTAGGGCGACATTCTGCAAGATGCTaGGCCCAAAGCCCCTCTGCT +
Preference number: 4 (lower is better)
Translates to: MSLKVNGWHWWTRSRVGRHSARC*AQSPSA
Trigger: AGCAGAGGGGCTTTGGGCCCAGCATCTTGCAGAATG...TCGCCCTACCCTGGACCTTGTCCACCAATGCCATCCATTCACCTTTAAAGACAT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000064595.15
ENSMUST00000090834.13
ENSMUST00000101562.11
CDS-3UTR CCA 90 bp AAGCTGTTTTTAGGCTCAGCTACTCCTGGAAATACAGGATCCTGGGTATACAGTGTGCGCTGGTGGTGCTaGGGGGTATTGACTGGGAGG +
Preference number: 4 (lower is better)
Translates to: KLFLGSATPGNTGSWVYSVRWWC*GVLTGR
Trigger: CCTCCCAGTCAATACCCCCCAGCACCACCAGCGCAC...ACTGTATACCCAGGATCCTGTATTTCCAGGAGTAGCTGAGCCTAAAAACAGCTT
52% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 4 transcripts:
ENSMUST00000050990.10
ENSMUST00000064595.15
ENSMUST00000090834.13
ENSMUST00000101562.11
CDS-3UTR CCA 90 bp TTGTTTAAGCTGTTTTTAGGCTCAGCTACTCCTGGAAATACAGGATCCTGGGTAGCCAACATTCCGAGGTaGGAGCGGGGGTGCGCTGGT +
Preference number: 4 (lower is better)
Translates to: LFKLFLGSATPGNTGSWVANIPR*ERGCAG
Trigger: ACCAGCGCACCCCCGCTCCCACCTCGGAATGTTGGC...TACCCAGGATCCTGTATTTCCAGGAGTAGCTGAGCCTAAAAACAGCTTAAACAA
52% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 4 transcripts:
ENSMUST00000050990.10
ENSMUST00000064595.15
ENSMUST00000090834.13
ENSMUST00000101562.11
CDS-3UTR CCA 90 bp CCATATCCTAACCACGGCTCTTACCTGTGCTTAATGTTATTAAGTAGAGGTATGTCTGAGGCAGGCGGCTaGGTGGCTGAGGTGGCAGGG +
Preference number: 4 (lower is better)
Translates to: PYPNHGSYLCLMLLSRGMSEAGG*VAEVAG
Trigger: CCCTGCCACCTCAGCCACCCAGCCGCCTGCCTCAGA...CATACCTCTACTTAATAACATTAAGCACAGGTAAGAGCCGTGGTTAGGATATGG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000064595.15
ENSMUST00000090834.13
ENSMUST00000101562.11
CDS-3UTR CCA 90 bp CCAAATTTGTTTAAGCTGTTTTTAGGCTCAGCTACTCCTGGAAATACAGGATCCCCTAGGCATGGGTGCTaGGGGCTGCAGGGCCATGGC +
Preference number: 4 (lower is better)
Translates to: PNLFKLFLGSATPGNTGSPRHGC*GLQGHG
Trigger: GCCATGGCCCTGCAGCCCCCAGCACCCATGCCTAGG...GGATCCTGTATTTCCAGGAGTAGCTGAGCCTAAAAACAGCTTAAACAAATTTGG
52% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 4 transcripts:
ENSMUST00000050990.10
ENSMUST00000064595.15
ENSMUST00000090834.13
ENSMUST00000101562.11
CDS-3UTR CCA 90 bp CGTTCAGGCCTTATGCTTGCCTCTTTCATTTCCCATATCCTAACCACGGCTCTTCGCCGTTCCTCATCCTaGGCCTGTTTGATGGTGTGG +
Preference number: 4 (lower is better)
Translates to: RSGLMLASFISHILTTALRRSSS*ACLMVW
Trigger: CCACACCATCAAACAGGCCCAGGATGAGGAACGGCG...AAGAGCCGTGGTTAGGATATGGGAAATGAAAGAGGCAAGCATAAGGCCTGAACG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000090834.13
ENSMUST00000101562.11
CDS-3UTR TCA 90 bp AAGCTGTTTTTAGGCTCAGCTACTCCTGGAAATACAGGATCCTGGGTATACAGTTGCCTGGGTTGGGCTTaGCTGGGTCCTCAGACGGTA +
Preference number: 4 (lower is better)
Translates to: KLFLGSATPGNTGSWVYSCLGWA*LGPQTV
Trigger: TACCGTCTGAGGACCCAGTCAAGCCCAACCCAGGCA...ACTGTATACCCAGGATCCTGTATTTCCAGGAGTAGCTGAGCCTAAAAACAGCTT
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000050990.10
ENSMUST00000064595.15
ENSMUST00000090834.13
ENSMUST00000101562.11
CDS-3UTR TCA 90 bp GTTTGGGGGCACTGGGCTCCCCAAGGTCTACAGATTTCTGATATGTTCTTGACTAAATGTCTCTGGTCTTaGCGGCCTCGCAAAGGCTGT +
Preference number: 4 (lower is better)
Translates to: VWGHWAPQGLQISDMFLTKCLWS*RPRKGC
Trigger: ACAGCCTTTGCGAGGCCGTCAAGACCAGAGACATTT...AGTCAAGAACATATCAGAAATCTGTAGACCTTGGGGAGCCCAGTGCCCCCAAAC
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000064595.15
ENSMUST00000090834.13
ENSMUST00000101562.11
CDS-3UTR TCA 90 bp CGTTCAGGCCTTATGCTTGCCTCTTTCATTTCCCATATCCTAACCACGGCTCTTCCGACAAGGCCTGAGTaGGCAGTTCCTCACAGTGTT +
Preference number: 4 (lower is better)
Translates to: RSGLMLASFISHILTTALPTRPE*AVPHSV
Trigger: AACACTGTGAGGAACTGCTCACTCAGGCCTTGTCGG...AAGAGCCGTGGTTAGGATATGGGAAATGAAAGAGGCAAGCATAAGGCCTGAACG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000064595.15
ENSMUST00000090834.13
ENSMUST00000101562.11
CDS-3UTR TCA 90 bp TTTAGGAGTGATGCGATGGGCTTACATAGTGTAACTGGGATGTTTGGGGGCACTCCGACAAGGCCTGAGTaGGCAGTTCCTCACAGTGTT +
Preference number: 4 (lower is better)
Translates to: FRSDAMGLHSVTGMFGGTPTRPE*AVPHSV
Trigger: AACACTGTGAGGAACTGCTCACTCAGGCCTTGTCGG...AGTGCCCCCAAACATCCCAGTTACACTATGTAAGCCCATCGCATCACTCCTAAA
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000064595.15
ENSMUST00000090834.13
ENSMUST00000101562.11
CDS-3UTR TCA 90 bp TTGTTTAAGCTGTTTTTAGGCTCAGCTACTCCTGGAAATACAGGATCCTGGGTACGCCCCGACAAGGCCTaGGTGAGCAGTTCCTCACAG +
Preference number: 4 (lower is better)
Translates to: LFKLFLGSATPGNTGSWVRPDKA*VSSSSQ
Trigger: CTGTGAGGAACTGCTCACTCAGGCCTTGTCGGGGCG...TACCCAGGATCCTGTATTTCCAGGAGTAGCTGAGCCTAAAAACAGCTTAAACAA
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000050990.10
ENSMUST00000064595.15
ENSMUST00000090834.13
ENSMUST00000101562.11
CDS-3UTR TCA 90 bp TTGTTTAAGCTGTTTTTAGGCTCAGCTACTCCTGGAAATACAGGATCCTGGGTAGAAGCTGGTTTCTTCTaGGGCAGGCGGCTGGGTGGC +
Preference number: 4 (lower is better)
Translates to: LFKLFLGSATPGNTGSWVEAGFF*GRRLGG
Trigger: GCCACCCAGCCGCCTGCCTCAGAAGAAACCAGCTTC...TACCCAGGATCCTGTATTTCCAGGAGTAGCTGAGCCTAAAAACAGCTTAAACAA
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000050990.10
ENSMUST00000064595.15
ENSMUST00000090834.13
ENSMUST00000101562.11
CDS-3UTR GCA 90 bp TGTGGCCCGCACCACATATTCTACCTGTGTGACGGGATGCTGAACGAGGCAAATGATGTAGTCCTTCCTTaGAATCATGTCACTGCCTGG +
Preference number: 4 (lower is better)
Translates to: CGPHHIFYLCDGMLNEANDVVLP*NHVTAW
Trigger: CCAGGCAGTGACATGATTGCAAGGAAGGACTACATC...ATTTGCCTCGTTCAGCATCCCGTCACACAGGTAGAATATGTGGTGCGGGCCACA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000064595.15
ENSMUST00000090834.13
ENSMUST00000101562.11
CDS-3UTR GCA 90 bp GTTTTTAGGCTCAGCTACTCCTGGAAATACAGGATCCTGGGTATACAGTTAAATATGGGTGCTGGGGGCTaGAGGGCCATGGCGTTGGAC +
Preference number: 4 (lower is better)
Translates to: VFRLSYSWKYRILGIQLNMGAGG*RAMALD
Trigger: GTCCAACGCCATGGCCCTGCAGCCCCCAGCACCCAT...ATTTAACTGTATACCCAGGATCCTGTATTTCCAGGAGTAGCTGAGCCTAAAAAC
51% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 4 transcripts:
ENSMUST00000050990.10
ENSMUST00000064595.15
ENSMUST00000090834.13
ENSMUST00000101562.11
CDS-3UTR GCA 90 bp AAGCTGTTTTTAGGCTCAGCTACTCCTGGAAATACAGGATCCTGGGTATACAGTCGGGAAACGCTCCTTTaGGGCTGGGCTCTCCATCGA +
Preference number: 4 (lower is better)
Translates to: KLFLGSATPGNTGSWVYSRETLL*GWALHR
Trigger: TCGATGGAGAGCCCAGCCGCAAAGGAGCGTTTCCCG...ACTGTATACCCAGGATCCTGTATTTCCAGGAGTAGCTGAGCCTAAAAACAGCTT
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000050990.10
ENSMUST00000064595.15
ENSMUST00000090834.13
ENSMUST00000101562.11
CDS-3UTR CCA 90 bp CCGCACCACATATTCTACCTGTGTGACGGGATGCTGAACGAGGCAAATCCTCAAAACTTCTCCAGAGCCTaGGTGTACTGTTCCTCGTTC +
Preference number: 4 (lower is better)
Translates to: PHHIFYLCDGMLNEANPQNFSRA*VYCSSF
Trigger: GAACGAGGAACAGTACACCCAGGCTCTGGAGAAGTT...TTGAGGATTTGCCTCGTTCAGCATCCCGTCACACAGGTAGAATATGTGGTGCGG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000064595.15
ENSMUST00000090834.13
ENSMUST00000101562.11
CDS-3UTR CCA 90 bp GTTTTTAGGCTCAGCTACTCCTGGAAATACAGGATCCTGGGTATACAGTTAAATTGGCAGGTGGCCGGTTaGCAGTGCCGTGGGAGATGG +
Preference number: 4 (lower is better)
Translates to: VFRLSYSWKYRILGIQLNWQVAG*QCRGRW
Trigger: CCATCTCCCACGGCACTGCCAACCGGCCACCTGCCA...ATTTAACTGTATACCCAGGATCCTGTATTTCCAGGAGTAGCTGAGCCTAAAAAC
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000050990.10
ENSMUST00000064595.15
ENSMUST00000101562.11
CDS-3UTR CCA 90 bp CCATATCCTAACCACGGCTCTTACCTGTGCTTAATGTTATTAAGTAGAGGTATGTGGCAGGTGGCCGGTTaGCAGTGCCGTGGGAGATGG +
Preference number: 4 (lower is better)
Translates to: PYPNHGSYLCLMLLSRGMWQVAG*QCRGRW
Trigger: CCATCTCCCACGGCACTGCCAACCGGCCACCTGCCA...CATACCTCTACTTAATAACATTAAGCACAGGTAAGAGCCGTGGTTAGGATATGG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000064595.15
ENSMUST00000101562.11
CDS-3UTR CCA 90 bp CCAAATTTGTTTAAGCTGTTTTTAGGCTCAGCTACTCCTGGAAATACAGGATCCTGGCAGGTGGCCGGTTaGCAGTGCCGTGGGAGATGG +
Preference number: 4 (lower is better)
Translates to: PNLFKLFLGSATPGNTGSWQVAG*QCRGRW
Trigger: CCATCTCCCACGGCACTGCCAACCGGCCACCTGCCA...GGATCCTGTATTTCCAGGAGTAGCTGAGCCTAAAAACAGCTTAAACAAATTTGG
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000050990.10
ENSMUST00000064595.15
ENSMUST00000101562.11
CDS-3UTR CCA 90 bp ATGTCTTTAAAGGTGAATGGATGGCATTGGTGGACAAGGTCCAGGGTAGGGCGAAATCATGTCACTGCCTaGGTTGGGCTTGACTGGGTC +
Preference number: 4 (lower is better)
Translates to: MSLKVNGWHWWTRSRVGRNHVTA*VGLDWV
Trigger: GACCCAGTCAAGCCCAACCCAGGCAGTGACATGATT...TCGCCCTACCCTGGACCTTGTCCACCAATGCCATCCATTCACCTTTAAAGACAT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000064595.15
ENSMUST00000090834.13
ENSMUST00000101562.11
CDS-3UTR CCA 90 bp GTTTTTAGGCTCAGCTACTCCTGGAAATACAGGATCCTGGGTATACAGTTAAATGCCTCGCAAAGGCTGTaGAGCTTCGCCGCGGTGTCG +
Preference number: 4 (lower is better)
Translates to: VFRLSYSWKYRILGIQLNASQRL*SFAAVS
Trigger: CGACACCGCGGCGAAGCTCCACAGCCTTTGCGAGGC...ATTTAACTGTATACCCAGGATCCTGTATTTCCAGGAGTAGCTGAGCCTAAAAAC
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000050990.10
ENSMUST00000064595.15
ENSMUST00000090834.13
ENSMUST00000101562.11
CDS-3UTR CCA 90 bp AGGTATGACTGTTCACAACATGGGTCCTACAAACATGCGGGAGATCATGGCAGCCTGGCTCATGCCCATTaGCCAGTGGGATTTTCTCTG +
Preference number: 4 (lower is better)
Translates to: RYDCSQHGSYKHAGDHGSLAHAH*PVGFSL
Trigger: CAGAGAAAATCCCACTGGCCAATGGGCATGAGCCAG...GCTGCCATGATCTCCCGCATGTTTGTAGGACCCATGTTGTGAACAGTCATACCT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000064595.15
ENSMUST00000090834.13
ENSMUST00000101562.11
CDS-3UTR CCA 90 bp CGTTCAGGCCTTATGCTTGCCTCTTTCATTTCCCATATCCTAACCACGGCTCTTTGGACTGAAACTGGCTaGACCCCAGCTGGTAGAAGC +
Preference number: 4 (lower is better)
Translates to: RSGLMLASFISHILTTALWTETG*TPAGRS
Trigger: GCTTCTACCAGCTGGGGTCCAGCCAGTTTCAGTCCA...AAGAGCCGTGGTTAGGATATGGGAAATGAAAGAGGCAAGCATAAGGCCTGAACG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000064595.15
ENSMUST00000090834.13
ENSMUST00000101562.11
CDS-3UTR CCA 90 bp TTTAGGAGTGATGCGATGGGCTTACATAGTGTAACTGGGATGTTTGGGGGCACTCATTCTGCAAGATGCTaGGCCCAAAGCCCCTCTGCT +
Preference number: 4 (lower is better)
Translates to: FRSDAMGLHSVTGMFGGTHSARC*AQSPSA
Trigger: AGCAGAGGGGCTTTGGGCCCAGCATCTTGCAGAATG...AGTGCCCCCAAACATCCCAGTTACACTATGTAAGCCCATCGCATCACTCCTAAA
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000064595.15
ENSMUST00000090834.13
ENSMUST00000101562.11
CDS-3UTR CCA 90 bp AGGTATGACTGTTCACAACATGGGTCCTACAAACATGCGGGAGATCATGGCAGCGGCTGCCACTCAGGATaGCTCCATAGGTCTCATTCT +
Preference number: 4 (lower is better)
Translates to: RYDCSQHGSYKHAGDHGSGCHSG*LHRSHS
Trigger: AGAATGAGACCTATGGAGCCATCCTGAGTGGCAGCC...GCTGCCATGATCTCCCGCATGTTTGTAGGACCCATGTTGTGAACAGTCATACCT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000064595.15
ENSMUST00000090834.13
ENSMUST00000101562.11
CDS-3UTR CCA 90 bp CTCAGCTACTCCTGGAAATACAGGATCCTGGGTATACAGTTAAATAGCTTCTCAGTGCGCTGGTGGTGCTaGGGGGTATTGACTGGGAGG +
Preference number: 4 (lower is better)
Translates to: LSYSWKYRILGIQLNSFSVRWWC*GVLTGR
Trigger: CCTCCCAGTCAATACCCCCCAGCACCACCAGCGCAC...TGAGAAGCTATTTAACTGTATACCCAGGATCCTGTATTTCCAGGAGTAGCTGAG
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000050990.10
ENSMUST00000064595.15
ENSMUST00000090834.13
ENSMUST00000101562.11
CDS-3UTR CCA 90 bp GTTTTTAGGCTCAGCTACTCCTGGAAATACAGGATCCTGGGTATACAGTTAAATGCCAACATTCCGAGGTaGGAGCGGGGGTGCGCTGGT +
Preference number: 4 (lower is better)
Translates to: VFRLSYSWKYRILGIQLNANIPR*ERGCAG
Trigger: ACCAGCGCACCCCCGCTCCCACCTCGGAATGTTGGC...ATTTAACTGTATACCCAGGATCCTGTATTTCCAGGAGTAGCTGAGCCTAAAAAC
51% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 4 transcripts:
ENSMUST00000050990.10
ENSMUST00000064595.15
ENSMUST00000090834.13
ENSMUST00000101562.11
CDS-3UTR CCA 90 bp AAGCTGTTTTTAGGCTCAGCTACTCCTGGAAATACAGGATCCTGGGTATACAGTAGCCACAGGAGGGGGTaGTGTGGTGGTCAGGGGATT +
Preference number: 4 (lower is better)
Translates to: KLFLGSATPGNTGSWVYSSHRRG*CGGQGI
Trigger: AATCCCCTGACCACCACACCACCCCCTCCTGTGGCT...ACTGTATACCCAGGATCCTGTATTTCCAGGAGTAGCTGAGCCTAAAAACAGCTT
51% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 1 transcripts:
ENSMUST00000064595.15
CDS-3UTR CCA 90 bp ACCAATGTCGGAATTGGGCTAAGGAAAACTAAGAATCCCCCAAATTTGTTTAAGTCTGAGGCAGGCGGCTaGGTGGCTGAGGTGGCAGGG +
Preference number: 4 (lower is better)
Translates to: TNVGIGLRKTKNPPNLFKSEAGG*VAEVAG
Trigger: CCCTGCCACCTCAGCCACCCAGCCGCCTGCCTCAGA...CTTAAACAAATTTGGGGGATTCTTAGTTTTCCTTAGCCCAATTCCGACATTGGT
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000050990.10
ENSMUST00000064595.15
ENSMUST00000090834.13
ENSMUST00000101562.11
CDS-3UTR CCA 90 bp TTGTTTAAGCTGTTTTTAGGCTCAGCTACTCCTGGAAATACAGGATCCTGGGTAAGCCACAGGAGGGGGTaGTGTGGTGGTCAGGGGATC +
Preference number: 4 (lower is better)
Translates to: LFKLFLGSATPGNTGSWVSHRRG*CGGQGI
Trigger: GATCCCCTGACCACCACACCACCCCCTCCTGTGGCT...TACCCAGGATCCTGTATTTCCAGGAGTAGCTGAGCCTAAAAACAGCTTAAACAA
51% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 3 transcripts:
ENSMUST00000050990.10
ENSMUST00000090834.13
ENSMUST00000101562.11
CDS-3UTR TCA 90 bp GCTTACTGTGGCCCGCACCACATATTCTACCTGTGTGACGGGATGCTGAACGAGGGGCGTGAAAGTACTTaGTCAGATTCTGAAGCAAAT +
Preference number: 4 (lower is better)
Translates to: AYCGPHHIFYLCDGMLNEGREST*SDSEAN
Trigger: ATTTGCTTCAGAATCTGATCAAGTACTTTCACGCCC...CTCGTTCAGCATCCCGTCACACAGGTAGAATATGTGGTGCGGGCCACAGTAAGC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000064595.15
ENSMUST00000090834.13
ENSMUST00000101562.11
CDS-3UTR TCA 90 bp CCAAATTTGTTTAAGCTGTTTTTAGGCTCAGCTACTCCTGGAAATACAGGATCCGGCAGGTTAGCAGGTTaGGCTTGGCAGGTGGCCGGT +
Preference number: 4 (lower is better)
Translates to: PNLFKLFLGSATPGNTGSGRLAG*AWQVAG
Trigger: ACCGGCCACCTGCCAAGCTCAACCTGCTAACCTGCC...GGATCCTGTATTTCCAGGAGTAGCTGAGCCTAAAAACAGCTTAAACAAATTTGG
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000050990.10
ENSMUST00000064595.15
ENSMUST00000101562.11
CDS-3UTR TCA 90 bp TTGTTTAAGCTGTTTTTAGGCTCAGCTACTCCTGGAAATACAGGATCCTGGGTATGCCTGGGTTGGGCTTaGCTGGGTCCTCAGACGGTA +
Preference number: 4 (lower is better)
Translates to: LFKLFLGSATPGNTGSWVCLGWA*LGPQTV
Trigger: TACCGTCTGAGGACCCAGTCAAGCCCAACCCAGGCA...TACCCAGGATCCTGTATTTCCAGGAGTAGCTGAGCCTAAAAACAGCTTAAACAA
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000050990.10
ENSMUST00000064595.15
ENSMUST00000090834.13
ENSMUST00000101562.11
CDS-3UTR TCA 90 bp TTACATAGTGTAACTGGGATGTTTGGGGGCACTGGGCTCCCCAAGGTCTACAGACCATGTACTTGGCTGTaGTGTAGTCCTTCCTTGCAA +
Preference number: 4 (lower is better)
Translates to: LHSVTGMFGGTGLPKVYRPCTWL*CSPSLQ
Trigger: TTGCAAGGAAGGACTACATCACAGCCAAGTACATGG...TCTGTAGACCTTGGGGAGCCCAGTGCCCCCAAACATCCCAGTTACACTATGTAA
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000064595.15
ENSMUST00000090834.13
ENSMUST00000101562.11
CDS-3UTR TCA 90 bp CTCAAAATAGCATTCTTGGCTGCAGGTCATTCTCCACCTCAGCAGATCACATTATCCGGTCCACAGATCTaGCTGCAAGATGGAGGGCTG +
Preference number: 4 (lower is better)
Translates to: LKIAFLAAGHSPPQQITLSGPQI*LQDGGL
Trigger: CAGCCCTCCATCTTGCAGTCAGATCTGTGGACCGGA...TAATGTGATCTGCTGAGGTGGAGAATGACCTGCAGCCAAGAATGCTATTTTGAG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000064595.15
ENSMUST00000090834.13
ENSMUST00000101562.11
CDS-3UTR TCA 90 bp TTGTTTAAGCTGTTTTTAGGCTCAGCTACTCCTGGAAATACAGGATCCTGGGTACCCGCAGGAGGAGCTTaGGGCACTCAGCATTGTCTG +
Preference number: 4 (lower is better)
Translates to: LFKLFLGSATPGNTGSWVPAGGA*GTQHCL
Trigger: CAGACAATGCTGAGTGCCTCAAGCTCCTCCTGCGGG...TACCCAGGATCCTGTATTTCCAGGAGTAGCTGAGCCTAAAAACAGCTTAAACAA
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000050990.10
ENSMUST00000064595.15
ENSMUST00000090834.13
ENSMUST00000101562.11
CDS-3UTR TCA 90 bp AGGTATGACTGTTCACAACATGGGTCCTACAAACATGCGGGAGATCATGGCAGCCAACGGGGTCTCTCCTaGCTCATTGGCTATCTCAAT +
Preference number: 4 (lower is better)
Translates to: RYDCSQHGSYKHAGDHGSQRGLS*LIGYLN
Trigger: ATTGAGATAGCCAATGAGTCAGGAGAGACCCCGTTG...GCTGCCATGATCTCCCGCATGTTTGTAGGACCCATGTTGTGAACAGTCATACCT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000064595.15
ENSMUST00000090834.13
ENSMUST00000101562.11
CDS-3UTR TCA 90 bp AAGCTGTTTTTAGGCTCAGCTACTCCTGGAAATACAGGATCCTGGGTATACAGTGACAGCTGGCAGATCTaGCGAAGATCGCTGCCTGCT +
Preference number: 4 (lower is better)
Translates to: KLFLGSATPGNTGSWVYSDSWQI*RRSLPA
Trigger: AGCAGGCAGCGATCTTCGTCAGATCTGCCAGCTGTC...ACTGTATACCCAGGATCCTGTATTTCCAGGAGTAGCTGAGCCTAAAAACAGCTT
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000064595.15
CDS-3UTR TCA 90 bp GTTTTTAGGCTCAGCTACTCCTGGAAATACAGGATCCTGGGTATACAGTTAAATGAAGCTGGTTTCTTCTaGGGCAGGCGGCTGGGTGGC +
Preference number: 4 (lower is better)
Translates to: VFRLSYSWKYRILGIQLNEAGFF*GRRLGG
Trigger: GCCACCCAGCCGCCTGCCTCAGAAGAAACCAGCTTC...ATTTAACTGTATACCCAGGATCCTGTATTTCCAGGAGTAGCTGAGCCTAAAAAC
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000050990.10
ENSMUST00000064595.15
ENSMUST00000090834.13
ENSMUST00000101562.11
CDS-3UTR TCA 90 bp CTCAGCTACTCCTGGAAATACAGGATCCTGGGTATACAGTTAAATAGCTTCTCACATCCTGGGCCTGTTTaGTGGTGTGGAGGTCCGTGG +
Preference number: 4 (lower is better)
Translates to: LSYSWKYRILGIQLNSFSHPGPV*WCGGPW
Trigger: CCACGGACCTCCACACCATCAAACAGGCCCAGGATG...TGAGAAGCTATTTAACTGTATACCCAGGATCCTGTATTTCCAGGAGTAGCTGAG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000050990.10
ENSMUST00000090834.13
ENSMUST00000101562.11
CDS-3UTR GCA 90 bp TTACATAGTGTAACTGGGATGTTTGGGGGCACTGGGCTCCCCAAGGTCTACAGAAGGTACTCACACATCTaGAGCTGGAAGAACCGTCTT +
Preference number: 4 (lower is better)
Translates to: LHSVTGMFGGTGLPKVYRRYSHI*SWKNRL
Trigger: AAGACGGTTCTTCCAGCTGCAGATGTGTGAGTACCT...TCTGTAGACCTTGGGGAGCCCAGTGCCCCCAAACATCCCAGTTACACTATGTAA
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000064595.15
ENSMUST00000090834.13
ENSMUST00000101562.11
CDS-3UTR GCA 90 bp TTGTTTAAGCTGTTTTTAGGCTCAGCTACTCCTGGAAATACAGGATCCTGGGTACGGGAAACGCTCCTTTaGGGCTGGGCTCTCCATCGA +
Preference number: 4 (lower is better)
Translates to: LFKLFLGSATPGNTGSWVRETLL*GWALHR
Trigger: TCGATGGAGAGCCCAGCCGCAAAGGAGCGTTTCCCG...TACCCAGGATCCTGTATTTCCAGGAGTAGCTGAGCCTAAAAACAGCTTAAACAA
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000050990.10
ENSMUST00000064595.15
ENSMUST00000090834.13
ENSMUST00000101562.11
CDS-3UTR CCA 90 bp GTTTGGGGGCACTGGGCTCCCCAAGGTCTACAGATTTCTGATATGTTCTTGACTGTACGAATCATCCCGTaGAGCTTGGCATGCTCCTTT +
Preference number: 4 (lower is better)
Translates to: VWGHWAPQGLQISDMFLTVRIIP*SLACSF
Trigger: AAAGGAGCATGCCAAGCTCCACGGGATGATTCGTAC...AGTCAAGAACATATCAGAAATCTGTAGACCTTGGGGAGCCCAGTGCCCCCAAAC
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000064595.15
ENSMUST00000090834.13
ENSMUST00000101562.11
CDS-3UTR CCA 90 bp CGTTCAGGCCTTATGCTTGCCTCTTTCATTTCCCATATCCTAACCACGGCTCTTGGATTGGTCTTCACCTaGCAGGTTAGCAGGTTGAGC +
Preference number: 4 (lower is better)
Translates to: RSGLMLASFISHILTTALGLVFT*QVSRLS
Trigger: GCTCAACCTGCTAACCTGCCAGGTGAAGACCAATCC...AAGAGCCGTGGTTAGGATATGGGAAATGAAAGAGGCAAGCATAAGGCCTGAACG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000064595.15
ENSMUST00000101562.11
CDS-3UTR CCA 90 bp CGTTCAGGCCTTATGCTTGCCTCTTTCATTTCCCATATCCTAACCACGGCTCTTGATCTGACTGCAAGATaGAGGGCTGTCTCATCTGGC +
Preference number: 4 (lower is better)
Translates to: RSGLMLASFISHILTTALDLTAR*RAVSSG
Trigger: GCCAGATGAGACAGCCCTCCATCTTGCAGTCAGATC...AAGAGCCGTGGTTAGGATATGGGAAATGAAAGAGGCAAGCATAAGGCCTGAACG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000064595.15
ENSMUST00000090834.13
ENSMUST00000101562.11
CDS-3UTR CCA 90 bp AGGTATGACTGTTCACAACATGGGTCCTACAAACATGCGGGAGATCATGGCAGCCCAAAGACACAGCATTaGACTGAAACTGGCTGGACC +
Preference number: 4 (lower is better)
