Pregenerated sensors for ARPC3 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000029465Ensembl transcript IDs: ENSMUST00000031421.12, ENSMUST00000102525.11, ENSMUST00000111713.2, ENSMUST00000111716.8, ENSMUST00000196969.5
Found 45 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR TCA 90 bp | CTTGACCAAGAGCTTTTCCAGCAAAGACAGGCTCTCTTCTCTCCTTaGTACGGTAGGTATGAACAGACACATCGGCCTGTGTGTCCTATG | + |
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Preference number: 1 (lower is better) Translates to: LDQELFQQRQALFSP*YGRYEQTHRPVCPM Trigger: CATAGGACACACAGGCCGATGTGTCTGTTCATACCTACCGTATCAAGGAGAGAAGAGAGCCTGTCTTTGCTGGAAAAGCTCTTGGTCAAG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000031421.12 ENSMUST00000102525.11 ENSMUST00000111713.2 ENSMUST00000111716.8 |
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| 3UTR TCA 90 bp | AACTGCCAAAAATCGAAATCACCCGACACCCACCCTCCCAATTCTTaGCCAAGAGCTTTTCCAGCAAAGACAGGCTCTCTTCTCTCCTTG | + |
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Preference number: 1 (lower is better) Translates to: NCQKSKSPDTHPPNS*PRAFPAKTGSLLSL Trigger: CAAGGAGAGAAGAGAGCCTGTCTTTGCTGGAAAAGCTCTTGGTCAAGAATTGGGAGGGTGGGTGTCGGGTGATTTCGATTTTTGGCAGTT 49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 3 transcripts: ENSMUST00000102525.11 ENSMUST00000111713.2 ENSMUST00000111716.8 |
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| 3UTR-3UTR TCA 90 bp | CGAAATCACCCGACACCCACCCTCCCAATTCTTGACCAAGAGCTTTTCCAGCAAGCTCTCTTCTCTCCTTaGTACGGTAGGTATGAACAG | + |
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Preference number: 2 (lower is better) Translates to: RNHPTPTLPILDQELFQQALFSP*YGRYEQ Trigger: CTGTTCATACCTACCGTATCAAGGAGAGAAGAGAGC...TTGCTGGAAAAGCTCTTGGTCAAGAATTGGGAGGGTGGGTGTCGGGTGATTTCG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000102525.11 ENSMUST00000111713.2 ENSMUST00000111716.8 |
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| 3UTR-3UTR TCA 90 bp | AATCACCCGACACCCACCCTCCCAATTCTTGACCAAGAGCTTTTCCAGCAAAGAGCTCTCTTCTCTCCTTaGTACGGTAGGTATGAACAG | + |
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Preference number: 2 (lower is better) Translates to: NHPTPTLPILDQELFQQRALFSP*YGRYEQ Trigger: CTGTTCATACCTACCGTATCAAGGAGAGAAGAGAGC...TCTTTGCTGGAAAAGCTCTTGGTCAAGAATTGGGAGGGTGGGTGTCGGGTGATT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000102525.11 ENSMUST00000111713.2 ENSMUST00000111716.8 |
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| 3UTR CAA 90 bp | AAACTGCCAAAAATCGAAATCACCCGACACCCACCCTCCCAATTCTaGACCAAGAGCTTTTCCAGCAAAGACAGGCTCTCTTCTCTCCTT | + |
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Preference number: 2 (lower is better) Translates to: KLPKIEITRHPPSQF*TKSFSSKDRLSSLL Trigger: AAGGAGAGAAGAGAGCCTGTCTTTGCTGGAAAAGCTCTTGGTCAAGAATTGGGAGGGTGGGTGTCGGGTGATTTCGATTTTTGGCAGTTT 48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 3 transcripts: ENSMUST00000102525.11 ENSMUST00000111713.2 ENSMUST00000111716.8 |
