Pregenerated sensors for ARPC4 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000079426Ensembl transcript IDs: ENSMUST00000156898.5, ENSMUST00000171058.8, ENSMUST00000203578.3, ENSMUST00000204802.2
Found 86 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR CCA 90 bp | CCTCTGGACCTGCAGCACAGGCCCTGCACCCAGACGGGCAAACCTTaGGCCTCTCAGCTGGAAGGGGTCGGATGGACACCGGGTGGCCCC | + |
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Preference number: 1 (lower is better) Translates to: PLDLQHRPCTQTGKP*ASQLEGVGWTPGGP Trigger: GGGGCCACCCGGTGTCCATCCGACCCCTTCCAGCTGAGAGGCCCAAGGTTTGCCCGTCTGGGTGCAGGGCCTGTGCTGCAGGTCCAGAGG 69% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000156898.5 ENSMUST00000203578.3 |
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| 3UTR CCA 90 bp | AGCACAGGCCCTGCACCCAGACGGGCAAACCTTGGGCCTCTCAGCTaGAAGGGGTCGGATGGACACCGGGTGGCCCCTACGGCCAGAAGT | + |
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Preference number: 1 (lower is better) Translates to: STGPAPRRANLGPLS*KGSDGHRVAPTARS Trigger: ACTTCTGGCCGTAGGGGCCACCCGGTGTCCATCCGACCCCTTCCAGCTGAGAGGCCCAAGGTTTGCCCGTCTGGGTGCAGGGCCTGTGCT 67% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000156898.5 ENSMUST00000203578.3 |
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| 3UTR TCA 90 bp | CAACCCAGCTTCCGGCTGCTGCTGCTGCACCGCTGCTCCGGGGAGTaGCTCCAGGACACCTTTGCAGACGCAGAGACACAGGGAGGCCGA | + |
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Preference number: 1 (lower is better) Translates to: QPSFRLLLLHRCSGE*LQDTFADAETQGGR Trigger: TCGGCCTCCCTGTGTCTCTGCGTCTGCAAAGGTGTCCTGGAGTCACTCCCCGGAGCAGCGGTGCAGCAGCAGCAGCCGGAAGCTGGGTTG 66% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000156898.5 ENSMUST00000171058.8 ENSMUST00000203578.3 ENSMUST00000204802.2 |
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| 3UTR GCA 90 bp | GCTGCTGCTGCACCGCTGCTCCGGGGAGTGACTCCAGGACACCTTTaGAGACGCAGAGACACAGGGAGGCCGAGGGGAAGGCTGCGAGAT | + |
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Preference number: 1 (lower is better) Translates to: AAAAPLLRGVTPGHL*RRRDTGRPRGRLRD Trigger: ATCTCGCAGCCTTCCCCTCGGCCTCCCTGTGTCTCTGCGTCTGCAAAGGTGTCCTGGAGTCACTCCCCGGAGCAGCGGTGCAGCAGCAGC 66% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 4 transcripts: ENSMUST00000156898.5 ENSMUST00000171058.8 ENSMUST00000203578.3 ENSMUST00000204802.2 |
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| 3UTR GCA 90 bp | ACCTCCCACATCCAATGCCCACCCAACCCAGCTTCCGGCTGCTGCTaGTGCACCGCTGCTCCGGGGAGTGACTCCAGGACACCTTTGCAG | + |
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Preference number: 1 (lower is better) Translates to: TSHIQCPPNPASGCC*CTAAPGSDSRTPLQ Trigger: CTGCAAAGGTGTCCTGGAGTCACTCCCCGGAGCAGCGGTGCAGCAGCAGCAGCCGGAAGCTGGGTTGGGTGGGCATTGGATGTGGGAGGT 64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000156898.5 ENSMUST00000171058.8 ENSMUST00000203578.3 ENSMUST00000204802.2 |
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| 3UTR CCA 90 bp | ACCCAGACGGGCAAACCTTGGGCCTCTCAGCTGGAAGGGGTCGGATaGACACCGGGTGGCCCCTACGGCCAGAAGTTTGCCTGGCTTCTG | + |
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Preference number: 1 (lower is better) Translates to: TQTGKPWASQLEGVG*TPGGPYGQKFAWLL Trigger: CAGAAGCCAGGCAAACTTCTGGCCGTAGGGGCCACCCGGTGTCCATCCGACCCCTTCCAGCTGAGAGGCCCAAGGTTTGCCCGTCTGGGT 64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000156898.5 ENSMUST00000203578.3 |
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| 3UTR TCA 90 bp | GGCTGTAGTGAAGTGCTCCGAGTTGGGGCCCTTGGCCGGGATCGATaGCAAAATTGTCTGGTGGGCTGCTCCAGACCCAAATGCCAGCCA | + |
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Preference number: 1 (lower is better) Translates to: GCSEVLRVGALGRDR*QNCLVGCSRPKCQP Trigger: TGGCTGGCATTTGGGTCTGGAGCAGCCCACCAGACAATTTTGTCATCGATCCCGGCCAAGGGCCCCAACTCGGAGCACTTCACTACAGCC 59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000156898.5 |
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| 3UTR GCA 90 bp | AGAGCAGACACATGTGGCTATGGGGCAGGCCCACTGCTGCCTTTCTaGACAGCTAGCAAGCACACCACACCCACCTCCCACATCCAATGC | + |
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Preference number: 1 (lower is better) Translates to: RADTCGYGAGPLLPF*TASKHTTPTSHIQC Trigger: GCATTGGATGTGGGAGGTGGGTGTGGTGTGCTTGCTAGCTGTGCAGAAAGGCAGCAGTGGGCCTGCCCCATAGCCACATGTGTCTGCTCT 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000156898.5 ENSMUST00000171058.8 ENSMUST00000203578.3 ENSMUST00000204802.2 |
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| 3UTR CCA 90 bp | CTGCCCGGCAATCATAGATTCAGCCCTTGTTCCCAACCAGTGCAGTaGGCATCTTCAGGCAGGACTCAGGAGGCTAGTAGAGGGTCCATA | + |
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Preference number: 1 (lower is better) Translates to: LPGNHRFSPCSQPVQ*ASSGRTQEASRGSI Trigger: TATGGACCCTCTACTAGCCTCCTGAGTCCTGCCTGAAGATGCCCACTGCACTGGTTGGGAACAAGGGCTGAATCTATGATTGCCGGGCAG 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000156898.5 ENSMUST00000203578.3 |
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| 3UTR CAA 90 bp | TGCTGCTGCTGCACCGCTGCTCCGGGGAGTGACTCCAGGACACCTTaGCAGACGCAGAGACACAGGGAGGCCGAGGGGAAGGCTGCGAGA | + |
