Pregenerated sensors for ARPC5 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000008475Ensembl transcript IDs: ENSMUST00000077755.11, ENSMUST00000097536.6
Found 53 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR CCA 90 bp | GGCAGCTACCTTATTTCTGATGAAAGTATTTCATCCAGAGGCTGCTaGAGGCCTGTCTCTGACTTGGGACTGTTTCCCCAGGCAGCCTTA | + |
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Preference number: 1 (lower is better) Translates to: GSYLISDESISSRGC*RPVSDLGLFPQAAL Trigger: TAAGGCTGCCTGGGGAAACAGTCCCAAGTCAGAGACAGGCCTCCAGCAGCCTCTGGATGAAATACTTTCATCAGAAATAAGGTAGCTGCC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000077755.11 ENSMUST00000097536.6 |
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| 3UTR CCA 90 bp | ATGAAAGTATTTCATCCAGAGGCTGCTGGAGGCCTGTCTCTGACTTaGGACTGTTTCCCCAGGCAGCCTTATTACCAGAAGGAAATGGGA | + |
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Preference number: 1 (lower is better) Translates to: MKVFHPEAAGGLSLT*DCFPRQPYYQKEMG Trigger: TCCCATTTCCTTCTGGTAATAAGGCTGCCTGGGGAAACAGTCCCAAGTCAGAGACAGGCCTCCAGCAGCCTCTGGATGAAATACTTTCAT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000077755.11 ENSMUST00000097536.6 |
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| 3UTR CCA 90 bp | GGAAAGACAAGCAGGCTGATTCCCTCTCGGCCACGCACATTCAGGTaGTTGGTTTCGGAACTACTTTGTAATAACTTTTTACAAGCACCG | + |
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Preference number: 1 (lower is better) Translates to: GKTSRLIPSRPRTFR*LVSELLCNNFLQAP Trigger: CGGTGCTTGTAAAAAGTTATTACAAAGTAGTTCCGAAACCAACCACCTGAATGTGCGTGGCCGAGAGGGAATCAGCCTGCTTGTCTTTCC 48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000077755.11 ENSMUST00000097536.6 |
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| 3UTR CCA 90 bp | TCCGGACCCTGGGTCACCACAAAGAGATTGAGAGGCCATGAAAGTTaGATGCTAACAGGAAGTAGCACACTTACACTTATAGCATCATCT | + |
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Preference number: 1 (lower is better) Translates to: SGPWVTTKRLRGHES*MLTGSSTLTLIASS Trigger: AGATGATGCTATAAGTGTAAGTGTGCTACTTCCTGTTAGCATCCAACTTTCATGGCCTCTCAATCTCTTTGTGGTGACCCAGGGTCCGGA 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000077755.11 ENSMUST00000097536.6 |
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| 3UTR-3UTR GCA 90 bp | GATGAAAGTATTTCATCCAGAGGCTGCTGGAGGCCTGTCTCTGACTTGGGACTGCCCACAGGGCAGCGGTaGCATTTGGTTGTTTTGGTC | + |
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Preference number: 2 (lower is better) Translates to: DESISSRGCWRPVSDLGLPTGQR*HLVVLV Trigger: GACCAAAACAACCAAATGGCACCGCTGCCCTGTGGG...CAGTCCCAAGTCAGAGACAGGCCTCCAGCAGCCTCTGGATGAAATACTTTCATC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000077755.11 ENSMUST00000097536.6 |
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| 3UTR-3UTR GCA 90 bp | AGGCCTGTCTCTGACTTGGGACTGTTTCCCCAGGCAGCCTTATTACCAGAAGGAGGCTCACCCACTACTTaGCCTGGAAACACATTTTGC | + |
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Preference number: 2 (lower is better) Translates to: RPVSDLGLFPQAALLPEGGSPTT*PGNTFC Trigger: GCAAAATGTGTTTCCAGGGCAAGTAGTGGGTGAGCC...TCCTTCTGGTAATAAGGCTGCCTGGGGAAACAGTCCCAAGTCAGAGACAGGCCT 52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000077755.11 ENSMUST00000097536.6 |
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| 3UTR CAA 90 bp | GATGAAAGTATTTCATCCAGAGGCTGCTGGAGGCCTGTCTCTGACTaGGGACTGTTTCCCCAGGCAGCCTTATTACCAGAAGGAAATGGG | + |