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| 3UTR CAA 90 bp | GTGCTGGTGGCCAGGAGCCATTGTTGCTCTTCCTATGATTTTATTTaGGAGACAAGGTCACATTTTGAAGGTGTAGCTGAGCTGAAACTC | + |
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Preference number: 2 (lower is better) Translates to: VLVARSHCCSSYDFI*ETRSHFEGVAELKL Trigger: GAGTTTCAGCTCAGCTACACCTTCAAAATGTGACCTTGTCTCCAAAATAAAATCATAGGAAGAGCAACAATGGCTCCTGGCCACCAGCAC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000196969.5 |
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| 3UTR TCA 72 bp | AAATCGAAATCACCCGACACCCACCCTCCCAATTCTTaGCCAAGAGCTTTTCCAGCAAAGACAGGCTCTCTT | + |
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Preference number: 3 (lower is better) Translates to: KSKSPDTHPPNS*PRAFPAKTGSL Trigger: AAGAGAGCCTGTCTTTGCTGGAAAAGCTCTTGGTCAAGAATTGGGAGGGTGGGTGTCGGGTGATTTCGATTT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000102525.11 ENSMUST00000111713.2 ENSMUST00000111716.8 |
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| CDS-3UTR TCA 90 bp | AAAATCGAAATCACCCGACACCCACCCTCCCAATTCTTGACCAAGAGCTTTTCCGAGGGGCGGGTCCTTTaGACTGGCTTCGGAGGGGCA | + |
|
Preference number: 4 (lower is better) Translates to: KIEITRHPPSQFLTKSFSEGRVL*TGFGGA Trigger: TGCCCCTCCGAAGCCAGTTCAAAGGACCCGCCCCTC...GGAAAAGCTCTTGGTCAAGAATTGGGAGGGTGGGTGTCGGGTGATTTCGATTTT 56% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt. Matches the following 1 transcripts: ENSMUST00000102525.11 |
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| CDS-3UTR GCA 90 bp | CGAAATCACCCGACACCCACCCTCCCAATTCTTGACCAAGAGCTTTTCCAGCAACTCAGTCCGGTCTCTTaGCTCAGCTGCTGGAGGTAC | + |
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Preference number: 4 (lower is better) Translates to: RNHPTPTLPILDQELFQQLSPVS*LSCWRY Trigger: GTACCTCCAGCAGCTGAGGCAAGAGACCGGACTGAG...TTGCTGGAAAAGCTCTTGGTCAAGAATTGGGAGGGTGGGTGTCGGGTGATTTCG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000102525.11 ENSMUST00000111713.2 ENSMUST00000111716.8 |
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| CDS-3UTR TCA 90 bp | TTTTCCAGCAAAGACAGGCTCTCTTCTCTCCTTGATACGGTAGGTATGAACAGAGAGGGGCGGGTCCTTTaGACTGGCTTCGGAGGGGCA | + |
|
Preference number: 4 (lower is better) Translates to: FSSKDRLSSLLDTVGMNREGRVL*TGFGGA Trigger: TGCCCCTCCGAAGCCAGTTCAAAGGACCCGCCCCTC...TCTGTTCATACCTACCGTATCAAGGAGAGAAGAGAGCCTGTCTTTGCTGGAAAA 53% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 2 transcripts: ENSMUST00000031421.12 ENSMUST00000102525.11 |
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| CDS-3UTR GCA 90 bp | AATCACCCGACACCCACCCTCCCAATTCTTGACCAAGAGCTTTTCCAGCAAAGACTCAGTCCGGTCTCTTaGCTCAGCTGCTGGAGGTAC | + |
|
Preference number: 4 (lower is better) Translates to: NHPTPTLPILDQELFQQRLSPVS*LSCWRY Trigger: GTACCTCCAGCAGCTGAGGCAAGAGACCGGACTGAG...TCTTTGCTGGAAAAGCTCTTGGTCAAGAATTGGGAGGGTGGGTGTCGGGTGATT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000102525.11 ENSMUST00000111713.2 ENSMUST00000111716.8 |