Translates to: RYDCSQHGSYKHAGDHGSPKTQH*TETGWT
Trigger: GGTCCAGCCAGTTTCAGTCCAATGCTGTGTCTTTGG...GCTGCCATGATCTCCCGCATGTTTGTAGGACCCATGTTGTGAACAGTCATACCT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000064595.15
ENSMUST00000090834.13
ENSMUST00000101562.11
CDS-3UTR CCA 90 bp CTCAGCTACTCCTGGAAATACAGGATCCTGGGTATACAGTTAAATAGCTTCTCAGCAGGGCCATGGCGTTaGACAGAGGACCCGAAGCTT +
Preference number: 4 (lower is better)
Translates to: LSYSWKYRILGIQLNSFSAGPWR*TEDPKL
Trigger: AAGCTTCGGGTCCTCTGTCCAACGCCATGGCCCTGC...TGAGAAGCTATTTAACTGTATACCCAGGATCCTGTATTTCCAGGAGTAGCTGAG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000050990.10
ENSMUST00000064595.15
ENSMUST00000090834.13
ENSMUST00000101562.11
CDS-3UTR CCA 90 bp TGCTTTCCTTTCAGTTGCTTTCTCTTCTCAGTTTGCAAAGAGCGAGTAACAGGAGCAGGGCCATGGCGTTaGACAGAGGACCCGAAGCTT +
Preference number: 4 (lower is better)
Translates to: CFPFSCFLFSVCKERVTGAGPWR*TEDPKL
Trigger: AAGCTTCGGGTCCTCTGTCCAACGCCATGGCCCTGC...TCCTGTTACTCGCTCTTTGCAAACTGAGAAGAGAAAGCAACTGAAAGGAAAGCA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000064595.15
ENSMUST00000090834.13
ENSMUST00000101562.11
CDS-3UTR CCA 90 bp GACATTCCAGTTTGTCCTGTTTTCCTTGAAAGAAACAAAGAGAGAGCTCTGAGCGCAGGGCCATGGCGTTaGACAGAGGACCCGAAGCTT +
Preference number: 4 (lower is better)
Translates to: DIPVCPVFLERNKERALSAGPWR*TEDPKL
Trigger: AAGCTTCGGGTCCTCTGTCCAACGCCATGGCCCTGC...GCTCAGAGCTCTCTCTTTGTTTCTTTCAAGGAAAACAGGACAAACTGGAATGTC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000064595.15
ENSMUST00000090834.13
ENSMUST00000101562.11
CDS-3UTR CCA 90 bp TTTAGGAGTGATGCGATGGGCTTACATAGTGTAACTGGGATGTTTGGGGGCACTGTGCTTTCACTCGCTTaGGCTTTGACTTGGTCGCCT +
Preference number: 4 (lower is better)
Translates to: FRSDAMGLHSVTGMFGGTVLSLA*ALTWSP
Trigger: AGGCGACCAAGTCAAAGCCCAAGCGAGTGAAAGCAC...AGTGCCCCCAAACATCCCAGTTACACTATGTAAGCCCATCGCATCACTCCTAAA
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000064595.15
ENSMUST00000090834.13
ENSMUST00000101562.11
CDS-3UTR CCA 90 bp AAGCTGTTTTTAGGCTCAGCTACTCCTGGAAATACAGGATCCTGGGTATACAGTCGCCGTTCCTCATCCTaGGCCTGTTTGATGGTGTGG +
Preference number: 4 (lower is better)
Translates to: KLFLGSATPGNTGSWVYSRRSSS*ACLMVW
Trigger: CCACACCATCAAACAGGCCCAGGATGAGGAACGGCG...ACTGTATACCCAGGATCCTGTATTTCCAGGAGTAGCTGAGCCTAAAAACAGCTT
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000050990.10
ENSMUST00000090834.13
ENSMUST00000101562.11
CDS-3UTR CCA 90 bp CTCAGCTACTCCTGGAAATACAGGATCCTGGGTATACAGTTAAATAGCTTCTCACAGGAGGGGGTGGTGTaGTGGTCAGGGGATCTTTGC +
Preference number: 4 (lower is better)
Translates to: LSYSWKYRILGIQLNSFSQEGVV*WSGDLC
Trigger: GCAAAGATCCCCTGACCACCACACCACCCCCTCCTG...TGAGAAGCTATTTAACTGTATACCCAGGATCCTGTATTTCCAGGAGTAGCTGAG
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000050990.10
ENSMUST00000090834.13
ENSMUST00000101562.11
CDS-3UTR CCA 90 bp GTTTTTAGGCTCAGCTACTCCTGGAAATACAGGATCCTGGGTATACAGTTAAATAGCCACAGGAGGGGGTaGTGTGGTGGTCAGGGGATC +
Preference number: 4 (lower is better)
Translates to: VFRLSYSWKYRILGIQLNSHRRG*CGGQGI
Trigger: GATCCCCTGACCACCACACCACCCCCTCCTGTGGCT...ATTTAACTGTATACCCAGGATCCTGTATTTCCAGGAGTAGCTGAGCCTAAAAAC
50% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 3 transcripts:
ENSMUST00000050990.10
ENSMUST00000090834.13
ENSMUST00000101562.11
CDS-3UTR TCA 90 bp CCGCACCACATATTCTACCTGTGTGACGGGATGCTGAACGAGGCAAATCCTCAACCAGCCCAGAGATATTaGTTGCCTTCACAGATTTCT +
Preference number: 4 (lower is better)
Translates to: PHHIFYLCDGMLNEANPQPAQRY*LPSQIS
Trigger: AGAAATCTGTGAAGGCAATCAATATCTCTGGGCTGG...TTGAGGATTTGCCTCGTTCAGCATCCCGTCACACAGGTAGAATATGTGGTGCGG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000064595.15
ENSMUST00000090834.13
ENSMUST00000101562.11
CDS-3UTR TCA 90 bp TGTGGCCCGCACCACATATTCTACCTGTGTGACGGGATGCTGAACGAGGCAAATTTCCACCTGCAATGCTaGCTTCAAAATATCTCGAAG +
Preference number: 4 (lower is better)
Translates to: CGPHHIFYLCDGMLNEANFHLQC*LQNISK
Trigger: CTTCGAGATATTTTGAAGTCAGCATTGCAGGTGGAA...ATTTGCCTCGTTCAGCATCCCGTCACACAGGTAGAATATGTGGTGCGGGCCACA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000064595.15
ENSMUST00000090834.13
ENSMUST00000101562.11
CDS-3UTR TCA 90 bp CCATATCCTAACCACGGCTCTTACCTGTGCTTAATGTTATTAAGTAGAGGTATGTGCCTGGGTTGGGCTTaGCTGGGTCCTCAGACGGTA +
Preference number: 4 (lower is better)
Translates to: PYPNHGSYLCLMLLSRGMCLGWA*LGPQTV
Trigger: TACCGTCTGAGGACCCAGTCAAGCCCAACCCAGGCA...CATACCTCTACTTAATAACATTAAGCACAGGTAAGAGCCGTGGTTAGGATATGG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000064595.15
ENSMUST00000090834.13
ENSMUST00000101562.11
CDS-3UTR TCA 90 bp ATGTCTTTAAAGGTGAATGGATGGCATTGGTGGACAAGGTCCAGGGTAGGGCGACCATGTACTTGGCTGTaGTGTAGTCCTTCCTTGCAA +
Preference number: 4 (lower is better)
Translates to: MSLKVNGWHWWTRSRVGRPCTWL*CSPSLQ
Trigger: TTGCAAGGAAGGACTACATCACAGCCAAGTACATGG...TCGCCCTACCCTGGACCTTGTCCACCAATGCCATCCATTCACCTTTAAAGACAT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000064595.15
ENSMUST00000090834.13
ENSMUST00000101562.11
CDS-3UTR TCA 90 bp CTCAGCTACTCCTGGAAATACAGGATCCTGGGTATACAGTTAAATAGCTTCTCATCCGGTCCACAGATCTaGCTGCAAGATGGAGGGCTG +
Preference number: 4 (lower is better)
Translates to: LSYSWKYRILGIQLNSFSSGPQI*LQDGGL
Trigger: CAGCCCTCCATCTTGCAGTCAGATCTGTGGACCGGA...TGAGAAGCTATTTAACTGTATACCCAGGATCCTGTATTTCCAGGAGTAGCTGAG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000050990.10
ENSMUST00000064595.15
ENSMUST00000090834.13
ENSMUST00000101562.11
CDS-3UTR TCA 90 bp GTTTTTAGGCTCAGCTACTCCTGGAAATACAGGATCCTGGGTATACAGTTAAATCCCGCAGGAGGAGCTTaGGGCACTCAGCATTGTCTG +
Preference number: 4 (lower is better)
Translates to: VFRLSYSWKYRILGIQLNPAGGA*GTQHCL
Trigger: CAGACAATGCTGAGTGCCTCAAGCTCCTCCTGCGGG...ATTTAACTGTATACCCAGGATCCTGTATTTCCAGGAGTAGCTGAGCCTAAAAAC
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000050990.10
ENSMUST00000064595.15
ENSMUST00000090834.13
ENSMUST00000101562.11
CDS-3UTR TCA 90 bp CCATATCCTAACCACGGCTCTTACCTGTGCTTAATGTTATTAAGTAGAGGTATGCCCGCAGGAGGAGCTTaGGGCACTCAGCATTGTCTG +
Preference number: 4 (lower is better)
Translates to: PYPNHGSYLCLMLLSRGMPAGGA*GTQHCL
Trigger: CAGACAATGCTGAGTGCCTCAAGCTCCTCCTGCGGG...CATACCTCTACTTAATAACATTAAGCACAGGTAAGAGCCGTGGTTAGGATATGG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000064595.15
ENSMUST00000090834.13
ENSMUST00000101562.11
CDS-3UTR TCA 90 bp TTGTTTAAGCTGTTTTTAGGCTCAGCTACTCCTGGAAATACAGGATCCTGGGTACCGATCCACCACTCCTaGTCCTCTTCCCCATCCACA +
Preference number: 4 (lower is better)
Translates to: LFKLFLGSATPGNTGSWVPIHHS*SSSPST
Trigger: TGTGGATGGGGAAGAGGATCAGGAGTGGTGGATCGG...TACCCAGGATCCTGTATTTCCAGGAGTAGCTGAGCCTAAAAACAGCTTAAACAA
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000050990.10
ENSMUST00000064595.15
ENSMUST00000090834.13
ENSMUST00000101562.11
CDS-3UTR TCA 90 bp CCAAATTTGTTTAAGCTGTTTTTAGGCTCAGCTACTCCTGGAAATACAGGATCCCATCCTGGGCCTGTTTaGTGGTGTGGAGGTCCGTGG +
Preference number: 4 (lower is better)
Translates to: PNLFKLFLGSATPGNTGSHPGPV*WCGGPW
Trigger: CCACGGACCTCCACACCATCAAACAGGCCCAGGATG...GGATCCTGTATTTCCAGGAGTAGCTGAGCCTAAAAACAGCTTAAACAAATTTGG
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000050990.10
ENSMUST00000090834.13
ENSMUST00000101562.11
CDS-3UTR GCA 90 bp CGTTCAGGCCTTATGCTTGCCTCTTTCATTTCCCATATCCTAACCACGGCTCTTCTTCTCCATCTCCTCTaGAATCTCAGCCCCGCTTAT +
Preference number: 4 (lower is better)
Translates to: RSGLMLASFISHILTTALLLHLL*NLSPAY
Trigger: ATAAGCGGGGCTGAGATTGCAGAGGAGATGGAGAAG...AAGAGCCGTGGTTAGGATATGGGAAATGAAAGAGGCAAGCATAAGGCCTGAACG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000064595.15
ENSMUST00000090834.13
ENSMUST00000101562.11
CDS-3UTR GCA 90 bp AAGCTGTTTTTAGGCTCAGCTACTCCTGGAAATACAGGATCCTGGGTATACAGTGGGCTGTGCTGCCCTTaGCTGTCTGTTTATCCAGGT +
Preference number: 4 (lower is better)
Translates to: KLFLGSATPGNTGSWVYSGLCCP*LSVYPG
Trigger: ACCTGGATAAACAGACAGGCAAGGGCAGCACAGCCC...ACTGTATACCCAGGATCCTGTATTTCCAGGAGTAGCTGAGCCTAAAAACAGCTT
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000050990.10
ENSMUST00000064595.15
ENSMUST00000090834.13
ENSMUST00000101562.11
CDS-3UTR GCA 90 bp ATGTCTTTAAAGGTGAATGGATGGCATTGGTGGACAAGGTCCAGGGTAGGGCGAGTCCTTGGTGAGGTTTaGAGTATCTCTGGCCAAAGA +
Preference number: 4 (lower is better)
Translates to: MSLKVNGWHWWTRSRVGRVLGEV*SISGQR
Trigger: TCTTTGGCCAGAGATACTGCAAACCTCACCAAGGAC...TCGCCCTACCCTGGACCTTGTCCACCAATGCCATCCATTCACCTTTAAAGACAT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000064595.15
ENSMUST00000090834.13
ENSMUST00000101562.11
CDS-3UTR GCA 90 bp AAGCTGTTTTTAGGCTCAGCTACTCCTGGAAATACAGGATCCTGGGTATACAGTGGCCCAAAGCCCCTCTaGTTGTCCTTGGTGAGGTTT +
Preference number: 4 (lower is better)
Translates to: KLFLGSATPGNTGSWVYSGPKPL*LSLVRF
Trigger: AAACCTCACCAAGGACAAGCAGAGGGGCTTTGGGCC...ACTGTATACCCAGGATCCTGTATTTCCAGGAGTAGCTGAGCCTAAAAACAGCTT
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000050990.10
ENSMUST00000064595.15
ENSMUST00000090834.13
ENSMUST00000101562.11
CDS-3UTR GCA 90 bp CCAAATTTGTTTAAGCTGTTTTTAGGCTCAGCTACTCCTGGAAATACAGGATCCCGGGAAACGCTCCTTTaGGGCTGGGCTCTCCATCGA +
Preference number: 4 (lower is better)
Translates to: PNLFKLFLGSATPGNTGSRETLL*GWALHR
Trigger: TCGATGGAGAGCCCAGCCGCAAAGGAGCGTTTCCCG...GGATCCTGTATTTCCAGGAGTAGCTGAGCCTAAAAACAGCTTAAACAAATTTGG
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000050990.10
ENSMUST00000064595.15
ENSMUST00000090834.13
ENSMUST00000101562.11
CDS-3UTR CCA 90 bp TTTAGGAGTGATGCGATGGGCTTACATAGTGTAACTGGGATGTTTGGGGGCACTCCAAAGACACAGCATTaGACTGAAACTGGCTGGACC +
Preference number: 4 (lower is better)
Translates to: FRSDAMGLHSVTGMFGGTPKTQH*TETGWT
Trigger: GGTCCAGCCAGTTTCAGTCCAATGCTGTGTCTTTGG...AGTGCCCCCAAACATCCCAGTTACACTATGTAAGCCCATCGCATCACTCCTAAA
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000064595.15
ENSMUST00000090834.13
ENSMUST00000101562.11
CDS-3UTR CCA 90 bp AAGCTGTTTTTAGGCTCAGCTACTCCTGGAAATACAGGATCCTGGGTATACAGTCATTCTGCAAGATGCTaGGCCCAAAGCCCCTCTGCT +
Preference number: 4 (lower is better)
Translates to: KLFLGSATPGNTGSWVYSHSARC*AQSPSA
Trigger: AGCAGAGGGGCTTTGGGCCCAGCATCTTGCAGAATG...ACTGTATACCCAGGATCCTGTATTTCCAGGAGTAGCTGAGCCTAAAAACAGCTT
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000050990.10
ENSMUST00000064595.15
ENSMUST00000090834.13
ENSMUST00000101562.11
CDS-3UTR CCA 90 bp CCATATCCTAACCACGGCTCTTACCTGTGCTTAATGTTATTAAGTAGAGGTATGCAGGAGGGGGTGGTGTaGTGGTCAGGGGATCTTTGC +
Preference number: 4 (lower is better)
Translates to: PYPNHGSYLCLMLLSRGMQEGVV*WSGDLC
Trigger: GCAAAGATCCCCTGACCACCACACCACCCCCTCCTG...CATACCTCTACTTAATAACATTAAGCACAGGTAAGAGCCGTGGTTAGGATATGG
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000090834.13
ENSMUST00000101562.11
CDS-3UTR TCA 90 bp AGGTATGACTGTTCACAACATGGGTCCTACAAACATGCGGGAGATCATGGCAGCCCAGCCCAGAGATATTaGTTGCCTTCACAGATTTCT +
Preference number: 4 (lower is better)
Translates to: RYDCSQHGSYKHAGDHGSPAQRY*LPSQIS
Trigger: AGAAATCTGTGAAGGCAATCAATATCTCTGGGCTGG...GCTGCCATGATCTCCCGCATGTTTGTAGGACCCATGTTGTGAACAGTCATACCT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000064595.15
ENSMUST00000090834.13
ENSMUST00000101562.11
CDS-3UTR TCA 90 bp TTTAGGAGTGATGCGATGGGCTTACATAGTGTAACTGGGATGTTTGGGGGCACTTCTCGATGGAAGGCTTaGGGCTTTCTACTGCTTTCA +
Preference number: 4 (lower is better)
Translates to: FRSDAMGLHSVTGMFGGTSRWKA*GFLLLS
Trigger: TGAAAGCAGTAGAAAGCCTCAAGCCTTCCATCGAGA...AGTGCCCCCAAACATCCCAGTTACACTATGTAAGCCCATCGCATCACTCCTAAA
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000064595.15
ENSMUST00000090834.13
ENSMUST00000101562.11
CDS-3UTR TCA 90 bp TTTAGGAGTGATGCGATGGGCTTACATAGTGTAACTGGGATGTTTGGGGGCACTCCATGTACTTGGCTGTaGTGTAGTCCTTCCTTGCAA +
Preference number: 4 (lower is better)
Translates to: FRSDAMGLHSVTGMFGGTPCTWL*CSPSLQ
Trigger: TTGCAAGGAAGGACTACATCACAGCCAAGTACATGG...AGTGCCCCCAAACATCCCAGTTACACTATGTAAGCCCATCGCATCACTCCTAAA
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000064595.15
ENSMUST00000090834.13
ENSMUST00000101562.11
CDS-3UTR TCA 90 bp CCATATCCTAACCACGGCTCTTACCTGTGCTTAATGTTATTAAGTAGAGGTATGTCCGGTCCACAGATCTaGCTGCAAGATGGAGGGCTG +
Preference number: 4 (lower is better)
Translates to: PYPNHGSYLCLMLLSRGMSGPQI*LQDGGL
Trigger: CAGCCCTCCATCTTGCAGTCAGATCTGTGGACCGGA...CATACCTCTACTTAATAACATTAAGCACAGGTAAGAGCCGTGGTTAGGATATGG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000064595.15
ENSMUST00000090834.13
ENSMUST00000101562.11
CDS-3UTR TCA 90 bp CTCAGCTACTCCTGGAAATACAGGATCCTGGGTATACAGTTAAATAGCTTCTCACCGACAAGGCCTGAGTaGGCAGTTCCTCACAGTGTT +
Preference number: 4 (lower is better)
Translates to: LSYSWKYRILGIQLNSFSPTRPE*AVPHSV
Trigger: AACACTGTGAGGAACTGCTCACTCAGGCCTTGTCGG...TGAGAAGCTATTTAACTGTATACCCAGGATCCTGTATTTCCAGGAGTAGCTGAG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000050990.10
ENSMUST00000064595.15
ENSMUST00000090834.13
ENSMUST00000101562.11
CDS-3UTR TCA 90 bp GTTTTTAGGCTCAGCTACTCCTGGAAATACAGGATCCTGGGTATACAGTTAAATCCGATCCACCACTCCTaGTCCTCTTCCCCATCCACA +
Preference number: 4 (lower is better)
Translates to: VFRLSYSWKYRILGIQLNPIHHS*SSSPST
Trigger: TGTGGATGGGGAAGAGGATCAGGAGTGGTGGATCGG...ATTTAACTGTATACCCAGGATCCTGTATTTCCAGGAGTAGCTGAGCCTAAAAAC
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000050990.10
ENSMUST00000064595.15
ENSMUST00000090834.13
ENSMUST00000101562.11
CDS-3UTR GCA 90 bp GCTTACTGTGGCCCGCACCACATATTCTACCTGTGTGACGGGATGCTGAACGAGCCCAGAGATATTGATTaGCTTCACAGATTTCTTCAT +
Preference number: 4 (lower is better)
Translates to: AYCGPHHIFYLCDGMLNEPRDID*LHRFLH
Trigger: ATGAAGAAATCTGTGAAGGCAATCAATATCTCTGGG...CTCGTTCAGCATCCCGTCACACAGGTAGAATATGTGGTGCGGGCCACAGTAAGC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000064595.15
ENSMUST00000090834.13
ENSMUST00000101562.11
CDS-3UTR GCA 90 bp TTTAGGAGTGATGCGATGGGCTTACATAGTGTAACTGGGATGTTTGGGGGCACTAGGTACTCACACATCTaGAGCTGGAAGAACCGTCTT +
Preference number: 4 (lower is better)
Translates to: FRSDAMGLHSVTGMFGGTRYSHI*SWKNRL
Trigger: AAGACGGTTCTTCCAGCTGCAGATGTGTGAGTACCT...AGTGCCCCCAAACATCCCAGTTACACTATGTAAGCCCATCGCATCACTCCTAAA
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000064595.15
ENSMUST00000090834.13
ENSMUST00000101562.11
CDS-3UTR GCA 90 bp TTACATAGTGTAACTGGGATGTTTGGGGGCACTGGGCTCCCCAAGGTCTACAGATCTTCCTTGCTGTTCTaGAGTACAGACATCCATATC +
Preference number: 4 (lower is better)
Translates to: LHSVTGMFGGTGLPKVYRSSLLF*STDIHI
Trigger: GATATGGATGTCTGTACTGCAGAACAGCAAGGAAGA...TCTGTAGACCTTGGGGAGCCCAGTGCCCCCAAACATCCCAGTTACACTATGTAA
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000064595.15
ENSMUST00000101562.11
CDS-3UTR GCA 90 bp CTCAGCTACTCCTGGAAATACAGGATCCTGGGTATACAGTTAAATAGCTTCTCATTGCCCGTCATCCTCTaGACCTCCGAGATGATCTCC +
Preference number: 4 (lower is better)
Translates to: LSYSWKYRILGIQLNSFSLPVIL*TSEMIS
Trigger: GGAGATCATCTCGGAGGTGCAGAGGATGACGGGCAA...TGAGAAGCTATTTAACTGTATACCCAGGATCCTGTATTTCCAGGAGTAGCTGAG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000050990.10
ENSMUST00000064595.15
ENSMUST00000101562.11
CDS-3UTR GCA 90 bp CCAAATTTGTTTAAGCTGTTTTTAGGCTCAGCTACTCCTGGAAATACAGGATCCCGCAGCACACGTCATTaGCCGTCATCCTCTGCACCT +
Preference number: 4 (lower is better)
Translates to: PNLFKLFLGSATPGNTGSRSTRH*PSSSAP
Trigger: AGGTGCAGAGGATGACGGGCAATGACGTGTGCTGCG...GGATCCTGTATTTCCAGGAGTAGCTGAGCCTAAAAACAGCTTAAACAAATTTGG
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000050990.10
ENSMUST00000064595.15
ENSMUST00000101562.11
CDS-3UTR GCA 90 bp CCATATCCTAACCACGGCTCTTACCTGTGCTTAATGTTATTAAGTAGAGGTATGCGCAGCACACGTCATTaGCCGTCATCCTCTGCACCT +
Preference number: 4 (lower is better)
Translates to: PYPNHGSYLCLMLLSRGMRSTRH*PSSSAP
Trigger: AGGTGCAGAGGATGACGGGCAATGACGTGTGCTGCG...CATACCTCTACTTAATAACATTAAGCACAGGTAAGAGCCGTGGTTAGGATATGG
48% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000064595.15
ENSMUST00000101562.11
CDS-3UTR GCA 90 bp CGTTCAGGCCTTATGCTTGCCTCTTTCATTTCCCATATCCTAACCACGGCTCTTGATGTAGTCCTTCCTTaGAATCATGTCACTGCCTGG +
Preference number: 4 (lower is better)
Translates to: RSGLMLASFISHILTTALDVVLP*NHVTAW
Trigger: CCAGGCAGTGACATGATTGCAAGGAAGGACTACATC...AAGAGCCGTGGTTAGGATATGGGAAATGAAAGAGGCAAGCATAAGGCCTGAACG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000064595.15
ENSMUST00000090834.13
ENSMUST00000101562.11
CDS-3UTR GCA 90 bp TTGTTTAAGCTGTTTTTAGGCTCAGCTACTCCTGGAAATACAGGATCCTGGGTAGGGCTGTGCTGCCCTTaGCTGTCTGTTTATCCAGGT +
Preference number: 4 (lower is better)
Translates to: LFKLFLGSATPGNTGSWVGLCCP*LSVYPG
Trigger: ACCTGGATAAACAGACAGGCAAGGGCAGCACAGCCC...TACCCAGGATCCTGTATTTCCAGGAGTAGCTGAGCCTAAAAACAGCTTAAACAA
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000050990.10
ENSMUST00000064595.15
ENSMUST00000090834.13
ENSMUST00000101562.11
CDS-3UTR GCA 90 bp GACATTCCAGTTTGTCCTGTTTTCCTTGAAAGAAACAAAGAGAGAGCTCTGAGCGGGCTGTGCTGCCCTTaGCTGTCTGTTTATCCAGGT +
Preference number: 4 (lower is better)
Translates to: DIPVCPVFLERNKERALSGLCCP*LSVYPG
Trigger: ACCTGGATAAACAGACAGGCAAGGGCAGCACAGCCC...GCTCAGAGCTCTCTCTTTGTTTCTTTCAAGGAAAACAGGACAAACTGGAATGTC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000064595.15
ENSMUST00000090834.13
ENSMUST00000101562.11
CDS-3UTR GCA 90 bp TTGTTTAAGCTGTTTTTAGGCTCAGCTACTCCTGGAAATACAGGATCCTGGGTATCATCCAGGTCCTCGTaGAGCAGCCGCCATTCATAC +
Preference number: 4 (lower is better)
Translates to: LFKLFLGSATPGNTGSWVSSRSS*SSRHSY
Trigger: GTATGAATGGCGGCTGCTGCACGAGGACCTGGATGA...TACCCAGGATCCTGTATTTCCAGGAGTAGCTGAGCCTAAAAACAGCTTAAACAA
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000050990.10
ENSMUST00000064595.15
ENSMUST00000090834.13
ENSMUST00000101562.11
CDS-3UTR CCA 90 bp AAGCTGTTTTTAGGCTCAGCTACTCCTGGAAATACAGGATCCTGGGTATACAGTTCAGGGACTGCATCCTaGAGTAATGAACCCCCAGCT +
Preference number: 4 (lower is better)
Translates to: KLFLGSATPGNTGSWVYSSGTAS*SNEPPA
Trigger: AGCTGGGGGTTCATTACTCCAGGATGCAGTCCCTGA...ACTGTATACCCAGGATCCTGTATTTCCAGGAGTAGCTGAGCCTAAAAACAGCTT
48% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 3 transcripts:
ENSMUST00000050990.10
ENSMUST00000064595.15
ENSMUST00000101562.11
CDS-3UTR CCA 90 bp CTCAAAATAGCATTCTTGGCTGCAGGTCATTCTCCACCTCAGCAGATCACATTAAATCATGTCACTGCCTaGGTTGGGCTTGACTGGGTC +
Preference number: 4 (lower is better)
Translates to: LKIAFLAAGHSPPQQITLNHVTA*VGLDWV
Trigger: GACCCAGTCAAGCCCAACCCAGGCAGTGACATGATT...TAATGTGATCTGCTGAGGTGGAGAATGACCTGCAGCCAAGAATGCTATTTTGAG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000064595.15
ENSMUST00000090834.13
ENSMUST00000101562.11
CDS-3UTR CCA 90 bp ATGTCTTTAAAGGTGAATGGATGGCATTGGTGGACAAGGTCCAGGGTAGGGCGATCTCTCCTGACTCATTaGCTATCTCAATGGAGGCTT +
Preference number: 4 (lower is better)
Translates to: MSLKVNGWHWWTRSRVGRSLLTH*LSQWRL
Trigger: AAGCCTCCATTGAGATAGCCAATGAGTCAGGAGAGA...TCGCCCTACCCTGGACCTTGTCCACCAATGCCATCCATTCACCTTTAAAGACAT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000064595.15
ENSMUST00000090834.13
ENSMUST00000101562.11
CDS-3UTR CCA 90 bp GACATTCCAGTTTGTCCTGTTTTCCTTGAAAGAAACAAAGAGAGAGCTCTGAGCTGGACTGAAACTGGCTaGACCCCAGCTGGTAGAAGC +
Preference number: 4 (lower is better)
Translates to: DIPVCPVFLERNKERALSWTETG*TPAGRS
Trigger: GCTTCTACCAGCTGGGGTCCAGCCAGTTTCAGTCCA...GCTCAGAGCTCTCTCTTTGTTTCTTTCAAGGAAAACAGGACAAACTGGAATGTC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000064595.15
ENSMUST00000090834.13
ENSMUST00000101562.11
CDS-3UTR CCA 90 bp CTCAGCTACTCCTGGAAATACAGGATCCTGGGTATACAGTTAAATAGCTTCTCACATTCTGCAAGATGCTaGGCCCAAAGCCCCTCTGCT +
Preference number: 4 (lower is better)
Translates to: LSYSWKYRILGIQLNSFSHSARC*AQSPSA
Trigger: AGCAGAGGGGCTTTGGGCCCAGCATCTTGCAGAATG...TGAGAAGCTATTTAACTGTATACCCAGGATCCTGTATTTCCAGGAGTAGCTGAG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000050990.10