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Preference number: 2 (lower is better) Translates to: DESISSRGCWRPVSD*GLFPQAALLPEGNG Trigger: CCCATTTCCTTCTGGTAATAAGGCTGCCTGGGGAAACAGTCCCAAGTCAGAGACAGGCCTCCAGCAGCCTCTGGATGAAATACTTTCATC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000077755.11 ENSMUST00000097536.6 |
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| 3UTR-3UTR CCA 90 bp | TTTCATCCAGAGGCTGCTGGAGGCCTGTCTCTGACTTGGGACTGTTTCCCCAGGATTACCAGAAGGAAATaGGATGTTTGTGCCAAAGAG | + |
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Preference number: 2 (lower is better) Translates to: FHPEAAGGLSLTWDCFPRITRRK*DVCAKE Trigger: CTCTTTGGCACAAACATCCCATTTCCTTCTGGTAAT...CCTGGGGAAACAGTCCCAAGTCAGAGACAGGCCTCCAGCAGCCTCTGGATGAAA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000077755.11 ENSMUST00000097536.6 |
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| 3UTR-3UTR TCA 90 bp | GGCAGCTACCTTATTTCTGATGAAAGTATTTCATCCAGAGGCTGCTGGAGGCCTCTTCCTGACCAGCAATaGGTTAGGAAACTGGCCTCA | + |
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Preference number: 2 (lower is better) Translates to: GSYLISDESISSRGCWRPLPDQQ*VRKLAS Trigger: TGAGGCCAGTTTCCTAACTCATTGCTGGTCAGGAAG...AGGCCTCCAGCAGCCTCTGGATGAAATACTTTCATCAGAAATAAGGTAGCTGCC 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000077755.11 ENSMUST00000097536.6 |
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| 3UTR-3UTR TCA 90 bp | TCTGCGCTGGTTCTCACCTCAGTCAGTGACTCTGGAGTTGGCATCTTAGGGAAATCACCACAAAGAGATTaGGAGGCCATGAAAGTTGGA | + |
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Preference number: 2 (lower is better) Translates to: SALVLTSVSDSGVGILGKSPQRD*EAMKVG Trigger: TCCAACTTTCATGGCCTCTCAATCTCTTTGTGGTGA...TTTCCCTAAGATGCCAACTCCAGAGTCACTGACTGAGGTGAGAACCAGCGCAGA 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000077755.11 ENSMUST00000097536.6 |
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| 3UTR CAA 90 bp | AAGACAAGCAGGCTGATTCCCTCTCGGCCACGCACATTCAGGTGGTaGGTTTCGGAACTACTTTGTAATAACTTTTTACAAGCACCGGTC | + |
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Preference number: 2 (lower is better) Translates to: KTSRLIPSRPRTFRW*VSELLCNNFLQAPV Trigger: GACCGGTGCTTGTAAAAAGTTATTACAAAGTAGTTCCGAAACCAACCACCTGAATGTGCGTGGCCGAGAGGGAATCAGCCTGCTTGTCTT 48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000077755.11 ENSMUST00000097536.6 |
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| 3UTR-3UTR GCA 90 bp | TCTGCGCTGGTTCTCACCTCAGTCAGTGACTCTGGAGTTGGCATCTTAGGGAAAAGTGTGGTCCAGTTTTaGAATGTTAATAGCTGCCAG | + |
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Preference number: 2 (lower is better) Translates to: SALVLTSVSDSGVGILGKSVVQF*NVNSCQ Trigger: CTGGCAGCTATTAACATTGCAAAACTGGACCACACT...TTTCCCTAAGATGCCAACTCCAGAGTCACTGACTGAGGTGAGAACCAGCGCAGA 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000077755.11 ENSMUST00000097536.6 |
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| 3UTR-3UTR CCA 90 bp | TGGAGGCCTGTCTCTGACTTGGGACTGTTTCCCCAGGCAGCCTTATTACCAGAAGCCATTTGGTTGTTTTaGTCTTTATACCAGCAACTC | + |
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Preference number: 2 (lower is better) Translates to: WRPVSDLGLFPQAALLPEAIWLF*SLYQQL Trigger: GAGTTGCTGGTATAAAGACCAAAACAACCAAATGGC...TTCTGGTAATAAGGCTGCCTGGGGAAACAGTCCCAAGTCAGAGACAGGCCTCCA 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000077755.11 ENSMUST00000097536.6 |