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| CDS-3UTR GCA 90 bp | CCAAAAATCGAAATCACCCGACACCCACCCTCCCAATTCTTGACCAAGAGCTTTCTCAGTCCGGTCTCTTaGCTCAGCTGCTGGAGGTAC | + |
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Preference number: 4 (lower is better) Translates to: PKIEITRHPPSQFLTKSFLSPVS*LSCWRY Trigger: GTACCTCCAGCAGCTGAGGCAAGAGACCGGACTGAG...AAAGCTCTTGGTCAAGAATTGGGAGGGTGGGTGTCGGGTGATTTCGATTTTTGG 52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENSMUST00000102525.11 ENSMUST00000111713.2 ENSMUST00000111716.8 |
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| CDS-3UTR CCA 90 bp | GTGACCAAAGTGCTGGTGGCCAGGAGCCATTGTTGCTCTTCCTATGATTTTATTGCGGGTCCTTTGAACTaGCTTCGGAGGGGCAACAGG | + |
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Preference number: 4 (lower is better) Translates to: VTKVLVARSHCCSSYDFIAGPLN*LRRGNR Trigger: CCTGTTGCCCCTCCGAAGCCAGTTCAAAGGACCCGC...AATAAAATCATAGGAAGAGCAACAATGGCTCCTGGCCACCAGCACTTTGGTCAC 52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000196969.5 |
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| CDS-3UTR GCA 90 bp | GTGACCAAAGTGCTGGTGGCCAGGAGCCATTGTTGCTCTTCCTATGATTTTATTCTCAGTCCGGTCTCTTaGCTCAGCTGCTGGAGGTAC | + |
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Preference number: 4 (lower is better) Translates to: VTKVLVARSHCCSSYDFILSPVS*LSCWRY Trigger: GTACCTCCAGCAGCTGAGGCAAGAGACCGGACTGAG...AATAAAATCATAGGAAGAGCAACAATGGCTCCTGGCCACCAGCACTTTGGTCAC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000196969.5 |
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| CDS-3UTR CCA 90 bp | TTTTCCAGCAAAGACAGGCTCTCTTCTCTCCTTGATACGGTAGGTATGAACAGAGCGGGTCCTTTGAACTaGCTTCGGAGGGGCAACAGG | + |
|
Preference number: 4 (lower is better) Translates to: FSSKDRLSSLLDTVGMNRAGPLN*LRRGNR Trigger: CCTGTTGCCCCTCCGAAGCCAGTTCAAAGGACCCGC...TCTGTTCATACCTACCGTATCAAGGAGAGAAGAGAGCCTGTCTTTGCTGGAAAA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000031421.12 ENSMUST00000102525.11 |
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| CDS-3UTR TCA 90 bp | TTTATTTTGGAGACAAGGTCACATTTTGAAGGTGTAGCTGAGCTGAAACTCAGAGAGGGGCGGGTCCTTTaGACTGGCTTCGGAGGGGCA | + |
|
Preference number: 4 (lower is better) Translates to: FILETRSHFEGVAELKLREGRVL*TGFGGA Trigger: TGCCCCTCCGAAGCCAGTTCAAAGGACCCGCCCCTC...TCTGAGTTTCAGCTCAGCTACACCTTCAAAATGTGACCTTGTCTCCAAAATAAA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt. Matches the following 1 transcripts: ENSMUST00000196969.5 |
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| CDS-3UTR TCA 90 bp | AAAATCGAAATCACCCGACACCCACCCTCCCAATTCTTGACCAAGAGCTTTTCCTGGCATAAATGGCGTTaGGAGGAAAGCCAGGCTCTC | + |
|
Preference number: 4 (lower is better) Translates to: KIEITRHPPSQFLTKSFSWHKWR*EESQAL Trigger: GAGAGCCTGGCTTTCCTCTCAACGCCATTTATGCCA...GGAAAAGCTCTTGGTCAAGAATTGGGAGGGTGGGTGTCGGGTGATTTCGATTTT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000102525.11 ENSMUST00000111713.2 ENSMUST00000111716.8 |