ENSMUST00000064595.15
ENSMUST00000090834.13
ENSMUST00000101562.11
CDS-3UTR CCA 90 bp AAGCTGTTTTTAGGCTCAGCTACTCCTGGAAATACAGGATCCTGGGTATACAGTGGCTGCCACTCAGGATaGCTCCATAGGTCTCATTCT +
Preference number: 4 (lower is better)
Translates to: KLFLGSATPGNTGSWVYSGCHSG*LHRSHS
Trigger: AGAATGAGACCTATGGAGCCATCCTGAGTGGCAGCC...ACTGTATACCCAGGATCCTGTATTTCCAGGAGTAGCTGAGCCTAAAAACAGCTT
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000050990.10
ENSMUST00000064595.15
ENSMUST00000090834.13
ENSMUST00000101562.11
CDS-3UTR CCA 90 bp CTCAAAATAGCATTCTTGGCTGCAGGTCATTCTCCACCTCAGCAGATCACATTAGTGCTTTCACTCGCTTaGGCTTTGACTTGGTCGCCT +
Preference number: 4 (lower is better)
Translates to: LKIAFLAAGHSPPQQITLVLSLA*ALTWSP
Trigger: AGGCGACCAAGTCAAAGCCCAAGCGAGTGAAAGCAC...TAATGTGATCTGCTGAGGTGGAGAATGACCTGCAGCCAAGAATGCTATTTTGAG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000064595.15
ENSMUST00000090834.13
ENSMUST00000101562.11
CDS-3UTR CCA 90 bp AAGCTGTTTTTAGGCTCAGCTACTCCTGGAAATACAGGATCCTGGGTATACAGTGAAAGTCAGCTCGTCTaGGTTGTCAGCCACGCAGTT +
Preference number: 4 (lower is better)
Translates to: KLFLGSATPGNTGSWVYSESQLV*VVSHAV
Trigger: AACTGCGTGGCTGACAACCCAGACGAGCTGACTTTC...ACTGTATACCCAGGATCCTGTATTTCCAGGAGTAGCTGAGCCTAAAAACAGCTT
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000050990.10
ENSMUST00000064595.15
ENSMUST00000090834.13
ENSMUST00000101562.11
CDS-3UTR TCA 90 bp TTACATAGTGTAACTGGGATGTTTGGGGGCACTGGGCTCCCCAAGGTCTACAGATACTTGATCAGATTCTaGAGCAAATCCACTCCCTTT +
Preference number: 4 (lower is better)
Translates to: LHSVTGMFGGTGLPKVYRYLIRF*SKSTPF
Trigger: AAAGGGAGTGGATTTGCTTCAGAATCTGATCAAGTA...TCTGTAGACCTTGGGGAGCCCAGTGCCCCCAAACATCCCAGTTACACTATGTAA
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000064595.15
ENSMUST00000090834.13
ENSMUST00000101562.11
CDS-3UTR TCA 90 bp ATGTCTTTAAAGGTGAATGGATGGCATTGGTGGACAAGGTCCAGGGTAGGGCGAGGGCGTGAAAGTACTTaGTCAGATTCTGAAGCAAAT +
Preference number: 4 (lower is better)
Translates to: MSLKVNGWHWWTRSRVGRGREST*SDSEAN
Trigger: ATTTGCTTCAGAATCTGATCAAGTACTTTCACGCCC...TCGCCCTACCCTGGACCTTGTCCACCAATGCCATCCATTCACCTTTAAAGACAT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000064595.15
ENSMUST00000090834.13
ENSMUST00000101562.11
CDS-3UTR TCA 90 bp AGGTATGACTGTTCACAACATGGGTCCTACAAACATGCGGGAGATCATGGCAGCTTCCACCTGCAATGCTaGCTTCAAAATATCTCGAAG +
Preference number: 4 (lower is better)
Translates to: RYDCSQHGSYKHAGDHGSFHLQC*LQNISK
Trigger: CTTCGAGATATTTTGAAGTCAGCATTGCAGGTGGAA...GCTGCCATGATCTCCCGCATGTTTGTAGGACCCATGTTGTGAACAGTCATACCT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000064595.15
ENSMUST00000090834.13
ENSMUST00000101562.11
CDS-3UTR TCA 90 bp CTCAGCTACTCCTGGAAATACAGGATCCTGGGTATACAGTTAAATAGCTTCTCATCTGCACCTCCGAGATaGTCTCCTTGGTCAGCTCTT +
Preference number: 4 (lower is better)
Translates to: LSYSWKYRILGIQLNSFSSAPPR*SPWSAL
Trigger: AAGAGCTGACCAAGGAGATCATCTCGGAGGTGCAGA...TGAGAAGCTATTTAACTGTATACCCAGGATCCTGTATTTCCAGGAGTAGCTGAG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000050990.10
ENSMUST00000064595.15
ENSMUST00000101562.11
CDS-3UTR TCA 90 bp TGCTTTCCTTTCAGTTGCTTTCTCTTCTCAGTTTGCAAAGAGCGAGTAACAGGAAAATGTCTCTGGTCTTaGCGGCCTCGCAAAGGCTGT +
Preference number: 4 (lower is better)
Translates to: CFPFSCFLFSVCKERVTGKCLWS*RPRKGC
Trigger: ACAGCCTTTGCGAGGCCGTCAAGACCAGAGACATTT...TCCTGTTACTCGCTCTTTGCAAACTGAGAAGAGAAAGCAACTGAAAGGAAAGCA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000064595.15
ENSMUST00000090834.13
ENSMUST00000101562.11
CDS-3UTR TCA 90 bp CTCAGCTACTCCTGGAAATACAGGATCCTGGGTATACAGTTAAATAGCTTCTCAAAATGTCTCTGGTCTTaGCGGCCTCGCAAAGGCTGT +
Preference number: 4 (lower is better)
Translates to: LSYSWKYRILGIQLNSFSKCLWS*RPRKGC
Trigger: ACAGCCTTTGCGAGGCCGTCAAGACCAGAGACATTT...TGAGAAGCTATTTAACTGTATACCCAGGATCCTGTATTTCCAGGAGTAGCTGAG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000050990.10
ENSMUST00000064595.15
ENSMUST00000090834.13
ENSMUST00000101562.11
CDS-3UTR TCA 90 bp AAGCTGTTTTTAGGCTCAGCTACTCCTGGAAATACAGGATCCTGGGTATACAGTCAACGGGGTCTCTCCTaGCTCATTGGCTATCTCAAT +
Preference number: 4 (lower is better)
Translates to: KLFLGSATPGNTGSWVYSQRGLS*LIGYLN
Trigger: ATTGAGATAGCCAATGAGTCAGGAGAGACCCCGTTG...ACTGTATACCCAGGATCCTGTATTTCCAGGAGTAGCTGAGCCTAAAAACAGCTT
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000050990.10
ENSMUST00000064595.15
ENSMUST00000090834.13
ENSMUST00000101562.11
CDS-3UTR TCA 90 bp CTCAAAATAGCATTCTTGGCTGCAGGTCATTCTCCACCTCAGCAGATCACATTACAACGGGGTCTCTCCTaGCTCATTGGCTATCTCAAT +
Preference number: 4 (lower is better)
Translates to: LKIAFLAAGHSPPQQITLQRGLS*LIGYLN
Trigger: ATTGAGATAGCCAATGAGTCAGGAGAGACCCCGTTG...TAATGTGATCTGCTGAGGTGGAGAATGACCTGCAGCCAAGAATGCTATTTTGAG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000064595.15
ENSMUST00000090834.13
ENSMUST00000101562.11
CDS-3UTR TCA 90 bp CCAAATTTGTTTAAGCTGTTTTTAGGCTCAGCTACTCCTGGAAATACAGGATCCCCGACAAGGCCTGAGTaGGCAGTTCCTCACAGTGTT +
Preference number: 4 (lower is better)
Translates to: PNLFKLFLGSATPGNTGSPTRPE*AVPHSV
Trigger: AACACTGTGAGGAACTGCTCACTCAGGCCTTGTCGG...GGATCCTGTATTTCCAGGAGTAGCTGAGCCTAAAAACAGCTTAAACAAATTTGG
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000050990.10
ENSMUST00000064595.15
ENSMUST00000090834.13
ENSMUST00000101562.11
CDS-3UTR TCA 90 bp AAGCTGTTTTTAGGCTCAGCTACTCCTGGAAATACAGGATCCTGGGTATACAGTTCTGCTTGTCCTTGGTaGGGTTTGCAGTATCTCTGG +
Preference number: 4 (lower is better)
Translates to: KLFLGSATPGNTGSWVYSSACPW*GLQYLW
Trigger: CCAGAGATACTGCAAACCTCACCAAGGACAAGCAGA...ACTGTATACCCAGGATCCTGTATTTCCAGGAGTAGCTGAGCCTAAAAACAGCTT
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000050990.10
ENSMUST00000064595.15
ENSMUST00000090834.13
ENSMUST00000101562.11
CDS-3UTR TCA 90 bp ACCAATGTCGGAATTGGGCTAAGGAAAACTAAGAATCCCCCAAATTTGTTTAAGCCGATCCACCACTCCTaGTCCTCTTCCCCATCCACA +
Preference number: 4 (lower is better)
Translates to: TNVGIGLRKTKNPPNLFKPIHHS*SSSPST
Trigger: TGTGGATGGGGAAGAGGATCAGGAGTGGTGGATCGG...CTTAAACAAATTTGGGGGATTCTTAGTTTTCCTTAGCCCAATTCCGACATTGGT
47% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 4 transcripts:
ENSMUST00000050990.10
ENSMUST00000064595.15
ENSMUST00000090834.13
ENSMUST00000101562.11
CDS-3UTR GCA 90 bp AAGCTGTTTTTAGGCTCAGCTACTCCTGGAAATACAGGATCCTGGGTATACAGTCTTCTCCATCTCCTCTaGAATCTCAGCCCCGCTTAT +
Preference number: 4 (lower is better)
Translates to: KLFLGSATPGNTGSWVYSLLHLL*NLSPAY
Trigger: ATAAGCGGGGCTGAGATTGCAGAGGAGATGGAGAAG...ACTGTATACCCAGGATCCTGTATTTCCAGGAGTAGCTGAGCCTAAAAACAGCTT
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000050990.10
ENSMUST00000064595.15
ENSMUST00000090834.13
ENSMUST00000101562.11
CDS-3UTR GCA 90 bp AAGCTGTTTTTAGGCTCAGCTACTCCTGGAAATACAGGATCCTGGGTATACAGTGAACACTTCCTCTTCTaGCACACTTTCCGGATCCCA +
Preference number: 4 (lower is better)
Translates to: KLFLGSATPGNTGSWVYSEHFLF*HTFRIP
Trigger: TGGGATCCGGAAAGTGTGGCAGAAGAGGAAGTGTTC...ACTGTATACCCAGGATCCTGTATTTCCAGGAGTAGCTGAGCCTAAAAACAGCTT
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000050990.10
ENSMUST00000064595.15
ENSMUST00000090834.13
ENSMUST00000101562.11
CDS-3UTR GCA 90 bp GTTTTTAGGCTCAGCTACTCCTGGAAATACAGGATCCTGGGTATACAGTTAAATTCCCAGAGCACTCGATaGAAGTCAGGATGCCCAGGT +
Preference number: 4 (lower is better)
Translates to: VFRLSYSWKYRILGIQLNSQSTR*KSGCPG
Trigger: ACCTGGGCATCCTGACTTGCATCGAGTGCTCTGGGA...ATTTAACTGTATACCCAGGATCCTGTATTTCCAGGAGTAGCTGAGCCTAAAAAC
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000050990.10
ENSMUST00000064595.15
ENSMUST00000101562.11
CDS-3UTR GCA 90 bp CCATATCCTAACCACGGCTCTTACCTGTGCTTAATGTTATTAAGTAGAGGTATGGGGCTGTGCTGCCCTTaGCTGTCTGTTTATCCAGGT +
Preference number: 4 (lower is better)
Translates to: PYPNHGSYLCLMLLSRGMGLCCP*LSVYPG
Trigger: ACCTGGATAAACAGACAGGCAAGGGCAGCACAGCCC...CATACCTCTACTTAATAACATTAAGCACAGGTAAGAGCCGTGGTTAGGATATGG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000064595.15
ENSMUST00000090834.13
ENSMUST00000101562.11
CDS-3UTR GCA 90 bp GTTTTTAGGCTCAGCTACTCCTGGAAATACAGGATCCTGGGTATACAGTTAAATGGCCCAAAGCCCCTCTaGTTGTCCTTGGTGAGGTTT +
Preference number: 4 (lower is better)
Translates to: VFRLSYSWKYRILGIQLNGPKPL*LSLVRF
Trigger: AAACCTCACCAAGGACAAGCAGAGGGGCTTTGGGCC...ATTTAACTGTATACCCAGGATCCTGTATTTCCAGGAGTAGCTGAGCCTAAAAAC
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000050990.10
ENSMUST00000064595.15
ENSMUST00000090834.13
ENSMUST00000101562.11
CDS-3UTR GCA 90 bp CCAAATTTGTTTAAGCTGTTTTTAGGCTCAGCTACTCCTGGAAATACAGGATCCGGCCCAAAGCCCCTCTaGTTGTCCTTGGTGAGGTTT +
Preference number: 4 (lower is better)
Translates to: PNLFKLFLGSATPGNTGSGPKPL*LSLVRF
Trigger: AAACCTCACCAAGGACAAGCAGAGGGGCTTTGGGCC...GGATCCTGTATTTCCAGGAGTAGCTGAGCCTAAAAACAGCTTAAACAAATTTGG
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000050990.10
ENSMUST00000064595.15
ENSMUST00000090834.13
ENSMUST00000101562.11
CDS-3UTR GCA 90 bp CTCAGCTACTCCTGGAAATACAGGATCCTGGGTATACAGTTAAATAGCTTCTCATCTCATTCTGCAAGATaGTGGGCCCAAAGCCCCTCT +
Preference number: 4 (lower is better)
Translates to: LSYSWKYRILGIQLNSFSSHSAR*WAQSPS
Trigger: AGAGGGGCTTTGGGCCCAGCATCTTGCAGAATGAGA...TGAGAAGCTATTTAACTGTATACCCAGGATCCTGTATTTCCAGGAGTAGCTGAG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000050990.10
ENSMUST00000064595.15
ENSMUST00000090834.13
ENSMUST00000101562.11
CDS-3UTR GCA 90 bp TTGTTTAAGCTGTTTTTAGGCTCAGCTACTCCTGGAAATACAGGATCCTGGGTATCTCATTCTGCAAGATaGTGGGCCCAAAGCCCCTCT +
Preference number: 4 (lower is better)
Translates to: LFKLFLGSATPGNTGSWVSHSAR*WAQSPS
Trigger: AGAGGGGCTTTGGGCCCAGCATCTTGCAGAATGAGA...TACCCAGGATCCTGTATTTCCAGGAGTAGCTGAGCCTAAAAACAGCTTAAACAA
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000050990.10
ENSMUST00000064595.15
ENSMUST00000090834.13
ENSMUST00000101562.11
CDS-3UTR GCA 90 bp GACATTCCAGTTTGTCCTGTTTTCCTTGAAAGAAACAAAGAGAGAGCTCTGAGCTCTGACGAAGATCGCTaGCTGCTGATACCGTCCACA +
Preference number: 4 (lower is better)
Translates to: DIPVCPVFLERNKERALSSDEDR*LLIPST
Trigger: TGTGGACGGTATCAGCAGGCAGCGATCTTCGTCAGA...GCTCAGAGCTCTCTCTTTGTTTCTTTCAAGGAAAACAGGACAAACTGGAATGTC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000064595.15
CDS-3UTR CCA 90 bp CTCAAAATAGCATTCTTGGCTGCAGGTCATTCTCCACCTCAGCAGATCACATTAGTACGAATCATCCCGTaGAGCTTGGCATGCTCCTTT +
Preference number: 4 (lower is better)
Translates to: LKIAFLAAGHSPPQQITLVRIIP*SLACSF
Trigger: AAAGGAGCATGCCAAGCTCCACGGGATGATTCGTAC...TAATGTGATCTGCTGAGGTGGAGAATGACCTGCAGCCAAGAATGCTATTTTGAG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000064595.15
ENSMUST00000090834.13
ENSMUST00000101562.11
CDS-3UTR CCA 90 bp TGCTTTCCTTTCAGTTGCTTTCTCTTCTCAGTTTGCAAAGAGCGAGTAACAGGATCAGGGACTGCATCCTaGAGTAATGAACCCCCAGCT +
Preference number: 4 (lower is better)
Translates to: CFPFSCFLFSVCKERVTGSGTAS*SNEPPA
Trigger: AGCTGGGGGTTCATTACTCCAGGATGCAGTCCCTGA...TCCTGTTACTCGCTCTTTGCAAACTGAGAAGAGAAAGCAACTGAAAGGAAAGCA
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000064595.15
ENSMUST00000101562.11
CDS-3UTR CCA 90 bp TTGTTTAAGCTGTTTTTAGGCTCAGCTACTCCTGGAAATACAGGATCCTGGGTAAATCATGTCACTGCCTaGGTTGGGCTTGACTGGGTC +
Preference number: 4 (lower is better)
Translates to: LFKLFLGSATPGNTGSWVNHVTA*VGLDWV
Trigger: GACCCAGTCAAGCCCAACCCAGGCAGTGACATGATT...TACCCAGGATCCTGTATTTCCAGGAGTAGCTGAGCCTAAAAACAGCTTAAACAA
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000050990.10
ENSMUST00000064595.15
ENSMUST00000090834.13
ENSMUST00000101562.11
CDS-3UTR CCA 90 bp CTCAGCTACTCCTGGAAATACAGGATCCTGGGTATACAGTTAAATAGCTTCTCAAATCATGTCACTGCCTaGGTTGGGCTTGACTGGGTC +
Preference number: 4 (lower is better)
Translates to: LSYSWKYRILGIQLNSFSNHVTA*VGLDWV
Trigger: GACCCAGTCAAGCCCAACCCAGGCAGTGACATGATT...TGAGAAGCTATTTAACTGTATACCCAGGATCCTGTATTTCCAGGAGTAGCTGAG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000050990.10
ENSMUST00000064595.15
ENSMUST00000090834.13
ENSMUST00000101562.11
CDS-3UTR CCA 90 bp CTCAAAATAGCATTCTTGGCTGCAGGTCATTCTCCACCTCAGCAGATCACATTAATGCCCATTGGCCAGTaGGATTTTCTCTGTCAGGTC +
Preference number: 4 (lower is better)
Translates to: LKIAFLAAGHSPPQQITLMPIGQ*DFLCQV
Trigger: GACCTGACAGAGAAAATCCCACTGGCCAATGGGCAT...TAATGTGATCTGCTGAGGTGGAGAATGACCTGCAGCCAAGAATGCTATTTTGAG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000064595.15
ENSMUST00000090834.13
ENSMUST00000101562.11
CDS-3UTR CCA 90 bp TTGTTTAAGCTGTTTTTAGGCTCAGCTACTCCTGGAAATACAGGATCCTGGGTACTGGCTCATGCCCATTaGCCAGTGGGATTTTCTCTG +
Preference number: 4 (lower is better)
Translates to: LFKLFLGSATPGNTGSWVLAHAH*PVGFSL
Trigger: CAGAGAAAATCCCACTGGCCAATGGGCATGAGCCAG...TACCCAGGATCCTGTATTTCCAGGAGTAGCTGAGCCTAAAAACAGCTTAAACAA
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000050990.10
ENSMUST00000064595.15
ENSMUST00000090834.13
ENSMUST00000101562.11
CDS-3UTR CCA 90 bp CTCAGCTACTCCTGGAAATACAGGATCCTGGGTATACAGTTAAATAGCTTCTCACTGGCTCATGCCCATTaGCCAGTGGGATTTTCTCTG +
Preference number: 4 (lower is better)
Translates to: LSYSWKYRILGIQLNSFSLAHAH*PVGFSL
Trigger: CAGAGAAAATCCCACTGGCCAATGGGCATGAGCCAG...TGAGAAGCTATTTAACTGTATACCCAGGATCCTGTATTTCCAGGAGTAGCTGAG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000050990.10
ENSMUST00000064595.15
ENSMUST00000090834.13
ENSMUST00000101562.11
CDS-3UTR CCA 90 bp CTCAGCTACTCCTGGAAATACAGGATCCTGGGTATACAGTTAAATAGCTTCTCAGATCTGACTGCAAGATaGAGGGCTGTCTCATCTGGC +
Preference number: 4 (lower is better)
Translates to: LSYSWKYRILGIQLNSFSDLTAR*RAVSSG
Trigger: GCCAGATGAGACAGCCCTCCATCTTGCAGTCAGATC...TGAGAAGCTATTTAACTGTATACCCAGGATCCTGTATTTCCAGGAGTAGCTGAG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000050990.10
ENSMUST00000064595.15
ENSMUST00000090834.13
ENSMUST00000101562.11
CDS-3UTR CCA 90 bp TTGTTTAAGCTGTTTTTAGGCTCAGCTACTCCTGGAAATACAGGATCCTGGGTAGATCTGACTGCAAGATaGAGGGCTGTCTCATCTGGC +
Preference number: 4 (lower is better)
Translates to: LFKLFLGSATPGNTGSWVDLTAR*RAVSSG
Trigger: GCCAGATGAGACAGCCCTCCATCTTGCAGTCAGATC...TACCCAGGATCCTGTATTTCCAGGAGTAGCTGAGCCTAAAAACAGCTTAAACAA
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000050990.10
ENSMUST00000064595.15
ENSMUST00000090834.13
ENSMUST00000101562.11
CDS-3UTR CCA 90 bp GTTTTTAGGCTCAGCTACTCCTGGAAATACAGGATCCTGGGTATACAGTTAAATTGGACTGAAACTGGCTaGACCCCAGCTGGTAGAAGC +
Preference number: 4 (lower is better)
Translates to: VFRLSYSWKYRILGIQLNWTETG*TPAGRS
Trigger: GCTTCTACCAGCTGGGGTCCAGCCAGTTTCAGTCCA...ATTTAACTGTATACCCAGGATCCTGTATTTCCAGGAGTAGCTGAGCCTAAAAAC
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000050990.10
ENSMUST00000064595.15
ENSMUST00000090834.13
ENSMUST00000101562.11
CDS-3UTR CCA 90 bp CTCAGCTACTCCTGGAAATACAGGATCCTGGGTATACAGTTAAATAGCTTCTCAGAAAGTCAGCTCGTCTaGGTTGTCAGCCACGCAGTT +
Preference number: 4 (lower is better)
Translates to: LSYSWKYRILGIQLNSFSESQLV*VVSHAV
Trigger: AACTGCGTGGCTGACAACCCAGACGAGCTGACTTTC...TGAGAAGCTATTTAACTGTATACCCAGGATCCTGTATTTCCAGGAGTAGCTGAG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000050990.10
ENSMUST00000064595.15
ENSMUST00000090834.13
ENSMUST00000101562.11
CDS-3UTR CCA 90 bp TTGTTTAAGCTGTTTTTAGGCTCAGCTACTCCTGGAAATACAGGATCCTGGGTAGAAAGTCAGCTCGTCTaGGTTGTCAGCCACGCAGTT +
Preference number: 4 (lower is better)
Translates to: LFKLFLGSATPGNTGSWVESQLV*VVSHAV
Trigger: AACTGCGTGGCTGACAACCCAGACGAGCTGACTTTC...TACCCAGGATCCTGTATTTCCAGGAGTAGCTGAGCCTAAAAACAGCTTAAACAA
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000050990.10
ENSMUST00000064595.15
ENSMUST00000090834.13
ENSMUST00000101562.11
CDS-3UTR TCA 90 bp CGTTCAGGCCTTATGCTTGCCTCTTTCATTTCCCATATCCTAACCACGGCTCTTTTCCACCTGCAATGCTaGCTTCAAAATATCTCGAAG +
Preference number: 4 (lower is better)
Translates to: RSGLMLASFISHILTTALFHLQC*LQNISK
Trigger: CTTCGAGATATTTTGAAGTCAGCATTGCAGGTGGAA...AAGAGCCGTGGTTAGGATATGGGAAATGAAAGAGGCAAGCATAAGGCCTGAACG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000064595.15
ENSMUST00000090834.13
ENSMUST00000101562.11
CDS-3UTR TCA 90 bp GTTTTTAGGCTCAGCTACTCCTGGAAATACAGGATCCTGGGTATACAGTTAAATTCTGCACCTCCGAGATaGTCTCCTTGGTCAGCTCTT +
Preference number: 4 (lower is better)
Translates to: VFRLSYSWKYRILGIQLNSAPPR*SPWSAL
Trigger: AAGAGCTGACCAAGGAGATCATCTCGGAGGTGCAGA...ATTTAACTGTATACCCAGGATCCTGTATTTCCAGGAGTAGCTGAGCCTAAAAAC
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000050990.10
ENSMUST00000064595.15
ENSMUST00000101562.11
CDS-3UTR TCA 90 bp CCATATCCTAACCACGGCTCTTACCTGTGCTTAATGTTATTAAGTAGAGGTATGTCTGCACCTCCGAGATaGTCTCCTTGGTCAGCTCTT +
Preference number: 4 (lower is better)
Translates to: PYPNHGSYLCLMLLSRGMSAPPR*SPWSAL
Trigger: AAGAGCTGACCAAGGAGATCATCTCGGAGGTGCAGA...CATACCTCTACTTAATAACATTAAGCACAGGTAAGAGCCGTGGTTAGGATATGG
46% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000064595.15
ENSMUST00000101562.11
CDS-3UTR TCA 90 bp CCAAATTTGTTTAAGCTGTTTTTAGGCTCAGCTACTCCTGGAAATACAGGATCCAAATGTCTCTGGTCTTaGCGGCCTCGCAAAGGCTGT +
Preference number: 4 (lower is better)
Translates to: PNLFKLFLGSATPGNTGSKCLWS*RPRKGC
Trigger: ACAGCCTTTGCGAGGCCGTCAAGACCAGAGACATTT...GGATCCTGTATTTCCAGGAGTAGCTGAGCCTAAAAACAGCTTAAACAAATTTGG
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000050990.10
ENSMUST00000064595.15
ENSMUST00000090834.13
ENSMUST00000101562.11
CDS-3UTR TCA 90 bp CTCAGCTACTCCTGGAAATACAGGATCCTGGGTATACAGTTAAATAGCTTCTCATCTGCTTGTCCTTGGTaGGGTTTGCAGTATCTCTGG +
Preference number: 4 (lower is better)
Translates to: LSYSWKYRILGIQLNSFSSACPW*GLQYLW
Trigger: CCAGAGATACTGCAAACCTCACCAAGGACAAGCAGA...TGAGAAGCTATTTAACTGTATACCCAGGATCCTGTATTTCCAGGAGTAGCTGAG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000050990.10
ENSMUST00000064595.15
ENSMUST00000090834.13
ENSMUST00000101562.11
CDS-3UTR TCA 90 bp GACATTCCAGTTTGTCCTGTTTTCCTTGAAAGAAACAAAGAGAGAGCTCTGAGCTCTGCTTGTCCTTGGTaGGGTTTGCAGTATCTCTGG +
Preference number: 4 (lower is better)
Translates to: DIPVCPVFLERNKERALSSACPW*GLQYLW
Trigger: CCAGAGATACTGCAAACCTCACCAAGGACAAGCAGA...GCTCAGAGCTCTCTCTTTGTTTCTTTCAAGGAAAACAGGACAAACTGGAATGTC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000064595.15
ENSMUST00000090834.13
ENSMUST00000101562.11
CDS-3UTR GCA 90 bp TTGTTTAAGCTGTTTTTAGGCTCAGCTACTCCTGGAAATACAGGATCCTGGGTAGAACACTTCCTCTTCTaGCACACTTTCCGGATCCCA +
Preference number: 4 (lower is better)
Translates to: LFKLFLGSATPGNTGSWVEHFLF*HTFRIP
Trigger: TGGGATCCGGAAAGTGTGGCAGAAGAGGAAGTGTTC...TACCCAGGATCCTGTATTTCCAGGAGTAGCTGAGCCTAAAAACAGCTTAAACAA
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000050990.10
ENSMUST00000064595.15
ENSMUST00000090834.13
ENSMUST00000101562.11
CDS-3UTR GCA 90 bp TTGTTTAAGCTGTTTTTAGGCTCAGCTACTCCTGGAAATACAGGATCCTGGGTATCCTCACAGTGTTCGTaGTTGAGCCGCTTAGCAATG +
Preference number: 4 (lower is better)
Translates to: LFKLFLGSATPGNTGSWVSSQCS*LSRLAM
Trigger: CATTGCTAAGCGGCTCAAGCACGAACACTGTGAGGA...TACCCAGGATCCTGTATTTCCAGGAGTAGCTGAGCCTAAAAACAGCTTAAACAA
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000050990.10
ENSMUST00000064595.15
ENSMUST00000090834.13
ENSMUST00000101562.11
CDS-3UTR GCA 90 bp TGCTTTCCTTTCAGTTGCTTTCTCTTCTCAGTTTGCAAAGAGCGAGTAACAGGATCCTCACAGTGTTCGTaGTTGAGCCGCTTAGCAATG +
Preference number: 4 (lower is better)
Translates to: CFPFSCFLFSVCKERVTGSSQCS*LSRLAM
Trigger: CATTGCTAAGCGGCTCAAGCACGAACACTGTGAGGA...TCCTGTTACTCGCTCTTTGCAAACTGAGAAGAGAAAGCAACTGAAAGGAAAGCA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000064595.15
ENSMUST00000090834.13
ENSMUST00000101562.11
CDS-3UTR GCA 90 bp AAGCTGTTTTTAGGCTCAGCTACTCCTGGAAATACAGGATCCTGGGTATACAGTGTCCTTGGTGAGGTTTaGAGTATCTCTGGCCAAAGA +
Preference number: 4 (lower is better)
Translates to: KLFLGSATPGNTGSWVYSVLGEV*SISGQR
Trigger: TCTTTGGCCAGAGATACTGCAAACCTCACCAAGGAC...ACTGTATACCCAGGATCCTGTATTTCCAGGAGTAGCTGAGCCTAAAAACAGCTT