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| 3UTR-3UTR TCA 90 bp | GGCAGCTACCTTATTTCTGATGAAAGTATTTCATCCAGAGGCTGCTGGAGGCCTTCACCACAAAGAGATTaGGAGGCCATGAAAGTTGGA | + |
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Preference number: 2 (lower is better) Translates to: GSYLISDESISSRGCWRPSPQRD*EAMKVG Trigger: TCCAACTTTCATGGCCTCTCAATCTCTTTGTGGTGA...AGGCCTCCAGCAGCCTCTGGATGAAATACTTTCATCAGAAATAAGGTAGCTGCC 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000077755.11 ENSMUST00000097536.6 |
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| 3UTR-3UTR GCA 90 bp | AGGCCTGTCTCTGACTTGGGACTGTTTCCCCAGGCAGCCTTATTACCAGAAGGACCTGGAAACACATTTTaGTTAAATAAGGGAAGTGTG | + |
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Preference number: 2 (lower is better) Translates to: RPVSDLGLFPQAALLPEGPGNTF*LNKGSV Trigger: CACACTTCCCTTATTTAAGCAAAATGTGTTTCCAGG...TCCTTCTGGTAATAAGGCTGCCTGGGGAAACAGTCCCAAGTCAGAGACAGGCCT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000077755.11 ENSMUST00000097536.6 |
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| 3UTR-3UTR CCA 90 bp | GGCAGCTACCTTATTTCTGATGAAAGTATTTCATCCAGAGGCTGCTGGAGGCCTACTTATAGCATCATCTaGAGGCAAGCGGAAAGAAGG | + |
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Preference number: 2 (lower is better) Translates to: GSYLISDESISSRGCWRPTYSII*RQAERR Trigger: CCTTCTTTCCGCTTGCCTCCAGATGATGCTATAAGT...AGGCCTCCAGCAGCCTCTGGATGAAATACTTTCATCAGAAATAAGGTAGCTGCC 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000077755.11 ENSMUST00000097536.6 |
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| 3UTR-3UTR TCA 90 bp | GTTCTCACCTCAGTCAGTGACTCTGGAGTTGGCATCTTAGGGAAAGACAAGCAGTTATTGACATGGTTATaGAAGGGTCAAACATCCCCA | + |
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Preference number: 2 (lower is better) Translates to: VLTSVSDSGVGILGKDKQLLTWL*KGQTSP Trigger: TGGGGATGTTTGACCCTTTCATAACCATGTCAATAA...CTGCTTGTCTTTCCCTAAGATGCCAACTCCAGAGTCACTGACTGAGGTGAGAAC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000077755.11 ENSMUST00000097536.6 |
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| 3UTR-3UTR GCA 90 bp | GGCAGCTACCTTATTTCTGATGAAAGTATTTCATCCAGAGGCTGCTGGAGGCCTAGTGTGGTCCAGTTTTaGAATGTTAATAGCTGCCAG | + |
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Preference number: 2 (lower is better) Translates to: GSYLISDESISSRGCWRPSVVQF*NVNSCQ Trigger: CTGGCAGCTATTAACATTGCAAAACTGGACCACACT...AGGCCTCCAGCAGCCTCTGGATGAAATACTTTCATCAGAAATAAGGTAGCTGCC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000077755.11 ENSMUST00000097536.6 |
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| 3UTR-3UTR CCA 90 bp | GTTCTCACCTCAGTCAGTGACTCTGGAGTTGGCATCTTAGGGAAAGACAAGCAGACCCACTACTTGCCCTaGAAACACATTTTGCTTAAA | + |
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Preference number: 2 (lower is better) Translates to: VLTSVSDSGVGILGKDKQTHYLP*KHILLK Trigger: TTTAAGCAAAATGTGTTTCCAGGGCAAGTAGTGGGT...CTGCTTGTCTTTCCCTAAGATGCCAACTCCAGAGTCACTGACTGAGGTGAGAAC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000077755.11 ENSMUST00000097536.6 |
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| 3UTR-3UTR TCA 90 bp | AAAGTAAAACCCTTAAACCAGGCAACAGAGTTAGAAATTGCACAATCAAACTTGGCAAGAAGGCAAAGCTaGGAGAAACAGATGCTACCC | + |