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Preference number: 2 (lower is better) Translates to: CCCCTAAPGSDSRTP*QTQRHREAEGKAAR Trigger: TCTCGCAGCCTTCCCCTCGGCCTCCCTGTGTCTCTGCGTCTGCAAAGGTGTCCTGGAGTCACTCCCCGGAGCAGCGGTGCAGCAGCAGCA 66% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 4 transcripts: ENSMUST00000156898.5 ENSMUST00000171058.8 ENSMUST00000203578.3 ENSMUST00000204802.2 |
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| 3UTR-3UTR GCA 90 bp | GAGTTCATCAGAATCCGAGACAGCGAGCATGGGAGCAGAGGAGCCCGAGCAGGCGCTTCCGGCTGCTGCTaGTGCACCGCTGCTCCGGGG | + |
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Preference number: 2 (lower is better) Translates to: EFIRIRDSEHGSRGARAGASGCC*CTAAPG Trigger: CCCCGGAGCAGCGGTGCAGCAGCAGCAGCCGGAAGC...GCCTGCTCGGGCTCCTCTGCTCCCATGCTCGCTGTCTCGGATTCTGATGAACTC 66% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000156898.5 ENSMUST00000203578.3 |
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| 3UTR-3UTR GCA 90 bp | GCCCACTGCTGCCTTTCTGCACAGCTAGCAAGCACACCACACCCACCTCCCACAGCTTCCGGCTGCTGCTaGTGCACCGCTGCTCCGGGG | + |
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Preference number: 2 (lower is better) Translates to: AHCCLSAQLASTPHPPPTASGCC*CTAAPG Trigger: CCCCGGAGCAGCGGTGCAGCAGCAGCAGCCGGAAGC...TGTGGGAGGTGGGTGTGGTGTGCTTGCTAGCTGTGCAGAAAGGCAGCAGTGGGC 66% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000156898.5 ENSMUST00000171058.8 ENSMUST00000203578.3 ENSMUST00000204802.2 |
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| 3UTR-3UTR GCA 90 bp | GACGGGCAAACCTTGGGCCTCTCAGCTGGAAGGGGTCGGATGGACACCGGGTGGCTACGGCCAGAAGTTTaGCTGGCTTCTGGGCCCCCG | + |
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Preference number: 2 (lower is better) Translates to: DGQTLGLSAGRGRMDTGWLRPEV*LASGPP Trigger: CGGGGGCCCAGAAGCCAGGCAAACTTCTGGCCGTAG...CCACCCGGTGTCCATCCGACCCCTTCCAGCTGAGAGGCCCAAGGTTTGCCCGTC 66% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000156898.5 ENSMUST00000203578.3 |
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| 3UTR-3UTR GCA 90 bp | GGCTCGGGAAAAATAGTCGCCTTCTGGCTCCAGGCCCGCCCAGACCACAGCGACAACCCAGCTTCCGGCTaGTGCTGCTGCACCGCTGCT | + |
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Preference number: 2 (lower is better) Translates to: GSGKIVAFWLQARPDHSDNPASG*CCCTAA Trigger: AGCAGCGGTGCAGCAGCAGCAGCCGGAAGCTGGGTT...GTCGCTGTGGTCTGGGCGGGCCTGGAGCCAGAAGGCGACTATTTTTCCCGAGCC 64% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000156898.5 ENSMUST00000203578.3 |
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| 3UTR-3UTR CCA 90 bp | GCACAGGCCCTGCACCCAGACGGGCAAACCTTGGGCCTCTCAGCTGGAAGGGGTAAAATAGTCGCCTTCTaGCTCCAGGCCCGCCCAGAC | + |
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Preference number: 2 (lower is better) Translates to: AQALHPDGQTLGLSAGRGKIVAF*LQARPD Trigger: GTCTGGGCGGGCCTGGAGCCAGAAGGCGACTATTTT...ACCCCTTCCAGCTGAGAGGCCCAAGGTTTGCCCGTCTGGGTGCAGGGCCTGTGC 63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000156898.5 ENSMUST00000203578.3 |
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| 3UTR-3UTR GCA 90 bp | CCAATAAGGTACAATCACTGGGGCCAGTCACAGCCACTGGAGCTGGAGGTTGGTGCTTCCGGCTGCTGCTaGTGCACCGCTGCTCCGGGG | + |
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Preference number: 2 (lower is better) Translates to: PIRYNHWGQSQPLELEVGASGCC*CTAAPG Trigger: CCCCGGAGCAGCGGTGCAGCAGCAGCAGCCGGAAGC...ACCAACCTCCAGCTCCAGTGGCTGTGACTGGCCCCAGTGATTGTACCTTATTGG 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000156898.5 ENSMUST00000171058.8 ENSMUST00000203578.3 |
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| 3UTR-3UTR GCA 90 bp | ATAAGGTACAATCACTGGGGCCAGTCACAGCCACTGGAGCTGGAGGTTGGTTTTCCAGCTTCCGGCTGCTaGTGCTGCACCGCTGCTCCG | + |
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Preference number: 2 (lower is better) Translates to: IRYNHWGQSQPLELEVGFPASGC*CCTAAP Trigger: CGGAGCAGCGGTGCAGCAGCAGCAGCCGGAAGCTGG...AAAACCAACCTCCAGCTCCAGTGGCTGTGACTGGCCCCAGTGATTGTACCTTAT 59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000156898.5 ENSMUST00000171058.8 ENSMUST00000203578.3 |
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| 3UTR-3UTR GCA 90 bp | AGTCGCCTTCTGGCTCCAGGCCCGCCCAGACCACAGCGACCAATAAGGTACAATACCTCCCACATCCAATaGCCACCCAACCCAGCTTCC | + |
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Preference number: 2 (lower is better) Translates to: SRLLAPGPPRPQRPIRYNTSHIQ*PPNPAS Trigger: GGAAGCTGGGTTGGGTGGGCATTGGATGTGGGAGGT...ATTGTACCTTATTGGTCGCTGTGGTCTGGGCGGGCCTGGAGCCAGAAGGCGACT 59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000156898.5 ENSMUST00000203578.3 |
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| 3UTR-3UTR GCA 90 bp | CCAGGCCCGCCCAGACCACAGCGACCAATAAGGTACAATCACTGGGGCCAGTCACCACTGCTGCCTTTCTaGACAGCTAGCAAGCACACC | + |
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Preference number: 2 (lower is better) Translates to: PGPPRPQRPIRYNHWGQSPLLPF*TASKHT Trigger: GGTGTGCTTGCTAGCTGTGCAGAAAGGCAGCAGTGG...TGACTGGCCCCAGTGATTGTACCTTATTGGTCGCTGTGGTCTGGGCGGGCCTGG 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000156898.5 ENSMUST00000203578.3 |
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| 3UTR-3UTR CCA 90 bp | ACCCAGACGGGCAAACCTTGGGCCTCTCAGCTGGAAGGGGTCGGATGGACACCGATAAGGTACAATCACTaGGGCCAGTCACAGCCACTG | + |