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000050990.10
ENSMUST00000064595.15
ENSMUST00000090834.13
ENSMUST00000101562.11
CDS-3UTR GCA 90 bp GTTTTTAGGCTCAGCTACTCCTGGAAATACAGGATCCTGGGTATACAGTTAAATTCTCATTCTGCAAGATaGTGGGCCCAAAGCCCCTCT +
Preference number: 4 (lower is better)
Translates to: VFRLSYSWKYRILGIQLNSHSAR*WAQSPS
Trigger: AGAGGGGCTTTGGGCCCAGCATCTTGCAGAATGAGA...ATTTAACTGTATACCCAGGATCCTGTATTTCCAGGAGTAGCTGAGCCTAAAAAC
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000050990.10
ENSMUST00000064595.15
ENSMUST00000090834.13
ENSMUST00000101562.11
CDS-3UTR CCA 90 bp AAGCTGTTTTTAGGCTCAGCTACTCCTGGAAATACAGGATCCTGGGTATACAGTTCACACATCTGCAGCTaGAAGAACCGTCTTTCCTTC +
Preference number: 4 (lower is better)
Translates to: KLFLGSATPGNTGSWVYSSHICS*KNRLSF
Trigger: GAAGGAAAGACGGTTCTTCCAGCTGCAGATGTGTGA...ACTGTATACCCAGGATCCTGTATTTCCAGGAGTAGCTGAGCCTAAAAACAGCTT
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000050990.10
ENSMUST00000064595.15
ENSMUST00000090834.13
ENSMUST00000101562.11
CDS-3UTR CCA 90 bp CCAAATTTGTTTAAGCTGTTTTTAGGCTCAGCTACTCCTGGAAATACAGGATCCGGATTGGTCTTCACCTaGCAGGTTAGCAGGTTGAGC +
Preference number: 4 (lower is better)
Translates to: PNLFKLFLGSATPGNTGSGLVFT*QVSRLS
Trigger: GCTCAACCTGCTAACCTGCCAGGTGAAGACCAATCC...GGATCCTGTATTTCCAGGAGTAGCTGAGCCTAAAAACAGCTTAAACAAATTTGG
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000050990.10
ENSMUST00000064595.15
ENSMUST00000101562.11
CDS-3UTR CCA 90 bp GACATTCCAGTTTGTCCTGTTTTCCTTGAAAGAAACAAAGAGAGAGCTCTGAGCATGCCCATTGGCCAGTaGGATTTTCTCTGTCAGGTC +
Preference number: 4 (lower is better)
Translates to: DIPVCPVFLERNKERALSMPIGQ*DFLCQV
Trigger: GACCTGACAGAGAAAATCCCACTGGCCAATGGGCAT...GCTCAGAGCTCTCTCTTTGTTTCTTTCAAGGAAAACAGGACAAACTGGAATGTC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000064595.15
ENSMUST00000090834.13
ENSMUST00000101562.11
CDS-3UTR CCA 90 bp GTTTTTAGGCTCAGCTACTCCTGGAAATACAGGATCCTGGGTATACAGTTAAATCTGGCTCATGCCCATTaGCCAGTGGGATTTTCTCTG +
Preference number: 4 (lower is better)
Translates to: VFRLSYSWKYRILGIQLNLAHAH*PVGFSL
Trigger: CAGAGAAAATCCCACTGGCCAATGGGCATGAGCCAG...ATTTAACTGTATACCCAGGATCCTGTATTTCCAGGAGTAGCTGAGCCTAAAAAC
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000050990.10
ENSMUST00000064595.15
ENSMUST00000090834.13
ENSMUST00000101562.11
CDS-3UTR CCA 90 bp TTGTTTAAGCTGTTTTTAGGCTCAGCTACTCCTGGAAATACAGGATCCTGGGTACCAAAGACACAGCATTaGACTGAAACTGGCTGGACC +
Preference number: 4 (lower is better)
Translates to: LFKLFLGSATPGNTGSWVPKTQH*TETGWT
Trigger: GGTCCAGCCAGTTTCAGTCCAATGCTGTGTCTTTGG...TACCCAGGATCCTGTATTTCCAGGAGTAGCTGAGCCTAAAAACAGCTTAAACAA
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000050990.10
ENSMUST00000064595.15
ENSMUST00000090834.13
ENSMUST00000101562.11
3UTR CAA 72 bp AAGAAACAAAGAGAGAGCTCTGAGCTTGTAAGAGCCTaGCACAAAGAGCATAAAGAAGGGGCTGCTTCGATC +
Preference number: 4 (lower is better)
Translates to: KKQRESSELVRA*HKEHKEGAASI
Trigger: GATCGAAGCAGCCCCTTCTTTATGCTCTTTGTGCAAGGCTCTTACAAGCTCAGAGCTCTCTCTTTGTTTCTT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000064595.15
ENSMUST00000090834.13
ENSMUST00000101562.11
CDS-3UTR TCA 90 bp CTCAGCTACTCCTGGAAATACAGGATCCTGGGTATACAGTTAAATAGCTTCTCACCGTCAACTCCTTGGTaGACACAGAGAACTTCAGAA +
Preference number: 4 (lower is better)
Translates to: LSYSWKYRILGIQLNSFSPSTPW*TQRTSE
Trigger: TTCTGAAGTTCTCTGTGTTCACCAAGGAGTTGACGG...TGAGAAGCTATTTAACTGTATACCCAGGATCCTGTATTTCCAGGAGTAGCTGAG
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000050990.10
ENSMUST00000064595.15
ENSMUST00000090834.13
ENSMUST00000101562.11
CDS-3UTR TCA 90 bp CTCAGCTACTCCTGGAAATACAGGATCCTGGGTATACAGTTAAATAGCTTCTCATCTCGATGGAAGGCTTaGGGCTTTCTACTGCTTTCA +
Preference number: 4 (lower is better)
Translates to: LSYSWKYRILGIQLNSFSSRWKA*GFLLLS
Trigger: TGAAAGCAGTAGAAAGCCTCAAGCCTTCCATCGAGA...TGAGAAGCTATTTAACTGTATACCCAGGATCCTGTATTTCCAGGAGTAGCTGAG
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000050990.10
ENSMUST00000064595.15
ENSMUST00000090834.13
ENSMUST00000101562.11
CDS-3UTR TCA 90 bp GACATTCCAGTTTGTCCTGTTTTCCTTGAAAGAAACAAAGAGAGAGCTCTGAGCTCTCGATGGAAGGCTTaGGGCTTTCTACTGCTTTCA +
Preference number: 4 (lower is better)
Translates to: DIPVCPVFLERNKERALSSRWKA*GFLLLS
Trigger: TGAAAGCAGTAGAAAGCCTCAAGCCTTCCATCGAGA...GCTCAGAGCTCTCTCTTTGTTTCTTTCAAGGAAAACAGGACAAACTGGAATGTC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000064595.15
ENSMUST00000090834.13
ENSMUST00000101562.11
CDS-3UTR TCA 90 bp TTGTTTAAGCTGTTTTTAGGCTCAGCTACTCCTGGAAATACAGGATCCTGGGTACCATGTACTTGGCTGTaGTGTAGTCCTTCCTTGCAA +
Preference number: 4 (lower is better)
Translates to: LFKLFLGSATPGNTGSWVPCTWL*CSPSLQ
Trigger: TTGCAAGGAAGGACTACATCACAGCCAAGTACATGG...TACCCAGGATCCTGTATTTCCAGGAGTAGCTGAGCCTAAAAACAGCTTAAACAA
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000050990.10
ENSMUST00000064595.15
ENSMUST00000090834.13
ENSMUST00000101562.11
CDS-3UTR TCA 90 bp CCAAATTTGTTTAAGCTGTTTTTAGGCTCAGCTACTCCTGGAAATACAGGATCCCAACGGGGTCTCTCCTaGCTCATTGGCTATCTCAAT +
Preference number: 4 (lower is better)
Translates to: PNLFKLFLGSATPGNTGSQRGLS*LIGYLN
Trigger: ATTGAGATAGCCAATGAGTCAGGAGAGACCCCGTTG...GGATCCTGTATTTCCAGGAGTAGCTGAGCCTAAAAACAGCTTAAACAAATTTGG
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000050990.10
ENSMUST00000064595.15
ENSMUST00000090834.13
ENSMUST00000101562.11
CDS-3UTR TCA 90 bp CCAAATTTGTTTAAGCTGTTTTTAGGCTCAGCTACTCCTGGAAATACAGGATCCTCTGCTTGTCCTTGGTaGGGTTTGCAGTATCTCTGG +
Preference number: 4 (lower is better)
Translates to: PNLFKLFLGSATPGNTGSSACPW*GLQYLW
Trigger: CCAGAGATACTGCAAACCTCACCAAGGACAAGCAGA...GGATCCTGTATTTCCAGGAGTAGCTGAGCCTAAAAACAGCTTAAACAAATTTGG
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000050990.10
ENSMUST00000064595.15
ENSMUST00000090834.13
ENSMUST00000101562.11
CDS-3UTR TCA 90 bp GACATTCCAGTTTGTCCTGTTTTCCTTGAAAGAAACAAAGAGAGAGCTCTGAGCACTTTGGCGAAGTTGTaGGTCCTCTTTCTGTTCCAC +
Preference number: 4 (lower is better)
Translates to: DIPVCPVFLERNKERALSTLAKL*VLFLFH
Trigger: GTGGAACAGAAAGAGGACTCACAACTTCGCCAAAGT...GCTCAGAGCTCTCTCTTTGTTTCTTTCAAGGAAAACAGGACAAACTGGAATGTC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000090834.13
CDS-3UTR GCA 90 bp ATGTCTTTAAAGGTGAATGGATGGCATTGGTGGACAAGGTCCAGGGTAGGGCGACCCAGAGATATTGATTaGCTTCACAGATTTCTTCAT +
Preference number: 4 (lower is better)
Translates to: MSLKVNGWHWWTRSRVGRPRDID*LHRFLH
Trigger: ATGAAGAAATCTGTGAAGGCAATCAATATCTCTGGG...TCGCCCTACCCTGGACCTTGTCCACCAATGCCATCCATTCACCTTTAAAGACAT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000064595.15
ENSMUST00000090834.13
ENSMUST00000101562.11
CDS-3UTR GCA 90 bp CTCAGCTACTCCTGGAAATACAGGATCCTGGGTATACAGTTAAATAGCTTCTCAAGGTACTCACACATCTaGAGCTGGAAGAACCGTCTT +
Preference number: 4 (lower is better)
Translates to: LSYSWKYRILGIQLNSFSRYSHI*SWKNRL
Trigger: AAGACGGTTCTTCCAGCTGCAGATGTGTGAGTACCT...TGAGAAGCTATTTAACTGTATACCCAGGATCCTGTATTTCCAGGAGTAGCTGAG
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000050990.10
ENSMUST00000064595.15
ENSMUST00000090834.13
ENSMUST00000101562.11
CDS-3UTR GCA 90 bp ATGTCTTTAAAGGTGAATGGATGGCATTGGTGGACAAGGTCCAGGGTAGGGCGATCTTTCTGTTCCACCTaGAATGCTGACTTCAAAATA +
Preference number: 4 (lower is better)
Translates to: MSLKVNGWHWWTRSRVGRSFCST*NADFKI
Trigger: TATTTTGAAGTCAGCATTGCAGGTGGAACAGAAAGA...TCGCCCTACCCTGGACCTTGTCCACCAATGCCATCCATTCACCTTTAAAGACAT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000064595.15
ENSMUST00000090834.13
ENSMUST00000101562.11
CDS-3UTR GCA 90 bp GTTTTTAGGCTCAGCTACTCCTGGAAATACAGGATCCTGGGTATACAGTTAAATGAACACTTCCTCTTCTaGCACACTTTCCGGATCCCA +
Preference number: 4 (lower is better)
Translates to: VFRLSYSWKYRILGIQLNEHFLF*HTFRIP
Trigger: TGGGATCCGGAAAGTGTGGCAGAAGAGGAAGTGTTC...ATTTAACTGTATACCCAGGATCCTGTATTTCCAGGAGTAGCTGAGCCTAAAAAC
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000050990.10
ENSMUST00000064595.15
ENSMUST00000090834.13
ENSMUST00000101562.11
CDS-3UTR GCA 90 bp TTGTTTAAGCTGTTTTTAGGCTCAGCTACTCCTGGAAATACAGGATCCTGGGTAGATGTAGTCCTTCCTTaGAATCATGTCACTGCCTGG +
Preference number: 4 (lower is better)
Translates to: LFKLFLGSATPGNTGSWVDVVLP*NHVTAW
Trigger: CCAGGCAGTGACATGATTGCAAGGAAGGACTACATC...TACCCAGGATCCTGTATTTCCAGGAGTAGCTGAGCCTAAAAACAGCTTAAACAA
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000050990.10
ENSMUST00000064595.15
ENSMUST00000090834.13
ENSMUST00000101562.11
CDS-3UTR GCA 90 bp CCAAATTTGTTTAAGCTGTTTTTAGGCTCAGCTACTCCTGGAAATACAGGATCCTCCTCACAGTGTTCGTaGTTGAGCCGCTTAGCAATG +
Preference number: 4 (lower is better)
Translates to: PNLFKLFLGSATPGNTGSSSQCS*LSRLAM
Trigger: CATTGCTAAGCGGCTCAAGCACGAACACTGTGAGGA...GGATCCTGTATTTCCAGGAGTAGCTGAGCCTAAAAACAGCTTAAACAAATTTGG
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000050990.10
ENSMUST00000064595.15
ENSMUST00000090834.13
ENSMUST00000101562.11
CDS-3UTR CCA 90 bp GTTTTTAGGCTCAGCTACTCCTGGAAATACAGGATCCTGGGTATACAGTTAAATAACTTCTCCAGAGCCTaGGTGTACTGTTCCTCGTTC +
Preference number: 4 (lower is better)
Translates to: VFRLSYSWKYRILGIQLNNFSRA*VYCSSF
Trigger: GAACGAGGAACAGTACACCCAGGCTCTGGAGAAGTT...ATTTAACTGTATACCCAGGATCCTGTATTTCCAGGAGTAGCTGAGCCTAAAAAC
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000050990.10
ENSMUST00000064595.15
ENSMUST00000090834.13
ENSMUST00000101562.11
CDS-3UTR CCA 90 bp GTTTTTAGGCTCAGCTACTCCTGGAAATACAGGATCCTGGGTATACAGTTAAATGTACGAATCATCCCGTaGAGCTTGGCATGCTCCTTT +
Preference number: 4 (lower is better)
Translates to: VFRLSYSWKYRILGIQLNVRIIP*SLACSF
Trigger: AAAGGAGCATGCCAAGCTCCACGGGATGATTCGTAC...ATTTAACTGTATACCCAGGATCCTGTATTTCCAGGAGTAGCTGAGCCTAAAAAC
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000050990.10
ENSMUST00000064595.15
ENSMUST00000090834.13
ENSMUST00000101562.11
CDS-3UTR CCA 90 bp TTGTTTAAGCTGTTTTTAGGCTCAGCTACTCCTGGAAATACAGGATCCTGGGTATCACACATCTGCAGCTaGAAGAACCGTCTTTCCTTC +
Preference number: 4 (lower is better)
Translates to: LFKLFLGSATPGNTGSWVSHICS*KNRLSF
Trigger: GAAGGAAAGACGGTTCTTCCAGCTGCAGATGTGTGA...TACCCAGGATCCTGTATTTCCAGGAGTAGCTGAGCCTAAAAACAGCTTAAACAA
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000050990.10
ENSMUST00000064595.15
ENSMUST00000090834.13
ENSMUST00000101562.11
CDS-3UTR CCA 90 bp ACCAATGTCGGAATTGGGCTAAGGAAAACTAAGAATCCCCCAAATTTGTTTAAGGGATTGGTCTTCACCTaGCAGGTTAGCAGGTTGAGC +
Preference number: 4 (lower is better)
Translates to: TNVGIGLRKTKNPPNLFKGLVFT*QVSRLS
Trigger: GCTCAACCTGCTAACCTGCCAGGTGAAGACCAATCC...CTTAAACAAATTTGGGGGATTCTTAGTTTTCCTTAGCCCAATTCCGACATTGGT
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000050990.10
ENSMUST00000064595.15
ENSMUST00000101562.11
CDS-3UTR CCA 90 bp TTGTTTAAGCTGTTTTTAGGCTCAGCTACTCCTGGAAATACAGGATCCTGGGTACATTCCCGATATTCTTaGCAAGCAGAAGCTCAGACG +
Preference number: 4 (lower is better)
Translates to: LFKLFLGSATPGNTGSWVHSRYS*QAEAQT
Trigger: CGTCTGAGCTTCTGCTTGCCAAGAATATCGGGAATG...TACCCAGGATCCTGTATTTCCAGGAGTAGCTGAGCCTAAAAACAGCTTAAACAA
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000050990.10
ENSMUST00000064595.15
ENSMUST00000101562.11
CDS-3UTR CCA 90 bp CTCAGCTACTCCTGGAAATACAGGATCCTGGGTATACAGTTAAATAGCTTCTCACATTCCCGATATTCTTaGCAAGCAGAAGCTCAGACG +
Preference number: 4 (lower is better)
Translates to: LSYSWKYRILGIQLNSFSHSRYS*QAEAQT
Trigger: CGTCTGAGCTTCTGCTTGCCAAGAATATCGGGAATG...TGAGAAGCTATTTAACTGTATACCCAGGATCCTGTATTTCCAGGAGTAGCTGAG
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000050990.10
ENSMUST00000064595.15
ENSMUST00000101562.11
CDS-3UTR CCA 90 bp CCAAATTTGTTTAAGCTGTTTTTAGGCTCAGCTACTCCTGGAAATACAGGATCCATGCCCATTGGCCAGTaGGATTTTCTCTGTCAGGTC +
Preference number: 4 (lower is better)
Translates to: PNLFKLFLGSATPGNTGSMPIGQ*DFLCQV
Trigger: GACCTGACAGAGAAAATCCCACTGGCCAATGGGCAT...GGATCCTGTATTTCCAGGAGTAGCTGAGCCTAAAAACAGCTTAAACAAATTTGG
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000050990.10
ENSMUST00000064595.15
ENSMUST00000090834.13
ENSMUST00000101562.11
CDS-3UTR CCA 90 bp ACCAATGTCGGAATTGGGCTAAGGAAAACTAAGAATCCCCCAAATTTGTTTAAGGATCTGACTGCAAGATaGAGGGCTGTCTCATCTGGC +
Preference number: 4 (lower is better)
Translates to: TNVGIGLRKTKNPPNLFKDLTAR*RAVSSG
Trigger: GCCAGATGAGACAGCCCTCCATCTTGCAGTCAGATC...CTTAAACAAATTTGGGGGATTCTTAGTTTTCCTTAGCCCAATTCCGACATTGGT
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000050990.10
ENSMUST00000064595.15
ENSMUST00000090834.13
ENSMUST00000101562.11
CDS-3UTR CCA 90 bp ACCAATGTCGGAATTGGGCTAAGGAAAACTAAGAATCCCCCAAATTTGTTTAAGGTGCTTTCACTCGCTTaGGCTTTGACTTGGTCGCCT +
Preference number: 4 (lower is better)
Translates to: TNVGIGLRKTKNPPNLFKVLSLA*ALTWSP
Trigger: AGGCGACCAAGTCAAAGCCCAAGCGAGTGAAAGCAC...CTTAAACAAATTTGGGGGATTCTTAGTTTTCCTTAGCCCAATTCCGACATTGGT
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000050990.10
ENSMUST00000064595.15
ENSMUST00000090834.13
ENSMUST00000101562.11
CDS-3UTR TCA 90 bp TTGTTTAAGCTGTTTTTAGGCTCAGCTACTCCTGGAAATACAGGATCCTGGGTACCAGCCCAGAGATATTaGTTGCCTTCACAGATTTCT +
Preference number: 4 (lower is better)
Translates to: LFKLFLGSATPGNTGSWVPAQRY*LPSQIS
Trigger: AGAAATCTGTGAAGGCAATCAATATCTCTGGGCTGG...TACCCAGGATCCTGTATTTCCAGGAGTAGCTGAGCCTAAAAACAGCTTAAACAA
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000050990.10
ENSMUST00000064595.15
ENSMUST00000090834.13
ENSMUST00000101562.11
CDS-3UTR TCA 90 bp AAGCTGTTTTTAGGCTCAGCTACTCCTGGAAATACAGGATCCTGGGTATACAGTAAATTGCACTGGGCGTaGAAGTACTTGATCAGATTC +
Preference number: 4 (lower is better)
Translates to: KLFLGSATPGNTGSWVYSKLHWA*KYLIRF
Trigger: GAATCTGATCAAGTACTTTCACGCCCAGTGCAATTT...ACTGTATACCCAGGATCCTGTATTTCCAGGAGTAGCTGAGCCTAAAAACAGCTT
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000050990.10
ENSMUST00000064595.15
ENSMUST00000090834.13
ENSMUST00000101562.11
CDS-3UTR TCA 90 bp CCATATCCTAACCACGGCTCTTACCTGTGCTTAATGTTATTAAGTAGAGGTATGTCTCGATGGAAGGCTTaGGGCTTTCTACTGCTTTCA +
Preference number: 4 (lower is better)
Translates to: PYPNHGSYLCLMLLSRGMSRWKA*GFLLLS
Trigger: TGAAAGCAGTAGAAAGCCTCAAGCCTTCCATCGAGA...CATACCTCTACTTAATAACATTAAGCACAGGTAAGAGCCGTGGTTAGGATATGG
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000064595.15
ENSMUST00000090834.13
ENSMUST00000101562.11
CDS-3UTR TCA 90 bp GTTTTTAGGCTCAGCTACTCCTGGAAATACAGGATCCTGGGTATACAGTTAAATACTTTGGCGAAGTTGTaGGTCCTCTTTCTGTTCCAC +
Preference number: 4 (lower is better)
Translates to: VFRLSYSWKYRILGIQLNTLAKL*VLFLFH
Trigger: GTGGAACAGAAAGAGGACTCACAACTTCGCCAAAGT...ATTTAACTGTATACCCAGGATCCTGTATTTCCAGGAGTAGCTGAGCCTAAAAAC
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000050990.10
ENSMUST00000090834.13
CDS-3UTR GCA 90 bp ACCAATGTCGGAATTGGGCTAAGGAAAACTAAGAATCCCCCAAATTTGTTTAAGCTCGTTCTCCACGTGTaGCAGCCCAGAGATATTGAT +
Preference number: 4 (lower is better)
Translates to: TNVGIGLRKTKNPPNLFKLVLHV*QPRDID
Trigger: ATCAATATCTCTGGGCTGGCACACGTGGAGAACGAG...CTTAAACAAATTTGGGGGATTCTTAGTTTTCCTTAGCCCAATTCCGACATTGGT
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000050990.10
ENSMUST00000064595.15
ENSMUST00000090834.13
ENSMUST00000101562.11
CDS-3UTR GCA 90 bp CTCAGCTACTCCTGGAAATACAGGATCCTGGGTATACAGTTAAATAGCTTCTCACAGGTTTTTGAAGAGTaGCGTCAACTCCTTGGTGAA +
Preference number: 4 (lower is better)
Translates to: LSYSWKYRILGIQLNSFSQVFEE*RQLLGE
Trigger: TTCACCAAGGAGTTGACGGCACTCTTCAAAAACCTG...TGAGAAGCTATTTAACTGTATACCCAGGATCCTGTATTTCCAGGAGTAGCTGAG
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000050990.10
ENSMUST00000064595.15
ENSMUST00000090834.13
ENSMUST00000101562.11
CDS-3UTR GCA 90 bp GACATTCCAGTTTGTCCTGTTTTCCTTGAAAGAAACAAAGAGAGAGCTCTGAGCCAGGTTTTTGAAGAGTaGCGTCAACTCCTTGGTGAA +
Preference number: 4 (lower is better)
Translates to: DIPVCPVFLERNKERALSQVFEE*RQLLGE
Trigger: TTCACCAAGGAGTTGACGGCACTCTTCAAAAACCTG...GCTCAGAGCTCTCTCTTTGTTTCTTTCAAGGAAAACAGGACAAACTGGAATGTC
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000064595.15
ENSMUST00000090834.13
ENSMUST00000101562.11
CDS-3UTR GCA 90 bp TGCTTTCCTTTCAGTTGCTTTCTCTTCTCAGTTTGCAAAGAGCGAGTAACAGGACAGGTTTTTGAAGAGTaGCGTCAACTCCTTGGTGAA +
Preference number: 4 (lower is better)
Translates to: CFPFSCFLFSVCKERVTGQVFEE*RQLLGE
Trigger: TTCACCAAGGAGTTGACGGCACTCTTCAAAAACCTG...TCCTGTTACTCGCTCTTTGCAAACTGAGAAGAGAAAGCAACTGAAAGGAAAGCA
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000064595.15
ENSMUST00000090834.13
ENSMUST00000101562.11
CDS-3UTR GCA 90 bp CCAAATTTGTTTAAGCTGTTTTTAGGCTCAGCTACTCCTGGAAATACAGGATCCAGGTACTCACACATCTaGAGCTGGAAGAACCGTCTT +
Preference number: 4 (lower is better)
Translates to: PNLFKLFLGSATPGNTGSRYSHI*SWKNRL
Trigger: AAGACGGTTCTTCCAGCTGCAGATGTGTGAGTACCT...GGATCCTGTATTTCCAGGAGTAGCTGAGCCTAAAAACAGCTTAAACAAATTTGG
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000050990.10
ENSMUST00000064595.15
ENSMUST00000090834.13
ENSMUST00000101562.11
CDS-3UTR GCA 90 bp TTTAGGAGTGATGCGATGGGCTTACATAGTGTAACTGGGATGTTTGGGGGCACTTCTTTCTGTTCCACCTaGAATGCTGACTTCAAAATA +
Preference number: 4 (lower is better)
Translates to: FRSDAMGLHSVTGMFGGTSFCST*NADFKI
Trigger: TATTTTGAAGTCAGCATTGCAGGTGGAACAGAAAGA...AGTGCCCCCAAACATCCCAGTTACACTATGTAAGCCCATCGCATCACTCCTAAA
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000064595.15
ENSMUST00000090834.13
ENSMUST00000101562.11
CDS-3UTR GCA 90 bp ACCAATGTCGGAATTGGGCTAAGGAAAACTAAGAATCCCCCAAATTTGTTTAAGGAACACTTCCTCTTCTaGCACACTTTCCGGATCCCA +
Preference number: 4 (lower is better)
Translates to: TNVGIGLRKTKNPPNLFKEHFLF*HTFRIP
Trigger: TGGGATCCGGAAAGTGTGGCAGAAGAGGAAGTGTTC...CTTAAACAAATTTGGGGGATTCTTAGTTTTCCTTAGCCCAATTCCGACATTGGT
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000050990.10
ENSMUST00000064595.15
ENSMUST00000090834.13
ENSMUST00000101562.11
CDS-3UTR GCA 90 bp AAGCTGTTTTTAGGCTCAGCTACTCCTGGAAATACAGGATCCTGGGTATACAGTTCTTCCTTGCTGTTCTaGAGTACAGACATCCATATC +
Preference number: 4 (lower is better)
Translates to: KLFLGSATPGNTGSWVYSSSLLF*STDIHI
Trigger: GATATGGATGTCTGTACTGCAGAACAGCAAGGAAGA...ACTGTATACCCAGGATCCTGTATTTCCAGGAGTAGCTGAGCCTAAAAACAGCTT
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000050990.10
ENSMUST00000064595.15
ENSMUST00000101562.11
CDS-3UTR GCA 90 bp GTTTTTAGGCTCAGCTACTCCTGGAAATACAGGATCCTGGGTATACAGTTAAATGATGTAGTCCTTCCTTaGAATCATGTCACTGCCTGG +
Preference number: 4 (lower is better)
Translates to: VFRLSYSWKYRILGIQLNDVVLP*NHVTAW
Trigger: CCAGGCAGTGACATGATTGCAAGGAAGGACTACATC...ATTTAACTGTATACCCAGGATCCTGTATTTCCAGGAGTAGCTGAGCCTAAAAAC
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000050990.10
ENSMUST00000064595.15
ENSMUST00000090834.13
ENSMUST00000101562.11
CDS-3UTR GCA 90 bp CCAAATTTGTTTAAGCTGTTTTTAGGCTCAGCTACTCCTGGAAATACAGGATCCGTCCTTGGTGAGGTTTaGAGTATCTCTGGCCAAAGA +
Preference number: 4 (lower is better)
Translates to: PNLFKLFLGSATPGNTGSVLGEV*SISGQR
Trigger: TCTTTGGCCAGAGATACTGCAAACCTCACCAAGGAC...GGATCCTGTATTTCCAGGAGTAGCTGAGCCTAAAAACAGCTTAAACAAATTTGG
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000050990.10
ENSMUST00000064595.15
ENSMUST00000090834.13
ENSMUST00000101562.11
CDS-3UTR CCA 90 bp CCAAATTTGTTTAAGCTGTTTTTAGGCTCAGCTACTCCTGGAAATACAGGATCCTCACACATCTGCAGCTaGAAGAACCGTCTTTCCTTC +
Preference number: 4 (lower is better)
Translates to: PNLFKLFLGSATPGNTGSSHICS*KNRLSF
Trigger: GAAGGAAAGACGGTTCTTCCAGCTGCAGATGTGTGA...GGATCCTGTATTTCCAGGAGTAGCTGAGCCTAAAAACAGCTTAAACAAATTTGG
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000050990.10
ENSMUST00000064595.15
ENSMUST00000090834.13
ENSMUST00000101562.11
CDS-3UTR CCA 90 bp CCAAATTTGTTTAAGCTGTTTTTAGGCTCAGCTACTCCTGGAAATACAGGATCCCATTCCCGATATTCTTaGCAAGCAGAAGCTCAGACG +
Preference number: 4 (lower is better)
Translates to: PNLFKLFLGSATPGNTGSHSRYS*QAEAQT