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Preference number: 2 (lower is better) Translates to: KVKPLNQATELEIAQSNLARRQS*EKQMLP Trigger: GGGTAGCATCTGTTTCTCTCAGCTTTGCCTTCTTGC...CAAGTTTGATTGTGCAATTTCTAACTCTGTTGCCTGGTTTAAGGGTTTTACTTT 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000077755.11 ENSMUST00000097536.6 |
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| 3UTR-3UTR CCA 90 bp | AATGTGATACATATTATTGACATGGTTATGAAAGGGTCAAACATCCCCACTGAGGCCATTTGGTTGTTTTaGTCTTTATACCAGCAACTC | + |
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Preference number: 2 (lower is better) Translates to: NVIHIIDMVMKGSNIPTEAIWLF*SLYQQL Trigger: GAGTTGCTGGTATAAAGACCAAAACAACCAAATGGC...CTCAGTGGGGATGTTTGACCCTTTCATAACCATGTCAATAATATGTATCACATT 38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000077755.11 ENSMUST00000097536.6 |
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| 3UTR CCA 72 bp | TTTCATCCAGAGGCTGCTGGAGGCCTGTCTCTGACTTaGGACTGTTTCCCCAGGCAGCCTTATTACCAGAAG | + |
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Preference number: 3 (lower is better) Translates to: FHPEAAGGLSLT*DCFPRQPYYQK Trigger: CTTCTGGTAATAAGGCTGCCTGGGGAAACAGTCCCAAGTCAGAGACAGGCCTCCAGCAGCCTCTGGATGAAA 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000077755.11 ENSMUST00000097536.6 |
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| 3UTR-3UTR CAA 90 bp | TTTCATCCAGAGGCTGCTGGAGGCCTGTCTCTGACTTGGGACTGTTTCCCCAGGTGCCATTTGGTTGTTTaGGTCTTTATACCAGCAACT | + |
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Preference number: 3 (lower is better) Translates to: FHPEAAGGLSLTWDCFPRCHLVV*VFIPAT Trigger: AGTTGCTGGTATAAAGACCAAAACAACCAAATGGCA...CCTGGGGAAACAGTCCCAAGTCAGAGACAGGCCTCCAGCAGCCTCTGGATGAAA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000077755.11 ENSMUST00000097536.6 |
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| 3UTR-3UTR CAA 90 bp | TGGAGGCCTGTCTCTGACTTGGGACTGTTTCCCCAGGCAGCCTTATTACCAGAAAGCGGTGCCATTTGGTaGTTTTGGTCTTTATACCAG | + |
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Preference number: 3 (lower is better) Translates to: WRPVSDLGLFPQAALLPESGAIW*FWSLYQ Trigger: CTGGTATAAAGACCAAAACAACCAAATGGCACCGCT...TTCTGGTAATAAGGCTGCCTGGGGAAACAGTCCCAAGTCAGAGACAGGCCTCCA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000077755.11 ENSMUST00000097536.6 |
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| 3UTR-3UTR CAA 90 bp | GATGAAAGTATTTCATCCAGAGGCTGCTGGAGGCCTGTCTCTGACTTGGGACTGGTCACCACAAAGAGATaGAGAGGCCATGAAAGTTGG | + |
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Preference number: 3 (lower is better) Translates to: DESISSRGCWRPVSDLGLVTTKR*RGHESW Trigger: CCAACTTTCATGGCCTCTCAATCTCTTTGTGGTGAC...CAGTCCCAAGTCAGAGACAGGCCTCCAGCAGCCTCTGGATGAAATACTTTCATC 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000077755.11 ENSMUST00000097536.6 |
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| 3UTR-3UTR CAA 90 bp | GTCACCACAAAGAGATTGAGAGGCCATGAAAGTTGGATGCTAACAGGAAGTAGCGGGCTCACCCACTACTaGCCCTGGAAACACATTTTG | + |
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Preference number: 3 (lower is better) Translates to: VTTKRLRGHESWMLTGSSGLTHY*PWKHIL Trigger: CAAAATGTGTTTCCAGGGCAAGTAGTGGGTGAGCCC...GCTACTTCCTGTTAGCATCCAACTTTCATGGCCTCTCAATCTCTTTGTGGTGAC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000077755.11 ENSMUST00000097536.6 |