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| CDS-3UTR GCA 90 bp | TTTTCCAGCAAAGACAGGCTCTCTTCTCTCCTTGATACGGTAGGTATGAACAGACTCAGTCCGGTCTCTTaGCTCAGCTGCTGGAGGTAC | + |
|
Preference number: 4 (lower is better) Translates to: FSSKDRLSSLLDTVGMNRLSPVS*LSCWRY Trigger: GTACCTCCAGCAGCTGAGGCAAGAGACCGGACTGAG...TCTGTTCATACCTACCGTATCAAGGAGAGAAGAGAGCCTGTCTTTGCTGGAAAA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000031421.12 ENSMUST00000102525.11 ENSMUST00000111713.2 ENSMUST00000111716.8 |
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| CDS-3UTR CCA 90 bp | AATCGAAATCACCCGACACCCACCCTCCCAATTCTTGACCAAGAGCTTTTCCAGTGTTCTGTTTCTCCCTaGAGGACTCAGCTTGAAGGT | + |
|
Preference number: 4 (lower is better) Translates to: NRNHPTPTLPILDQELFQCSVSP*RTQLEG Trigger: ACCTTCAAGCTGAGTCCTCCAGGGAGAAACAGAACA...CTGGAAAAGCTCTTGGTCAAGAATTGGGAGGGTGGGTGTCGGGTGATTTCGATT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000111713.2 ENSMUST00000111716.8 |
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| 3UTR CAA 72 bp | AAAATCGAAATCACCCGACACCCACCCTCCCAATTCTaGACCAAGAGCTTTTCCAGCAAAGACAGGCTCTCT | + |
|
Preference number: 4 (lower is better) Translates to: KIEITRHPPSQF*TKSFSSKDRLS Trigger: AGAGAGCCTGTCTTTGCTGGAAAAGCTCTTGGTCAAGAATTGGGAGGGTGGGTGTCGGGTGATTTCGATTTT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000102525.11 ENSMUST00000111713.2 ENSMUST00000111716.8 |
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| CDS-3UTR TCA 90 bp | TTTTCCAGCAAAGACAGGCTCTCTTCTCTCCTTGATACGGTAGGTATGAACAGATGGCATAAATGGCGTTaGGAGGAAAGCCAGGCTCTC | + |
|
Preference number: 4 (lower is better) Translates to: FSSKDRLSSLLDTVGMNRWHKWR*EESQAL Trigger: GAGAGCCTGGCTTTCCTCTCAACGCCATTTATGCCA...TCTGTTCATACCTACCGTATCAAGGAGAGAAGAGAGCCTGTCTTTGCTGGAAAA 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000031421.12 ENSMUST00000102525.11 ENSMUST00000111713.2 ENSMUST00000111716.8 |
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| CDS-3UTR CCA 90 bp | CGACACCCACCCTCCCAATTCTTGACCAAGAGCTTTTCCAGCAAAGACAGGCTCTTGGAGTTGCACTTTTaGAGTTTCTTTAGACACTCA | + |
|
Preference number: 4 (lower is better) Translates to: RHPPSQFLTKSFSSKDRLLELHF*SFFRHS Trigger: TGAGTGTCTAAAGAAACTCCAAAAGTGCAACTCCAA...GAGCCTGTCTTTGCTGGAAAAGCTCTTGGTCAAGAATTGGGAGGGTGGGTGTCG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000102525.11 ENSMUST00000111713.2 ENSMUST00000111716.8 |
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| CDS-3UTR CCA 90 bp | CCCACCCTCCCAATTCTTGACCAAGAGCTTTTCCAGCAAAGACAGGCTCTCTTCTTGGAGTTGCACTTTTaGAGTTTCTTTAGACACTCA | + |
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Preference number: 4 (lower is better) Translates to: PTLPILDQELFQQRQALFLELHF*SFFRHS Trigger: TGAGTGTCTAAAGAAACTCCAAAAGTGCAACTCCAA...GAAGAGAGCCTGTCTTTGCTGGAAAAGCTCTTGGTCAAGAATTGGGAGGGTGGG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000102525.11 ENSMUST00000111713.2 ENSMUST00000111716.8 |