Trigger: CGTCTGAGCTTCTGCTTGCCAAGAATATCGGGAATG...GGATCCTGTATTTCCAGGAGTAGCTGAGCCTAAAAACAGCTTAAACAAATTTGG
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000050990.10
ENSMUST00000064595.15
ENSMUST00000101562.11
CDS-3UTR CCA 90 bp GACATTCCAGTTTGTCCTGTTTTCCTTGAAAGAAACAAAGAGAGAGCTCTGAGCTCTCTCCTGACTCATTaGCTATCTCAATGGAGGCTT +
Preference number: 4 (lower is better)
Translates to: DIPVCPVFLERNKERALSSLLTH*LSQWRL
Trigger: AAGCCTCCATTGAGATAGCCAATGAGTCAGGAGAGA...GCTCAGAGCTCTCTCTTTGTTTCTTTCAAGGAAAACAGGACAAACTGGAATGTC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000064595.15
ENSMUST00000090834.13
ENSMUST00000101562.11
CDS-3UTR TCA 90 bp CCAAATTTGTTTAAGCTGTTTTTAGGCTCAGCTACTCCTGGAAATACAGGATCCCCAGCCCAGAGATATTaGTTGCCTTCACAGATTTCT +
Preference number: 4 (lower is better)
Translates to: PNLFKLFLGSATPGNTGSPAQRY*LPSQIS
Trigger: AGAAATCTGTGAAGGCAATCAATATCTCTGGGCTGG...GGATCCTGTATTTCCAGGAGTAGCTGAGCCTAAAAACAGCTTAAACAAATTTGG
42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000050990.10
ENSMUST00000064595.15
ENSMUST00000090834.13
ENSMUST00000101562.11
CDS-3UTR TCA 90 bp AAGCTGTTTTTAGGCTCAGCTACTCCTGGAAATACAGGATCCTGGGTATACAGTTACTTGATCAGATTCTaGAGCAAATCCACTCCCTTT +
Preference number: 4 (lower is better)
Translates to: KLFLGSATPGNTGSWVYSYLIRF*SKSTPF
Trigger: AAAGGGAGTGGATTTGCTTCAGAATCTGATCAAGTA...ACTGTATACCCAGGATCCTGTATTTCCAGGAGTAGCTGAGCCTAAAAACAGCTT
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000050990.10
ENSMUST00000064595.15
ENSMUST00000090834.13
ENSMUST00000101562.11
CDS-3UTR TCA 90 bp TTGTTTAAGCTGTTTTTAGGCTCAGCTACTCCTGGAAATACAGGATCCTGGGTAAAATTGCACTGGGCGTaGAAGTACTTGATCAGATTC +
Preference number: 4 (lower is better)
Translates to: LFKLFLGSATPGNTGSWVKLHWA*KYLIRF
Trigger: GAATCTGATCAAGTACTTTCACGCCCAGTGCAATTT...TACCCAGGATCCTGTATTTCCAGGAGTAGCTGAGCCTAAAAACAGCTTAAACAA
42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000050990.10
ENSMUST00000064595.15
ENSMUST00000090834.13
ENSMUST00000101562.11
CDS-3UTR TCA 90 bp TTGTTTAAGCTGTTTTTAGGCTCAGCTACTCCTGGAAATACAGGATCCTGGGTATTCCACCTGCAATGCTaGCTTCAAAATATCTCGAAG +
Preference number: 4 (lower is better)
Translates to: LFKLFLGSATPGNTGSWVFHLQC*LQNISK
Trigger: CTTCGAGATATTTTGAAGTCAGCATTGCAGGTGGAA...TACCCAGGATCCTGTATTTCCAGGAGTAGCTGAGCCTAAAAACAGCTTAAACAA
42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000050990.10
ENSMUST00000064595.15
ENSMUST00000090834.13
ENSMUST00000101562.11
CDS-3UTR GCA 90 bp CCATATCCTAACCACGGCTCTTACCTGTGCTTAATGTTATTAAGTAGAGGTATGCAGGTTTTTGAAGAGTaGCGTCAACTCCTTGGTGAA +
Preference number: 4 (lower is better)
Translates to: PYPNHGSYLCLMLLSRGMQVFEE*RQLLGE
Trigger: TTCACCAAGGAGTTGACGGCACTCTTCAAAAACCTG...CATACCTCTACTTAATAACATTAAGCACAGGTAAGAGCCGTGGTTAGGATATGG
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000064595.15
ENSMUST00000090834.13
ENSMUST00000101562.11
CDS-3UTR GCA 90 bp CTCAGCTACTCCTGGAAATACAGGATCCTGGGTATACAGTTAAATAGCTTCTCATCTTCCTTGCTGTTCTaGAGTACAGACATCCATATC +
Preference number: 4 (lower is better)
Translates to: LSYSWKYRILGIQLNSFSSSLLF*STDIHI
Trigger: GATATGGATGTCTGTACTGCAGAACAGCAAGGAAGA...TGAGAAGCTATTTAACTGTATACCCAGGATCCTGTATTTCCAGGAGTAGCTGAG
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000050990.10
ENSMUST00000064595.15
ENSMUST00000101562.11
CDS-3UTR CCA 90 bp ACCAATGTCGGAATTGGGCTAAGGAAAACTAAGAATCCCCCAAATTTGTTTAAGTCACACATCTGCAGCTaGAAGAACCGTCTTTCCTTC +
Preference number: 4 (lower is better)
Translates to: TNVGIGLRKTKNPPNLFKSHICS*KNRLSF
Trigger: GAAGGAAAGACGGTTCTTCCAGCTGCAGATGTGTGA...CTTAAACAAATTTGGGGGATTCTTAGTTTTCCTTAGCCCAATTCCGACATTGGT
42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000050990.10
ENSMUST00000064595.15
ENSMUST00000090834.13
ENSMUST00000101562.11
CDS-3UTR CCA 90 bp TTGTTTAAGCTGTTTTTAGGCTCAGCTACTCCTGGAAATACAGGATCCTGGGTATCCTTGGTCAGCTCTTaGACGATGTTATTTTCTCCA +
Preference number: 4 (lower is better)
Translates to: LFKLFLGSATPGNTGSWVSLVSS*TMLFSP
Trigger: TGGAGAAAATAACATCGTCCAAGAGCTGACCAAGGA...TACCCAGGATCCTGTATTTCCAGGAGTAGCTGAGCCTAAAAACAGCTTAAACAA
42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000050990.10
ENSMUST00000064595.15
ENSMUST00000101562.11
CDS-3UTR CCA 90 bp GACATTCCAGTTTGTCCTGTTTTCCTTGAAAGAAACAAAGAGAGAGCTCTGAGCTCCTTGGTCAGCTCTTaGACGATGTTATTTTCTCCA +
Preference number: 4 (lower is better)
Translates to: DIPVCPVFLERNKERALSSLVSS*TMLFSP
Trigger: TGGAGAAAATAACATCGTCCAAGAGCTGACCAAGGA...GCTCAGAGCTCTCTCTTTGTTTCTTTCAAGGAAAACAGGACAAACTGGAATGTC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000064595.15
ENSMUST00000101562.11
CDS-3UTR CCA 90 bp CCAAATTTGTTTAAGCTGTTTTTAGGCTCAGCTACTCCTGGAAATACAGGATCCTCTCTCCTGACTCATTaGCTATCTCAATGGAGGCTT +
Preference number: 4 (lower is better)
Translates to: PNLFKLFLGSATPGNTGSSLLTH*LSQWRL
Trigger: AAGCCTCCATTGAGATAGCCAATGAGTCAGGAGAGA...GGATCCTGTATTTCCAGGAGTAGCTGAGCCTAAAAACAGCTTAAACAAATTTGG
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000050990.10
ENSMUST00000064595.15
ENSMUST00000090834.13
ENSMUST00000101562.11
CDS-3UTR CCA 90 bp GTTTTTAGGCTCAGCTACTCCTGGAAATACAGGATCCTGGGTATACAGTTAAATTCTCTCCTGACTCATTaGCTATCTCAATGGAGGCTT +
Preference number: 4 (lower is better)
Translates to: VFRLSYSWKYRILGIQLNSLLTH*LSQWRL
Trigger: AAGCCTCCATTGAGATAGCCAATGAGTCAGGAGAGA...ATTTAACTGTATACCCAGGATCCTGTATTTCCAGGAGTAGCTGAGCCTAAAAAC
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000050990.10
ENSMUST00000064595.15
ENSMUST00000090834.13
ENSMUST00000101562.11
CDS-3UTR TCA 90 bp GACATTCCAGTTTGTCCTGTTTTCCTTGAAAGAAACAAAGAGAGAGCTCTGAGCTACTTGATCAGATTCTaGAGCAAATCCACTCCCTTT +
Preference number: 4 (lower is better)
Translates to: DIPVCPVFLERNKERALSYLIRF*SKSTPF
Trigger: AAAGGGAGTGGATTTGCTTCAGAATCTGATCAAGTA...GCTCAGAGCTCTCTCTTTGTTTCTTTCAAGGAAAACAGGACAAACTGGAATGTC
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000064595.15
ENSMUST00000090834.13
ENSMUST00000101562.11
CDS-3UTR TCA 90 bp TTGTTTAAGCTGTTTTTAGGCTCAGCTACTCCTGGAAATACAGGATCCTGGGTATACTTGATCAGATTCTaGAGCAAATCCACTCCCTTT +
Preference number: 4 (lower is better)
Translates to: LFKLFLGSATPGNTGSWVYLIRF*SKSTPF
Trigger: AAAGGGAGTGGATTTGCTTCAGAATCTGATCAAGTA...TACCCAGGATCCTGTATTTCCAGGAGTAGCTGAGCCTAAAAACAGCTTAAACAA
41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000050990.10
ENSMUST00000064595.15
ENSMUST00000090834.13
ENSMUST00000101562.11
CDS-3UTR TCA 90 bp GTTTTTAGGCTCAGCTACTCCTGGAAATACAGGATCCTGGGTATACAGTTAAATGGGCGTGAAAGTACTTaGTCAGATTCTGAAGCAAAT +
Preference number: 4 (lower is better)
Translates to: VFRLSYSWKYRILGIQLNGREST*SDSEAN
Trigger: ATTTGCTTCAGAATCTGATCAAGTACTTTCACGCCC...ATTTAACTGTATACCCAGGATCCTGTATTTCCAGGAGTAGCTGAGCCTAAAAAC
41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000050990.10
ENSMUST00000064595.15
ENSMUST00000090834.13
ENSMUST00000101562.11
CDS-3UTR TCA 90 bp CCAAATTTGTTTAAGCTGTTTTTAGGCTCAGCTACTCCTGGAAATACAGGATCCGGGCGTGAAAGTACTTaGTCAGATTCTGAAGCAAAT +
Preference number: 4 (lower is better)
Translates to: PNLFKLFLGSATPGNTGSGREST*SDSEAN
Trigger: ATTTGCTTCAGAATCTGATCAAGTACTTTCACGCCC...GGATCCTGTATTTCCAGGAGTAGCTGAGCCTAAAAACAGCTTAAACAAATTTGG
41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000050990.10
ENSMUST00000064595.15
ENSMUST00000090834.13
ENSMUST00000101562.11
CDS-3UTR TCA 90 bp CCAAATTTGTTTAAGCTGTTTTTAGGCTCAGCTACTCCTGGAAATACAGGATCCAAATTGCACTGGGCGTaGAAGTACTTGATCAGATTC +
Preference number: 4 (lower is better)
Translates to: PNLFKLFLGSATPGNTGSKLHWA*KYLIRF
Trigger: GAATCTGATCAAGTACTTTCACGCCCAGTGCAATTT...GGATCCTGTATTTCCAGGAGTAGCTGAGCCTAAAAACAGCTTAAACAAATTTGG
41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000050990.10
ENSMUST00000064595.15
ENSMUST00000090834.13
ENSMUST00000101562.11
CDS-3UTR CCA 90 bp GTTTTTAGGCTCAGCTACTCCTGGAAATACAGGATCCTGGGTATACAGTTAAATTCCTTGGTCAGCTCTTaGACGATGTTATTTTCTCCA +
Preference number: 4 (lower is better)
Translates to: VFRLSYSWKYRILGIQLNSLVSS*TMLFSP
Trigger: TGGAGAAAATAACATCGTCCAAGAGCTGACCAAGGA...ATTTAACTGTATACCCAGGATCCTGTATTTCCAGGAGTAGCTGAGCCTAAAAAC
41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000050990.10
ENSMUST00000064595.15
ENSMUST00000101562.11
CDS-3UTR GCA 90 bp CCAAATTTGTTTAAGCTGTTTTTAGGCTCAGCTACTCCTGGAAATACAGGATCCCCCAGAGATATTGATTaGCTTCACAGATTTCTTCAT +
Preference number: 4 (lower is better)
Translates to: PNLFKLFLGSATPGNTGSPRDID*LHRFLH
Trigger: ATGAAGAAATCTGTGAAGGCAATCAATATCTCTGGG...GGATCCTGTATTTCCAGGAGTAGCTGAGCCTAAAAACAGCTTAAACAAATTTGG
39% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 4 transcripts:
ENSMUST00000050990.10
ENSMUST00000064595.15
ENSMUST00000090834.13
ENSMUST00000101562.11
CDS-3UTR GCA 90 bp CCATATCCTAACCACGGCTCTTACCTGTGCTTAATGTTATTAAGTAGAGGTATGCCCAGAGATATTGATTaGCTTCACAGATTTCTTCAT +
Preference number: 4 (lower is better)
Translates to: PYPNHGSYLCLMLLSRGMPRDID*LHRFLH
Trigger: ATGAAGAAATCTGTGAAGGCAATCAATATCTCTGGG...CATACCTCTACTTAATAACATTAAGCACAGGTAAGAGCCGTGGTTAGGATATGG
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000064595.15
ENSMUST00000090834.13
ENSMUST00000101562.11
CDS-3UTR GCA 90 bp GTTTTTAGGCTCAGCTACTCCTGGAAATACAGGATCCTGGGTATACAGTTAAATTCTTTCTGTTCCACCTaGAATGCTGACTTCAAAATA +
Preference number: 4 (lower is better)
Translates to: VFRLSYSWKYRILGIQLNSFCST*NADFKI
Trigger: TATTTTGAAGTCAGCATTGCAGGTGGAACAGAAAGA...ATTTAACTGTATACCCAGGATCCTGTATTTCCAGGAGTAGCTGAGCCTAAAAAC
39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000050990.10
ENSMUST00000064595.15
ENSMUST00000090834.13
ENSMUST00000101562.11
CDS-3UTR GCA 90 bp CCATATCCTAACCACGGCTCTTACCTGTGCTTAATGTTATTAAGTAGAGGTATGTCTTTCTGTTCCACCTaGAATGCTGACTTCAAAATA +
Preference number: 4 (lower is better)
Translates to: PYPNHGSYLCLMLLSRGMSFCST*NADFKI
Trigger: TATTTTGAAGTCAGCATTGCAGGTGGAACAGAAAGA...CATACCTCTACTTAATAACATTAAGCACAGGTAAGAGCCGTGGTTAGGATATGG
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000064595.15
ENSMUST00000090834.13
ENSMUST00000101562.11
3UTR CAA 72 bp AATGAATTGAATATCATACATCTCAAAATAGCATTCTaGGCTGCAGGTCATTCTCCACCTCAGCAGATCACA +
Preference number: 4 (lower is better)
Translates to: NELNIIHLKIAF*AAGHSPPQQIT
Trigger: TGTGATCTGCTGAGGTGGAGAATGACCTGCAGCCAAGAATGCTATTTTGAGATGTATGATATTCAATTCATT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000064595.15
ENSMUST00000090834.13
ENSMUST00000101562.11
CDS CCA 90 bp CTTTGCCAACATTCCGAGGTGGGAGCGGGGGTGCGCTGGTGGTGCTaGGGGGTATTGACTGGGAGGAGGGCGGGCTGCCACTCAGGATGG +
Preference number: 5 (lower is better)
Translates to: LCQHSEVGAGVRWWC*GVLTGRRAGCHSGW
Trigger: CCATCCTGAGTGGCAGCCCGCCCTCCTCCCAGTCAATACCCCCCAGCACCACCAGCGCACCCCCGCTCCCACCTCGGAATGTTGGCAAAG
67% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 4 transcripts:
ENSMUST00000050990.10
ENSMUST00000064595.15
ENSMUST00000090834.13
ENSMUST00000101562.11
CDS GCA 90 bp GGGGGCAGCGGTGGGTGGACAGCTGGCAGATCTGACGAAGATCGCTaGCTGCTGATACCGTCCACACCTACAGAGTTTGTCTTCCACAGG +
Preference number: 5 (lower is better)
Translates to: GGSGGWTAGRSDEDR*LLIPSTPTEFVFHR
Trigger: CCTGTGGAAGACAAACTCTGTAGGTGTGGACGGTATCAGCAGGCAGCGATCTTCGTCAGATCTGCCAGCTGTCCACCCACCGCTGCCCCC
60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000064595.15
CDS CCA 90 bp GTCAGGGGATTGGTAGATGTCACTCGAAGAGGGGGCAGCGGTGGGTaGACAGCTGGCAGATCTGACGAAGATCGCTGCCTGCTGATACCG +
Preference number: 5 (lower is better)
Translates to: VRGLVDVTRRGGSGG*TAGRSDEDRCLLIP
Trigger: CGGTATCAGCAGGCAGCGATCTTCGTCAGATCTGCCAGCTGTCCACCCACCGCTGCCCCCTCTTCGAGTGACATCTACCAATCCCCTGAC
60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000064595.15
CDS CCA 90 bp CGAAGCTTCAGGTCCTCTCGGCTGTCCTTTGTTGGTCAGCGGGGTTaGCTTGTCAGTCCCGGAAGCTGGTTTCTTCTGAGGCAGGCGGCT +
Preference number: 5 (lower is better)
Translates to: RSFRSSRLSFVGQRG*LVSPGSWFLLRQAA
Trigger: AGCCGCCTGCCTCAGAAGAAACCAGCTTCCGGGACTGACAAGCCAACCCCGCTGACCAACAAAGGACAGCCGAGAGGACCTGAAGCTTCG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000050990.10
ENSMUST00000064595.15
ENSMUST00000090834.13
ENSMUST00000101562.11
CDS CCA 90 bp GGGGGCTTGCTCTGTGAGGTCCCAGGTTGGGAGGACTTGCTCGGCTaGTTCATGGCTTCTAGAGTTCCTGATGTCTTAGCCACAGGAGGG +
Preference number: 5 (lower is better)
Translates to: GGLLCEVPGWEDLLG*FMASRVPDVLATGG
Trigger: CCCTCCTGTGGCTAAGACATCAGGAACTCTAGAAGCCATGAACCAGCCGAGCAAGTCCTCCCAACCTGGGACCTCACAGAGCAAGCCCCC
59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000050990.10
ENSMUST00000064595.15
ENSMUST00000090834.13
ENSMUST00000101562.11
CDS-3UTR CAA 90 bp AGGTATGACTGTTCACAACATGGGTCCTACAAACATGCGGGAGATCATGGCAGCGGCAGGGGCGGGGGCTaGCTCTGTGAGGTCCCAGGT +
Preference number: 5 (lower is better)
Translates to: RYDCSQHGSYKHAGDHGSGRGGG*LCEVPG
Trigger: ACCTGGGACCTCACAGAGCAAGCCCCCGCCCCTGCC...GCTGCCATGATCTCCCGCATGTTTGTAGGACCCATGTTGTGAACAGTCATACCT
59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000064595.15
ENSMUST00000090834.13
ENSMUST00000101562.11
CDS-3UTR CAA 90 bp GTTTGGGGGCACTGGGCTCCCCAAGGTCTACAGATTTCTGATATGTTCTTGACTGGCAGGGGCGGGGGCTaGCTCTGTGAGGTCCCAGGT +
Preference number: 5 (lower is better)
Translates to: VWGHWAPQGLQISDMFLTGRGGG*LCEVPG
Trigger: ACCTGGGACCTCACAGAGCAAGCCCCCGCCCCTGCC...AGTCAAGAACATATCAGAAATCTGTAGACCTTGGGGAGCCCAGTGCCCCCAAAC
59% GC, longest homopolymer 5 nt, total homopolymer stretches 18 nt.
Matches the following 3 transcripts:
ENSMUST00000064595.15
ENSMUST00000090834.13
ENSMUST00000101562.11
CDS-3UTR CAA 90 bp GCTTACTGTGGCCCGCACCACATATTCTACCTGTGTGACGGGATGCTGAACGAGTGCAGGGCCATGGCGTaGGACAGAGGACCCGAAGCT +
Preference number: 5 (lower is better)
Translates to: AYCGPHHIFYLCDGMLNECRAMA*DRGPEA
Trigger: AGCTTCGGGTCCTCTGTCCAACGCCATGGCCCTGCA...CTCGTTCAGCATCCCGTCACACAGGTAGAATATGTGGTGCGGGCCACAGTAAGC
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000064595.15
ENSMUST00000090834.13
ENSMUST00000101562.11
CDS CCA 90 bp TGGACAGAGGACCCGAAGCTTCAGGTCCTCTCGGCTGTCCTTTGTTaGTCAGCGGGGTTGGCTTGTCAGTCCCGGAAGCTGGTTTCTTCT +
Preference number: 5 (lower is better)
Translates to: WTEDPKLQVLSAVLC*SAGLACQSRKLVSS
Trigger: AGAAGAAACCAGCTTCCGGGACTGACAAGCCAACCCCGCTGACCAACAAAGGACAGCCGAGAGGACCTGAAGCTTCGGGTCCTCTGTCCA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000050990.10
ENSMUST00000064595.15
ENSMUST00000090834.13
ENSMUST00000101562.11
CDS-3UTR CAA 90 bp GCTTACTGTGGCCCGCACCACATATTCTACCTGTGTGACGGGATGCTGAACGAGGTTAGCAGGTTGAGCTaGGCAGGTGGCCGGTTGGCA +
Preference number: 5 (lower is better)
Translates to: AYCGPHHIFYLCDGMLNEVSRLS*AGGRLA
Trigger: TGCCAACCGGCCACCTGCCAAGCTCAACCTGCTAAC...CTCGTTCAGCATCCCGTCACACAGGTAGAATATGTGGTGCGGGCCACAGTAAGC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000064595.15
ENSMUST00000101562.11
CDS GCA 90 bp TTGACGGCCTCGCAAAGGCTGTGGAGCTTCGCCGCGGTGTCGGCATaGTTTTTCCGTGCATATCTCCTCTCCATGTACTTGGCTGTGATG +
Preference number: 5 (lower is better)
Translates to: LTASQRLWSFAAVSA*FFRAYLLSMYLAVM
Trigger: CATCACAGCCAAGTACATGGAGAGGAGATATGCACGGAAAAAGCATGCCGACACCGCGGCGAAGCTCCACAGCCTTTGCGAGGCCGTCAA
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000050990.10
ENSMUST00000064595.15
ENSMUST00000090834.13
ENSMUST00000101562.11
CDS-3UTR CAA 90 bp TGTGGCCCGCACCACATATTCTACCTGTGTGACGGGATGCTGAACGAGGCAAATGTTAGCAGGTTGAGCTaGGCAGGTGGCCGGTTGGCA +
Preference number: 5 (lower is better)
Translates to: CGPHHIFYLCDGMLNEANVSRLS*AGGRLA
Trigger: TGCCAACCGGCCACCTGCCAAGCTCAACCTGCTAAC...ATTTGCCTCGTTCAGCATCCCGTCACACAGGTAGAATATGTGGTGCGGGCCACA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000064595.15
ENSMUST00000101562.11
CDS-3UTR CAA 90 bp TTACATAGTGTAACTGGGATGTTTGGGGGCACTGGGCTCCCCAAGGTCTACAGATGGCAGGTTAGCAGGTaGAGCTTGGCAGGTGGCCGG +
Preference number: 5 (lower is better)
Translates to: LHSVTGMFGGTGLPKVYRWQVSR*SLAGGR
Trigger: CCGGCCACCTGCCAAGCTCAACCTGCTAACCTGCCA...TCTGTAGACCTTGGGGAGCCCAGTGCCCCCAAACATCCCAGTTACACTATGTAA
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000064595.15
ENSMUST00000101562.11
CDS-3UTR CAA 90 bp CCGCACCACATATTCTACCTGTGTGACGGGATGCTGAACGAGGCAAATCCTCAATGGCAGGTTAGCAGGTaGAGCTTGGCAGGTGGCCGG +
Preference number: 5 (lower is better)
Translates to: PHHIFYLCDGMLNEANPQWQVSR*SLAGGR
Trigger: CCGGCCACCTGCCAAGCTCAACCTGCTAACCTGCCA...TTGAGGATTTGCCTCGTTCAGCATCCCGTCACACAGGTAGAATATGTGGTGCGG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000064595.15
ENSMUST00000101562.11
CDS-3UTR CAA 90 bp TGTGGCCCGCACCACATATTCTACCTGTGTGACGGGATGCTGAACGAGGCAAATGTCAGGATGCCCAGGTaGGTAGAGAGCCACGTCGGA +
Preference number: 5 (lower is better)
Translates to: CGPHHIFYLCDGMLNEANVRMPR*VESHVG
Trigger: TCCGACGTGGCTCTCTACCAACCTGGGCATCCTGAC...ATTTGCCTCGTTCAGCATCCCGTCACACAGGTAGAATATGTGGTGCGGGCCACA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000064595.15
ENSMUST00000101562.11
CDS TCA 90 bp CACCATCAGCATAAGCTTGGAGTAACCCAAAAATGTCTCTGGTCTTaGCGGCCTCGCAAAGGCTGTGGAGCTTCGCCGCGGTGTCGGCAT +
Preference number: 5 (lower is better)
Translates to: HHQHKLGVTQKCLWS*RPRKGCGASPRCRH
Trigger: ATGCCGACACCGCGGCGAAGCTCCACAGCCTTTGCGAGGCCGTCAAGACCAGAGACATTTTTGGGTTACTCCAAGCTTATGCTGATGGTG
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000050990.10
ENSMUST00000064595.15
ENSMUST00000090834.13
ENSMUST00000101562.11
CDS TCA 90 bp ACTCATTGGCTATCTCAATGGAGGCTTTTCCCCGCAGGAGGAGCTTaGGGCACTCAGCATTGTCTGTCAGGCAGCAGTAGTGCAGGGCTG +
Preference number: 5 (lower is better)
Translates to: THWLSQWRLFPAGGA*GTQHCLSGSSSAGL
Trigger: CAGCCCTGCACTACTGCTGCCTGACAGACAATGCTGAGTGCCTCAAGCTCCTCCTGCGGGGAAAAGCCTCCATTGAGATAGCCAATGAGT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000050990.10
ENSMUST00000064595.15
ENSMUST00000090834.13
ENSMUST00000101562.11
CDS CCA 90 bp GGATCATCTCTGCACACACAGTTGCCACCGAACTTCTCCAGAGCCTaGGTGTACTGTTCCTCGTTCTCCACGTGTGCCAGCCCAGAGATA +
Preference number: 5 (lower is better)
Translates to: GSSLHTQLPPNFSRA*VYCSSFSTCASPEI
Trigger: TATCTCTGGGCTGGCACACGTGGAGAACGAGGAACAGTACACCCAGGCTCTGGAGAAGTTCGGTGGCAACTGTGTGTGCAGAGATGATCC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000050990.10
ENSMUST00000064595.15
ENSMUST00000090834.13
ENSMUST00000101562.11
CDS CCA 90 bp CCCATCCACAATGATCACGTCGCCCTCAGAGAAAGTCAGCTCGTCTaGGTTGTCAGCCACGCAGTTGTAGAGTGCTTTCACTCGCTTGGG +
Preference number: 5 (lower is better)
Translates to: PIHNDHVALRESQLV*VVSHAVVECFHSLG
Trigger: CCCAAGCGAGTGAAAGCACTCTACAACTGCGTGGCTGACAACCCAGACGAGCTGACTTTCTCTGAGGGCGACGTGATCATTGTGGATGGG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000050990.10
ENSMUST00000064595.15
ENSMUST00000090834.13
ENSMUST00000101562.11
CDS-3UTR CAA 90 bp CTCAAAATAGCATTCTTGGCTGCAGGTCATTCTCCACCTCAGCAGATCACATTAGGCAGGGGCGGGGGCTaGCTCTGTGAGGTCCCAGGT +
Preference number: 5 (lower is better)
Translates to: LKIAFLAAGHSPPQQITLGRGGG*LCEVPG
Trigger: ACCTGGGACCTCACAGAGCAAGCCCCCGCCCCTGCC...TAATGTGATCTGCTGAGGTGGAGAATGACCTGCAGCCAAGAATGCTATTTTGAG
56% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000064595.15
ENSMUST00000090834.13
ENSMUST00000101562.11
CDS TCA 90 bp GATACCGTCCACACCTACAGAGTTTGTCTTCCACAGGGTGTTAGCTaGGGTGGCTGTCTGAACTTTGCCAACATTCCGAGGTGGGAGCGG +
Preference number: 5 (lower is better)
Translates to: DTVHTYRVCLPQGVS*GGCLNFANIPRWER
Trigger: CCGCTCCCACCTCGGAATGTTGGCAAAGTTCAGACAGCCACCTCAGCTAACACCCTGTGGAAGACAAACTCTGTAGGTGTGGACGGTATC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000064595.15
CDS GCA 90 bp GCAAAGGCTGTGGAGCTTCGCCGCGGTGTCGGCATGCTTTTTCCGTaGATATCTCCTCTCCATGTACTTGGCTGTGATGTAGTCCTTCCT +
Preference number: 5 (lower is better)
Translates to: AKAVELRRGVGMLFP*ISPLHVLGCDVVLP
Trigger: AGGAAGGACTACATCACAGCCAAGTACATGGAGAGGAGATATGCACGGAAAAAGCATGCCGACACCGCGGCGAAGCTCCACAGCCTTTGC
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000050990.10
ENSMUST00000064595.15
ENSMUST00000090834.13
ENSMUST00000101562.11