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| 3UTR CCA 72 bp | CTTATTTCTGATGAAAGTATTTCATCCAGAGGCTGCTaGAGGCCTGTCTCTGACTTGGGACTGTTTCCCCAG | + |
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Preference number: 3 (lower is better) Translates to: LISDESISSRGC*RPVSDLGLFPQ Trigger: CTGGGGAAACAGTCCCAAGTCAGAGACAGGCCTCCAGCAGCCTCTGGATGAAATACTTTCATCAGAAATAAG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000077755.11 ENSMUST00000097536.6 |
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| 3UTR-3UTR CAA 90 bp | GAAATCATGGGAAATGTTCCAGTGAACACTTGTGTAATGGCTAAGGCAGCTACCGGGCTCACCCACTACTaGCCCTGGAAACACATTTTG | + |
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Preference number: 3 (lower is better) Translates to: EIMGNVPVNTCVMAKAATGLTHY*PWKHIL Trigger: CAAAATGTGTTTCCAGGGCAAGTAGTGGGTGAGCCC...GGTAGCTGCCTTAGCCATTACACAAGTGTTCACTGGAACATTTCCCATGATTTC 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000077755.11 ENSMUST00000097536.6 |
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| 3UTR-3UTR CAA 90 bp | GTTCTCACCTCAGTCAGTGACTCTGGAGTTGGCATCTTAGGGAAAGACAAGCAGTGCCATTTGGTTGTTTaGGTCTTTATACCAGCAACT | + |
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Preference number: 3 (lower is better) Translates to: VLTSVSDSGVGILGKDKQCHLVV*VFIPAT Trigger: AGTTGCTGGTATAAAGACCAAAACAACCAAATGGCA...CTGCTTGTCTTTCCCTAAGATGCCAACTCCAGAGTCACTGACTGAGGTGAGAAC 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000077755.11 ENSMUST00000097536.6 |
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| 3UTR-3UTR CAA 90 bp | GTCACCACAAAGAGATTGAGAGGCCATGAAAGTTGGATGCTAACAGGAAGTAGCAGCGGTGCCATTTGGTaGTTTTGGTCTTTATACCAG | + |
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Preference number: 3 (lower is better) Translates to: VTTKRLRGHESWMLTGSSSGAIW*FWSLYQ Trigger: CTGGTATAAAGACCAAAACAACCAAATGGCACCGCT...GCTACTTCCTGTTAGCATCCAACTTTCATGGCCTCTCAATCTCTTTGTGGTGAC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000077755.11 ENSMUST00000097536.6 |
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| 3UTR CCA 72 bp | ACTGTTTCCCCAGGCAGCCTTATTACCAGAAGGAAATaGGATGTTTGTGCCAAAGAGGCGCTTATATTGTGT | + |
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Preference number: 3 (lower is better) Translates to: TVSPGSLITRRK*DVCAKEALILC Trigger: ACACAATATAAGCGCCTCTTTGGCACAAACATCCCATTTCCTTCTGGTAATAAGGCTGCCTGGGGAAACAGT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000077755.11 ENSMUST00000097536.6 |
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| 3UTR-3UTR CAA 90 bp | GAAATCATGGGAAATGTTCCAGTGAACACTTGTGTAATGGCTAAGGCAGCTACCAAGGAAATGGGATGTTaGTGCCAAAGAGGCGCTTAT | + |
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Preference number: 3 (lower is better) Translates to: EIMGNVPVNTCVMAKAATKEMGC*CQRGAY Trigger: ATAAGCGCCTCTTTGGCACAAACATCCCATTTCCTT...GGTAGCTGCCTTAGCCATTACACAAGTGTTCACTGGAACATTTCCCATGATTTC 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000077755.11 ENSMUST00000097536.6 |
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| 3UTR CCA 72 bp | TGGGTCACCACAAAGAGATTGAGAGGCCATGAAAGTTaGATGCTAACAGGAAGTAGCACACTTACACTTATA | + |
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Preference number: 3 (lower is better) Translates to: WVTTKRLRGHES*MLTGSSTLTLI Trigger: TATAAGTGTAAGTGTGCTACTTCCTGTTAGCATCCAACTTTCATGGCCTCTCAATCTCTTTGTGGTGACCCA 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000077755.11 ENSMUST00000097536.6 |