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| CDS-3UTR CCA 90 bp | TTTTCCAGCAAAGACAGGCTCTCTTCTCTCCTTGATACGGTAGGTATGAACAGATGTTCTGTTTCTCCCTaGAGGACTCAGCTTGAAGGT | + |
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Preference number: 4 (lower is better) Translates to: FSSKDRLSSLLDTVGMNRCSVSP*RTQLEG Trigger: ACCTTCAAGCTGAGTCCTCCAGGGAGAAACAGAACA...TCTGTTCATACCTACCGTATCAAGGAGAGAAGAGAGCCTGTCTTTGCTGGAAAA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000111713.2 ENSMUST00000111716.8 |
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| CDS-3UTR CCA 90 bp | TTTTCCAGCAAAGACAGGCTCTCTTCTCTCCTTGATACGGTAGGTATGAACAGATTGGAGTTGCACTTTTaGAGTTTCTTTAGACACTCA | + |
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Preference number: 4 (lower is better) Translates to: FSSKDRLSSLLDTVGMNRLELHF*SFFRHS Trigger: TGAGTGTCTAAAGAAACTCCAAAAGTGCAACTCCAA...TCTGTTCATACCTACCGTATCAAGGAGAGAAGAGAGCCTGTCTTTGCTGGAAAA 41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 4 transcripts: ENSMUST00000031421.12 ENSMUST00000102525.11 ENSMUST00000111713.2 ENSMUST00000111716.8 |
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| CDS-3UTR CAA 90 bp | GCTGAGCTGAAACTCAGAGATCTTCTTGGCCTCTCAAGTGCTGGGACTACAGGTCCTCAGTCCGGTCTCTaGCCTCAGCTGCTGGAGGTA | + |
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Preference number: 5 (lower is better) Translates to: AELKLRDLLGLSSAGTTGPQSGL*PQLLEV Trigger: TACCTCCAGCAGCTGAGGCAAGAGACCGGACTGAGG...ACCTGTAGTCCCAGCACTTGAGAGGCCAAGAAGATCTCTGAGTTTCAGCTCAGC 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000196969.5 |
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| CDS-3UTR CAA 90 bp | CGACACCCACCCTCCCAATTCTTGACCAAGAGCTTTTCCAGCAAAGACAGGCTCCCGGGGATAGGGAAGTaGGTGATTCCTAGCGTGTAC | + |
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Preference number: 5 (lower is better) Translates to: RHPPSQFLTKSFSSKDRLPGIGK*VIPSVY Trigger: GTACACGCTAGGAATCACCAACTTCCCTATCCCCGG...GAGCCTGTCTTTGCTGGAAAAGCTCTTGGTCAAGAATTGGGAGGGTGGGTGTCG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000102525.11 ENSMUST00000111713.2 ENSMUST00000111716.8 |
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| CDS-3UTR CAA 90 bp | AATCACCCGACACCCACCCTCCCAATTCTTGACCAAGAGCTTTTCCAGCAAAGACCTCAGTCCGGTCTCTaGCCTCAGCTGCTGGAGGTA | + |
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Preference number: 5 (lower is better) Translates to: NHPTPTLPILDQELFQQRPQSGL*PQLLEV Trigger: TACCTCCAGCAGCTGAGGCAAGAGACCGGACTGAGG...TCTTTGCTGGAAAAGCTCTTGGTCAAGAATTGGGAGGGTGGGTGTCGGGTGATT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000102525.11 ENSMUST00000111713.2 ENSMUST00000111716.8 |
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| CDS-3UTR CAA 90 bp | CGACACCCACCCTCCCAATTCTTGACCAAGAGCTTTTCCAGCAAAGACAGGCTCCCTGGAGGACTCAGCTaGAAGGTGGCTAGGATGTTC | + |