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Preference number: 2 (lower is better) Translates to: TQTGKPWASQLEGVGWTPIRYNH*GQSQPL Trigger: CAGTGGCTGTGACTGGCCCCAGTGATTGTACCTTAT...CGGTGTCCATCCGACCCCTTCCAGCTGAGAGGCCCAAGGTTTGCCCGTCTGGGT 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000156898.5 ENSMUST00000203578.3 |
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| 3UTR-3UTR GCA 90 bp | CCTTGTTCCCAACCAGTGCAGTGGGCATCTTCAGGCAGGACTCAGGAGGCTAGTACCTCCCACATCCAATaGCCACCCAACCCAGCTTCC | + |
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Preference number: 2 (lower is better) Translates to: PCSQPVQWASSGRTQEASTSHIQ*PPNPAS Trigger: GGAAGCTGGGTTGGGTGGGCATTGGATGTGGGAGGT...ACTAGCCTCCTGAGTCCTGCCTGAAGATGCCCACTGCACTGGTTGGGAACAAGG 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000156898.5 ENSMUST00000203578.3 |
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| 3UTR-3UTR GCA 90 bp | ACGGAAGTTCCCAGCATGTTCAATACCGAGTTACCCCCAACACCTGCTGAGGCAACTCACCTCTGGACCTaGAGCACAGGCCCTGCACCC | + |
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Preference number: 2 (lower is better) Translates to: TEVPSMFNTELPPTPAEATHLWT*STGPAP Trigger: GGGTGCAGGGCCTGTGCTGCAGGTCCAGAGGTGAGT...TGCCTCAGCAGGTGTTGGGGGTAACTCGGTATTGAACATGCTGGGAACTTCCGT 58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000156898.5 |
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| 3UTR-3UTR CCA 90 bp | TCGCCTTCTGGCTCCAGGCCCGCCCAGACCACAGCGACCAATAAGGTACAATCAGCCAGTCACAGCCACTaGAGCTGGAGGTTGGTTTTT | + |
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Preference number: 2 (lower is better) Translates to: SPSGSRPAQTTATNKVQSASHSH*SWRLVF Trigger: AAAAACCAACCTCCAGCTCCAGTGGCTGTGACTGGC...TGATTGTACCTTATTGGTCGCTGTGGTCTGGGCGGGCCTGGAGCCAGAAGGCGA 57% GC, longest homopolymer 5 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000156898.5 ENSMUST00000203578.3 |
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| 3UTR-3UTR GCA 90 bp | AGATTCAGCCCTTGTTCCCAACCAGTGCAGTGGGCATCTTCAGGCAGGACTCAGCCACTGCTGCCTTTCTaGACAGCTAGCAAGCACACC | + |
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Preference number: 2 (lower is better) Translates to: RFSPCSQPVQWASSGRTQPLLPF*TASKHT Trigger: GGTGTGCTTGCTAGCTGTGCAGAAAGGCAGCAGTGG...CTGAGTCCTGCCTGAAGATGCCCACTGCACTGGTTGGGAACAAGGGCTGAATCT 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000156898.5 ENSMUST00000203578.3 |
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| 3UTR-3UTR GCA 90 bp | ATAAGGTACAATCACTGGGGCCAGTCACAGCCACTGGAGCTGGAGGTTGGTTTTACCTCCCACATCCAATaGCCACCCAACCCAGCTTCC | + |
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Preference number: 2 (lower is better) Translates to: IRYNHWGQSQPLELEVGFTSHIQ*PPNPAS Trigger: GGAAGCTGGGTTGGGTGGGCATTGGATGTGGGAGGT...AAAACCAACCTCCAGCTCCAGTGGCTGTGACTGGCCCCAGTGATTGTACCTTAT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000156898.5 ENSMUST00000171058.8 ENSMUST00000203578.3 |
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| 3UTR CAA 90 bp | CAGGTCTCCAAGTATCAGGACACAGCGAGAGAAAGGACTGCTTACTaGAGGAGTGAGCACTATCCAACGGAAGTTCCCAGCATGTTCAAT | + |
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Preference number: 2 (lower is better) Translates to: QVSKYQDTARERTAY*RSEHYPTEVPSMFN Trigger: ATTGAACATGCTGGGAACTTCCGTTGGATAGTGCTCACTCCTCAAGTAAGCAGTCCTTTCTCTCGCTGTGTCCTGATACTTGGAGACCTG 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000156898.5 |
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| 3UTR-3UTR GCA 90 bp | GTGTACTTCCAGTATGGCCTAGAACTCAAAAGTCCTCCTGTCTCCAATTTCCAATGCTCCAGACCCAAATaGCAGCCACAAGGCTCCAAG | + |
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Preference number: 2 (lower is better) Translates to: VYFQYGLELKSPPVSNFQCSRPK*QPQGSK Trigger: CTTGGAGCCTTGTGGCTGGCATTTGGGTCTGGAGCA...TTGGAAATTGGAGACAGGAGGACTTTTGAGTTCTAGGCCATACTGGAAGTACAC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000156898.5 |
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| 3UTR GCA 72 bp | CGGATGGACACCGGGTGGCCCCTACGGCCAGAAGTTTaGCTGGCTTCTGGGCCCCCGCTCCTAGGCCTGCCC | + |
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Preference number: 3 (lower is better) Translates to: RMDTGWPLRPEV*LASGPPLLGLP Trigger: GGGCAGGCCTAGGAGCGGGGGCCCAGAAGCCAGGCAAACTTCTGGCCGTAGGGGCCACCCGGTGTCCATCCG 71% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000156898.5 ENSMUST00000203578.3 |
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| 3UTR GCA 72 bp | GCACCGCTGCTCCGGGGAGTGACTCCAGGACACCTTTaGAGACGCAGAGACACAGGGAGGCCGAGGGGAAGG | + |
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Preference number: 3 (lower is better) Translates to: APLLRGVTPGHL*RRRDTGRPRGR Trigger: CCTTCCCCTCGGCCTCCCTGTGTCTCTGCGTCTGCAAAGGTGTCCTGGAGTCACTCCCCGGAGCAGCGGTGC 67% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 4 transcripts: ENSMUST00000156898.5 ENSMUST00000171058.8 ENSMUST00000203578.3 ENSMUST00000204802.2 |
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| 3UTR CCA 72 bp | CTGCAGCACAGGCCCTGCACCCAGACGGGCAAACCTTaGGCCTCTCAGCTGGAAGGGGTCGGATGGACACCG | + |
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Preference number: 3 (lower is better) Translates to: LQHRPCTQTGKP*ASQLEGVGWTP Trigger: CGGTGTCCATCCGACCCCTTCCAGCTGAGAGGCCCAAGGTTTGCCCGTCTGGGTGCAGGGCCTGTGCTGCAG 67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000156898.5 ENSMUST00000203578.3 |