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| 3UTR-3UTR CAA 90 bp | AAAGTAAAACCCTTAAACCAGGCAACAGAGTTAGAAATTGCACAATCAAACTTGGGGCAGCGGTGCCATTaGGTTGTTTTGGTCTTTATA | + |
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Preference number: 3 (lower is better) Translates to: KVKPLNQATELEIAQSNLGQRCH*VVLVFI Trigger: TATAAAGACCAAAACAACCAAATGGCACCGCTGCCC...CAAGTTTGATTGTGCAATTTCTAACTCTGTTGCCTGGTTTAAGGGTTTTACTTT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 2 transcripts: ENSMUST00000077755.11 ENSMUST00000097536.6 |
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| CDS-3UTR GCA 90 bp | AGGCCTGTCTCTGACTTGGGACTGTTTCCCCAGGCAGCCTTATTACCAGAAGGAGGAGCAACACAGCACTaGTGTTGTCAGATGGGCTCT | + |
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Preference number: 4 (lower is better) Translates to: RPVSDLGLFPQAALLPEGGATQH*CCQMGS Trigger: AGAGCCCATCTGACAACAGCAGTGCTGTGTTGCTCC...TCCTTCTGGTAATAAGGCTGCCTGGGGAAACAGTCCCAAGTCAGAGACAGGCCT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000077755.11 |
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| CDS-3UTR CCA 90 bp | TGGAGGCCTGTCTCTGACTTGGGACTGTTTCCCCAGGCAGCCTTATTACCAGAACGGTCCTTCACTGCCTaGCTCTTTGTGTTAATAGGG | + |
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Preference number: 4 (lower is better) Translates to: WRPVSDLGLFPQAALLPERSFTA*LFVLIG Trigger: CCCTATTAACACAAAGAGCCAGGCAGTGAAGGACCG...TTCTGGTAATAAGGCTGCCTGGGGAAACAGTCCCAAGTCAGAGACAGGCCTCCA 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000077755.11 |
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| CDS-3UTR GCA 90 bp | TTTCATCCAGAGGCTGCTGGAGGCCTGTCTCTGACTTGGGACTGTTTCCCCAGGGTCCAGAGACTGCACTaGCTTTTCAATATCATTAGC | + |
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Preference number: 4 (lower is better) Translates to: FHPEAAGGLSLTWDCFPRVQRLH*LFNIIS Trigger: GCTAATGATATTGAAAAGGCAGTGCAGTCTCTGGAC...CCTGGGGAAACAGTCCCAAGTCAGAGACAGGCCTCCAGCAGCCTCTGGATGAAA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000077755.11 |
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| CDS-3UTR GCA 90 bp | TACCCACAGGGCAGCGGTGCCATTTGGTTGTTTTGGTCTTTATACCAGCAACTCGCAAGGGCCTTTTCATaGCACTGGAGCAACACAGCA | + |
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Preference number: 4 (lower is better) Translates to: YPQGSGAIWLFWSLYQQLARAFS*HWSNTA Trigger: TGCTGTGTTGCTCCAGTGGCATGAAAAGGCCCTTGC...GAGTTGCTGGTATAAAGACCAAAACAACCAAATGGCACCGCTGCCCTGTGGGTA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000077755.11 |
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| CDS-3UTR CCA 90 bp | GTTCTCACCTCAGTCAGTGACTCTGGAGTTGGCATCTTAGGGAAAGACAAGCAGGCCTTTTCATGCCACTaGAGCAACACAGCACTGCTG | + |
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Preference number: 4 (lower is better) Translates to: VLTSVSDSGVGILGKDKQAFSCH*SNTALL Trigger: CAGCAGTGCTGTGTTGCTCCAGTGGCATGAAAAGGC...CTGCTTGTCTTTCCCTAAGATGCCAACTCCAGAGTCACTGACTGAGGTGAGAAC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000077755.11 |
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| 3UTR CAA 72 bp | ACTCCTTGCTCCGGACCCTGGGTCACCACAAAGAGATaGAGAGGCCATGAAAGTTGGATGCTAACAGGAAGT | + |