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Preference number: 5 (lower is better) Translates to: RHPPSQFLTKSFSSKDRLPGGLS*KVARMF Trigger: GAACATCCTAGCCACCTTCAAGCTGAGTCCTCCAGG...GAGCCTGTCTTTGCTGGAAAAGCTCTTGGTCAAGAATTGGGAGGGTGGGTGTCG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000111713.2 ENSMUST00000111716.8 |
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| CDS-3UTR CAA 90 bp | AAAATCGAAATCACCCGACACCCACCCTCCCAATTCTTGACCAAGAGCTTTTCCCCTCAGTCCGGTCTCTaGCCTCAGCTGCTGGAGGTA | + |
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Preference number: 5 (lower is better) Translates to: KIEITRHPPSQFLTKSFSPQSGL*PQLLEV Trigger: TACCTCCAGCAGCTGAGGCAAGAGACCGGACTGAGG...GGAAAAGCTCTTGGTCAAGAATTGGGAGGGTGGGTGTCGGGTGATTTCGATTTT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 3 transcripts: ENSMUST00000102525.11 ENSMUST00000111713.2 ENSMUST00000111716.8 |
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| CDS-3UTR CAA 90 bp | AATCACCCGACACCCACCCTCCCAATTCTTGACCAAGAGCTTTTCCAGCAAAGACCGGGGATAGGGAAGTaGGTGATTCCTAGCGTGTAC | + |
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Preference number: 5 (lower is better) Translates to: NHPTPTLPILDQELFQQRPGIGK*VIPSVY Trigger: GTACACGCTAGGAATCACCAACTTCCCTATCCCCGG...TCTTTGCTGGAAAAGCTCTTGGTCAAGAATTGGGAGGGTGGGTGTCGGGTGATT 52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000102525.11 ENSMUST00000111713.2 ENSMUST00000111716.8 |
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| CDS-3UTR CAA 90 bp | CGAAATCACCCGACACCCACCCTCCCAATTCTTGACCAAGAGCTTTTCCAGCAAATGTTACCGATGAGCTaGGTGTCCGGGTCCATGAGA | + |
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Preference number: 5 (lower is better) Translates to: RNHPTPTLPILDQELFQQMLPMS*VSGSMR Trigger: TCTCATGGACCCGGACACCAAGCTCATCGGTAACAT...TTGCTGGAAAAGCTCTTGGTCAAGAATTGGGAGGGTGGGTGTCGGGTGATTTCG 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000102525.11 |
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| CDS-3UTR CAA 90 bp | AATCGAAATCACCCGACACCCACCCTCCCAATTCTTGACCAAGAGCTTTTCCAGCCTGGAGGACTCAGCTaGAAGGTGGCTAGGATGTTC | + |
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Preference number: 5 (lower is better) Translates to: NRNHPTPTLPILDQELFQPGGLS*KVARMF Trigger: GAACATCCTAGCCACCTTCAAGCTGAGTCCTCCAGG...CTGGAAAAGCTCTTGGTCAAGAATTGGGAGGGTGGGTGTCGGGTGATTTCGATT 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000111713.2 ENSMUST00000111716.8 |
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| CDS-3UTR CAA 90 bp | CCCACCCTCCCAATTCTTGACCAAGAGCTTTTCCAGCAAAGACAGGCTCTCTTCCATTTCCTTCTCGCCTaGGCTCTTGGAGTTGCACTT | + |
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Preference number: 5 (lower is better) Translates to: PTLPILDQELFQQRQALFHFLLA*ALGVAL Trigger: AAGTGCAACTCCAAGAGCCAAGGCGAGAAGGAAATG...GAAGAGAGCCTGTCTTTGCTGGAAAAGCTCTTGGTCAAGAATTGGGAGGGTGGG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000102525.11 ENSMUST00000111713.2 ENSMUST00000111716.8 |