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| 3UTR CCA 72 bp | GGCAAACCTTGGGCCTCTCAGCTGGAAGGGGTCGGATaGACACCGGGTGGCCCCTACGGCCAGAAGTTTGCC | + |
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Preference number: 3 (lower is better) Translates to: GKPWASQLEGVG*TPGGPYGQKFA Trigger: GGCAAACTTCTGGCCGTAGGGGCCACCCGGTGTCCATCCGACCCCTTCCAGCTGAGAGGCCCAAGGTTTGCC 65% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000156898.5 ENSMUST00000203578.3 |
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| 3UTR-3UTR CAA 90 bp | GAGTTCATCAGAATCCGAGACAGCGAGCATGGGAGCAGAGGAGCCCGAGCAGGCCCAGACGGGCAAACCTaGGGCCTCTCAGCTGGAAGG | + |
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Preference number: 3 (lower is better) Translates to: EFIRIRDSEHGSRGARAGPDGQT*GLSAGR Trigger: CCTTCCAGCTGAGAGGCCCAAGGTTTGCCCGTCTGG...GCCTGCTCGGGCTCCTCTGCTCCCATGCTCGCTGTCTCGGATTCTGATGAACTC 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000156898.5 ENSMUST00000203578.3 |
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| 3UTR GCA 72 bp | ACATGTGGCTATGGGGCAGGCCCACTGCTGCCTTTCTaGACAGCTAGCAAGCACACCACACCCACCTCCCAC | + |
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Preference number: 3 (lower is better) Translates to: TCGYGAGPLLPF*TASKHTTPTSH Trigger: GTGGGAGGTGGGTGTGGTGTGCTTGCTAGCTGTGCAGAAAGGCAGCAGTGGGCCTGCCCCATAGCCACATGT 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000156898.5 ENSMUST00000171058.8 ENSMUST00000203578.3 ENSMUST00000204802.2 |
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| 3UTR-3UTR CAA 90 bp | CCAGGCCCGCCCAGACCACAGCGACCAATAAGGTACAATCACTGGGGCCAGTCAGACTCCAGGACACCTTaGCAGACGCAGAGACACAGG | + |
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Preference number: 3 (lower is better) Translates to: PGPPRPQRPIRYNHWGQSDSRTP*QTQRHR Trigger: CCTGTGTCTCTGCGTCTGCAAAGGTGTCCTGGAGTC...TGACTGGCCCCAGTGATTGTACCTTATTGGTCGCTGTGGTCTGGGCGGGCCTGG 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000156898.5 ENSMUST00000203578.3 |
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| 3UTR CCA 72 bp | CCGCCCAGACCACAGCGACCAATAAGGTACAATCACTaGGGCCAGTCACAGCCACTGGAGCTGGAGGTTGGT | + |
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Preference number: 3 (lower is better) Translates to: PPRPQRPIRYNH*GQSQPLELEVG Trigger: ACCAACCTCCAGCTCCAGTGGCTGTGACTGGCCCCAGTGATTGTACCTTATTGGTCGCTGTGGTCTGGGCGG 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000156898.5 ENSMUST00000203578.3 |
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| 3UTR-3UTR CAA 90 bp | CCGCCCAGACCACAGCGACCAATAAGGTACAATCACTGGGGCCAGTCACAGCCAGACTCCAGGACACCTTaGCAGACGCAGAGACACAGG | + |
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Preference number: 3 (lower is better) Translates to: PPRPQRPIRYNHWGQSQPDSRTP*QTQRHR Trigger: CCTGTGTCTCTGCGTCTGCAAAGGTGTCCTGGAGTC...TGGCTGTGACTGGCCCCAGTGATTGTACCTTATTGGTCGCTGTGGTCTGGGCGG 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000156898.5 ENSMUST00000203578.3 |
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| 3UTR-3UTR CAA 90 bp | CACTGCTGCCTTTCTGCACAGCTAGCAAGCACACCACACCCACCTCCCACATCCGACTCCAGGACACCTTaGCAGACGCAGAGACACAGG | + |
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Preference number: 3 (lower is better) Translates to: HCCLSAQLASTPHPPPTSDSRTP*QTQRHR Trigger: CCTGTGTCTCTGCGTCTGCAAAGGTGTCCTGGAGTC...GGATGTGGGAGGTGGGTGTGGTGTGCTTGCTAGCTGTGCAGAAAGGCAGCAGTG 59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000156898.5 ENSMUST00000171058.8 ENSMUST00000203578.3 ENSMUST00000204802.2 |
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| 3UTR TCA 72 bp | GAAGTGCTCCGAGTTGGGGCCCTTGGCCGGGATCGATaGCAAAATTGTCTGGTGGGCTGCTCCAGACCCAAA | + |
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Preference number: 3 (lower is better) Translates to: EVLRVGALGRDR*QNCLVGCSRPK Trigger: TTTGGGTCTGGAGCAGCCCACCAGACAATTTTGTCATCGATCCCGGCCAAGGGCCCCAACTCGGAGCACTTC 58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000156898.5 |
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| 3UTR-3UTR CAA 90 bp | CCAATAAGGTACAATCACTGGGGCCAGTCACAGCCACTGGAGCTGGAGGTTGGTGACTCCAGGACACCTTaGCAGACGCAGAGACACAGG | + |
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Preference number: 3 (lower is better) Translates to: PIRYNHWGQSQPLELEVGDSRTP*QTQRHR Trigger: CCTGTGTCTCTGCGTCTGCAAAGGTGTCCTGGAGTC...ACCAACCTCCAGCTCCAGTGGCTGTGACTGGCCCCAGTGATTGTACCTTATTGG 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000156898.5 ENSMUST00000171058.8 ENSMUST00000203578.3 |
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| 3UTR GCA 72 bp | CCGGCAATCATAGATTCAGCCCTTGTTCCCAACCAGTaGAGTGGGCATCTTCAGGCAGGACTCAGGAGGCTA | + |
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Preference number: 3 (lower is better) Translates to: PAIIDSALVPNQ*SGHLQAGLRRL Trigger: TAGCCTCCTGAGTCCTGCCTGAAGATGCCCACTGCACTGGTTGGGAACAAGGGCTGAATCTATGATTGCCGG 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000156898.5 ENSMUST00000203578.3 |
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| 3UTR CCA 72 bp | AATCATAGATTCAGCCCTTGTTCCCAACCAGTGCAGTaGGCATCTTCAGGCAGGACTCAGGAGGCTAGTAGA | + |