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Preference number: 4 (lower is better) Translates to: TPCSGPWVTTKR*RGHESWMLTGS Trigger: ACTTCCTGTTAGCATCCAACTTTCATGGCCTCTCAATCTCTTTGTGGTGACCCAGGGTCCGGAGCAAGGAGT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000077755.11 ENSMUST00000097536.6 |
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| CDS-3UTR GCA 90 bp | GATGAAAGTATTTCATCCAGAGGCTGCTGGAGGCCTGTCTCTGACTTGGGACTGTGCACGGTCCTTCACTaGCTGGCTCTTTGTGTTAAT | + |
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Preference number: 4 (lower is better) Translates to: DESISSRGCWRPVSDLGLCTVLH*LALCVN Trigger: ATTAACACAAAGAGCCAGGCAGTGAAGGACCGTGCA...CAGTCCCAAGTCAGAGACAGGCCTCCAGCAGCCTCTGGATGAAATACTTTCATC 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000077755.11 |
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| CDS-3UTR GCA 90 bp | GTCACCACAAAGAGATTGAGAGGCCATGAAAGTTGGATGCTAACAGGAAGTAGCGCACCTTCAAGACGATaGTGCCTGCACGGTCCTTCA | + |
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Preference number: 4 (lower is better) Translates to: VTTKRLRGHESWMLTGSSAPSRR*CLHGPS Trigger: TGAAGGACCGTGCAGGCAGCATCGTCTTGAAGGTGC...GCTACTTCCTGTTAGCATCCAACTTTCATGGCCTCTCAATCTCTTTGTGGTGAC 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000077755.11 |
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| CDS-3UTR CCA 90 bp | AGATGCTACCCACAGGGCAGCGGTGCCATTTGGTTGTTTTGGTCTTTATACCAGTCAAAACTCGAACAATaGACCCCACTCCTCCAGCAG | + |
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Preference number: 4 (lower is better) Translates to: RCYPQGSGAIWLFWSLYQSKLEQ*TPLLQQ Trigger: CTGCTGGAGGAGTGGGGTCCATTGTTCGAGTTTTGA...CTGGTATAAAGACCAAAACAACCAAATGGCACCGCTGCCCTGTGGGTAGCATCT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 2 transcripts: ENSMUST00000077755.11 ENSMUST00000097536.6 |
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| 3UTR CAA 72 bp | AACAGATGCTACCCACAGGGCAGCGGTGCCATTTGGTaGTTTTGGTCTTTATACCAGCAACTCCCACTTCTG | + |
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Preference number: 4 (lower is better) Translates to: NRCYPQGSGAIW*FWSLYQQLPLL Trigger: CAGAAGTGGGAGTTGCTGGTATAAAGACCAAAACAACCAAATGGCACCGCTGCCCTGTGGGTAGCATCTGTT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000077755.11 ENSMUST00000097536.6 |
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| 3UTR CAA 72 bp | AGGCTGATTCCCTCTCGGCCACGCACATTCAGGTGGTaGGTTTCGGAACTACTTTGTAATAACTTTTTACAA | + |
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Preference number: 4 (lower is better) Translates to: RLIPSRPRTFRW*VSELLCNNFLQ Trigger: TTGTAAAAAGTTATTACAAAGTAGTTCCGAAACCAACCACCTGAATGTGCGTGGCCGAGAGGGAATCAGCCT 44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000077755.11 ENSMUST00000097536.6 |
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| CDS-3UTR CCA 90 bp | AAAGTAAAACCCTTAAACCAGGCAACAGAGTTAGAAATTGCACAATCAAACTTGTCAAAACTCGAACAATaGACCCCACTCCTCCAGCAG | + |
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Preference number: 4 (lower is better) Translates to: KVKPLNQATELEIAQSNLSKLEQ*TPLLQQ Trigger: CTGCTGGAGGAGTGGGGTCCATTGTTCGAGTTTTGA...CAAGTTTGATTGTGCAATTTCTAACTCTGTTGCCTGGTTTAAGGGTTTTACTTT 41% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 2 transcripts: ENSMUST00000077755.11 ENSMUST00000097536.6 |
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| CDS CCA 90 bp | CCTTGCCGTAGGCACGAGTCCACCTCGCCCTCGTCGGGCCCGGCCTaGCCATCGCCGCCGTCCTCCTCGTCCACGAACTTGTTCTCGTCA | + |