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| CDS-3UTR CAA 90 bp | TTTTCCAGCAAAGACAGGCTCTCTTCTCTCCTTGATACGGTAGGTATGAACAGACCTCAGTCCGGTCTCTaGCCTCAGCTGCTGGAGGTA | + |
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Preference number: 5 (lower is better) Translates to: FSSKDRLSSLLDTVGMNRPQSGL*PQLLEV Trigger: TACCTCCAGCAGCTGAGGCAAGAGACCGGACTGAGG...TCTGTTCATACCTACCGTATCAAGGAGAGAAGAGAGCCTGTCTTTGCTGGAAAA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000031421.12 ENSMUST00000102525.11 ENSMUST00000111713.2 ENSMUST00000111716.8 |
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| CDS-3UTR CAA 90 bp | AATCACCCGACACCCACCCTCCCAATTCTTGACCAAGAGCTTTTCCAGCAAAGACATTTCCTTCTCGCCTaGGCTCTTGGAGTTGCACTT | + |
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Preference number: 5 (lower is better) Translates to: NHPTPTLPILDQELFQQRHFLLA*ALGVAL Trigger: AAGTGCAACTCCAAGAGCCAAGGCGAGAAGGAAATG...TCTTTGCTGGAAAAGCTCTTGGTCAAGAATTGGGAGGGTGGGTGTCGGGTGATT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000102525.11 ENSMUST00000111713.2 ENSMUST00000111716.8 |
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| CDS-3UTR CAA 90 bp | GTGACCAAAGTGCTGGTGGCCAGGAGCCATTGTTGCTCTTCCTATGATTTTATTCCGGGGATAGGGAAGTaGGTGATTCCTAGCGTGTAC | + |
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Preference number: 5 (lower is better) Translates to: VTKVLVARSHCCSSYDFIPGIGK*VIPSVY Trigger: GTACACGCTAGGAATCACCAACTTCCCTATCCCCGG...AATAAAATCATAGGAAGAGCAACAATGGCTCCTGGCCACCAGCACTTTGGTCAC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000196969.5 |
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| CDS-3UTR CAA 90 bp | CCCACCCTCCCAATTCTTGACCAAGAGCTTTTCCAGCAAAGACAGGCTCTCTTCACAATGTCCGTGTCTTaGGCCTCACGTGTTCTGTTT | + |
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Preference number: 5 (lower is better) Translates to: PTLPILDQELFQQRQALFTMSVS*ASRVLF Trigger: AAACAGAACACGTGAGGCCAAAGACACGGACATTGT...GAAGAGAGCCTGTCTTTGCTGGAAAAGCTCTTGGTCAAGAATTGGGAGGGTGGG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000111713.2 |
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| CDS-3UTR CAA 90 bp | AAAATCGAAATCACCCGACACCCACCCTCCCAATTCTTGACCAAGAGCTTTTCCCATTTCCTTCTCGCCTaGGCTCTTGGAGTTGCACTT | + |
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Preference number: 5 (lower is better) Translates to: KIEITRHPPSQFLTKSFSHFLLA*ALGVAL Trigger: AAGTGCAACTCCAAGAGCCAAGGCGAGAAGGAAATG...GGAAAAGCTCTTGGTCAAGAATTGGGAGGGTGGGTGTCGGGTGATTTCGATTTT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000102525.11 ENSMUST00000111713.2 ENSMUST00000111716.8 |
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| CDS-3UTR CAA 90 bp | TTTTCCAGCAAAGACAGGCTCTCTTCTCTCCTTGATACGGTAGGTATGAACAGACCGGGGATAGGGAAGTaGGTGATTCCTAGCGTGTAC | + |