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Preference number: 3 (lower is better) Translates to: NHRFSPCSQPVQ*ASSGRTQEASR Trigger: TCTACTAGCCTCCTGAGTCCTGCCTGAAGATGCCCACTGCACTGGTTGGGAACAAGGGCTGAATCTATGATT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000156898.5 ENSMUST00000203578.3 |
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| 3UTR CAA 72 bp | CCTGCAGCACAGGCCCTGCACCCAGACGGGCAAACCTaGGGCCTCTCAGCTGGAAGGGGTCGGATGGACACC | + |
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Preference number: 4 (lower is better) Translates to: PAAQALHPDGQT*GLSAGRGRMDT Trigger: GGTGTCCATCCGACCCCTTCCAGCTGAGAGGCCCAAGGTTTGCCCGTCTGGGTGCAGGGCCTGTGCTGCAGG 67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000156898.5 ENSMUST00000203578.3 |
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| 3UTR CAA 72 bp | TGCACCGCTGCTCCGGGGAGTGACTCCAGGACACCTTaGCAGACGCAGAGACACAGGGAGGCCGAGGGGAAG | + |
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Preference number: 4 (lower is better) Translates to: CTAAPGSDSRTP*QTQRHREAEGK Trigger: CTTCCCCTCGGCCTCCCTGTGTCTCTGCGTCTGCAAAGGTGTCCTGGAGTCACTCCCCGGAGCAGCGGTGCA 65% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 4 transcripts: ENSMUST00000156898.5 ENSMUST00000171058.8 ENSMUST00000203578.3 ENSMUST00000204802.2 |
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| CDS-3UTR TCA 90 bp | GCACAGGCCCTGCACCCAGACGGGCAAACCTTGGGCCTCTCAGCTGGAAGGGGTTACGAGCCCGGGCATTaGCCGACAGCTTCATCTCAC | + |
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Preference number: 4 (lower is better) Translates to: AQALHPDGQTLGLSAGRGYEPGH*PTASSH Trigger: GTGAGATGAAGCTGTCGGTCAATGCCCGGGCTCGTA...ACCCCTTCCAGCTGAGAGGCCCAAGGTTTGCCCGTCTGGGTGCAGGGCCTGTGC 63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000156898.5 ENSMUST00000203578.3 |
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| CDS-3UTR TCA 90 bp | GCTGCACCGCTGCTCCGGGGAGTGACTCCAGGACACCTTTGCAGACGCAGAGACTACGAGCCCGGGCATTaGCCGACAGCTTCATCTCAC | + |
|
Preference number: 4 (lower is better) Translates to: AAPLLRGVTPGHLCRRRDYEPGH*PTASSH Trigger: GTGAGATGAAGCTGTCGGTCAATGCCCGGGCTCGTA...GTCTCTGCGTCTGCAAAGGTGTCCTGGAGTCACTCCCCGGAGCAGCGGTGCAGC 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000156898.5 ENSMUST00000171058.8 ENSMUST00000203578.3 ENSMUST00000204802.2 |
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| CDS-3UTR TCA 90 bp | GCAGACGCAGAGACACAGGGAGGCCGAGGGGAAGGCTGCGAGATCCAGCTAGATTACGAGCCCGGGCATTaGCCGACAGCTTCATCTCAC | + |
|
Preference number: 4 (lower is better) Translates to: ADAETQGGRGEGCEIQLDYEPGH*PTASSH Trigger: GTGAGATGAAGCTGTCGGTCAATGCCCGGGCTCGTA...ATCTAGCTGGATCTCGCAGCCTTCCCCTCGGCCTCCCTGTGTCTCTGCGTCTGC 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000156898.5 ENSMUST00000171058.8 ENSMUST00000203578.3 ENSMUST00000204802.2 |
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| 3UTR CAA 72 bp | CCGAGTTGGGGCCCTTGGCCGGGATCGATGACAAAATaGTCTGGTGGGCTGCTCCAGACCCAAATGCCAGCC | + |
|
Preference number: 4 (lower is better) Translates to: PSWGPWPGSMTK*SGGLLQTQMPA Trigger: GGCTGGCATTTGGGTCTGGAGCAGCCCACCAGACAATTTTGTCATCGATCCCGGCCAAGGGCCCCAACTCGG 61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000156898.5 |
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| CDS-3UTR TCA 90 bp | GCCCACTGCTGCCTTTCTGCACAGCTAGCAAGCACACCACACCCACCTCCCACATACGAGCCCGGGCATTaGCCGACAGCTTCATCTCAC | + |
|
Preference number: 4 (lower is better) Translates to: AHCCLSAQLASTPHPPPTYEPGH*PTASSH Trigger: GTGAGATGAAGCTGTCGGTCAATGCCCGGGCTCGTA...TGTGGGAGGTGGGTGTGGTGTGCTTGCTAGCTGTGCAGAAAGGCAGCAGTGGGC 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000156898.5 ENSMUST00000171058.8 ENSMUST00000203578.3 ENSMUST00000204802.2 |
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| CDS-3UTR TCA 90 bp | GCACAGGCCCTGCACCCAGACGGGCAAACCTTGGGCCTCTCAGCTGGAAGGGGTACAGCTTCATCTCACTaGTCTCCTTGTCGATCTCCT | + |
|
Preference number: 4 (lower is better) Translates to: AQALHPDGQTLGLSAGRGTASSH*SPCRSP Trigger: AGGAGATCGACAAGGAGATCAGTGAGATGAAGCTGT...ACCCCTTCCAGCTGAGAGGCCCAAGGTTTGCCCGTCTGGGTGCAGGGCCTGTGC 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000156898.5 ENSMUST00000203578.3 |
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| CDS-3UTR GCA 90 bp | ATAAGGTACAATCACTGGGGCCAGTCACAGCCACTGGAGCTGGAGGTTGGTTTTAGGCAGAGAGCAGCCTaGAGCGTGGCCCGCACGGCA | + |
|
Preference number: 4 (lower is better) Translates to: IRYNHWGQSQPLELEVGFRQRAA*SVARTA Trigger: TGCCGTGCGGGCCACGCTGCAGGCTGCTCTCTGCCT...AAAACCAACCTCCAGCTCCAGTGGCTGTGACTGGCCCCAGTGATTGTACCTTAT 59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000156898.5 |
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| CDS-3UTR TCA 90 bp | TCTGGGCCCCCGCTCCTAGGCCTGCCCGGCAATCATAGATTCAGCCCTTGTTCCGTTCTTTGCTACTCCTaGCTTCGACCTCTGGCTTGT | + |
|
Preference number: 4 (lower is better) Translates to: SGPPLLGLPGNHRFSPCSVLCYS*LRPLAC Trigger: ACAAGCCAGAGGTCGAAGTCAGGAGTAGCAAAGAAC...GGAACAAGGGCTGAATCTATGATTGCCGGGCAGGCCTAGGAGCGGGGGCCCAGA 58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000156898.5 |
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| CDS-3UTR TCA 90 bp | GGCTGCTGCTGCTGCACCGCTGCTCCGGGGAGTGACTCCAGGACACCTTTGCAGTGTCGATCTCCTCCATaGAGTGGATTACAAAGTCCA | + |