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Preference number: 5 (lower is better) Translates to: PCRRHESTSPSSGPA*PSPPSSSSTNLFSS Trigger: TGACGAGAACAAGTTCGTGGACGAGGAGGACGGCGGCGATGGCCAGGCCGGGCCCGACGAGGGCGAGGTGGACTCGTGCCTACGGCAAGG 69% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000077755.11 ENSMUST00000097536.6 |
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| CDS GCA 90 bp | ACTCGAACAATGGACCCCACTCCTCCAGCAGCAAGGGCCTTTTCATaGCACTGGAGCAACACAGCACTGCTGTTGTCAGATGGGCTCTCA | + |
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Preference number: 5 (lower is better) Translates to: TRTMDPTPPAARAFS*HWSNTALLLSDGLS Trigger: TGAGAGCCCATCTGACAACAGCAGTGCTGTGTTGCTCCAGTGGCATGAAAAGGCCCTTGCTGCTGGAGGAGTGGGGTCCATTGTTCGAGT 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000077755.11 |
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| CDS-3UTR CAA 90 bp | AGGCCTGTCTCTGACTTGGGACTGTTTCCCCAGGCAGCCTTATTACCAGAAGGATCCTCGTCCACGAACTaGTTCTCGTCATATTCGTCC | + |
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Preference number: 5 (lower is better) Translates to: RPVSDLGLFPQAALLPEGSSSTN*FSSYSS Trigger: GGACGAATATGACGAGAACAAGTTCGTGGACGAGGA...TCCTTCTGGTAATAAGGCTGCCTGGGGAAACAGTCCCAAGTCAGAGACAGGCCT 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000077755.11 ENSMUST00000097536.6 |
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| CDS-3UTR CAA 90 bp | AGATGCTACCCACAGGGCAGCGGTGCCATTTGGTTGTTTTGGTCTTTATACCAGTCCTCGTCCACGAACTaGTTCTCGTCATATTCGTCC | + |
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Preference number: 5 (lower is better) Translates to: RCYPQGSGAIWLFWSLYQSSSTN*FSSYSS Trigger: GGACGAATATGACGAGAACAAGTTCGTGGACGAGGA...CTGGTATAAAGACCAAAACAACCAAATGGCACCGCTGCCCTGTGGGTAGCATCT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000077755.11 ENSMUST00000097536.6 |
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| CDS-3UTR CAA 90 bp | GAAATCATGGGAAATGTTCCAGTGAACACTTGTGTAATGGCTAAGGCAGCTACCAACACAGCACTGCTGTaGTCAGATGGGCTCTCAAAG | + |
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Preference number: 5 (lower is better) Translates to: EIMGNVPVNTCVMAKAATNTALL*SDGLSK Trigger: CTTTGAGAGCCCATCTGACAACAGCAGTGCTGTGTT...GGTAGCTGCCTTAGCCATTACACAAGTGTTCACTGGAACATTTCCCATGATTTC 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000077755.11 |
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| CDS CAA 90 bp | TCGGGCCCGGCCTGGCCATCGCCGCCGTCCTCCTCGTCCACGAACTaGTTCTCGTCATATTCGTCCACGTCCACCTTCCGGAAGCGGGCC | + |
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Preference number: 6 (lower is better) Translates to: SGPAWPSPPSSSSTN*FSSYSSTSTFRKRA Trigger: GGCCCGCTTCCGGAAGGTGGACGTGGACGAATATGACGAGAACAAGTTCGTGGACGAGGAGGACGGCGGCGATGGCCAGGCCGGGCCCGA 67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000077755.11 ENSMUST00000097536.6 |
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| CDS CAA 72 bp | GCCTGGCCATCGCCGCCGTCCTCCTCGTCCACGAACTaGTTCTCGTCATATTCGTCCACGTCCACCTTCCGG | + |
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Preference number: 6 (lower is better) Translates to: AWPSPPSSSSTN*FSSYSSTSTFR Trigger: CCGGAAGGTGGACGTGGACGAATATGACGAGAACAAGTTCGTGGACGAGGAGGACGGCGGCGATGGCCAGGC 62% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000077755.11 ENSMUST00000097536.6 |
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