CDS GCA 90 bp CAGGAAGTCTACAATGTGAAGGGAAGTCCGGTCCACAGATCTGACTaGAAGATGGAGGGCTGTCTCATCTGGCTCATGCCCATTGGCCAG +
Preference number: 5 (lower is better)
Translates to: QEVYNVKGSPVHRSD*KMEGCLIWLMPIGQ
Trigger: CTGGCCAATGGGCATGAGCCAGATGAGACAGCCCTCCATCTTGCAGTCAGATCTGTGGACCGGACTTCCCTTCACATTGTAGACTTCCTG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000050990.10
ENSMUST00000064595.15
ENSMUST00000090834.13
ENSMUST00000101562.11
CDS CCA 90 bp TTCAAAATATCTCGAAGTTGTATCAGCTGTCGCCGTTCCTCATCCTaGGCGGTGTGGAGGTCCGTGGAGAGCGTCTCGATGGAAGGCTTG +
Preference number: 5 (lower is better)
Translates to: FKISRSCISCRRSSS*AVWRSVESVSMEGL
Trigger: CAAGCCTTCCATCGAGACGCTCTCCACGGACCTCCACACCGCCCAGGATGAGGAACGGCGACAGCTGATACAACTTCGAGATATTTTGAA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000064595.15
CDS CCA 90 bp AGTAACCCAAAAATGTCTCTGGTCTTGACGGCCTCGCAAAGGCTGTaGAGCTTCGCCGCGGTGTCGGCATGCTTTTTCCGTGCATATCTC +
Preference number: 5 (lower is better)
Translates to: SNPKMSLVLTASQRL*SFAAVSACFFRAYL
Trigger: GAGATATGCACGGAAAAAGCATGCCGACACCGCGGCGAAGCTCCACAGCCTTTGCGAGGCCGTCAAGACCAGAGACATTTTTGGGTTACT
54% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 4 transcripts:
ENSMUST00000050990.10
ENSMUST00000064595.15
ENSMUST00000090834.13
ENSMUST00000101562.11
CDS-3UTR CAA 90 bp CGTTCAGGCCTTATGCTTGCCTCTTTCATTTCCCATATCCTAACCACGGCTCTTTGCAGGGCCATGGCGTaGGACAGAGGACCCGAAGCT +
Preference number: 5 (lower is better)
Translates to: RSGLMLASFISHILTTALCRAMA*DRGPEA
Trigger: AGCTTCGGGTCCTCTGTCCAACGCCATGGCCCTGCA...AAGAGCCGTGGTTAGGATATGGGAAATGAAAGAGGCAAGCATAAGGCCTGAACG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000064595.15
ENSMUST00000090834.13
ENSMUST00000101562.11
CDS CCA 90 bp TGCAAGATGGAGGGCTGTCTCATCTGGCTCATGCCCATTGGCCAGTaGGATTTTCTCTGTCAGGTCCACACCATCAGCATAAGCTTGGAG +
Preference number: 5 (lower is better)
Translates to: CKMEGCLIWLMPIGQ*DFLCQVHTISISLE
Trigger: CTCCAAGCTTATGCTGATGGTGTGGACCTGACAGAGAAAATCCCACTGGCCAATGGGCATGAGCCAGATGAGACAGCCCTCCATCTTGCA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000050990.10
ENSMUST00000064595.15
ENSMUST00000090834.13
ENSMUST00000101562.11
CDS-3UTR CAA 90 bp TGTGGCCCGCACCACATATTCTACCTGTGTGACGGGATGCTGAACGAGGCAAATTCCGAGATGATCTCCTaGGTCAGCTCTTGGACGATG +
Preference number: 5 (lower is better)
Translates to: CGPHHIFYLCDGMLNEANSEMIS*VSSWTM
Trigger: CATCGTCCAAGAGCTGACCAAGGAGATCATCTCGGA...ATTTGCCTCGTTCAGCATCCCGTCACACAGGTAGAATATGTGGTGCGGGCCACA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000064595.15
ENSMUST00000101562.11
CDS-3UTR CAA 90 bp CGTTCAGGCCTTATGCTTGCCTCTTTCATTTCCCATATCCTAACCACGGCTCTTTCGCAGCACACGTCATaGCCCGTCATCCTCTGCACC +
Preference number: 5 (lower is better)
Translates to: RSGLMLASFISHILTTALSQHTS*PVILCT
Trigger: GGTGCAGAGGATGACGGGCAATGACGTGTGCTGCGA...AAGAGCCGTGGTTAGGATATGGGAAATGAAAGAGGCAAGCATAAGGCCTGAACG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000064595.15
ENSMUST00000101562.11
CDS-3UTR CAA 90 bp ATGTCTTTAAAGGTGAATGGATGGCATTGGTGGACAAGGTCCAGGGTAGGGCGAATGTCACTGCCTGGGTaGGGCTTGACTGGGTCCTCA +
Preference number: 5 (lower is better)
Translates to: MSLKVNGWHWWTRSRVGRMSLPG*GLTGSS
Trigger: TGAGGACCCAGTCAAGCCCAACCCAGGCAGTGACAT...TCGCCCTACCCTGGACCTTGTCCACCAATGCCATCCATTCACCTTTAAAGACAT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000064595.15
ENSMUST00000090834.13
ENSMUST00000101562.11
CDS-3UTR CAA 90 bp TGTGGCCCGCACCACATATTCTACCTGTGTGACGGGATGCTGAACGAGGCAAATAAAATGTCTCTGGTCTaGACGGCCTCGCAAAGGCTG +
Preference number: 5 (lower is better)
Translates to: CGPHHIFYLCDGMLNEANKMSLV*TASQRL
Trigger: CAGCCTTTGCGAGGCCGTCAAGACCAGAGACATTTT...ATTTGCCTCGTTCAGCATCCCGTCACACAGGTAGAATATGTGGTGCGGGCCACA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000064595.15
ENSMUST00000090834.13
ENSMUST00000101562.11
CDS-3UTR CAA 90 bp TTTAGGAGTGATGCGATGGGCTTACATAGTGTAACTGGGATGTTTGGGGGCACTCCCCGCAGGAGGAGCTaGAGGCACTCAGCATTGTCT +
Preference number: 5 (lower is better)
Translates to: FRSDAMGLHSVTGMFGGTPRRRS*RHSALS
Trigger: AGACAATGCTGAGTGCCTCAAGCTCCTCCTGCGGGG...AGTGCCCCCAAACATCCCAGTTACACTATGTAAGCCCATCGCATCACTCCTAAA
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000064595.15
ENSMUST00000090834.13
ENSMUST00000101562.11
CDS-3UTR CAA 90 bp CGTTCAGGCCTTATGCTTGCCTCTTTCATTTCCCATATCCTAACCACGGCTCTTCCAGGTTGGGAGGACTaGCTCGGCTGGTTCATGGCT +
Preference number: 5 (lower is better)
Translates to: RSGLMLASFISHILTTALPGWED*LGWFMA
Trigger: AGCCATGAACCAGCCGAGCAAGTCCTCCCAACCTGG...AAGAGCCGTGGTTAGGATATGGGAAATGAAAGAGGCAAGCATAAGGCCTGAACG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000064595.15
ENSMUST00000090834.13
ENSMUST00000101562.11
CDS-3UTR CAA 90 bp TTACATAGTGTAACTGGGATGTTTGGGGGCACTGGGCTCCCCAAGGTCTACAGAAGTGCTTTCACTCGCTaGGGCTTTGACTTGGTCGCC +
Preference number: 5 (lower is better)
Translates to: LHSVTGMFGGTGLPKVYRSAFTR*GFDLVA
Trigger: GGCGACCAAGTCAAAGCCCAAGCGAGTGAAAGCACT...TCTGTAGACCTTGGGGAGCCCAGTGCCCCCAAACATCCCAGTTACACTATGTAA
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000064595.15
ENSMUST00000090834.13
ENSMUST00000101562.11
CDS TCA 90 bp AGTCGCAGCACACGTCATTGCCCGTCATCCTCTGCACCTCCGAGATaGTCTCCTTGGTCAGCTCTTGGACGATGTTATTTTCTCCAGTGT +
Preference number: 5 (lower is better)
Translates to: SRSTRHCPSSSAPPR*SPWSALGRCYFLQC
Trigger: ACACTGGAGAAAATAACATCGTCCAAGAGCTGACCAAGGAGATCATCTCGGAGGTGCAGAGGATGACGGGCAATGACGTGTGCTGCGACT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000050990.10
ENSMUST00000064595.15
ENSMUST00000101562.11
CDS TCA 90 bp CATTCTGCAAGATGCTGGGCCCAAAGCCCCTCTGCTTGTCCTTGGTaGGGTTTGCAGTATCTCTGGCCAAAGACACAGCATTGGACTGAA +
Preference number: 5 (lower is better)
Translates to: HSARCWAQSPSACPW*GLQYLWPKTQHWTE
Trigger: TTCAGTCCAATGCTGTGTCTTTGGCCAGAGATACTGCAAACCTCACCAAGGACAAGCAGAGGGGCTTTGGGCCCAGCATCTTGCAGAATG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000050990.10
ENSMUST00000064595.15
ENSMUST00000090834.13
ENSMUST00000101562.11
CDS GCA 90 bp TCAGAAACGCGCTTCCTAAGTCTGGATCATCTCTGCACACACAGTTaGCACCGAACTTCTCCAGAGCCTGGGTGTACTGTTCCTCGTTCT +
Preference number: 5 (lower is better)
Translates to: SETRFLSLDHLCTHS*HRTSPEPGCTVPRS
Trigger: AGAACGAGGAACAGTACACCCAGGCTCTGGAGAAGTTCGGTGGCAACTGTGTGTGCAGAGATGATCCAGACTTAGGAAGCGCGTTTCTGA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000050990.10
ENSMUST00000064595.15
ENSMUST00000090834.13
ENSMUST00000101562.11
CDS CCA 90 bp TTCAAAATATCTCGAAGTTGTATCAGCTGTCGCCGTTCCTCATCCTaGGCCTGTTTGATGGTGTGGAGGTCCGTGGAGAGCGTCTCGATG +
Preference number: 5 (lower is better)
Translates to: FKISRSCISCRRSSS*ACLMVWRSVESVSM
Trigger: CATCGAGACGCTCTCCACGGACCTCCACACCATCAAACAGGCCCAGGATGAGGAACGGCGACAGCTGATACAACTTCGAGATATTTTGAA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000050990.10
ENSMUST00000090834.13
ENSMUST00000101562.11
CDS-3UTR CAA 90 bp AAGCTGTTTTTAGGCTCAGCTACTCCTGGAAATACAGGATCCTGGGTATACAGTCTGCCTGGGTTGGGCTaGACTGGGTCCTCAGACGGT +
Preference number: 5 (lower is better)
Translates to: KLFLGSATPGNTGSWVYSLPGLG*TGSSDG
Trigger: ACCGTCTGAGGACCCAGTCAAGCCCAACCCAGGCAG...ACTGTATACCCAGGATCCTGTATTTCCAGGAGTAGCTGAGCCTAAAAACAGCTT
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000050990.10
ENSMUST00000064595.15
ENSMUST00000090834.13
ENSMUST00000101562.11
CDS-3UTR CAA 90 bp CTCAAAATAGCATTCTTGGCTGCAGGTCATTCTCCACCTCAGCAGATCACATTACTGCCTGGGTTGGGCTaGACTGGGTCCTCAGACGGT +
Preference number: 5 (lower is better)
Translates to: LKIAFLAAGHSPPQQITLLPGLG*TGSSDG
Trigger: ACCGTCTGAGGACCCAGTCAAGCCCAACCCAGGCAG...TAATGTGATCTGCTGAGGTGGAGAATGACCTGCAGCCAAGAATGCTATTTTGAG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000064595.15
ENSMUST00000090834.13
ENSMUST00000101562.11
CDS-3UTR CAA 90 bp CCGCACCACATATTCTACCTGTGTGACGGGATGCTGAACGAGGCAAATCCTCAACCCCTCTGCTTGTCCTaGGTGAGGTTTGCAGTATCT +
Preference number: 5 (lower is better)
Translates to: PHHIFYLCDGMLNEANPQPLCLS*VRFAVS
Trigger: AGATACTGCAAACCTCACCAAGGACAAGCAGAGGGG...TTGAGGATTTGCCTCGTTCAGCATCCCGTCACACAGGTAGAATATGTGGTGCGG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000064595.15
ENSMUST00000090834.13
ENSMUST00000101562.11
CDS-3UTR CAA 90 bp ACCAATGTCGGAATTGGGCTAAGGAAAACTAAGAATCCCCCAAATTTGTTTAAGGGCAGGGGCGGGGGCTaGCTCTGTGAGGTCCCAGGT +
Preference number: 5 (lower is better)
Translates to: TNVGIGLRKTKNPPNLFKGRGGG*LCEVPG
Trigger: ACCTGGGACCTCACAGAGCAAGCCCCCGCCCCTGCC...CTTAAACAAATTTGGGGGATTCTTAGTTTTCCTTAGCCCAATTCCGACATTGGT
52% GC, longest homopolymer 5 nt, total homopolymer stretches 18 nt.
Matches the following 4 transcripts:
ENSMUST00000050990.10
ENSMUST00000064595.15
ENSMUST00000090834.13
ENSMUST00000101562.11
CDS-3UTR CAA 90 bp AAGCTGTTTTTAGGCTCAGCTACTCCTGGAAATACAGGATCCTGGGTATACAGTTGCAGGGCCATGGCGTaGGACAGAGGACCCGAAGCT +
Preference number: 5 (lower is better)
Translates to: KLFLGSATPGNTGSWVYSCRAMA*DRGPEA
Trigger: AGCTTCGGGTCCTCTGTCCAACGCCATGGCCCTGCA...ACTGTATACCCAGGATCCTGTATTTCCAGGAGTAGCTGAGCCTAAAAACAGCTT
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000050990.10
ENSMUST00000064595.15
ENSMUST00000090834.13
ENSMUST00000101562.11
CDS-3UTR CAA 90 bp AGGTATGACTGTTCACAACATGGGTCCTACAAACATGCGGGAGATCATGGCAGCAGTGCTTTCACTCGCTaGGGCTTTGACTTGGTCGCC +
Preference number: 5 (lower is better)
Translates to: RYDCSQHGSYKHAGDHGSSAFTR*GFDLVA
Trigger: GGCGACCAAGTCAAAGCCCAAGCGAGTGAAAGCACT...GCTGCCATGATCTCCCGCATGTTTGTAGGACCCATGTTGTGAACAGTCATACCT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000064595.15
ENSMUST00000090834.13
ENSMUST00000101562.11
CDS-3UTR CAA 90 bp CGTTCAGGCCTTATGCTTGCCTCTTTCATTTCCCATATCCTAACCACGGCTCTTTCATCCTGGGCCTGTTaGATGGTGTGGAGGTCCGTG +
Preference number: 5 (lower is better)
Translates to: RSGLMLASFISHILTTALSSWAC*MVWRSV
Trigger: CACGGACCTCCACACCATCAAACAGGCCCAGGATGA...AAGAGCCGTGGTTAGGATATGGGAAATGAAAGAGGCAAGCATAAGGCCTGAACG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000090834.13
ENSMUST00000101562.11
CDS TCA 90 bp CGGCATGCTTTTTCCGTGCATATCTCCTCTCCATGTACTTGGCTGTaGTGTAGTCCTTCCTTGCAATCATGTCACTGCCTGGGTTGGGCT +
Preference number: 5 (lower is better)
Translates to: RHAFSVHISSPCTWL*CSPSLQSCHCLGWA
Trigger: AGCCCAACCCAGGCAGTGACATGATTGCAAGGAAGGACTACATCACAGCCAAGTACATGGAGAGGAGATATGCACGGAAAAAGCATGCCG
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000050990.10
ENSMUST00000064595.15
ENSMUST00000090834.13
ENSMUST00000101562.11
CDS GCA 90 bp ACACAGAGAACTTCAGAAACGCGCTTCCTAAGTCTGGATCATCTCTaGACACACAGTTGCCACCGAACTTCTCCAGAGCCTGGGTGTACT +
Preference number: 5 (lower is better)
Translates to: TQRTSETRFLSLDHL*THSCHRTSPEPGCT
Trigger: AGTACACCCAGGCTCTGGAGAAGTTCGGTGGCAACTGTGTGTGCAGAGATGATCCAGACTTAGGAAGCGCGTTTCTGAAGTTCTCTGTGT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000050990.10
ENSMUST00000064595.15
ENSMUST00000090834.13
ENSMUST00000101562.11
CDS CCA 90 bp CCCGTCATCCTCTGCACCTCCGAGATGATCTCCTTGGTCAGCTCTTaGACGATGTTATTTTCTCCAGTGTTGTCATCACCCTTAAAGGCG +
Preference number: 5 (lower is better)
Translates to: PVILCTSEMISLVSS*TMLFSPVLSSPLKA
Trigger: CGCCTTTAAGGGTGATGACAACACTGGAGAAAATAACATCGTCCAAGAGCTGACCAAGGAGATCATCTCGGAGGTGCAGAGGATGACGGG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000050990.10
ENSMUST00000064595.15
ENSMUST00000101562.11
CDS-3UTR CAA 90 bp AAGCTGTTTTTAGGCTCAGCTACTCCTGGAAATACAGGATCCTGGGTATACAGTTCGCAGCACACGTCATaGCCCGTCATCCTCTGCACC +
Preference number: 5 (lower is better)
Translates to: KLFLGSATPGNTGSWVYSSQHTS*PVILCT
Trigger: GGTGCAGAGGATGACGGGCAATGACGTGTGCTGCGA...ACTGTATACCCAGGATCCTGTATTTCCAGGAGTAGCTGAGCCTAAAAACAGCTT
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000050990.10
ENSMUST00000064595.15
ENSMUST00000101562.11
CDS-3UTR CAA 90 bp ATGTCTTTAAAGGTGAATGGATGGCATTGGTGGACAAGGTCCAGGGTAGGGCGAAAAATGTCTCTGGTCTaGACGGCCTCGCAAAGGCTG +
Preference number: 5 (lower is better)
Translates to: MSLKVNGWHWWTRSRVGRKMSLV*TASQRL
Trigger: CAGCCTTTGCGAGGCCGTCAAGACCAGAGACATTTT...TCGCCCTACCCTGGACCTTGTCCACCAATGCCATCCATTCACCTTTAAAGACAT
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000064595.15
ENSMUST00000090834.13
ENSMUST00000101562.11
CDS-3UTR CAA 90 bp ATGTCTTTAAAGGTGAATGGATGGCATTGGTGGACAAGGTCCAGGGTAGGGCGATCTGGCTCATGCCCATaGGCCAGTGGGATTTTCTCT +
Preference number: 5 (lower is better)
Translates to: MSLKVNGWHWWTRSRVGRSGSCP*ASGIFS
Trigger: AGAGAAAATCCCACTGGCCAATGGGCATGAGCCAGA...TCGCCCTACCCTGGACCTTGTCCACCAATGCCATCCATTCACCTTTAAAGACAT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000064595.15
ENSMUST00000090834.13
ENSMUST00000101562.11
CDS-3UTR CAA 90 bp AAGCTGTTTTTAGGCTCAGCTACTCCTGGAAATACAGGATCCTGGGTATACAGTCCCCGCAGGAGGAGCTaGAGGCACTCAGCATTGTCT +
Preference number: 5 (lower is better)
Translates to: KLFLGSATPGNTGSWVYSPRRRS*RHSALS
Trigger: AGACAATGCTGAGTGCCTCAAGCTCCTCCTGCGGGG...ACTGTATACCCAGGATCCTGTATTTCCAGGAGTAGCTGAGCCTAAAAACAGCTT
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000050990.10
ENSMUST00000064595.15
ENSMUST00000090834.13
ENSMUST00000101562.11
CDS-3UTR CAA 90 bp GCTTACTGTGGCCCGCACCACATATTCTACCTGTGTGACGGGATGCTGAACGAGTTCACCTTGATTTCATaGACCTTCAGCAGGTACTCA +
Preference number: 5 (lower is better)
Translates to: AYCGPHHIFYLCDGMLNEFTLIS*TFSRYS
Trigger: TGAGTACCTGCTGAAGGTCAATGAAATCAAGGTGAA...CTCGTTCAGCATCCCGTCACACAGGTAGAATATGTGGTGCGGGCCACAGTAAGC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000064595.15
ENSMUST00000090834.13
ENSMUST00000101562.11
CDS-3UTR CAA 90 bp CCAAATTTGTTTAAGCTGTTTTTAGGCTCAGCTACTCCTGGAAATACAGGATCCTGGCAGGTTAGCAGGTaGAGCTTGGCAGGTGGCCGG +
Preference number: 5 (lower is better)
Translates to: PNLFKLFLGSATPGNTGSWQVSR*SLAGGR
Trigger: CCGGCCACCTGCCAAGCTCAACCTGCTAACCTGCCA...GGATCCTGTATTTCCAGGAGTAGCTGAGCCTAAAAACAGCTTAAACAAATTTGG
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000050990.10
ENSMUST00000064595.15
ENSMUST00000101562.11
CDS-3UTR CAA 90 bp TTTAGGAGTGATGCGATGGGCTTACATAGTGTAACTGGGATGTTTGGGGGCACTTCCGAGATGATCTCCTaGGTCAGCTCTTGGACGATG +
Preference number: 5 (lower is better)
Translates to: FRSDAMGLHSVTGMFGGTSEMIS*VSSWTM
Trigger: CATCGTCCAAGAGCTGACCAAGGAGATCATCTCGGA...AGTGCCCCCAAACATCCCAGTTACACTATGTAAGCCCATCGCATCACTCCTAAA
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000064595.15
ENSMUST00000101562.11
CDS-3UTR CAA 90 bp TTGTTTAAGCTGTTTTTAGGCTCAGCTACTCCTGGAAATACAGGATCCTGGGTAGTCAGGATGCCCAGGTaGGTAGAGAGCCACGTCGGA +
Preference number: 5 (lower is better)
Translates to: LFKLFLGSATPGNTGSWVVRMPR*VESHVG
Trigger: TCCGACGTGGCTCTCTACCAACCTGGGCATCCTGAC...TACCCAGGATCCTGTATTTCCAGGAGTAGCTGAGCCTAAAAACAGCTTAAACAA
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000050990.10
ENSMUST00000064595.15
ENSMUST00000101562.11
CDS-3UTR CAA 90 bp CCAAATTTGTTTAAGCTGTTTTTAGGCTCAGCTACTCCTGGAAATACAGGATCCCTGCCTGGGTTGGGCTaGACTGGGTCCTCAGACGGT +
Preference number: 5 (lower is better)
Translates to: PNLFKLFLGSATPGNTGSLPGLG*TGSSDG
Trigger: ACCGTCTGAGGACCCAGTCAAGCCCAACCCAGGCAG...GGATCCTGTATTTCCAGGAGTAGCTGAGCCTAAAAACAGCTTAAACAAATTTGG
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000050990.10
ENSMUST00000064595.15
ENSMUST00000090834.13
ENSMUST00000101562.11
CDS-3UTR CAA 90 bp TTTAGGAGTGATGCGATGGGCTTACATAGTGTAACTGGGATGTTTGGGGGCACTAAAATGTCTCTGGTCTaGACGGCCTCGCAAAGGCTG +
Preference number: 5 (lower is better)
Translates to: FRSDAMGLHSVTGMFGGTKMSLV*TASQRL
Trigger: CAGCCTTTGCGAGGCCGTCAAGACCAGAGACATTTT...AGTGCCCCCAAACATCCCAGTTACACTATGTAAGCCCATCGCATCACTCCTAAA
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000064595.15
ENSMUST00000090834.13
ENSMUST00000101562.11
CDS-3UTR CAA 90 bp TTGTTTAAGCTGTTTTTAGGCTCAGCTACTCCTGGAAATACAGGATCCTGGGTACCCCGCAGGAGGAGCTaGAGGCACTCAGCATTGTCT +
Preference number: 5 (lower is better)
Translates to: LFKLFLGSATPGNTGSWVPRRRS*RHSALS
Trigger: AGACAATGCTGAGTGCCTCAAGCTCCTCCTGCGGGG...TACCCAGGATCCTGTATTTCCAGGAGTAGCTGAGCCTAAAAACAGCTTAAACAA
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000050990.10
ENSMUST00000064595.15
ENSMUST00000090834.13
ENSMUST00000101562.11
CDS-3UTR CAA 90 bp TTTAGGAGTGATGCGATGGGCTTACATAGTGTAACTGGGATGTTTGGGGGCACTCCCCTCTGCTTGTCCTaGGTGAGGTTTGCAGTATCT +
Preference number: 5 (lower is better)
Translates to: FRSDAMGLHSVTGMFGGTPLCLS*VRFAVS
Trigger: AGATACTGCAAACCTCACCAAGGACAAGCAGAGGGG...AGTGCCCCCAAACATCCCAGTTACACTATGTAAGCCCATCGCATCACTCCTAAA
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000064595.15
ENSMUST00000090834.13
ENSMUST00000101562.11
CDS-3UTR CAA 90 bp CGTTCAGGCCTTATGCTTGCCTCTTTCATTTCCCATATCCTAACCACGGCTCTTGTGGTGGTCAGGGGATaGGTAGATGTCACTCGAAGA +
Preference number: 5 (lower is better)
Translates to: RSGLMLASFISHILTTALVVVRG*VDVTRR
Trigger: TCTTCGAGTGACATCTACCAATCCCCTGACCACCAC...AAGAGCCGTGGTTAGGATATGGGAAATGAAAGAGGCAAGCATAAGGCCTGAACG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000064595.15
CDS-3UTR CAA 90 bp CTCAGCTACTCCTGGAAATACAGGATCCTGGGTATACAGTTAAATAGCTTCTCACCAGGTTGGGAGGACTaGCTCGGCTGGTTCATGGCT +
Preference number: 5 (lower is better)
Translates to: LSYSWKYRILGIQLNSFSPGWED*LGWFMA
Trigger: AGCCATGAACCAGCCGAGCAAGTCCTCCCAACCTGG...TGAGAAGCTATTTAACTGTATACCCAGGATCCTGTATTTCCAGGAGTAGCTGAG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000050990.10
ENSMUST00000064595.15
ENSMUST00000090834.13
ENSMUST00000101562.11
CDS-3UTR CAA 90 bp GACATTCCAGTTTGTCCTGTTTTCCTTGAAAGAAACAAAGAGAGAGCTCTGAGCCCAGGTTGGGAGGACTaGCTCGGCTGGTTCATGGCT +
Preference number: 5 (lower is better)
Translates to: DIPVCPVFLERNKERALSPGWED*LGWFMA
Trigger: AGCCATGAACCAGCCGAGCAAGTCCTCCCAACCTGG...GCTCAGAGCTCTCTCTTTGTTTCTTTCAAGGAAAACAGGACAAACTGGAATGTC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000064595.15
ENSMUST00000090834.13
ENSMUST00000101562.11
CDS-3UTR CAA 90 bp CCATATCCTAACCACGGCTCTTACCTGTGCTTAATGTTATTAAGTAGAGGTATGTGCAGGGCCATGGCGTaGGACAGAGGACCCGAAGCT +
Preference number: 5 (lower is better)
Translates to: PYPNHGSYLCLMLLSRGMCRAMA*DRGPEA
Trigger: AGCTTCGGGTCCTCTGTCCAACGCCATGGCCCTGCA...CATACCTCTACTTAATAACATTAAGCACAGGTAAGAGCCGTGGTTAGGATATGG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000064595.15
ENSMUST00000090834.13
ENSMUST00000101562.11
CDS-3UTR CAA 90 bp CTCAAAATAGCATTCTTGGCTGCAGGTCATTCTCCACCTCAGCAGATCACATTATCATCCTGGGCCTGTTaGATGGTGTGGAGGTCCGTG +
Preference number: 5 (lower is better)
Translates to: LKIAFLAAGHSPPQQITLSSWAC*MVWRSV
Trigger: CACGGACCTCCACACCATCAAACAGGCCCAGGATGA...TAATGTGATCTGCTGAGGTGGAGAATGACCTGCAGCCAAGAATGCTATTTTGAG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000090834.13
ENSMUST00000101562.11
CDS-3UTR CAA 90 bp GTTTGGGGGCACTGGGCTCCCCAAGGTCTACAGATTTCTGATATGTTCTTGACTGCCAGCCCAGAGATATaGATTGCCTTCACAGATTTC +
Preference number: 5 (lower is better)
Translates to: VWGHWAPQGLQISDMFLTASPEI*IAFTDF
Trigger: GAAATCTGTGAAGGCAATCAATATCTCTGGGCTGGC...AGTCAAGAACATATCAGAAATCTGTAGACCTTGGGGAGCCCAGTGCCCCCAAAC
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000064595.15
ENSMUST00000090834.13
ENSMUST00000101562.11
CDS-3UTR CAA 90 bp CGTTCAGGCCTTATGCTTGCCTCTTTCATTTCCCATATCCTAACCACGGCTCTTAGTGCCGTCAACTCCTaGGTGAACACAGAGAACTTC +
Preference number: 5 (lower is better)
Translates to: RSGLMLASFISHILTTALSAVNS*VNTENF
Trigger: GAAGTTCTCTGTGTTCACCAAGGAGTTGACGGCACT...AAGAGCCGTGGTTAGGATATGGGAAATGAAAGAGGCAAGCATAAGGCCTGAACG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000064595.15
ENSMUST00000090834.13
ENSMUST00000101562.11
CDS-3UTR CAA 90 bp GTTTTTAGGCTCAGCTACTCCTGGAAATACAGGATCCTGGGTATACAGTTAAATGTTAGCAGGTTGAGCTaGGCAGGTGGCCGGTTGGCA +
Preference number: 5 (lower is better)
Translates to: VFRLSYSWKYRILGIQLNVSRLS*AGGRLA
Trigger: TGCCAACCGGCCACCTGCCAAGCTCAACCTGCTAAC...ATTTAACTGTATACCCAGGATCCTGTATTTCCAGGAGTAGCTGAGCCTAAAAAC
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000050990.10
ENSMUST00000064595.15