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Preference number: 5 (lower is better) Translates to: FSSKDRLSSLLDTVGMNRPGIGK*VIPSVY Trigger: GTACACGCTAGGAATCACCAACTTCCCTATCCCCGG...TCTGTTCATACCTACCGTATCAAGGAGAGAAGAGAGCCTGTCTTTGCTGGAAAA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 4 transcripts: ENSMUST00000031421.12 ENSMUST00000102525.11 ENSMUST00000111713.2 ENSMUST00000111716.8 |
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| CDS-3UTR CAA 90 bp | GTGACCAAAGTGCTGGTGGCCAGGAGCCATTGTTGCTCTTCCTATGATTTTATTCATTTCCTTCTCGCCTaGGCTCTTGGAGTTGCACTT | + |
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Preference number: 5 (lower is better) Translates to: VTKVLVARSHCCSSYDFIHFLLA*ALGVAL Trigger: AAGTGCAACTCCAAGAGCCAAGGCGAGAAGGAAATG...AATAAAATCATAGGAAGAGCAACAATGGCTCCTGGCCACCAGCACTTTGGTCAC 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000196969.5 |
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| CDS-3UTR CAA 90 bp | TTTTCCAGCAAAGACAGGCTCTCTTCTCTCCTTGATACGGTAGGTATGAACAGACATTTCCTTCTCGCCTaGGCTCTTGGAGTTGCACTT | + |
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Preference number: 5 (lower is better) Translates to: FSSKDRLSSLLDTVGMNRHFLLA*ALGVAL Trigger: AAGTGCAACTCCAAGAGCCAAGGCGAGAAGGAAATG...TCTGTTCATACCTACCGTATCAAGGAGAGAAGAGAGCCTGTCTTTGCTGGAAAA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000031421.12 ENSMUST00000102525.11 ENSMUST00000111713.2 ENSMUST00000111716.8 |
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| CDS TCA 72 bp | TGTCCGTGTCTTTGGTCTCGCGAGGGGCGGGTCCTTTaGACTGGCTTCGGAGGGGCAACAGGGCCATGTTAC | + |
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Preference number: 6 (lower is better) Translates to: CPCLWSREGRVL*TGFGGATGPCY Trigger: GTAACATGGCCCTGTTGCCCCTCCGAAGCCAGTTCAAAGGACCCGCCCCTCGCGAGACCAAAGACACGGACA 61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000031421.12 ENSMUST00000102525.11 |
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| CDS CAA 90 bp | ACTCTGAGGGTCAAAAACCTTCTCACACAGCCTCAGTCCGGTCTCTaGCCTCAGCTGCTGGAGGTACGCCCGCATCATCTCGTCCTCCTG | + |
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Preference number: 6 (lower is better) Translates to: TLRVKNLLTQPQSGL*PQLLEVRPHHLVLL Trigger: CAGGAGGACGAGATGATGCGGGCGTACCTCCAGCAGCTGAGGCAAGAGACCGGACTGAGGCTGTGTGAGAAGGTTTTTGACCCTCAGAGT 58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 5 transcripts: ENSMUST00000031421.12 ENSMUST00000102525.11 ENSMUST00000111713.2 ENSMUST00000111716.8 ENSMUST00000196969.5 |
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| CDS CAA 72 bp | GTCAAAAACCTTCTCACACAGCCTCAGTCCGGTCTCTaGCCTCAGCTGCTGGAGGTACGCCCGCATCATCTC | + |
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Preference number: 6 (lower is better) Translates to: VKNLLTQPQSGL*PQLLEVRPHHL Trigger: GAGATGATGCGGGCGTACCTCCAGCAGCTGAGGCAAGAGACCGGACTGAGGCTGTGTGAGAAGGTTTTTGAC 57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 5 transcripts: ENSMUST00000031421.12 ENSMUST00000102525.11 ENSMUST00000111713.2 ENSMUST00000111716.8 ENSMUST00000196969.5 |
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