|
Preference number: 4 (lower is better) Translates to: GCCCCTAAPGSDSRTPLQCRSPP*SGLQSP Trigger: TGGACTTTGTAATCCACTTCATGGAGGAGATCGACA...CTGCAAAGGTGTCCTGGAGTCACTCCCCGGAGCAGCGGTGCAGCAGCAGCAGCC 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000156898.5 ENSMUST00000171058.8 ENSMUST00000203578.3 ENSMUST00000204802.2 |
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| CDS-3UTR TCA 90 bp | GACGGGCAAACCTTGGGCCTCTCAGCTGGAAGGGGTCGGATGGACACCGGGTGGTGTCGATCTCCTCCATaGAGTGGATTACAAAGTCCA | + |
|
Preference number: 4 (lower is better) Translates to: DGQTLGLSAGRGRMDTGWCRSPP*SGLQSP Trigger: TGGACTTTGTAATCCACTTCATGGAGGAGATCGACA...CCACCCGGTGTCCATCCGACCCCTTCCAGCTGAGAGGCCCAAGGTTTGCCCGTC 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000156898.5 ENSMUST00000203578.3 |
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| CDS-3UTR GCA 90 bp | GGCTGCTGCTGCTGCACCGCTGCTCCGGGGAGTGACTCCAGGACACCTTTGCAGTTGTGTTTGTACATCTaGTCCGTGTGGAAGTTGGTG | + |
|
Preference number: 4 (lower is better) Translates to: GCCCCTAAPGSDSRTPLQLCLYI*SVWKLV Trigger: CACCAACTTCCACACGGAGCAGATGTACAAACACAA...CTGCAAAGGTGTCCTGGAGTCACTCCCCGGAGCAGCGGTGCAGCAGCAGCAGCC 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000156898.5 ENSMUST00000171058.8 ENSMUST00000203578.3 ENSMUST00000204802.2 |
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| CDS-3UTR CCA 90 bp | AGTCGCCTTCTGGCTCCAGGCCCGCCCAGACCACAGCGACCAATAAGGTACAATTGTCGTTCCACGACCTaGGAGGAGAAGTTCTCCAGG | + |
|
Preference number: 4 (lower is better) Translates to: SRLLAPGPPRPQRPIRYNCRSTT*EEKFSR Trigger: CCTGGAGAACTTCTCCTCCCAGGTCGTGGAACGACA...ATTGTACCTTATTGGTCGCTGTGGTCTGGGCGGGCCTGGAGCCAGAAGGCGACT 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000156898.5 |
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| CDS-3UTR CCA 90 bp | CCGCCCAGACCACAGCGACCAATAAGGTACAATCACTGGGGCCAGTCACAGCCACCTGACTTCGACCTCTaGCTTGTTGTGTCGTTCCAC | + |
|
Preference number: 4 (lower is better) Translates to: PPRPQRPIRYNHWGQSQPPDFDL*LVVSFH Trigger: GTGGAACGACACAACAAGCCAGAGGTCGAAGTCAGG...TGGCTGTGACTGGCCCCAGTGATTGTACCTTATTGGTCGCTGTGGTCTGGGCGG 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000156898.5 |
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| CDS-3UTR TCA 90 bp | GCCCACTGCTGCCTTTCTGCACAGCTAGCAAGCACACCACACCCACCTCCCACATGTCGATCTCCTCCATaGAGTGGATTACAAAGTCCA | + |
|
Preference number: 4 (lower is better) Translates to: AHCCLSAQLASTPHPPPTCRSPP*SGLQSP Trigger: TGGACTTTGTAATCCACTTCATGGAGGAGATCGACA...TGTGGGAGGTGGGTGTGGTGTGCTTGCTAGCTGTGCAGAAAGGCAGCAGTGGGC 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000156898.5 ENSMUST00000171058.8 ENSMUST00000203578.3 ENSMUST00000204802.2 |
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| CDS-3UTR GCA 90 bp | GAGCATCAGAAACTAGCCAGAGCAGACACATGTGGCTATGGGGCAGGCCCACTGTTGTGTTTGTACATCTaGTCCGTGTGGAAGTTGGTG | + |
|
Preference number: 4 (lower is better) Translates to: EHQKLARADTCGYGAGPLLCLYI*SVWKLV Trigger: CACCAACTTCCACACGGAGCAGATGTACAAACACAA...CAGTGGGCCTGCCCCATAGCCACATGTGTCTGCTCTGGCTAGTTTCTGATGCTC 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000156898.5 ENSMUST00000171058.8 ENSMUST00000203578.3 ENSMUST00000204802.2 |
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| CDS-3UTR GCA 90 bp | CCAATAAGGTACAATCACTGGGGCCAGTCACAGCCACTGGAGCTGGAGGTTGGTTTGTGTTTGTACATCTaGTCCGTGTGGAAGTTGGTG | + |
|
Preference number: 4 (lower is better) Translates to: PIRYNHWGQSQPLELEVGLCLYI*SVWKLV Trigger: CACCAACTTCCACACGGAGCAGATGTACAAACACAA...ACCAACCTCCAGCTCCAGTGGCTGTGACTGGCCCCAGTGATTGTACCTTATTGG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000156898.5 ENSMUST00000171058.8 ENSMUST00000203578.3 |
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| CDS-3UTR GCA 90 bp | ATAAGGTACAATCACTGGGGCCAGTCACAGCCACTGGAGCTGGAGGTTGGTTTTTTGTGTTTGTACATCTaGTCCGTGTGGAAGTTGGTG | + |
|
Preference number: 4 (lower is better) Translates to: IRYNHWGQSQPLELEVGFLCLYI*SVWKLV Trigger: CACCAACTTCCACACGGAGCAGATGTACAAACACAA...AAAACCAACCTCCAGCTCCAGTGGCTGTGACTGGCCCCAGTGATTGTACCTTAT 49% GC, longest homopolymer 6 nt, total homopolymer stretches 10 nt. Matches the following 3 transcripts: ENSMUST00000156898.5 ENSMUST00000171058.8 ENSMUST00000203578.3 |
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| CDS-3UTR CAA 90 bp | AGCACAGGCCCTGCACCCAGACGGGCAAACCTTGGGCCTCTCAGCTGGAAGGGGATACGAGCCCGGGCATaGACCGACAGCTTCATCTCA | + |
|
Preference number: 5 (lower is better) Translates to: STGPAPRRANLGPLSWKGIRARA*TDSFIS Trigger: TGAGATGAAGCTGTCGGTCAATGCCCGGGCTCGTAT...CCCCTTCCAGCTGAGAGGCCCAAGGTTTGCCCGTCTGGGTGCAGGGCCTGTGCT 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000156898.5 ENSMUST00000203578.3 |
||
| CDS-3UTR CAA 90 bp | TCTGGGCCCCCGCTCCTAGGCCTGCCCGGCAATCATAGATTCAGCCCTTGTTCCACTTCGACCTCTGGCTaGTTGTGTCGTTCCACGACC | + |
|
Preference number: 5 (lower is better) Translates to: SGPPLLGLPGNHRFSPCSTSTSG*LCRSTT Trigger: GGTCGTGGAACGACACAACAAGCCAGAGGTCGAAGT...GGAACAAGGGCTGAATCTATGATTGCCGGGCAGGCCTAGGAGCGGGGGCCCAGA 60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000156898.5 |
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| CDS-3UTR CAA 90 bp | GCAGACGCAGAGACACAGGGAGGCCGAGGGGAAGGCTGCGAGATCCAGCTAGATATACGAGCCCGGGCATaGACCGACAGCTTCATCTCA | + |