ENSMUST00000101562.11
CDS-3UTR CAA 90 bp CCAAATTTGTTTAAGCTGTTTTTAGGCTCAGCTACTCCTGGAAATACAGGATCCTCGCAGCACACGTCATaGCCCGTCATCCTCTGCACC +
Preference number: 5 (lower is better)
Translates to: PNLFKLFLGSATPGNTGSSQHTS*PVILCT
Trigger: GGTGCAGAGGATGACGGGCAATGACGTGTGCTGCGA...GGATCCTGTATTTCCAGGAGTAGCTGAGCCTAAAAACAGCTTAAACAAATTTGG
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000050990.10
ENSMUST00000064595.15
ENSMUST00000101562.11
CDS-3UTR CAA 90 bp GTTTTTAGGCTCAGCTACTCCTGGAAATACAGGATCCTGGGTATACAGTTAAATGTCAGGATGCCCAGGTaGGTAGAGAGCCACGTCGGA +
Preference number: 5 (lower is better)
Translates to: VFRLSYSWKYRILGIQLNVRMPR*VESHVG
Trigger: TCCGACGTGGCTCTCTACCAACCTGGGCATCCTGAC...ATTTAACTGTATACCCAGGATCCTGTATTTCCAGGAGTAGCTGAGCCTAAAAAC
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000050990.10
ENSMUST00000064595.15
ENSMUST00000101562.11
CDS-3UTR CAA 90 bp TGCTTTCCTTTCAGTTGCTTTCTCTTCTCAGTTTGCAAAGAGCGAGTAACAGGAATGTCACTGCCTGGGTaGGGCTTGACTGGGTCCTCA +
Preference number: 5 (lower is better)
Translates to: CFPFSCFLFSVCKERVTGMSLPG*GLTGSS
Trigger: TGAGGACCCAGTCAAGCCCAACCCAGGCAGTGACAT...TCCTGTTACTCGCTCTTTGCAAACTGAGAAGAGAAAGCAACTGAAAGGAAAGCA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000064595.15
ENSMUST00000090834.13
ENSMUST00000101562.11
CDS-3UTR CAA 90 bp TTGTTTAAGCTGTTTTTAGGCTCAGCTACTCCTGGAAATACAGGATCCTGGGTAAGGGCTGTGCTGCCCTaGCCTGTCTGTTTATCCAGG +
Preference number: 5 (lower is better)
Translates to: LFKLFLGSATPGNTGSWVRAVLP*PVCLSR
Trigger: CCTGGATAAACAGACAGGCAAGGGCAGCACAGCCCT...TACCCAGGATCCTGTATTTCCAGGAGTAGCTGAGCCTAAAAACAGCTTAAACAA
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000050990.10
ENSMUST00000064595.15
ENSMUST00000090834.13
ENSMUST00000101562.11
CDS-3UTR CAA 90 bp GACATTCCAGTTTGTCCTGTTTTCCTTGAAAGAAACAAAGAGAGAGCTCTGAGCAGGGCTGTGCTGCCCTaGCCTGTCTGTTTATCCAGG +
Preference number: 5 (lower is better)
Translates to: DIPVCPVFLERNKERALSRAVLP*PVCLSR
Trigger: CCTGGATAAACAGACAGGCAAGGGCAGCACAGCCCT...GCTCAGAGCTCTCTCTTTGTTTCTTTCAAGGAAAACAGGACAAACTGGAATGTC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000064595.15
ENSMUST00000090834.13
ENSMUST00000101562.11
CDS-3UTR CAA 90 bp CCATATCCTAACCACGGCTCTTACCTGTGCTTAATGTTATTAAGTAGAGGTATGCCCCGCAGGAGGAGCTaGAGGCACTCAGCATTGTCT +
Preference number: 5 (lower is better)
Translates to: PYPNHGSYLCLMLLSRGMPRRRS*RHSALS
Trigger: AGACAATGCTGAGTGCCTCAAGCTCCTCCTGCGGGG...CATACCTCTACTTAATAACATTAAGCACAGGTAAGAGCCGTGGTTAGGATATGG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000064595.15
ENSMUST00000090834.13
ENSMUST00000101562.11
CDS-3UTR CAA 90 bp GTTTTTAGGCTCAGCTACTCCTGGAAATACAGGATCCTGGGTATACAGTTAAATATGTCACTGCCTGGGTaGGGCTTGACTGGGTCCTCA +
Preference number: 5 (lower is better)
Translates to: VFRLSYSWKYRILGIQLNMSLPG*GLTGSS
Trigger: TGAGGACCCAGTCAAGCCCAACCCAGGCAGTGACAT...ATTTAACTGTATACCCAGGATCCTGTATTTCCAGGAGTAGCTGAGCCTAAAAAC
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000050990.10
ENSMUST00000064595.15
ENSMUST00000090834.13
ENSMUST00000101562.11
CDS-3UTR CAA 90 bp AAGCTGTTTTTAGGCTCAGCTACTCCTGGAAATACAGGATCCTGGGTATACAGTCCCCTCTGCTTGTCCTaGGTGAGGTTTGCAGTATCT +
Preference number: 5 (lower is better)
Translates to: KLFLGSATPGNTGSWVYSPLCLS*VRFAVS
Trigger: AGATACTGCAAACCTCACCAAGGACAAGCAGAGGGG...ACTGTATACCCAGGATCCTGTATTTCCAGGAGTAGCTGAGCCTAAAAACAGCTT
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000050990.10
ENSMUST00000064595.15
ENSMUST00000090834.13
ENSMUST00000101562.11
CDS-3UTR CAA 90 bp CTCAGCTACTCCTGGAAATACAGGATCCTGGGTATACAGTTAAATAGCTTCTCAAAAATGTCTCTGGTCTaGACGGCCTCGCAAAGGCTG +
Preference number: 5 (lower is better)
Translates to: LSYSWKYRILGIQLNSFSKMSLV*TASQRL
Trigger: CAGCCTTTGCGAGGCCGTCAAGACCAGAGACATTTT...TGAGAAGCTATTTAACTGTATACCCAGGATCCTGTATTTCCAGGAGTAGCTGAG
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000050990.10
ENSMUST00000064595.15
ENSMUST00000090834.13
ENSMUST00000101562.11
CDS-3UTR CAA 90 bp GACATTCCAGTTTGTCCTGTTTTCCTTGAAAGAAACAAAGAGAGAGCTCTGAGCTCTGGCTCATGCCCATaGGCCAGTGGGATTTTCTCT +
Preference number: 5 (lower is better)
Translates to: DIPVCPVFLERNKERALSSGSCP*ASGIFS
Trigger: AGAGAAAATCCCACTGGCCAATGGGCATGAGCCAGA...GCTCAGAGCTCTCTCTTTGTTTCTTTCAAGGAAAACAGGACAAACTGGAATGTC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000064595.15
ENSMUST00000090834.13
ENSMUST00000101562.11
CDS-3UTR CAA 90 bp ACCAATGTCGGAATTGGGCTAAGGAAAACTAAGAATCCCCCAAATTTGTTTAAGAGGGCTGTGCTGCCCTaGCCTGTCTGTTTATCCAGG +
Preference number: 5 (lower is better)
Translates to: TNVGIGLRKTKNPPNLFKRAVLP*PVCLSR
Trigger: CCTGGATAAACAGACAGGCAAGGGCAGCACAGCCCT...CTTAAACAAATTTGGGGGATTCTTAGTTTTCCTTAGCCCAATTCCGACATTGGT
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000050990.10
ENSMUST00000064595.15
ENSMUST00000090834.13
ENSMUST00000101562.11
CDS-3UTR CAA 90 bp CCAAATTTGTTTAAGCTGTTTTTAGGCTCAGCTACTCCTGGAAATACAGGATCCAGTGCTTTCACTCGCTaGGGCTTTGACTTGGTCGCC +
Preference number: 5 (lower is better)
Translates to: PNLFKLFLGSATPGNTGSSAFTR*GFDLVA
Trigger: GGCGACCAAGTCAAAGCCCAAGCGAGTGAAAGCACT...GGATCCTGTATTTCCAGGAGTAGCTGAGCCTAAAAACAGCTTAAACAAATTTGG
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000050990.10
ENSMUST00000064595.15
ENSMUST00000090834.13
ENSMUST00000101562.11
CDS-3UTR CAA 90 bp ACCAATGTCGGAATTGGGCTAAGGAAAACTAAGAATCCCCCAAATTTGTTTAAGTCATCCTGGGCCTGTTaGATGGTGTGGAGGTCCGTG +
Preference number: 5 (lower is better)
Translates to: TNVGIGLRKTKNPPNLFKSSWAC*MVWRSV
Trigger: CACGGACCTCCACACCATCAAACAGGCCCAGGATGA...CTTAAACAAATTTGGGGGATTCTTAGTTTTCCTTAGCCCAATTCCGACATTGGT
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000050990.10
ENSMUST00000090834.13
ENSMUST00000101562.11
CDS-3UTR CAA 90 bp AAGCTGTTTTTAGGCTCAGCTACTCCTGGAAATACAGGATCCTGGGTATACAGTGCCAGCCCAGAGATATaGATTGCCTTCACAGATTTC +
Preference number: 5 (lower is better)
Translates to: KLFLGSATPGNTGSWVYSASPEI*IAFTDF
Trigger: GAAATCTGTGAAGGCAATCAATATCTCTGGGCTGGC...ACTGTATACCCAGGATCCTGTATTTCCAGGAGTAGCTGAGCCTAAAAACAGCTT
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000050990.10
ENSMUST00000064595.15
ENSMUST00000090834.13
ENSMUST00000101562.11
CDS-3UTR CAA 90 bp GTTTTTAGGCTCAGCTACTCCTGGAAATACAGGATCCTGGGTATACAGTTAAATTCTCTGCACACACAGTaGCCACCGAACTTCTCCAGA +
Preference number: 5 (lower is better)
Translates to: VFRLSYSWKYRILGIQLNSLHTQ*PPNFSR
Trigger: TCTGGAGAAGTTCGGTGGCAACTGTGTGTGCAGAGA...ATTTAACTGTATACCCAGGATCCTGTATTTCCAGGAGTAGCTGAGCCTAAAAAC
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000050990.10
ENSMUST00000064595.15
ENSMUST00000090834.13
ENSMUST00000101562.11
CDS-3UTR CAA 90 bp TTTAGGAGTGATGCGATGGGCTTACATAGTGTAACTGGGATGTTTGGGGGCACTACTCCCTTTTTCACCTaGATTTCATTGACCTTCAGC +
Preference number: 5 (lower is better)
Translates to: FRSDAMGLHSVTGMFGGTTPFFT*ISLTFS
Trigger: GCTGAAGGTCAATGAAATCAAGGTGAAAAAGGGAGT...AGTGCCCCCAAACATCCCAGTTACACTATGTAAGCCCATCGCATCACTCCTAAA
46% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 3 transcripts:
ENSMUST00000064595.15
ENSMUST00000090834.13
ENSMUST00000101562.11
CDS-3UTR CAA 90 bp AAGCTGTTTTTAGGCTCAGCTACTCCTGGAAATACAGGATCCTGGGTATACAGTCTCCTTGGTCAGCTCTaGGACGATGTTATTTTCTCC +
Preference number: 5 (lower is better)
Translates to: KLFLGSATPGNTGSWVYSLLGQL*DDVIFS
Trigger: GGAGAAAATAACATCGTCCAAGAGCTGACCAAGGAG...ACTGTATACCCAGGATCCTGTATTTCCAGGAGTAGCTGAGCCTAAAAACAGCTT
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000050990.10
ENSMUST00000064595.15
ENSMUST00000101562.11
CDS-3UTR CAA 90 bp GTTTTTAGGCTCAGCTACTCCTGGAAATACAGGATCCTGGGTATACAGTTAAATTCCGAGATGATCTCCTaGGTCAGCTCTTGGACGATG +
Preference number: 5 (lower is better)
Translates to: VFRLSYSWKYRILGIQLNSEMIS*VSSWTM
Trigger: CATCGTCCAAGAGCTGACCAAGGAGATCATCTCGGA...ATTTAACTGTATACCCAGGATCCTGTATTTCCAGGAGTAGCTGAGCCTAAAAAC
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000050990.10
ENSMUST00000064595.15
ENSMUST00000101562.11
CDS-3UTR CAA 90 bp CCAAATTTGTTTAAGCTGTTTTTAGGCTCAGCTACTCCTGGAAATACAGGATCCTCTGGCTCATGCCCATaGGCCAGTGGGATTTTCTCT +
Preference number: 5 (lower is better)
Translates to: PNLFKLFLGSATPGNTGSSGSCP*ASGIFS
Trigger: AGAGAAAATCCCACTGGCCAATGGGCATGAGCCAGA...GGATCCTGTATTTCCAGGAGTAGCTGAGCCTAAAAACAGCTTAAACAAATTTGG
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000050990.10
ENSMUST00000064595.15
ENSMUST00000090834.13
ENSMUST00000101562.11
CDS-3UTR CAA 90 bp CCATATCCTAACCACGGCTCTTACCTGTGCTTAATGTTATTAAGTAGAGGTATGTCTGGCTCATGCCCATaGGCCAGTGGGATTTTCTCT +
Preference number: 5 (lower is better)
Translates to: PYPNHGSYLCLMLLSRGMSGSCP*ASGIFS
Trigger: AGAGAAAATCCCACTGGCCAATGGGCATGAGCCAGA...CATACCTCTACTTAATAACATTAAGCACAGGTAAGAGCCGTGGTTAGGATATGG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000064595.15
ENSMUST00000090834.13
ENSMUST00000101562.11
CDS-3UTR CAA 90 bp GTTTTTAGGCTCAGCTACTCCTGGAAATACAGGATCCTGGGTATACAGTTAAATCCCCTCTGCTTGTCCTaGGTGAGGTTTGCAGTATCT +
Preference number: 5 (lower is better)
Translates to: VFRLSYSWKYRILGIQLNPLCLS*VRFAVS
Trigger: AGATACTGCAAACCTCACCAAGGACAAGCAGAGGGG...ATTTAACTGTATACCCAGGATCCTGTATTTCCAGGAGTAGCTGAGCCTAAAAAC
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000050990.10
ENSMUST00000064595.15
ENSMUST00000090834.13
ENSMUST00000101562.11
CDS-3UTR CAA 90 bp ACCAATGTCGGAATTGGGCTAAGGAAAACTAAGAATCCCCCAAATTTGTTTAAGAGTGCTTTCACTCGCTaGGGCTTTGACTTGGTCGCC +
Preference number: 5 (lower is better)
Translates to: TNVGIGLRKTKNPPNLFKSAFTR*GFDLVA
Trigger: GGCGACCAAGTCAAAGCCCAAGCGAGTGAAAGCACT...CTTAAACAAATTTGGGGGATTCTTAGTTTTCCTTAGCCCAATTCCGACATTGGT
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000050990.10
ENSMUST00000064595.15
ENSMUST00000090834.13
ENSMUST00000101562.11
CDS-3UTR CAA 90 bp TGCTTTCCTTTCAGTTGCTTTCTCTTCTCAGTTTGCAAAGAGCGAGTAACAGGAGCCAGCCCAGAGATATaGATTGCCTTCACAGATTTC +
Preference number: 5 (lower is better)
Translates to: CFPFSCFLFSVCKERVTGASPEI*IAFTDF
Trigger: GAAATCTGTGAAGGCAATCAATATCTCTGGGCTGGC...TCCTGTTACTCGCTCTTTGCAAACTGAGAAGAGAAAGCAACTGAAAGGAAAGCA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000064595.15
ENSMUST00000090834.13
ENSMUST00000101562.11
CDS-3UTR CAA 90 bp GACATTCCAGTTTGTCCTGTTTTCCTTGAAAGAAACAAAGAGAGAGCTCTGAGCGCCAGCCCAGAGATATaGATTGCCTTCACAGATTTC +
Preference number: 5 (lower is better)
Translates to: DIPVCPVFLERNKERALSASPEI*IAFTDF
Trigger: GAAATCTGTGAAGGCAATCAATATCTCTGGGCTGGC...GCTCAGAGCTCTCTCTTTGTTTCTTTCAAGGAAAACAGGACAAACTGGAATGTC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000064595.15
ENSMUST00000090834.13
ENSMUST00000101562.11
CDS-3UTR CAA 90 bp CCAAATTTGTTTAAGCTGTTTTTAGGCTCAGCTACTCCTGGAAATACAGGATCCAGTGCCGTCAACTCCTaGGTGAACACAGAGAACTTC +
Preference number: 5 (lower is better)
Translates to: PNLFKLFLGSATPGNTGSSAVNS*VNTENF
Trigger: GAAGTTCTCTGTGTTCACCAAGGAGTTGACGGCACT...GGATCCTGTATTTCCAGGAGTAGCTGAGCCTAAAAACAGCTTAAACAAATTTGG
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000050990.10
ENSMUST00000064595.15
ENSMUST00000090834.13
ENSMUST00000101562.11
CDS-3UTR CAA 90 bp CCATATCCTAACCACGGCTCTTACCTGTGCTTAATGTTATTAAGTAGAGGTATGAGTGCCGTCAACTCCTaGGTGAACACAGAGAACTTC +
Preference number: 5 (lower is better)
Translates to: PYPNHGSYLCLMLLSRGMSAVNS*VNTENF
Trigger: GAAGTTCTCTGTGTTCACCAAGGAGTTGACGGCACT...CATACCTCTACTTAATAACATTAAGCACAGGTAAGAGCCGTGGTTAGGATATGG
44% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000064595.15
ENSMUST00000090834.13
ENSMUST00000101562.11
CDS-3UTR CAA 90 bp GTTTTTAGGCTCAGCTACTCCTGGAAATACAGGATCCTGGGTATACAGTTAAATAGTGCCGTCAACTCCTaGGTGAACACAGAGAACTTC +
Preference number: 5 (lower is better)
Translates to: VFRLSYSWKYRILGIQLNSAVNS*VNTENF
Trigger: GAAGTTCTCTGTGTTCACCAAGGAGTTGACGGCACT...ATTTAACTGTATACCCAGGATCCTGTATTTCCAGGAGTAGCTGAGCCTAAAAAC
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000050990.10
ENSMUST00000064595.15
ENSMUST00000090834.13
ENSMUST00000101562.11
CDS-3UTR CAA 90 bp CTCAAAATAGCATTCTTGGCTGCAGGTCATTCTCCACCTCAGCAGATCACATTACAAAATATCTCGAAGTaGTATCAGCTGTCGCCGTTC +
Preference number: 5 (lower is better)
Translates to: LKIAFLAAGHSPPQQITLQNISK*YQLSPF
Trigger: GAACGGCGACAGCTGATACAACTTCGAGATATTTTG...TAATGTGATCTGCTGAGGTGGAGAATGACCTGCAGCCAAGAATGCTATTTTGAG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000064595.15
ENSMUST00000090834.13
ENSMUST00000101562.11
CDS-3UTR CAA 90 bp CTCAGCTACTCCTGGAAATACAGGATCCTGGGTATACAGTTAAATAGCTTCTCACAAAATATCTCGAAGTaGTATCAGCTGTCGCCGTTC +
Preference number: 5 (lower is better)
Translates to: LSYSWKYRILGIQLNSFSQNISK*YQLSPF
Trigger: GAACGGCGACAGCTGATACAACTTCGAGATATTTTG...TGAGAAGCTATTTAACTGTATACCCAGGATCCTGTATTTCCAGGAGTAGCTGAG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000050990.10
ENSMUST00000064595.15
ENSMUST00000090834.13
ENSMUST00000101562.11
CDS-3UTR CAA 90 bp GTTTTTAGGCTCAGCTACTCCTGGAAATACAGGATCCTGGGTATACAGTTAAATCTCCTTGGTCAGCTCTaGGACGATGTTATTTTCTCC +
Preference number: 5 (lower is better)
Translates to: VFRLSYSWKYRILGIQLNLLGQL*DDVIFS
Trigger: GGAGAAAATAACATCGTCCAAGAGCTGACCAAGGAG...ATTTAACTGTATACCCAGGATCCTGTATTTCCAGGAGTAGCTGAGCCTAAAAAC
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000050990.10
ENSMUST00000064595.15
ENSMUST00000101562.11
CDS-3UTR CAA 90 bp TGCTTTCCTTTCAGTTGCTTTCTCTTCTCAGTTTGCAAAGAGCGAGTAACAGGAACTCCCTTTTTCACCTaGATTTCATTGACCTTCAGC +
Preference number: 5 (lower is better)
Translates to: CFPFSCFLFSVCKERVTGTPFFT*ISLTFS
Trigger: GCTGAAGGTCAATGAAATCAAGGTGAAAAAGGGAGT...TCCTGTTACTCGCTCTTTGCAAACTGAGAAGAGAAAGCAACTGAAAGGAAAGCA
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000064595.15
ENSMUST00000090834.13
ENSMUST00000101562.11
CDS-3UTR CAA 90 bp CTCAGCTACTCCTGGAAATACAGGATCCTGGGTATACAGTTAAATAGCTTCTCAACTCCCTTTTTCACCTaGATTTCATTGACCTTCAGC +
Preference number: 5 (lower is better)
Translates to: LSYSWKYRILGIQLNSFSTPFFT*ISLTFS
Trigger: GCTGAAGGTCAATGAAATCAAGGTGAAAAAGGGAGT...TGAGAAGCTATTTAACTGTATACCCAGGATCCTGTATTTCCAGGAGTAGCTGAG
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000050990.10
ENSMUST00000064595.15
ENSMUST00000090834.13
ENSMUST00000101562.11
CDS-3UTR CAA 90 bp GTTTTTAGGCTCAGCTACTCCTGGAAATACAGGATCCTGGGTATACAGTTAAATCAAAATATCTCGAAGTaGTATCAGCTGTCGCCGTTC +
Preference number: 5 (lower is better)
Translates to: VFRLSYSWKYRILGIQLNQNISK*YQLSPF
Trigger: GAACGGCGACAGCTGATACAACTTCGAGATATTTTG...ATTTAACTGTATACCCAGGATCCTGTATTTCCAGGAGTAGCTGAGCCTAAAAAC
42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000050990.10
ENSMUST00000064595.15
ENSMUST00000090834.13
ENSMUST00000101562.11
CDS-3UTR CAA 90 bp ACCAATGTCGGAATTGGGCTAAGGAAAACTAAGAATCCCCCAAATTTGTTTAAGCTCCTTGGTCAGCTCTaGGACGATGTTATTTTCTCC +
Preference number: 5 (lower is better)
Translates to: TNVGIGLRKTKNPPNLFKLLGQL*DDVIFS
Trigger: GGAGAAAATAACATCGTCCAAGAGCTGACCAAGGAG...CTTAAACAAATTTGGGGGATTCTTAGTTTTCCTTAGCCCAATTCCGACATTGGT
42% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000050990.10
ENSMUST00000064595.15
ENSMUST00000101562.11
CDS-3UTR CAA 90 bp CCAAATTTGTTTAAGCTGTTTTTAGGCTCAGCTACTCCTGGAAATACAGGATCCTTCACCTTGATTTCATaGACCTTCAGCAGGTACTCA +
Preference number: 5 (lower is better)
Translates to: PNLFKLFLGSATPGNTGSFTLIS*TFSRYS
Trigger: TGAGTACCTGCTGAAGGTCAATGAAATCAAGGTGAA...GGATCCTGTATTTCCAGGAGTAGCTGAGCCTAAAAACAGCTTAAACAAATTTGG
41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000050990.10
ENSMUST00000064595.15
ENSMUST00000090834.13
ENSMUST00000101562.11
CDS-3UTR CAA 90 bp GTTTTTAGGCTCAGCTACTCCTGGAAATACAGGATCCTGGGTATACAGTTAAATACTCCCTTTTTCACCTaGATTTCATTGACCTTCAGC +
Preference number: 5 (lower is better)
Translates to: VFRLSYSWKYRILGIQLNTPFFT*ISLTFS
Trigger: GCTGAAGGTCAATGAAATCAAGGTGAAAAAGGGAGT...ATTTAACTGTATACCCAGGATCCTGTATTTCCAGGAGTAGCTGAGCCTAAAAAC
41% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 4 transcripts:
ENSMUST00000050990.10
ENSMUST00000064595.15
ENSMUST00000090834.13
ENSMUST00000101562.11
CDS-3UTR CAA 90 bp ACCAATGTCGGAATTGGGCTAAGGAAAACTAAGAATCCCCCAAATTTGTTTAAGTTCACCTTGATTTCATaGACCTTCAGCAGGTACTCA +
Preference number: 5 (lower is better)
Translates to: TNVGIGLRKTKNPPNLFKFTLIS*TFSRYS
Trigger: TGAGTACCTGCTGAAGGTCAATGAAATCAAGGTGAA...CTTAAACAAATTTGGGGGATTCTTAGTTTTCCTTAGCCCAATTCCGACATTGGT
40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000050990.10
ENSMUST00000064595.15
ENSMUST00000090834.13
ENSMUST00000101562.11
CDS CCA 72 bp CATTCCGAGGTGGGAGCGGGGGTGCGCTGGTGGTGCTaGGGGGTATTGACTGGGAGGAGGGCGGGCTGCCAC +
Preference number: 6 (lower is better)
Translates to: HSEVGAGVRWWC*GVLTGRRAGCH
Trigger: GTGGCAGCCCGCCCTCCTCCCAGTCAATACCCCCCAGCACCACCAGCGCACCCCCGCTCCCACCTCGGAATG
71% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 4 transcripts:
ENSMUST00000050990.10
ENSMUST00000064595.15
ENSMUST00000090834.13
ENSMUST00000101562.11
CDS CCA 72 bp CAGTCCCGGAAGCTGGTTTCTTCTGAGGCAGGCGGCTaGGTGGCTGAGGTGGCAGGGGCGGGGGCTTGCTCT +
Preference number: 6 (lower is better)
Translates to: QSRKLVSSEAGG*VAEVAGAGACS
Trigger: AGAGCAAGCCCCCGCCCCTGCCACCTCAGCCACCCAGCCGCCTGCCTCAGAAGAAACCAGCTTCCGGGACTG
68% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000050990.10
ENSMUST00000064595.15
ENSMUST00000090834.13
ENSMUST00000101562.11
CDS CCA 72 bp GGCAGGGGCGGGGGCTTGCTCTGTGAGGTCCCAGGTTaGGAGGACTTGCTCGGCTGGTTCATGGCTTCTAGA +
Preference number: 6 (lower is better)
Translates to: GRGGGLLCEVPG*EDLLGWFMASR
Trigger: TCTAGAAGCCATGAACCAGCCGAGCAAGTCCTCCCAACCTGGGACCTCACAGAGCAAGCCCCCGCCCCTGCC
64% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000050990.10
ENSMUST00000064595.15
ENSMUST00000090834.13
ENSMUST00000101562.11
CDS TCA 72 bp CCTCAGGATTGGTCTTCACCTGGCAGGTTAGCAGGTTaGGCTTGGCAGGTGGCCGGTTGGCAGTGCCGTGGG +
Preference number: 6 (lower is better)
Translates to: PQDWSSPGRLAG*AWQVAGWQCRG
Trigger: CCCACGGCACTGCCAACCGGCCACCTGCCAAGCTCAACCTGCTAACCTGCCAGGTGAAGACCAATCCTGAGG
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000050990.10
ENSMUST00000064595.15
ENSMUST00000101562.11
CDS CAA 90 bp CCGAAGCTTCAGGTCCTCTCGGCTGTCCTTTGTTGGTCAGCGGGGTaGGCTTGTCAGTCCCGGAAGCTGGTTTCTTCTGAGGCAGGCGGC +
Preference number: 6 (lower is better)
Translates to: PKLQVLSAVLCWSAG*ACQSRKLVSSEAGG
Trigger: GCCGCCTGCCTCAGAAGAAACCAGCTTCCGGGACTGACAAGCCAACCCCGCTGACCAACAAAGGACAGCCGAGAGGACCTGAAGCTTCGG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000050990.10
ENSMUST00000064595.15
ENSMUST00000090834.13
ENSMUST00000101562.11
CDS CCA 72 bp GACCCGAAGCTTCAGGTCCTCTCGGCTGTCCTTTGTTaGTCAGCGGGGTTGGCTTGTCAGTCCCGGAAGCTG +
Preference number: 6 (lower is better)
Translates to: DPKLQVLSAVLC*SAGLACQSRKL
Trigger: CAGCTTCCGGGACTGACAAGCCAACCCCGCTGACCAACAAAGGACAGCCGAGAGGACCTGAAGCTTCGGGTC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000050990.10
ENSMUST00000064595.15
ENSMUST00000090834.13
ENSMUST00000101562.11
CDS CAA 72 bp GGATTGGTCTTCACCTGGCAGGTTAGCAGGTTGAGCTaGGCAGGTGGCCGGTTGGCAGTGCCGTGGGAGATG +
Preference number: 6 (lower is better)
Translates to: GLVFTWQVSRLS*AGGRLAVPWEM
Trigger: CATCTCCCACGGCACTGCCAACCGGCCACCTGCCAAGCTCAACCTGCTAACCTGCCAGGTGAAGACCAATCC
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000050990.10
ENSMUST00000064595.15
ENSMUST00000101562.11
CDS CAA 72 bp TCCTCAGGATTGGTCTTCACCTGGCAGGTTAGCAGGTaGAGCTTGGCAGGTGGCCGGTTGGCAGTGCCGTGG +
Preference number: 6 (lower is better)
Translates to: SSGLVFTWQVSR*SLAGGRLAVPW
Trigger: CCACGGCACTGCCAACCGGCCACCTGCCAAGCTCAACCTGCTAACCTGCCAGGTGAAGACCAATCCTGAGGA
61% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000050990.10
ENSMUST00000064595.15
ENSMUST00000101562.11
CDS CAA 72 bp GGACCCGAAGCTTCAGGTCCTCTCGGCTGTCCTTTGTaGGTCAGCGGGGTTGGCTTGTCAGTCCCGGAAGCT +
Preference number: 6 (lower is better)
Translates to: GPEASGPLGCPL*VSGVGLSVPEA
Trigger: AGCTTCCGGGACTGACAAGCCAACCCCGCTGACCAACAAAGGACAGCCGAGAGGACCTGAAGCTTCGGGTCC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000050990.10
ENSMUST00000064595.15
ENSMUST00000090834.13
ENSMUST00000101562.11
CDS CAA 90 bp GCGTTGGACAGAGGACCCGAAGCTTCAGGTCCTCTCGGCTGTCCTTaGTTGGTCAGCGGGGTTGGCTTGTCAGTCCCGGAAGCTGGTTTC +
Preference number: 6 (lower is better)
Translates to: ALDRGPEASGPLGCP*LVSGVGLSVPEAGF
Trigger: GAAACCAGCTTCCGGGACTGACAAGCCAACCCCGCTGACCAACAAAGGACAGCCGAGAGGACCTGAAGCTTCGGGTCCTCTGTCCAACGC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000050990.10
ENSMUST00000064595.15
ENSMUST00000090834.13
ENSMUST00000101562.11
CDS TCA 72 bp GTATCAGCTGTCGCCGTTCCTCATCCTGGGCCTGTTTaGTGGTGTGGAGGTCCGTGGAGAGCGTCTCGATGG +
Preference number: 6 (lower is better)
Translates to: VSAVAVPHPGPV*WCGGPWRASRW
Trigger: CCATCGAGACGCTCTCCACGGACCTCCACACCATCAAACAGGCCCAGGATGAGGAACGGCGACAGCTGATAC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000050990.10
ENSMUST00000090834.13
ENSMUST00000101562.11
CDS CCA 72 bp GTATTGACTGGGAGGAGGGCGGGCTGCCACTCAGGATaGCTCCATAGGTCTCATTCTGCAAGATGCTGGGCC +
Preference number: 6 (lower is better)
Translates to: VLTGRRAGCHSG*LHRSHSARCWA
Trigger: GGCCCAGCATCTTGCAGAATGAGACCTATGGAGCCATCCTGAGTGGCAGCCCGCCCTCCTCCCAGTCAATAC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000050990.10
ENSMUST00000064595.15
ENSMUST00000090834.13
ENSMUST00000101562.11
CDS CCA 72 bp TTGGTAGATGTCACTCGAAGAGGGGGCAGCGGTGGGTaGACAGCTGGCAGATCTGACGAAGATCGCTGCCTG +
Preference number: 6 (lower is better)
Translates to: LVDVTRRGGSGG*TAGRSDEDRCL
Trigger: CAGGCAGCGATCTTCGTCAGATCTGCCAGCTGTCCACCCACCGCTGCCCCCTCTTCGAGTGACATCTACCAA
60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000064595.15
CDS CCA 72 bp TGTCGCCGTTCCTCATCCTGGGCCTGTTTGATGGTGTaGAGGTCCGTGGAGAGCGTCTCGATGGAAGGCTTG +
Preference number: 6 (lower is better)
Translates to: CRRSSSWACLMV*RSVESVSMEGL
Trigger: CAAGCCTTCCATCGAGACGCTCTCCACGGACCTCCACACCATCAAACAGGCCCAGGATGAGGAACGGCGACA
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000050990.10
ENSMUST00000090834.13
ENSMUST00000101562.11
CDS CAA 72 bp TGGCAGGTTAGCAGGTTGAGCTTGGCAGGTGGCCGGTaGGCAGTGCCGTGGGAGATGGTGAGGAAGCCATTT +
Preference number: 6 (lower is better)
Translates to: WQVSRLSLAGGR*AVPWEMVRKPF
Trigger: AAATGGCTTCCTCACCATCTCCCACGGCACTGCCAACCGGCCACCTGCCAAGCTCAACCTGCTAACCTGCCA
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000050990.10
ENSMUST00000064595.15
ENSMUST00000101562.11
CDS CAA 72 bp ATCCCAGAGCACTCGATGCAAGTCAGGATGCCCAGGTaGGTAGAGAGCCACGTCGGATCTGGTGCCCCACAG +
Preference number: 6 (lower is better)
Translates to: IPEHSMQVRMPR*VESHVGSGAPQ
Trigger: CTGTGGGGCACCAGATCCGACGTGGCTCTCTACCAACCTGGGCATCCTGACTTGCATCGAGTGCTCTGGGAT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000050990.10
ENSMUST00000064595.15
ENSMUST00000101562.11
CDS CAA 72 bp AGAGGACCCGAAGCTTCAGGTCCTCTCGGCTGTCCTTaGTTGGTCAGCGGGGTTGGCTTGTCAGTCCCGGAA +
Preference number: 6 (lower is better)
Translates to: RGPEASGPLGCP*LVSGVGLSVPE
Trigger: TTCCGGGACTGACAAGCCAACCCCGCTGACCAACAAAGGACAGCCGAGAGGACCTGAAGCTTCGGGTCCTCT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000050990.10
ENSMUST00000064595.15
ENSMUST00000090834.13
ENSMUST00000101562.11
CDS CAA 90 bp TTGGACAGAGGACCCGAAGCTTCAGGTCCTCTCGGCTGTCCTTTGTaGGTCAGCGGGGTTGGCTTGTCAGTCCCGGAAGCTGGTTTCTTC +
Preference number: 6 (lower is better)
Translates to: LDRGPEASGPLGCPL*VSGVGLSVPEAGFF
Trigger: GAAGAAACCAGCTTCCGGGACTGACAAGCCAACCCCGCTGACCAACAAAGGACAGCCGAGAGGACCTGAAGCTTCGGGTCCTCTGTCCAA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000050990.10
ENSMUST00000064595.15
ENSMUST00000090834.13
ENSMUST00000101562.11
CDS GCA 72 bp GGGGCTTGCTCTGTGAGGTCCCAGGTTGGGAGGACTTaGTCGGCTGGTTCATGGCTTCTAGAGTTCCTGATG +
Preference number: 6 (lower is better)
Translates to: GACSVRSQVGRT*SAGSWLLEFLM
Trigger: CATCAGGAACTCTAGAAGCCATGAACCAGCCGAGCAAGTCCTCCCAACCTGGGACCTCACAGAGCAAGCCCC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000050990.10
ENSMUST00000064595.15
ENSMUST00000090834.13
ENSMUST00000101562.11
CDS CCA 72 bp CTGCACACACAGTTGCCACCGAACTTCTCCAGAGCCTaGGTGTACTGTTCCTCGTTCTCCACGTGTGCCAGC +
Preference number: 6 (lower is better)
Translates to: LHTQLPPNFSRA*VYCSSFSTCAS
Trigger: GCTGGCACACGTGGAGAACGAGGAACAGTACACCCAGGCTCTGGAGAAGTTCGGTGGCAACTGTGTGTGCAG
58% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000050990.10
ENSMUST00000064595.15
ENSMUST00000090834.13
ENSMUST00000101562.11
CDS CCA 72 bp AGGTCCTCTCGGCTGTCCTTTGTTGGTCAGCGGGGTTaGCTTGTCAGTCCCGGAAGCTGGTTTCTTCTGAGG +
Preference number: 6 (lower is better)
Translates to: RSSRLSFVGQRG*LVSPGSWFLLR
Trigger: CCTCAGAAGAAACCAGCTTCCGGGACTGACAAGCCAACCCCGCTGACCAACAAAGGACAGCCGAGAGGACCT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000050990.10
ENSMUST00000064595.15
ENSMUST00000090834.13
ENSMUST00000101562.11
CDS CCA 72 bp AGTGCACAAACGATACGGGAAACGCTCCTTTGCGGCTaGGCTCTCCATCGATGTGGCCGATCCACCACTCCT +
Preference number: 6 (lower is better)
Translates to: SAQTIRETLLCG*ALHRCGRSTTP
Trigger: AGGAGTGGTGGATCGGCCACATCGATGGAGAGCCCAGCCGCAAAGGAGCGTTTCCCGTATCGTTTGTGCACT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000050990.10
ENSMUST00000064595.15
ENSMUST00000090834.13
ENSMUST00000101562.11
CDS CAA 72 bp GGGGGCTTGCTCTGTGAGGTCCCAGGTTGGGAGGACTaGCTCGGCTGGTTCATGGCTTCTAGAGTTCCTGAT +
Preference number: 6 (lower is better)
Translates to: GGLLCEVPGWED*LGWFMASRVPD
Trigger: ATCAGGAACTCTAGAAGCCATGAACCAGCCGAGCAAGTCCTCCCAACCTGGGACCTCACAGAGCAAGCCCCC
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000050990.10
ENSMUST00000064595.15
ENSMUST00000090834.13
ENSMUST00000101562.11
CDS CAA 72 bp CAGGTCCTCTCGGCTGTCCTTTGTTGGTCAGCGGGGTaGGCTTGTCAGTCCCGGAAGCTGGTTTCTTCTGAG +
Preference number: 6 (lower is better)
Translates to: QVLSAVLCWSAG*ACQSRKLVSSE
Trigger: CTCAGAAGAAACCAGCTTCCGGGACTGACAAGCCAACCCCGCTGACCAACAAAGGACAGCCGAGAGGACCTG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000050990.10
ENSMUST00000064595.15
ENSMUST00000090834.13
ENSMUST00000101562.11
CDS CAA 72 bp TGTATCAGCTGTCGCCGTTCCTCATCCTGGGCCTGTTaGATGGTGTGGAGGTCCGTGGAGAGCGTCTCGATG +
Preference number: 6 (lower is better)
Translates to: CISCRRSSSWAC*MVWRSVESVSM
Trigger: CATCGAGACGCTCTCCACGGACCTCCACACCATCAAACAGGCCCAGGATGAGGAACGGCGACAGCTGATACA
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000050990.10
ENSMUST00000090834.13
ENSMUST00000101562.11
CDS CAA 90 bp TCTCGAAGTTGTATCAGCTGTCGCCGTTCCTCATCCTGGGCCTGTTaGATGGTGTGGAGGTCCGTGGAGAGCGTCTCGATGGAAGGCTTG +
Preference number: 6 (lower is better)
Translates to: SRSCISCRRSSSWAC*MVWRSVESVSMEGL
Trigger: CAAGCCTTCCATCGAGACGCTCTCCACGGACCTCCACACCATCAAACAGGCCCAGGATGAGGAACGGCGACAGCTGATACAACTTCGAGA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000050990.10
ENSMUST00000090834.13
ENSMUST00000101562.11
CDS GCA 72 bp GGTGGGTGGACAGCTGGCAGATCTGACGAAGATCGCTaGCTGCTGATACCGTCCACACCTACAGAGTTTGTC +
Preference number: 6 (lower is better)
Translates to: GGWTAGRSDEDR*LLIPSTPTEFV
Trigger: GACAAACTCTGTAGGTGTGGACGGTATCAGCAGGCAGCGATCTTCGTCAGATCTGCCAGCTGTCCACCCACC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000064595.15
CDS CCA 72 bp AAAATGTCTCTGGTCTTGACGGCCTCGCAAAGGCTGTaGAGCTTCGCCGCGGTGTCGGCATGCTTTTTCCGT +
Preference number: 6 (lower is better)
Translates to: KMSLVLTASQRL*SFAAVSACFFR
Trigger: ACGGAAAAAGCATGCCGACACCGCGGCGAAGCTCCACAGCCTTTGCGAGGCCGTCAAGACCAGAGACATTTT
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000050990.10
ENSMUST00000064595.15
ENSMUST00000090834.13
ENSMUST00000101562.11
CDS CCA 72 bp TCTCGAAGTTGTATCAGCTGTCGCCGTTCCTCATCCTaGGCCTGTTTGATGGTGTGGAGGTCCGTGGAGAGC +
Preference number: 6 (lower is better)
Translates to: SRSCISCRRSSS*ACLMVWRSVES
Trigger: GCTCTCCACGGACCTCCACACCATCAAACAGGCCCAGGATGAGGAACGGCGACAGCTGATACAACTTCGAGA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000050990.10
ENSMUST00000090834.13
ENSMUST00000101562.11
CDS TCA 72 bp CATAAGCTTGGAGTAACCCAAAAATGTCTCTGGTCTTaGCGGCCTCGCAAAGGCTGTGGAGCTTCGCCGCGG +
Preference number: 6 (lower is better)
Translates to: HKLGVTQKCLWS*RPRKGCGASPR
Trigger: CCGCGGCGAAGCTCCACAGCCTTTGCGAGGCCGTCAAGACCAGAGACATTTTTGGGTTACTCCAAGCTTATG
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000050990.10
ENSMUST00000064595.15
ENSMUST00000090834.13
ENSMUST00000101562.11
CDS GCA 72 bp TCGCAAAGGCTGTGGAGCTTCGCCGCGGTGTCGGCATaGTTTTTCCGTGCATATCTCCTCTCCATGTACTTG +
Preference number: 6 (lower is better)
Translates to: SQRLWSFAAVSA*FFRAYLLSMYL
Trigger: CAAGTACATGGAGAGGAGATATGCACGGAAAAAGCATGCCGACACCGCGGCGAAGCTCCACAGCCTTTGCGA
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000050990.10
ENSMUST00000064595.15
ENSMUST00000090834.13
ENSMUST00000101562.11
CDS GCA 72 bp GTCTCATTCTGCAAGATGCTGGGCCCAAAGCCCCTCTaGTTGTCCTTGGTGAGGTTTGCAGTATCTCTGGCC +
Preference number: 6 (lower is better)
Translates to: VSFCKMLGPKPL*LSLVRFAVSLA
Trigger: GGCCAGAGATACTGCAAACCTCACCAAGGACAAGCAGAGGGGCTTTGGGCCCAGCATCTTGCAGAATGAGAC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000050990.10
ENSMUST00000064595.15
ENSMUST00000090834.13
ENSMUST00000101562.11
CDS CCA 72 bp CTCTGTGAGGTCCCAGGTTGGGAGGACTTGCTCGGCTaGTTCATGGCTTCTAGAGTTCCTGATGTCTTAGCC +
Preference number: 6 (lower is better)
Translates to: LCEVPGWEDLLG*FMASRVPDVLA
Trigger: GGCTAAGACATCAGGAACTCTAGAAGCCATGAACCAGCCGAGCAAGTCCTCCCAACCTGGGACCTCACAGAG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000050990.10
ENSMUST00000064595.15
ENSMUST00000090834.13
ENSMUST00000101562.11
CDS CAA 72 bp GCAAGATGGAGGGCTGTCTCATCTGGCTCATGCCCATaGGCCAGTGGGATTTTCTCTGTCAGGTCCACACCA +
Preference number: 6 (lower is better)
Translates to: ARWRAVSSGSCP*ASGIFSVRSTP
Trigger: TGGTGTGGACCTGACAGAGAAAATCCCACTGGCCAATGGGCATGAGCCAGATGAGACAGCCCTCCATCTTGC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000050990.10
ENSMUST00000064595.15
ENSMUST00000090834.13
ENSMUST00000101562.11
CDS CAA 72 bp GCAATAAAGTGCACAAACGATACGGGAAACGCTCCTTaGCGGCTGGGCTCTCCATCGATGTGGCCGATCCAC +
Preference number: 6 (lower is better)
Translates to: AIKCTNDTGNAP*RLGSPSMWPIH
Trigger: GTGGATCGGCCACATCGATGGAGAGCCCAGCCGCAAAGGAGCGTTTCCCGTATCGTTTGTGCACTTTATTGC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000050990.10
ENSMUST00000064595.15
ENSMUST00000090834.13
ENSMUST00000101562.11
CDS TCA 72 bp CTATCTCAATGGAGGCTTTTCCCCGCAGGAGGAGCTTaGGGCACTCAGCATTGTCTGTCAGGCAGCAGTAGT +
Preference number: 6 (lower is better)
Translates to: LSQWRLFPAGGA*GTQHCLSGSSS
Trigger: ACTACTGCTGCCTGACAGACAATGCTGAGTGCCTCAAGCTCCTCCTGCGGGGAAAAGCCTCCATTGAGATAG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000050990.10
ENSMUST00000064595.15
ENSMUST00000090834.13
ENSMUST00000101562.11
CDS TCA 72 bp AGATGCTGGGCCCAAAGCCCCTCTGCTTGTCCTTGGTaGGGTTTGCAGTATCTCTGGCCAAAGACACAGCAT +
Preference number: 6 (lower is better)
Translates to: RCWAQSPSACPW*GLQYLWPKTQH
Trigger: ATGCTGTGTCTTTGGCCAGAGATACTGCAAACCTCACCAAGGACAAGCAGAGGGGCTTTGGGCCCAGCATCT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000050990.10
ENSMUST00000064595.15
ENSMUST00000090834.13
ENSMUST00000101562.11
CDS TCA 72 bp GGACAGCTGGCAGATCTGACGAAGATCGCTGCCTGCTaGTACCGTCCACACCTACAGAGTTTGTCTTCCACA +
Preference number: 6 (lower is better)
Translates to: GQLADLTKIAAC*YRPHLQSLSST
Trigger: TGTGGAAGACAAACTCTGTAGGTGTGGACGGTATCAGCAGGCAGCGATCTTCGTCAGATCTGCCAGCTGTCC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000064595.15
CDS GCA 72 bp GTGGAGCTTCGCCGCGGTGTCGGCATGCTTTTTCCGTaGATATCTCCTCTCCATGTACTTGGCTGTGATGTA +
Preference number: 6 (lower is better)
Translates to: VELRRGVGMLFP*ISPLHVLGCDV
Trigger: TACATCACAGCCAAGTACATGGAGAGGAGATATGCACGGAAAAAGCATGCCGACACCGCGGCGAAGCTCCAC
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000050990.10
ENSMUST00000064595.15
ENSMUST00000090834.13
ENSMUST00000101562.11
CDS GCA 72 bp TACAATGTGAAGGGAAGTCCGGTCCACAGATCTGACTaGAAGATGGAGGGCTGTCTCATCTGGCTCATGCCC +
Preference number: 6 (lower is better)
Translates to: YNVKGSPVHRSD*KMEGCLIWLMP
Trigger: GGGCATGAGCCAGATGAGACAGCCCTCCATCTTGCAGTCAGATCTGTGGACCGGACTTCCCTTCACATTGTA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000050990.10
ENSMUST00000064595.15
ENSMUST00000090834.13
ENSMUST00000101562.11
CDS CAA 90 bp GTCTCATTCTGCAAGATGCTGGGCCCAAAGCCCCTCTGCTTGTCCTaGGTGAGGTTTGCAGTATCTCTGGCCAAAGACACAGCATTGGAC +
Preference number: 6 (lower is better)
Translates to: VSFCKMLGPKPLCLS*VRFAVSLAKDTALD
Trigger: GTCCAATGCTGTGTCTTTGGCCAGAGATACTGCAAACCTCACCAAGGACAAGCAGAGGGGCTTTGGGCCCAGCATCTTGCAGAATGAGAC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000050990.10
ENSMUST00000064595.15
ENSMUST00000090834.13
ENSMUST00000101562.11
CDS CCA 72 bp AATGATCACGTCGCCCTCAGAGAAAGTCAGCTCGTCTaGGTTGTCAGCCACGCAGTTGTAGAGTGCTTTCAC +
Preference number: 6 (lower is better)
Translates to: NDHVALRESQLV*VVSHAVVECFH
Trigger: GTGAAAGCACTCTACAACTGCGTGGCTGACAACCCAGACGAGCTGACTTTCTCTGAGGGCGACGTGATCATT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000050990.10
ENSMUST00000064595.15
ENSMUST00000090834.13
ENSMUST00000101562.11
CDS CAA 72 bp TCATTCTGCAAGATGCTGGGCCCAAAGCCCCTCTGCTaGTCCTTGGTGAGGTTTGCAGTATCTCTGGCCAAA +
Preference number: 6 (lower is better)
Translates to: SFCKMLGPKPLC*SLVRFAVSLAK
Trigger: TTTGGCCAGAGATACTGCAAACCTCACCAAGGACAAGCAGAGGGGCTTTGGGCCCAGCATCTTGCAGAATGA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000050990.10
ENSMUST00000064595.15
ENSMUST00000090834.13
ENSMUST00000101562.11
CDS CAA 90 bp TTCAGAAACGCGCTTCCTAAGTCTGGATCATCTCTGCACACACAGTaGCCACCGAACTTCTCCAGAGCCTGGGTGTACTGTTCCTCGTTC +
Preference number: 6 (lower is better)
Translates to: FRNALPKSGSSLHTQ*PPNFSRAWVYCSSF
Trigger: GAACGAGGAACAGTACACCCAGGCTCTGGAGAAGTTCGGTGGCAACTGTGTGTGCAGAGATGATCCAGACTTAGGAAGCGCGTTTCTGAA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000050990.10
ENSMUST00000064595.15
ENSMUST00000090834.13
ENSMUST00000101562.11
CDS CAA 90 bp GCCCGTCATCCTCTGCACCTCCGAGATGATCTCCTTGGTCAGCTCTaGGACGATGTTATTTTCTCCAGTGTTGTCATCACCCTTAAAGGC +
Preference number: 6 (lower is better)
Translates to: ARHPLHLRDDLLGQL*DDVIFSSVVITLKG
Trigger: GCCTTTAAGGGTGATGACAACACTGGAGAAAATAACATCGTCCAAGAGCTGACCAAGGAGATCATCTCGGAGGTGCAGAGGATGACGGGC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000050990.10
ENSMUST00000064595.15
ENSMUST00000101562.11
CDS TCA 72 bp AGGTTCCCACTGTTCTGGACCAGGAAGTCTACAATGTaGAGGGAAGTCCGGTCCACAGATCTGACTGCAAGA +
Preference number: 6 (lower is better)
Translates to: RFPLFWTRKSTM*REVRSTDLTAR
Trigger: TCTTGCAGTCAGATCTGTGGACCGGACTTCCCTTCACATTGTAGACTTCCTGGTCCAGAACAGTGGGAACCT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000050990.10
ENSMUST00000064595.15
ENSMUST00000090834.13
ENSMUST00000101562.11
CDS TCA 72 bp CACACCTACAGAGTTTGTCTTCCACAGGGTGTTAGCTaGGGTGGCTGTCTGAACTTTGCCAACATTCCGAGG +
Preference number: 6 (lower is better)
Translates to: HTYRVCLPQGVS*GGCLNFANIPR
Trigger: CCTCGGAATGTTGGCAAAGTTCAGACAGCCACCTCAGCTAACACCCTGTGGAAGACAAACTCTGTAGGTGTG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000064595.15
CDS GCA 72 bp CAGAGCCTGGGTGTACTGTTCCTCGTTCTCCACGTGTaGCAGCCCAGAGATATTGATTGCCTTCACAGATTT +
Preference number: 6 (lower is better)
Translates to: QSLGVLFLVLHV*QPRDIDCLHRF
Trigger: AAATCTGTGAAGGCAATCAATATCTCTGGGCTGGCACACGTGGAGAACGAGGAACAGTACACCCAGGCTCTG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000050990.10
ENSMUST00000064595.15
ENSMUST00000090834.13
ENSMUST00000101562.11
CDS GCA 72 bp ACTTCAGAAACGCGCTTCCTAAGTCTGGATCATCTCTaGACACACAGTTGCCACCGAACTTCTCCAGAGCCT +
Preference number: 6 (lower is better)
Translates to: TSETRFLSLDHL*THSCHRTSPEP
Trigger: AGGCTCTGGAGAAGTTCGGTGGCAACTGTGTGTGCAGAGATGATCCAGACTTAGGAAGCGCGTTTCTGAAGT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000050990.10
ENSMUST00000064595.15
ENSMUST00000090834.13
ENSMUST00000101562.11
CDS CAA 90 bp CACACGTCATTGCCCGTCATCCTCTGCACCTCCGAGATGATCTCCTaGGTCAGCTCTTGGACGATGTTATTTTCTCCAGTGTTGTCATCA +
Preference number: 6 (lower is better)
Translates to: HTSLPVILCTSEMIS*VSSWTMLFSPVLSS
Trigger: TGATGACAACACTGGAGAAAATAACATCGTCCAAGAGCTGACCAAGGAGATCATCTCGGAGGTGCAGAGGATGACGGGCAATGACGTGTG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000050990.10
ENSMUST00000064595.15
ENSMUST00000101562.11
CDS TCA 72 bp ACACGTCATTGCCCGTCATCCTCTGCACCTCCGAGATaGTCTCCTTGGTCAGCTCTTGGACGATGTTATTTT +
Preference number: 6 (lower is better)
Translates to: TRHCPSSSAPPR*SPWSALGRCYF
Trigger: AAAATAACATCGTCCAAGAGCTGACCAAGGAGATCATCTCGGAGGTGCAGAGGATGACGGGCAATGACGTGT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000050990.10
ENSMUST00000064595.15
ENSMUST00000101562.11
CDS CCA 72 bp CTCTGCACCTCCGAGATGATCTCCTTGGTCAGCTCTTaGACGATGTTATTTTCTCCAGTGTTGTCATCACCC +
Preference number: 6 (lower is better)
Translates to: LCTSEMISLVSS*TMLFSPVLSSP
Trigger: GGGTGATGACAACACTGGAGAAAATAACATCGTCCAAGAGCTGACCAAGGAGATCATCTCGGAGGTGCAGAG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000050990.10
ENSMUST00000064595.15
ENSMUST00000101562.11
CDS CAA 72 bp CCTCTGCACCTCCGAGATGATCTCCTTGGTCAGCTCTaGGACGATGTTATTTTCTCCAGTGTTGTCATCACC +
Preference number: 6 (lower is better)
Translates to: PLHLRDDLLGQL*DDVIFSSVVIT
Trigger: GGTGATGACAACACTGGAGAAAATAACATCGTCCAAGAGCTGACCAAGGAGATCATCTCGGAGGTGCAGAGG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000050990.10
ENSMUST00000064595.15
ENSMUST00000101562.11
CDS CAA 72 bp TCCATAATTTCATTAAAGCCTGCATTCCCGATATTCTaGGCAAGAGTGCCGTGGGAGATGGTGAGGAAGCCA +
Preference number: 6 (lower is better)
Translates to: SIISLKPAFPIF*ARVPWEMVRKP
Trigger: TGGCTTCCTCACCATCTCCCACGGCACTCTTGCCAAGAATATCGGGAATGCAGGCTTTAATGAAATTATGGA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000090834.13
CDS CAA 90 bp AGGCAACACTCCATAATTTCATTAAAGCCTGCATTCCCGATATTCTaGGCAAGAGTGCCGTGGGAGATGGTGAGGAAGCCATTTTTAACG +
Preference number: 6 (lower is better)
Translates to: RQHSIISLKPAFPIF*ARVPWEMVRKPFLT
Trigger: CGTTAAAAATGGCTTCCTCACCATCTCCCACGGCACTCTTGCCAAGAATATCGGGAATGCAGGCTTTAATGAAATTATGGAGTGTTGCCT
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000090834.13
CDS TCA 72 bp TCTTCCTTGCTGTTCTGCAGTACAGACATCCATATCTaGCATTCTTGTTCGTCTTCCGCTTGGAAGTGGTAC +
Preference number: 6 (lower is better)
Translates to: SSLLFCSTDIHI*HSCSSSAWKWY
Trigger: GTACCACTTCCAAGCGGAAGACGAACAAGAATGTCAGATATGGATGTCTGTACTGCAGAACAGCAAGGAAGA
46% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000050990.10
ENSMUST00000064595.15
ENSMUST00000101562.11
CDS TCA 72 bp GTCTCTCCTAGACTCTTTCTGTTCCACCTGCAATGCTaGCTTCAAAATATCTCGAAGTTGTATCAGCTGTCG +
Preference number: 6 (lower is better)
Translates to: VSPRLFLFHLQC*LQNISKLYQLS
Trigger: CGACAGCTGATACAACTTCGAGATATTTTGAAGTCAGCATTGCAGGTGGAACAGAAAGAGTCTAGGAGAGAC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000064595.15
ENSMUST00000101562.11
CDS CAA 90 bp AGGCAACACTCCATAATTTCATTAAAGCCTGCATTCCCGATATTCTaGGCAAGCAGAAGCTCAGACGTTCCCAATACATCTAATGTCAGG +
Preference number: 6 (lower is better)
Translates to: RQHSIISLKPAFPIF*ASRSSDVPNTSNVR
Trigger: CCTGACATTAGATGTATTGGGAACGTCTGAGCTTCTGCTTGCCAAGAATATCGGGAATGCAGGCTTTAATGAAATTATGGAGTGTTGCCT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000050990.10
ENSMUST00000064595.15
ENSMUST00000101562.11
CDS CAA 72 bp TCCATAATTTCATTAAAGCCTGCATTCCCGATATTCTaGGCAAGCAGAAGCTCAGACGTTCCCAATACATCT +
Preference number: 6 (lower is better)
Translates to: SIISLKPAFPIF*ASRSSDVPNTS
Trigger: AGATGTATTGGGAACGTCTGAGCTTCTGCTTGCCAAGAATATCGGGAATGCAGGCTTTAATGAAATTATGGA
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000050990.10
ENSMUST00000064595.15
ENSMUST00000101562.11