|
Preference number: 5 (lower is better) Translates to: ADAETQGGRGEGCEIQLDIRARA*TDSFIS Trigger: TGAGATGAAGCTGTCGGTCAATGCCCGGGCTCGTAT...ATCTAGCTGGATCTCGCAGCCTTCCCCTCGGCCTCCCTGTGTCTCTGCGTCTGC 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000156898.5 ENSMUST00000171058.8 ENSMUST00000203578.3 ENSMUST00000204802.2 |
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| CDS-3UTR CAA 90 bp | GGCCCACTGCTGCCTTTCTGCACAGCTAGCAAGCACACCACACCCACCTCCCACTCCACCAGCTTGTGTTaGTACATCTGCTCCGTGTGG | + |
|
Preference number: 5 (lower is better) Translates to: GPLLPFCTASKHTTPTSHSTSLC*YICSVW Trigger: CCACACGGAGCAGATGTACAAACACAAGCTGGTGGA...GTGGGAGGTGGGTGTGGTGTGCTTGCTAGCTGTGCAGAAAGGCAGCAGTGGGCC 59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000156898.5 ENSMUST00000171058.8 ENSMUST00000203578.3 ENSMUST00000204802.2 |
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| CDS-3UTR CAA 90 bp | AGCACAGGCCCTGCACCCAGACGGGCAAACCTTGGGCCTCTCAGCTGGAAGGGGACAAAGTCCACCAGCTaGTGTTTGTACATCTGCTCC | + |
|
Preference number: 5 (lower is better) Translates to: STGPAPRRANLGPLSWKGTKSTS*CLYICS Trigger: GGAGCAGATGTACAAACACAAGCTGGTGGACTTTGT...CCCCTTCCAGCTGAGAGGCCCAAGGTTTGCCCGTCTGGGTGCAGGGCCTGTGCT 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000156898.5 ENSMUST00000203578.3 |
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| CDS-3UTR CAA 90 bp | GGCTGCTGCTGCTGCACCGCTGCTCCGGGGAGTGACTCCAGGACACCTTTGCAGACAAAGTCCACCAGCTaGTGTTTGTACATCTGCTCC | + |
|
Preference number: 5 (lower is better) Translates to: GCCCCTAAPGSDSRTPLQTKSTS*CLYICS Trigger: GGAGCAGATGTACAAACACAAGCTGGTGGACTTTGT...CTGCAAAGGTGTCCTGGAGTCACTCCCCGGAGCAGCGGTGCAGCAGCAGCAGCC 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000156898.5 ENSMUST00000171058.8 ENSMUST00000203578.3 ENSMUST00000204802.2 |
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| CDS-3UTR CAA 90 bp | CCTTGTTCCCAACCAGTGCAGTGGGCATCTTCAGGCAGGACTCAGGAGGCTAGTTCGACCTCTGGCTTGTaGTGTCGTTCCACGACCTGG | + |
|
Preference number: 5 (lower is better) Translates to: PCSQPVQWASSGRTQEASSTSGL*CRSTTW Trigger: CCAGGTCGTGGAACGACACAACAAGCCAGAGGTCGA...ACTAGCCTCCTGAGTCCTGCCTGAAGATGCCCACTGCACTGGTTGGGAACAAGG 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000156898.5 |
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| CDS-3UTR CAA 90 bp | GCAGACGCAGAGACACAGGGAGGCCGAGGGGAAGGCTGCGAGATCCAGCTAGATTGCTCCGTGTGGAAGTaGGTGATGAGAAAGCTGATG | + |
|
Preference number: 5 (lower is better) Translates to: ADAETQGGRGEGCEIQLDCSVWK*VMRKLM Trigger: CATCAGCTTTCTCATCACCAACTTCCACACGGAGCA...ATCTAGCTGGATCTCGCAGCCTTCCCCTCGGCCTCCCTGTGTCTCTGCGTCTGC 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000156898.5 ENSMUST00000171058.8 ENSMUST00000203578.3 ENSMUST00000204802.2 |
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| CDS-3UTR CAA 90 bp | CCAGGCCCGCCCAGACCACAGCGACCAATAAGGTACAATCACTGGGGCCAGTCATCCACCAGCTTGTGTTaGTACATCTGCTCCGTGTGG | + |
|
Preference number: 5 (lower is better) Translates to: PGPPRPQRPIRYNHWGQSSTSLC*YICSVW Trigger: CCACACGGAGCAGATGTACAAACACAAGCTGGTGGA...TGACTGGCCCCAGTGATTGTACCTTATTGGTCGCTGTGGTCTGGGCGGGCCTGG 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000156898.5 ENSMUST00000203578.3 |
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| CDS-3UTR CAA 90 bp | GCTGCACCGCTGCTCCGGGGAGTGACTCCAGGACACCTTTGCAGACGCAGAGACACAAAGTCCACCAGCTaGTGTTTGTACATCTGCTCC | + |
|
Preference number: 5 (lower is better) Translates to: AAPLLRGVTPGHLCRRRDTKSTS*CLYICS Trigger: GGAGCAGATGTACAAACACAAGCTGGTGGACTTTGT...GTCTCTGCGTCTGCAAAGGTGTCCTGGAGTCACTCCCCGGAGCAGCGGTGCAGC 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000156898.5 ENSMUST00000171058.8 ENSMUST00000203578.3 ENSMUST00000204802.2 |
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| CDS-3UTR CAA 90 bp | GCTGCTGCTGCTGCACCGCTGCTCCGGGGAGTGACTCCAGGACACCTTTGCAGAACAAAGTCCACCAGCTaGTGTTTGTACATCTGCTCC | + |
|
Preference number: 5 (lower is better) Translates to: AAAAAPLLRGVTPGHLCRTKSTS*CLYICS Trigger: GGAGCAGATGTACAAACACAAGCTGGTGGACTTTGT...TCTGCAAAGGTGTCCTGGAGTCACTCCCCGGAGCAGCGGTGCAGCAGCAGCAGC 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000156898.5 ENSMUST00000171058.8 ENSMUST00000203578.3 ENSMUST00000204802.2 |
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| CDS-3UTR CAA 90 bp | CACTGCTGCCTTTCTGCACAGCTAGCAAGCACACCACACCCACCTCCCACATCCATACGAGCCCGGGCATaGACCGACAGCTTCATCTCA | + |
|
Preference number: 5 (lower is better) Translates to: HCCLSAQLASTPHPPPTSIRARA*TDSFIS Trigger: TGAGATGAAGCTGTCGGTCAATGCCCGGGCTCGTAT...GGATGTGGGAGGTGGGTGTGGTGTGCTTGCTAGCTGTGCAGAAAGGCAGCAGTG 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000156898.5 ENSMUST00000171058.8 ENSMUST00000203578.3 ENSMUST00000204802.2 |
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| CDS-3UTR CAA 90 bp | CACTGCTGCCTTTCTGCACAGCTAGCAAGCACACCACACCCACCTCCCACATCCTCCACCAGCTTGTGTTaGTACATCTGCTCCGTGTGG | + |
|
Preference number: 5 (lower is better) Translates to: HCCLSAQLASTPHPPPTSSTSLC*YICSVW Trigger: CCACACGGAGCAGATGTACAAACACAAGCTGGTGGA...GGATGTGGGAGGTGGGTGTGGTGTGCTTGCTAGCTGTGCAGAAAGGCAGCAGTG 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000156898.5 ENSMUST00000171058.8 ENSMUST00000203578.3 ENSMUST00000204802.2 |
||
| CDS-3UTR CAA 90 bp | CAGACACATGTGGCTATGGGGCAGGCCCACTGCTGCCTTTCTGCACAGCTAGCATCCACCAGCTTGTGTTaGTACATCTGCTCCGTGTGG | + |
|
Preference number: 5 (lower is better) Translates to: QTHVAMGQAHCCLSAQLASTSLC*YICSVW Trigger: CCACACGGAGCAGATGTACAAACACAAGCTGGTGGA...TGCTAGCTGTGCAGAAAGGCAGCAGTGGGCCTGCCCCATAGCCACATGTGTCTG 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000156898.5 ENSMUST00000171058.8 ENSMUST00000203578.3 ENSMUST00000204802.2 |
||
| CDS-3UTR CAA 90 bp | CCGCCCAGACCACAGCGACCAATAAGGTACAATCACTGGGGCCAGTCACAGCCACTGACCCGGACAGAGTaGATGGAGCCTTCAATAAGA | + |
|
Preference number: 5 (lower is better) Translates to: PPRPQRPIRYNHWGQSQPLTRTE*MEPSIR Trigger: TCTTATTGAAGGCTCCATCAACTCTGTCCGGGTCAG...TGGCTGTGACTGGCCCCAGTGATTGTACCTTATTGGTCGCTGTGGTCTGGGCGG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000156898.5 |
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| CDS-3UTR CAA 90 bp | CACACAGAGCACAGACCTCATGCAGCCCCGAAGGGGCAGGAAGAGACTTTAATTATACGAGCCCGGGCATaGACCGACAGCTTCATCTCA | + |
|
Preference number: 5 (lower is better) Translates to: HTEHRPHAAPKGQEETLIIRARA*TDSFIS Trigger: TGAGATGAAGCTGTCGGTCAATGCCCGGGCTCGTAT...AATTAAAGTCTCTTCCTGCCCCTTCGGGGCTGCATGAGGTCTGTGCTCTGTGTG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000156898.5 |
||
| CDS GCA 90 bp | TCCATGAAGTGGATTACAAAGTCCACCAGCTTGTGTTTGTACATCTaGTCCGTGTGGAAGTTGGTGATGAGAAAGCTGATGTCATATCCC | + |
|
Preference number: 5 (lower is better) Translates to: SMKWITKSTSLCLYI*SVWKLVMRKLMSYP Trigger: GGGATATGACATCAGCTTTCTCATCACCAACTTCCACACGGAGCAGATGTACAAACACAAGCTGGTGGACTTTGTAATCCACTTCATGGA 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000156898.5 ENSMUST00000171058.8 ENSMUST00000203578.3 ENSMUST00000204802.2 |
||
| CDS-3UTR CAA 90 bp | GTATGGCCTAGAACTCAAAAGTCCTCCTGTCTCCAATTTCCAAGAGCTAGAATTTGCTCCGTGTGGAAGTaGGTGATGAGAAAGCTGATG | + |
|
Preference number: 5 (lower is better) Translates to: VWPRTQKSSCLQFPRARICSVWK*VMRKLM Trigger: CATCAGCTTTCTCATCACCAACTTCCACACGGAGCA...AATTCTAGCTCTTGGAAATTGGAGACAGGAGGACTTTTGAGTTCTAGGCCATAC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000156898.5 |
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| CDS CCA 72 bp | ACTTCGACCTCTGGCTTGTTGTGTCGTTCCACGACCTaGGAGGAGAAGTTCTCCAGGCAGAGAGCAGCCTGC | + |
|
Preference number: 6 (lower is better) Translates to: TSTSGLLCRSTT*EEKFSRQRAAC Trigger: GCAGGCTGCTCTCTGCCTGGAGAACTTCTCCTCCCAGGTCGTGGAACGACACAACAAGCCAGAGGTCGAAGT 58% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000156898.5 |
||
| CDS CAA 72 bp | TTGAGGAACTCCTCAGCTACGATACGAGCCCGGGCATaGACCGACAGCTTCATCTCACTGATCTCCTTGTCG | + |
|
Preference number: 6 (lower is better) Translates to: LRNSSATIRARA*TDSFISLISLS Trigger: CGACAAGGAGATCAGTGAGATGAAGCTGTCGGTCAATGCCCGGGCTCGTATCGTAGCTGAGGAGTTCCTCAA 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000156898.5 ENSMUST00000171058.8 ENSMUST00000203578.3 ENSMUST00000204802.2 |
||
| CDS CAA 72 bp | AGTTCTTTGCTACTCCTGACTTCGACCTCTGGCTTGTaGTGTCGTTCCACGACCTGGGAGGAGAAGTTCTCC | + |
|
Preference number: 6 (lower is better) Translates to: SSLLLLTSTSGL*CRSTTWEEKFS Trigger: GGAGAACTTCTCCTCCCAGGTCGTGGAACGACACAACAAGCCAGAGGTCGAAGTCAGGAGTAGCAAAGAACT 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000156898.5 |
||
| CDS CAA 72 bp | AGCAGTTCTTTGCTACTCCTGACTTCGACCTCTGGCTaGTTGTGTCGTTCCACGACCTGGGAGGAGAAGTTC | + |
|
Preference number: 6 (lower is better) Translates to: SSSLLLLTSTSG*LCRSTTWEEKF Trigger: GAACTTCTCCTCCCAGGTCGTGGAACGACACAACAAGCCAGAGGTCGAAGTCAGGAGTAGCAAAGAACTGCT 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000156898.5 |
||
| CDS CAA 90 bp | ATACGAGCCCGGGCATTGACCGACAGCTTCATCTCACTGATCTCCTaGTCGATCTCCTCCATGAAGTGGATTACAAAGTCCACCAGCTTG | + |
|
Preference number: 6 (lower is better) Translates to: IRARALTDSFISLIS*SISSMKWITKSTSL Trigger: CAAGCTGGTGGACTTTGTAATCCACTTCATGGAGGAGATCGACAAGGAGATCAGTGAGATGAAGCTGTCGGTCAATGCCCGGGCTCGTAT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000156898.5 ENSMUST00000171058.8 ENSMUST00000203578.3 ENSMUST00000204802.2 |
||
| CDS CAA 72 bp | TCGGCCTGCTTCACAGCAATGCTGACCCGGACAGAGTaGATGGAGCCTTCAATAAGAACCTTTTCCTTCTCA | + |
|
Preference number: 6 (lower is better) Translates to: SACFTAMLTRTE*MEPSIRTFSFS Trigger: TGAGAAGGAAAAGGTTCTTATTGAAGGCTCCATCAACTCTGTCCGGGTCAGCATTGCTGTGAAGCAGGCCGA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000156898.5 |
||
| CDS CAA 90 bp | TCAATTTCATCGGCCTGCTTCACAGCAATGCTGACCCGGACAGAGTaGATGGAGCCTTCAATAAGAACCTTTTCCTTCTCATTCCTGCTG | + |
|
Preference number: 6 (lower is better) Translates to: SISSACFTAMLTRTE*MEPSIRTFSFSFLL Trigger: CAGCAGGAATGAGAAGGAAAAGGTTCTTATTGAAGGCTCCATCAACTCTGTCCGGGTCAGCATTGCTGTGAAGCAGGCCGATGAAATTGA 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000156898.5 |
||
| CDS GCA 72 bp | TGGATTACAAAGTCCACCAGCTTGTGTTTGTACATCTaGTCCGTGTGGAAGTTGGTGATGAGAAAGCTGATG | + |
|
Preference number: 6 (lower is better) Translates to: WITKSTSLCLYI*SVWKLVMRKLM Trigger: CATCAGCTTTCTCATCACCAACTTCCACACGGAGCAGATGTACAAACACAAGCTGGTGGACTTTGTAATCCA 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000156898.5 ENSMUST00000171058.8 ENSMUST00000203578.3 ENSMUST00000204802.2 |
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